Cp4.1LG10g04650 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG10g04650
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	RNA polymerase sigma factor sigF
Location	Cp4.1LG10: 1343880 .. 1350227 (+)
RNA-Seq Expression	Cp4.1LG10g04650
Synteny	Cp4.1LG10g04650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAACATTTGTCGTCGTCGTCTATTGCATCCGTATGCTTCTTTTAATGTGCAGTCCTCTGGGACTTTCTTTTCTTTCTCATACATTTCTTCGATAGGAAGGTTCAGCCTTAAACCGCGTTCATCGCTTTCGCCTTTGATTGAACTGCAGGTGAGTGTTTGTATTGATGATTAATGTCATATTTTCATCATTGATCCAGTCTGCCATTGTTTTGATCGTTCTTCTGTACGTTTTTTTAGTTGTTTTCGTCTTCTTCTTGATGTTTGTACGAGTTTGTTGTTATTTGATTGATTCAAATTTATCCACGCTTGAAAGCTTTGGATTGGTTAGAAATTGCATGGTTTTTTGATCGGCATCCGAAGATATTAATGCATAGAGGCGTTCTTAGTTAGATCAGTATCAAAATACGTCCCTTATTTGTTTGTTTGTTTGTTTTTTAATTATTAAACTTCGATGTTAGAAGGAACTTTTCAGACATCAAGTATTGATTATTGATCTCATGCTTGTAATCAACTGCAGTTCAATCTTTCTCTGGTAGGTAAGAAATTTTTGGGGTTGGTATTTCTGCAAACTTGCTAAAGAAGCAGTCTCTGGTGGAGAAACTACCCCTTCTTGAATAGGTGTTATGAGAAGATGGTCATGAACGATTATGATTCCGATGCGATTAGTTGGGGTCTTCGTCTTTTCAATGGGGATTCATCGTATAGTTCCGAGTACTTTCCTGACATGGCACAACACGATGTTAATTTCTATGAGCATTATTATGGAAATCATTGCAATAATGAGGTTAACCATGTGGAGAACGATGAGATTATTGCGCACACTCTTCAGGAGGAGTTTTCCCAATTAGAAATCGCAGAGGCCTCGGGCTATTCAAATATAGAAGATCCCTCCCAAGCATCTAAGTATGAGCTTGGTTGGGACAATCCATCCTCAAGGAACTACGGTTCAGGTTCTTACTAATACTAGCTATCTACTCCTTCTACGTATGTGGGATAGTGATCCTTATACGGTGCGTAAAATTTTTATAATCTGCAGAAAATGATTCTATTGAAGATGTAGTTGAAACTGTGGAGGCTTCTAGTTCATGTTCTAGTCCAGGTCAAGAGGATAGCTACTATCCACATGGGCATGATAGTCAAGTAGATTGGAAAATGGATCAAGTGATTCCAGCACCCGTGAGATTTTCTAATTACATCTTTTTATTTTGGCATAGCAGTTGAAGTAAACCATAGATTCATTGCGATAAAAATATTACCTCCTAGACTGATCAATTTATGCAAGACATTTTATGGAGCATGCTTTTTAGCTGGGGCTTGTGACTGCCGACATCTAGGAATACTCTATATTTTCTTAGAATTTGGAATTGATTTCTTCATAATTGGGAAATATTTATAATGATTTGCGTAGGTTCTTTTCTTTTTTCTTTTCGAAATTCTGGAAGATTTTGAACTATTCTTACAACATTTCTGCATTTTTGTCAGTCTCGAATGGTTACTGGAATCTTAGGGGTCTTGTACATTTGGTAGATGCTTTCTCTGTGAACCATTGACTTGCTCATGCTCTCTTTAACTGATTCCCAATATGCTGATTTTTTTATTTTTTATTTTCACAATTTATTTAATTTTTTGAACGACAATCTAGGAATCTTTTGAAACTATACAGTTGCAAAAGCCCACCTCTGCTTCTTTTCCCATTTCTGTGTTAACACAAGTATGCGGGACCCAAGATAATATCTGTCCTTGCCTGCCTACTACAAAGTTGCCTTACAATTTCTCATGTGATTTGGGCAGCATGTCCCAAGAATTAATGGTGAGATTCCATCAATTGATGAAGTAACTTCAGATCATCAACGGTTGCTGGATAGGTAATATCTCAGAAGCTCTCTGTTGTTTGATATGGTTGAATCTGTAGTCTATTGTTTATAGCTTGTGTGTGTGTTTGAATTTCTTTTATCCTTTTTAGTCTGCTACTTGCATGCCTTTTCTCTTAGTGTATGATTGTTGTTTGATATTGAATTTTGGGTATTAATTGTTATCTATCCACTGCCTTCTCAATCTTAGGTTGAAGGTATATGATTTTGTTGAACGTAAGGTTAAAGGGGATGGTAATTGTCAGGTTAGTAGTTTCTCATGCATGTGGTTCTGATCACAATTGAACAATTTGAATTGACCATGACATATATCAGTTTTCAATTTTCAGTTCCGTGCTTTATCAGATCAACTATTTGGAACATCTAATCGCCACAAGTTGGTGAGAGAAAATGTTGTGAATCAGGTATGTCGTTGTTGCTTTTAGCTCTACACTTATTCAAACTTCATTTTCAGTCTTTTTTTTTCTAAAGTTTTTCTACAAAAAAAATCCAATGGATTTTAAATTTATGCAAAATTCTTTTCCATTTCGAGAATGTCTAATATATGTTTTACGTCTTCTATGCAAAAATGTTTCATTTTCATAAGTTCGTCTCGACTATTTTTCAAAAGATCAAATAATGTATGTATATTGGACCTTTTGAGGCCATTATAGATCCTAAGAGGCAATTCTGATTGGTCAATAAAAATATATTTTAATGCTATTTCTTTTTTCTTAATCGTAGGAGGCAGTCTCATATCTACTGGATTATGACCTATTTAACATGGACCTCTGTCTCTCTCTTTTTTTTTTCTTCATACCAGCTCAAGTCACATCGGGAGATTTATGAGGGATATGTTCCCATGGCATATGATGATTATTTGGAAAAGATGTCCATGTATCATTTAATCTTCTATTTATTTAATTCTTTTCAACCCCATTTTCTAGTCCTGTTTGGAGAATTCTTAGTCTACTTCATTTGAAATTTTTCTAGGACTGGTGAGTGGGGTGATCATGTAACACTTCAGGCAGCTGCAGATTGGGTATGGTCATCGCAATACACTGTCTCCGGCTTTGAAGTGTTTTCTTCAAATAGTGTTGAAACTTGGAAGCTTAAAATATGTTTGTTGTTCATTCATGCAGTGAACCGAAATCTAAAATAATTTTGACCATGTTAATATTTAGAATGGCTAAAACAATTAAGCAAACTTATGACAGAGATTTGAACGTTCTAGGTTCAGCTATTTTGTGTTCATTGGCTTATTTATTACTTCAGAGTTAAATGTCCATTTTATTAACGGTATATGTCTTGGGTGACGTAACAATGCCCAATAATGCAGTCAATTAGAATGAACTTGCTAGATTGATATGAAAATGTAAAAATTCGTGAAGCTAAATGTGTCTACGACTGTTTTTTGCTGCAGTATGGCGTTAAAATATTCGTTATGACTTCTTTTAAGGAAACCTGTTGTATAGAGATTCTCCCCAGTTTTCAGAAGAAAAGGCAAGGTAAATTCTTCACTCAAATGTTTATATTAACTCGTGTAATTTTTCTGGTTATTCTACCTGGTTATGAGCCCATGCATGGCTCATTCTCTTGCTGATTTTTTTGGAAAATGGAATTTTAGTGCAGTACGCCTTTTCATTTGTTCTTACTCTTTCACTAGCATTTTTACTTTCAATTTCTTCTCCTTTGTAATTCAGTCAGATTGAATGGAGGAAGATGGTCTTTGAAAGTGCATCTGTTCTTTCCCTTCCGCACTGTTTTTCAGTTCTTTTTGGTTTCATTTGTTGTATCCTGAGTACTGCGAACCTGTTATCTCTTGCCAATAAACCAAAACCCATCTCTTTTATACCAAAAAGAGACAATTCCAATATTCAAATTCATTGACTTCTCTCCTCCTTTTGTGATCCACCATTCTTTATTTTCTTTATTCATTAATAGAACTCTGCATCAATGTTACATGTATGTAATTTTGTCTGCAAAGAGCTTCATATATTAGTCTGTTGTGCCATATGCAGTCATTTTCCTGAGCTTTTGGGCAGAGGTGCATTACAATTCAATCTATCCCCAAGAAGGTAAATATTTTCCTGTTCTTTCCATACTGAATCTAAAGCTTCCTGATATTATATCTCGTGGGTAATCATTCCATTCTTTAGTCGGAATAAGAACGTATGTAAGTTTCATTTTCTTGAATTGCACCGAGCTCCTTACCAACTTGATTTGATTGGTTGGGCTTGCATATTGATTCTATAGTTGTACCTCTCTAATTTTAATGGTCCAACCCTCACTTTTGATGCCTTAGACGTTTTCTTCTTGGGATCAAGTTGGTCTAAATTAGCTGCTAATCATTAATGCCACAAGTCCATAACTCATAGCTCCATATTTTACTCAGATGGTTCCTCAGTTGCAGATGAGCAATCAAATGACAGTAGAAAGAGGAGGAGATGGTGGATTTTTGGACATAAGCACTGAGACTCCGGGCAAAAGGTGCATTAAGACTTAACCCCTACTGCATCGTCTTCTTTAAATTTCAAGAAGACTTCTCGCGTCTCGGGCCCCCTTTTTATCAATAACTCCCATCTGCAGTTTATTGCATGAATAAAGATTTGGGGGGAGGACTCCACAACATTCCATATTGACTCCGATGATTGGACTTCAATGTTTTCAATTTGTAACCAGAGAAACTCGGTCTGTCCTGCTCTGGATCTTATTTTACAATTTTATATTAAATAGATTAATAAAAGTTGCAGGATTCTTGCACTTTATGGACCCCTTGCTTTGTGCTTTGATTGAAGAGAACGCAACGAACTTGGAGTTGTTTTATTTTAGTTCAGAATTTTTATAGATCTAACATTGTTGCATCTCATTCATATTGGCCTCCCATTCCAATAACCTTTAGATGCTTGGATCTGTACTTAAAAAGGCATCTTACGGTCTCTGCAGCTTCTTTGATATTATCTCCCTTCCATTTTCTTCTGTTCTTCATTGCAAATCCCATTCTATCCATTCAGACTTGATTAAAAGTAGAAGGGATGTTTTCATTTGAGTATCAGTATTTACTTCAATTGTATATTTCTCTCTTAGTTGATCTAACCCAGCAGCAGAGTAACAGAACAAAAGCGGCATAGGGATGGATTCTTTTGACAGAAAATGTTTGAGGTTAGAAATCTCATCCCTTCCTGATCTGAAAGTTCCTTTCTTTAACAGATTTTTAATGATTTTCGTTGACAAAAAACAAATAATTATAATATTTAATTTCCAGTACTAGGAATGTTCCATTTCATGCCCCACTGAAAATGTAATGCGTTGGAAGATATAAGCAGGCCATGTTGACAATGGTGGGTCCAATCATTCAGTTGAGCCAGAGAAGGTAGGTATTTGAATTTTAATAAAAAGAAAAATAATCGAATTTCCATAGCAGTAGTAGAAGAGCCTACAGATTCTTCTTCCCTTTACAAATTCCATCCAAAACCAGAACGAGGAAGGAGAACGGAGAAGAGATGAAAAAGGGTAAATTTCCGTACTGCAATTTGCTGTCTGTGTCTGTTTGATCCCTTTCAAATTTGTATTATTCTCTGAAGACCTCCTCCTCCTGTCTCTCCTCCGCCTCGTCTGCCGTCGACGGCTGCAACAGTAGCGCCGTAAACGGCATGTGGCGATAATCATTGCCCGCGGCAGAGTAGTCCAACCCCACCGGCTGGCATAAATCCAGACGGCAGCTCGGCGGTGGCATCGCGAACATCCCCTGCTCATCGGCGGCAACCCCCACCGACTGAACCCGACAAGAAACGGACGGACCGGACGAGGCCATAGCCGGGGAGATGGTTGAGATCGGAGCTGCCGGAACAGTACCAGTACCAGTGGCGGCAATAATGGAGGGCTCAGCCTGACGGAGAAGCCACTCGATAGTCTCGCCATCGGAACGATGACCGAGCTCGCGCGTCAATTGAAAGATTCGGGCGGCACAGAGGGCCGGCATACGGACACGCCGCCCTCTTCCGTTGACCTTGGTGTGACGGTCCCTCGAAGAAGAAGAGGATGATAACGAGGCGGTGGATTTGCGAGGAACGACGGATTGCTGGGTGACGTTGGTCGGAGATGCGTTACTACGGACGACTGAGTGAGAAGCAGCGGTGGGCTGAGAATGGTGATCGGAAGAAGAGGGGAATTTGTGTAGAGCGATCTCCGATCCCATAGTCGAAATACTGTGATTTAATTTCAGAAGAGGAAGAAATGAAAGGGGTTTTTTGTCTTTAGGGTTTTGATCGGAAGGAGGAGGAGGAGGAAGTCTTAGGGTTTCAGAAGAGAGCTTCGGAATGAGAAGAGGAAGGCACCGATGAGGAATAACTAATAAATAAAATAAAATAACTCACATCTGGGTCCACTTCCTGTTTGGTCCCACTCCACCTTTGGGCCCCACCCAACAAGTGGGCCCGATTCAATTCTTTCAAATTTATTCTCTCTTTTCAATTTTAAGGCTAAATTCACAATCCTC

mRNA sequence

CAACATTTGTCGTCGTCGTCTATTGCATCCGTATGCTTCTTTTAATGTGCAGTCCTCTGGGACTTTCTTTTCTTTCTCATACATTTCTTCGATAGGAAGGTTCAGCCTTAAACCGCGTTCATCGCTTTCGCCTTTGATTGAACTGCAGTTCAATCTTTCTCTGGTAGGTAAGAAATTTTTGGGGTTGGTATTTCTGCAAACTTGCTAAAGAAGCAGTCTCTGGTGGAGAAACTACCCCTTCTTGAATAGGTGTTATGAGAAGATGGTCATGAACGATTATGATTCCGATGCGATTAGTTGGGGTCTTCGTCTTTTCAATGGGGATTCATCGTATAGTTCCGAGTACTTTCCTGACATGGCACAACACGATGTTAATTTCTATGAGCATTATTATGGAAATCATTGCAATAATGAGGTTAACCATGTGGAGAACGATGAGATTATTGCGCACACTCTTCAGGAGGAGTTTTCCCAATTAGAAATCGCAGAGGCCTCGGGCTATTCAAATATAGAAGATCCCTCCCAAGCATCTAAGTATGAGCTTGGTTGGGACAATCCATCCTCAAGGAACTACGGTTCAGAAAATGATTCTATTGAAGATGTAGTTGAAACTGTGGAGGCTTCTAGTTCATGTTCTAGTCCAGGTCAAGAGGATAGCTACTATCCACATGGGCATGATAGTCAAGTAGATTGGAAAATGGATCAAGTGATTCCAGCACCCCATGTCCCAAGAATTAATGGTGAGATTCCATCAATTGATGAAGTAACTTCAGATCATCAACGGTTGCTGGATAGGTTGAAGGTATATGATTTTGTTGAACGTAAGGTTAAAGGGGATGGTAATTGTCAGTTCCGTGCTTTATCAGATCAACTATTTGGAACATCTAATCGCCACAAGTTGGTGAGAGAAAATGTTGTGAATCAGCTCAAGTCACATCGGGAGATTTATGAGGGATATGTTCCCATGGCATATGATGATTATTTGGAAAAGATGTCCATGACTGGTGAGTGGGGTGATCATGTAACACTTCAGGCAGCTGCAGATTGGATGGTTCCTCAGTTGCAGATGAGCAATCAAATGACAGTAGAAAGAGGAGGAGATGGTGGATTTTTGGACATAAGCACTGAGACTCCGGGCAAAAGGTGCATTAAGACTTAACCCCTACTGCATCGTCTTCTTTAAATTTCAAGAAGACTTCTCGCGTCTCGGGCCCCCTTTTTATCAATAACTCCCATCTGCAGTTTATTGCATGAATAAAGATTTGGGGGGAGGACTCCACAACATTCCATATTGACTCCGATGATTGGACTTCAATGTTTTCAATTTGTAACCAGAGAAACTCGGTCTGTCCTGCTCTGGATCTTATTTTACAATTTTATATTAAATAGATTAATAAAAGTTGCAGGATTCTTGCACTTTATGGACCCCTTGCTTTGTGCTTTGATTGAAGAGAACGCAACGAACTTGGAGTTGTTTTATTTTAGTTCAGAATTTTTATAGATCTAACATTGTTGCATCTCATTCATATTGGCCTCCCATTCCAATAACCTTTAGATGCTTGGATCTGTACTTAAAAAGGCATCTTACGGTCTCTGCAGCTTCTTTGATATTATCTCCCTTCCATTTTCTTCTGTTCTTCATTGCAAATCCCATTCTATCCATTCAGACTTGATTAAAAGTAGAAGGGATGTTTTCATTTGAGTATCAGTATTTACTTCAATTGTATATTTCTCTCTTAGTTGATCTAACCCAGCAGCAGAGTAACAGAACAAAAGCGGCATAGGGATGGATTCTTTTGACAGAAAATGTTTGAGTACTAGGAATGTTCCATTTCATGCCCCACTGAAAATGTAATGCGTTGGAAGATATAAGCAGGCCATGTTGACAATGGTGGGTCCAATCATTCAGTTGAGCCAGAGAAGGTAGGTATTTGAATTTTAATAAAAAGAAAAATAATCGAATTTCCATAGCAGTAGTAGAAGAGCCTACAGATTCTTCTTCCCTTTACAAATTCCATCCAAAACCAGAACGAGGAAGGAGAACGGAGAAGAGATGAAAAAGGGTAAATTTCCGTACTGCAATTTGCTGTCTGTGTCTGTTTGATCCCTTTCAAATTTGTATTATTCTCTGAAGACCTCCTCCTCCTGTCTCTCCTCCGCCTCGTCTGCCGTCGACGGCTGCAACAGTAGCGCCGTAAACGGCATGTGGCGATAATCATTGCCCGCGGCAGAGTAGTCCAACCCCACCGGCTGGCATAAATCCAGACGGCAGCTCGGCGGTGGCATCGCGAACATCCCCTGCTCATCGGCGGCAACCCCCACCGACTGAACCCGACAAGAAACGGACGGACCGGACGAGGCCATAGCCGGGGAGATGGTTGAGATCGGAGCTGCCGGAACAGTACCAGTACCAGTGGCGGCAATAATGGAGGGCTCAGCCTGACGGAGAAGCCACTCGATAGTCTCGCCATCGGAACGATGACCGAGCTCGCGCGTCAATTGAAAGATTCGGGCGGCACAGAGGGCCGGCATACGGACACGCCGCCCTCTTCCGTTGACCTTGGTGTGACGGTCCCTCGAAGAAGAAGAGGATGATAACGAGGCGGTGGATTTGCGAGGAACGACGGATTGCTGGGTGACGTTGGTCGGAGATGCGTTACTACGGACGACTGAGTGAGAAGCAGCGGTGGGCTGAGAATGGTGATCGGAAGAAGAGGGGAATTTGTGTAGAGCGATCTCCGATCCCATAGTCGAAATACTGTGATTTAATTTCAGAAGAGGAAGAAATGAAAGGGGTTTTTTGTCTTTAGGGTTTTGATCGGAAGGAGGAGGAGGAGGAAGTCTTAGGGTTTCAGAAGAGAGCTTCGGAATGAGAAGAGGAAGGCACCGATGAGGAATAACTAATAAATAAAATAAAATAACTCACATCTGGGTCCACTTCCTGTTTGGTCCCACTCCACCTTTGGGCCCCACCCAACAAGTGGGCCCGATTCAATTCTTTCAAATTTATTCTCTCTTTTCAATTTTAAGGCTAAATTCACAATCCTC

Coding sequence (CDS)

ATGGTCATGAACGATTATGATTCCGATGCGATTAGTTGGGGTCTTCGTCTTTTCAATGGGGATTCATCGTATAGTTCCGAGTACTTTCCTGACATGGCACAACACGATGTTAATTTCTATGAGCATTATTATGGAAATCATTGCAATAATGAGGTTAACCATGTGGAGAACGATGAGATTATTGCGCACACTCTTCAGGAGGAGTTTTCCCAATTAGAAATCGCAGAGGCCTCGGGCTATTCAAATATAGAAGATCCCTCCCAAGCATCTAAGTATGAGCTTGGTTGGGACAATCCATCCTCAAGGAACTACGGTTCAGAAAATGATTCTATTGAAGATGTAGTTGAAACTGTGGAGGCTTCTAGTTCATGTTCTAGTCCAGGTCAAGAGGATAGCTACTATCCACATGGGCATGATAGTCAAGTAGATTGGAAAATGGATCAAGTGATTCCAGCACCCCATGTCCCAAGAATTAATGGTGAGATTCCATCAATTGATGAAGTAACTTCAGATCATCAACGGTTGCTGGATAGGTTGAAGGTATATGATTTTGTTGAACGTAAGGTTAAAGGGGATGGTAATTGTCAGTTCCGTGCTTTATCAGATCAACTATTTGGAACATCTAATCGCCACAAGTTGGTGAGAGAAAATGTTGTGAATCAGCTCAAGTCACATCGGGAGATTTATGAGGGATATGTTCCCATGGCATATGATGATTATTTGGAAAAGATGTCCATGACTGGTGAGTGGGGTGATCATGTAACACTTCAGGCAGCTGCAGATTGGATGGTTCCTCAGTTGCAGATGAGCAATCAAATGACAGTAGAAAGAGGAGGAGATGGTGGATTTTTGGACATAAGCACTGAGACTCCGGGCAAAAGGTGCATTAAGACTTAA

Protein sequence

MVMNDYDSDAISWGLRLFNGDSSYSSEYFPDMAQHDVNFYEHYYGNHCNNEVNHVENDEIIAHTLQEEFSQLEIAEASGYSNIEDPSQASKYELGWDNPSSRNYGSENDSIEDVVETVEASSSCSSPGQEDSYYPHGHDSQVDWKMDQVIPAPHVPRINGEIPSIDEVTSDHQRLLDRLKVYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVVNQLKSHREIYEGYVPMAYDDYLEKMSMTGEWGDHVTLQAAADWMVPQLQMSNQMTVERGGDGGFLDISTETPGKRCIKT

Homology

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BLAST of Cp4.1LG10g04650 vs. ExPASy Swiss-Prot
Match: Q9LZF7 (OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 10 OS=Arabidopsis thaliana OX=3702 GN=OTU10 PE=1 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 2.0e-49
Identity = 124/295 (42.03%), Postives = 170/295 (57.63%), Query Frame = 0


Query: 1   MVMNDYDSDAISWGLRLFNGDSSYS-SEYFPDMAQHD----VNFYEH------YYGNHCN 60
           MV ++ ++  + W    F G   Y+   Y  +M   D    V  + H      YY  + +
Sbjct: 1   MVSHEENTSIVEW----FLGPHPYTYPPYGIEMIHEDDEVAVAHHHHHHQSGEYYREYED 60

Query: 61  NEVNHVENDEIIAHTLQEEFSQLEIAEASGYS--NIEDPSQASKYELGWDNP-------- 120
           +  + V+NDEIIA TLQ++F QLEIAE++ YS  N +   Q   Y   + N         
Sbjct: 61  HRSSDVDNDEIIARTLQDDFLQLEIAESNDYSHQNQQQQHQQEGYTNNYSNNNNGYAWND 120

Query: 121 -------SSRNYGSENDSIEDVVETVEASSSCSSPGQEDSYYPHGHDSQVD------WKM 180
                  SS   G++ND      ++V    SCSSP   D Y       Q D       ++
Sbjct: 121 QSPAVDYSSEWIGNDNDQDGRSDDSVNV-FSCSSPSDTDEYVYSWESDQCDADGEFGRRL 180

Query: 181 DQVIPAPHVPRINGEIPSIDEVTSDHQRLLDRLKVYDFVERKVKGDGNCQFRALSDQLFG 240
           +Q++P P++P+INGEIP  +E  SDH+RL +RL+++DF E KV GDGNCQFRAL+DQL+ 
Sbjct: 181 NQMVPIPYIPKINGEIPPEEEAVSDHERLRNRLEMFDFTEVKVPGDGNCQFRALADQLYK 240

Query: 241 TSNRHKLVRENVVNQLKSHREIYEGYVPMAYDDYLEKMSMTGEWGDHVTLQAAAD 262
           T++RHK VR  +V QLKS  + Y+GYVPM + DYL KMS +GEWGDHVTLQAAAD
Sbjct: 241 TADRHKHVRRQIVKQLKSRPDSYQGYVPMDFSDYLRKMSRSGEWGDHVTLQAAAD 290

[Close]

BLAST of Cp4.1LG10g04650 vs. ExPASy Swiss-Prot
Match: Q8LBW2 (OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 9 OS=Arabidopsis thaliana OX=3702 GN=OTU9 PE=1 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.0e-45
Identity = 115/282 (40.78%), Postives = 154/282 (54.61%), Query Frame = 0


Query: 7   DSDAISWGLR------LFNGDSSYSSEYFPDMAQHDVNFYEHYYGNHCNNEVNHVENDEI 66
           D DA+ WGL       L N  S  S   +         +    Y         +V+ND +
Sbjct: 6   DPDALRWGLHDLEVCTLTNAGSCSSVTRYESGGGGTQGYVREGYNQPV---TGYVDNDAV 65

Query: 67  IAHTLQEEFSQLEIAEASGYSNIEDPSQASKYELGWDNP--SSRNYG------------- 126
           IA   Q+E S++  AEASG +++   S  ++    W +P     N G             
Sbjct: 66  IAQFYQDELSRVARAEASGINSLSPTSVVAQ---DWPHPHQGQENQGEAIDITQESDILH 125

Query: 127 SENDSIEDV-VETVEASSSCSSPGQEDSYYPHGHDSQVDW-----KMDQVIPAPHVPRIN 186
           + N ++ED  V  +      SSP ++D         +  W     +++Q+IP  HVP+IN
Sbjct: 126 NHNGNMEDKNVARIRFEGGQSSPSRDDDSVCSVEIEEESWSEVGKRLNQMIPIAHVPKIN 185

Query: 187 GEIPSIDEVTSDHQRLLDRLKVYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVV 246
           GE+PS DE  SDH+RL  RL++Y  VE K++GDGNCQFR+LSDQL+ +   H  VRE VV
Sbjct: 186 GELPSEDEQISDHERLFQRLQLYGLVENKIEGDGNCQFRSLSDQLYRSPEHHNFVREQVV 245

Query: 247 NQLKSHREIYEGYVPMAYDDYLEKMSMTGEWGDHVTLQAAAD 262
           NQL  +REIYEGYVPMAY+DYL+ M   GEWGDHVTLQAAAD
Sbjct: 246 NQLAYNREIYEGYVPMAYNDYLKAMKRNGEWGDHVTLQAAAD 281

[Close]

BLAST of Cp4.1LG10g04650 vs. ExPASy Swiss-Prot
Match: Q9SGA5 (OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 12 OS=Arabidopsis thaliana OX=3702 GN=OTU12 PE=2 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 7.4e-36
Identity = 81/165 (49.09%), Postives = 100/165 (60.61%), Query Frame = 0


Query: 97  DNPSSRNYGSENDSIEDVVETVEASSSCSSPGQEDSYYPHGHDSQVDWKMDQVIPAPHVP 156
           D+ SS ++ S+ D+ +D +     S   S             D  V  ++  + P PHVP
Sbjct: 3   DSSSSTSWSSKKDTEDDRMIAFMLSEEYSK-----------LDGAVGRRLSNLAPVPHVP 62

Query: 157 RINGEIPSIDEVTSDHQRLLDRLKVYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRE 216
           RIN  IP++++ T DHQRLL RL VY   E KV GDGNCQFRALSDQL+ +   HK VR 
Sbjct: 63  RINCYIPNLNDATLDHQRLLQRLNVYGLCELKVSGDGNCQFRALSDQLYRSPEYHKQVRR 122

Query: 217 NVVNQLKSHREIYEGYVPMAYDDYLEKMSMTGEWGDHVTLQAAAD 262
            VV QLK  R +YE YVPM Y  Y +KM   GEWGDH+TLQAAAD
Sbjct: 123 EVVKQLKECRSMYESYVPMKYKRYYKKMGKFGEWGDHITLQAAAD 156

[Close]

BLAST of Cp4.1LG10g04650 vs. ExPASy Swiss-Prot
Match: Q0V869 (OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 11 OS=Arabidopsis thaliana OX=3702 GN=OTU11 PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.2e-31
Identity = 75/182 (41.21%), Postives = 102/182 (56.04%), Query Frame = 0


Query: 80  YSNIEDPSQASKYELGWDNPSSRNYGSENDSIEDVVETVEASSSCSSPGQEDSYYPHGHD 139
           ++N    ++AS       N S  +  ++ D  + +   +    S    G+      H   
Sbjct: 9   FANASTSARASGSTSASSNSSFSSSVADTDDDQTIARILAEDESLRREGKLGKRLSH--- 68

Query: 140 SQVDWKMDQVIPAPHVPRINGEIPSIDEVTSDHQRLLDRLKVYDFVERKVKGDGNCQFRA 199
                 +D +   PH PR+N EIP I++ T DH+ L  RL  Y   E +++GDGNCQFRA
Sbjct: 69  ------LDSI---PHTPRVNREIPDINDATLDHELLSGRLATYGLAELQMEGDGNCQFRA 128

Query: 200 LSDQLFGTSNRHKLVRENVVNQLKSHREIYEGYVPMAYDDYLEKMSMTGEWGDHVTLQAA 259
           L+DQLF  ++ HK VR++VV QLK  R++YE YVPM Y  Y  KM   GEWGDHVTLQAA
Sbjct: 129 LADQLFRNADYHKHVRKHVVKQLKQQRKLYEEYVPMKYRHYTRKMKKHGEWGDHVTLQAA 178

Query: 260 AD 262
           AD
Sbjct: 189 AD 178

[Close]

BLAST of Cp4.1LG10g04650 vs. ExPASy Swiss-Prot
Match: Q54P70 (OTU domain-containing protein DDB_G0284757 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0284757 PE=4 SV=2)

HSP 1 Score: 77.4 bits (189), Expect = 3.0e-13
Identity = 43/109 (39.45%), Postives = 62/109 (56.88%), Query Frame = 0


Query: 162 IPSIDEVTSDHQRLLDRLKVYDFVERK-VKGDGNCQFRALSDQLFGTSNRHKLVRENVVN 221
           +P   EV    QRL +RL++Y     K + GDGNCQ  ALSDQL+G  +  + VR+ +V+
Sbjct: 608 LPQSKEVQIAQQRLNERLELYMLKNSKEIPGDGNCQMHALSDQLYGDLSHSQEVRKTIVD 667

Query: 222 QLKSHRE--------IYEGYVPMAYDDYLEKMSMTGEWGDHVTLQAAAD 262
            L+ +++        I +      +DDY   MS  G WGDH+TL AAA+
Sbjct: 668 WLRKNKDFQLPNGATICQFVNTNNWDDYCNDMSKNGNWGDHLTLLAAAE 716

[Close]

BLAST of Cp4.1LG10g04650 vs. NCBI nr
Match: KAG7034558.1 (OTU domain-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 538 bits (1385), Expect = 2.21e-191
Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 0


Query: 1   MVMNDYDSDAISWGLRLFNGDSSYSSEYFPDMAQHDVNFYEHYYGNHCNNEVNHVENDEI 60
           MVMNDYDSDAISWGLRLFNGDSSYSSEYFPDMAQHDVNFYEHYYGNHCNNEVNHVENDEI
Sbjct: 1   MVMNDYDSDAISWGLRLFNGDSSYSSEYFPDMAQHDVNFYEHYYGNHCNNEVNHVENDEI 60

Query: 61  IAHTLQEEFSQLEIAEASGYSNIEDPSQASKYELGWDNPSSRNYGSENDSIEDVVETVEA 120
           IAHTLQEEFSQLEIAEASGYSNIEDPSQASKYELGWDNPSSRNYGSENDSIEDVVETVEA
Sbjct: 61  IAHTLQEEFSQLEIAEASGYSNIEDPSQASKYELGWDNPSSRNYGSENDSIEDVVETVEA 120

Query: 121 SSSCSSPGQEDSYYPHGHDSQVDWKMDQVIPAPHVPRINGEIPSIDEVTSDHQRLLDRLK 180
           SSSCSSPGQEDSYYPHGHDSQVDWKMDQVIPAPHVPRINGEIPSIDEVTSDHQRLLDRLK
Sbjct: 121 SSSCSSPGQEDSYYPHGHDSQVDWKMDQVIPAPHVPRINGEIPSIDEVTSDHQRLLDRLK 180

Query: 181 VYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVVNQLKSHREIYEGYVPMAYDDY 240
           VYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVVNQLKSHREIYEGYVPMAYDDY
Sbjct: 181 VYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVVNQLKSHREIYEGYVPMAYDDY 240

Query: 241 LEKMSMTGEWGDHVTLQAAADW 262
           LEKMSMTGEWGDHVTLQAAADW
Sbjct: 241 LEKMSMTGEWGDHVTLQAAADW 262

[Close]

BLAST of Cp4.1LG10g04650 vs. NCBI nr
Match: KAG6604409.1 (OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 538 bits (1385), Expect = 3.55e-191
Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 0


Query: 1   MVMNDYDSDAISWGLRLFNGDSSYSSEYFPDMAQHDVNFYEHYYGNHCNNEVNHVENDEI 60
           MVMNDYDSDAISWGLRLFNGDSSYSSEYFPDMAQHDVNFYEHYYGNHCNNEVNHVENDEI
Sbjct: 1   MVMNDYDSDAISWGLRLFNGDSSYSSEYFPDMAQHDVNFYEHYYGNHCNNEVNHVENDEI 60

Query: 61  IAHTLQEEFSQLEIAEASGYSNIEDPSQASKYELGWDNPSSRNYGSENDSIEDVVETVEA 120
           IAHTLQEEFSQLEIAEASGYSNIEDPSQASKYELGWDNPSSRNYGSENDSIEDVVETVEA
Sbjct: 61  IAHTLQEEFSQLEIAEASGYSNIEDPSQASKYELGWDNPSSRNYGSENDSIEDVVETVEA 120

Query: 121 SSSCSSPGQEDSYYPHGHDSQVDWKMDQVIPAPHVPRINGEIPSIDEVTSDHQRLLDRLK 180
           SSSCSSPGQEDSYYPHGHDSQVDWKMDQVIPAPHVPRINGEIPSIDEVTSDHQRLLDRLK
Sbjct: 121 SSSCSSPGQEDSYYPHGHDSQVDWKMDQVIPAPHVPRINGEIPSIDEVTSDHQRLLDRLK 180

Query: 181 VYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVVNQLKSHREIYEGYVPMAYDDY 240
           VYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVVNQLKSHREIYEGYVPMAYDDY
Sbjct: 181 VYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVVNQLKSHREIYEGYVPMAYDDY 240

Query: 241 LEKMSMTGEWGDHVTLQAAADW 262
           LEKMSMTGEWGDHVTLQAAADW
Sbjct: 241 LEKMSMTGEWGDHVTLQAAADW 262

[Close]

BLAST of Cp4.1LG10g04650 vs. NCBI nr
Match: XP_022926086.1 (RNA polymerase sigma factor sigF, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 538 bits (1385), Expect = 5.07e-184
Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 0


Query: 1   MVMNDYDSDAISWGLRLFNGDSSYSSEYFPDMAQHDVNFYEHYYGNHCNNEVNHVENDEI 60
           MVMNDYDSDAISWGLRLFNGDSSYSSEYFPDMAQHDVNFYEHYYGNHCNNEVNHVENDEI
Sbjct: 1   MVMNDYDSDAISWGLRLFNGDSSYSSEYFPDMAQHDVNFYEHYYGNHCNNEVNHVENDEI 60

Query: 61  IAHTLQEEFSQLEIAEASGYSNIEDPSQASKYELGWDNPSSRNYGSENDSIEDVVETVEA 120
           IAHTLQEEFSQLEIAEASGYSNIEDPSQASKYELGWDNPSSRNYGSENDSIEDVVETVEA
Sbjct: 61  IAHTLQEEFSQLEIAEASGYSNIEDPSQASKYELGWDNPSSRNYGSENDSIEDVVETVEA 120

Query: 121 SSSCSSPGQEDSYYPHGHDSQVDWKMDQVIPAPHVPRINGEIPSIDEVTSDHQRLLDRLK 180
           SSSCSSPGQEDSYYPHGHDSQVDWKMDQVIPAPHVPRINGEIPSIDEVTSDHQRLLDRLK
Sbjct: 121 SSSCSSPGQEDSYYPHGHDSQVDWKMDQVIPAPHVPRINGEIPSIDEVTSDHQRLLDRLK 180

Query: 181 VYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVVNQLKSHREIYEGYVPMAYDDY 240
           VYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVVNQLKSHREIYEGYVPMAYDDY
Sbjct: 181 VYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVVNQLKSHREIYEGYVPMAYDDY 240

Query: 241 LEKMSMTGEWGDHVTLQAAADW 262
           LEKMSMTGEWGDHVTLQAAADW
Sbjct: 241 LEKMSMTGEWGDHVTLQAAADW 262

[Close]

BLAST of Cp4.1LG10g04650 vs. NCBI nr
Match: XP_023543698.1 (RNA polymerase sigma factor sigF, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 538 bits (1385), Expect = 5.22e-184
Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 0


Query: 1   MVMNDYDSDAISWGLRLFNGDSSYSSEYFPDMAQHDVNFYEHYYGNHCNNEVNHVENDEI 60
           MVMNDYDSDAISWGLRLFNGDSSYSSEYFPDMAQHDVNFYEHYYGNHCNNEVNHVENDEI
Sbjct: 1   MVMNDYDSDAISWGLRLFNGDSSYSSEYFPDMAQHDVNFYEHYYGNHCNNEVNHVENDEI 60

Query: 61  IAHTLQEEFSQLEIAEASGYSNIEDPSQASKYELGWDNPSSRNYGSENDSIEDVVETVEA 120
           IAHTLQEEFSQLEIAEASGYSNIEDPSQASKYELGWDNPSSRNYGSENDSIEDVVETVEA
Sbjct: 61  IAHTLQEEFSQLEIAEASGYSNIEDPSQASKYELGWDNPSSRNYGSENDSIEDVVETVEA 120

Query: 121 SSSCSSPGQEDSYYPHGHDSQVDWKMDQVIPAPHVPRINGEIPSIDEVTSDHQRLLDRLK 180
           SSSCSSPGQEDSYYPHGHDSQVDWKMDQVIPAPHVPRINGEIPSIDEVTSDHQRLLDRLK
Sbjct: 121 SSSCSSPGQEDSYYPHGHDSQVDWKMDQVIPAPHVPRINGEIPSIDEVTSDHQRLLDRLK 180

Query: 181 VYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVVNQLKSHREIYEGYVPMAYDDY 240
           VYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVVNQLKSHREIYEGYVPMAYDDY
Sbjct: 181 VYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVVNQLKSHREIYEGYVPMAYDDY 240

Query: 241 LEKMSMTGEWGDHVTLQAAADW 262
           LEKMSMTGEWGDHVTLQAAADW
Sbjct: 241 LEKMSMTGEWGDHVTLQAAADW 262

[Close]

BLAST of Cp4.1LG10g04650 vs. NCBI nr
Match: XP_022978801.1 (RNA polymerase sigma factor sigF, chloroplastic [Cucurbita maxima])

HSP 1 Score: 535 bits (1379), Expect = 4.08e-183
Identity = 261/262 (99.62%), Postives = 261/262 (99.62%), Query Frame = 0


Query: 1   MVMNDYDSDAISWGLRLFNGDSSYSSEYFPDMAQHDVNFYEHYYGNHCNNEVNHVENDEI 60
           MVMNDYDSDAISWGLRLFNGDSSYSSEYFPDMAQHDVNFYEHYYGNHCNNEVNHVENDEI
Sbjct: 1   MVMNDYDSDAISWGLRLFNGDSSYSSEYFPDMAQHDVNFYEHYYGNHCNNEVNHVENDEI 60

Query: 61  IAHTLQEEFSQLEIAEASGYSNIEDPSQASKYELGWDNPSSRNYGSENDSIEDVVETVEA 120
           IAHTLQEEFSQLEIAEASGYSNIEDPSQASKY LGWDNPSSRNYGSENDSIEDVVETVEA
Sbjct: 61  IAHTLQEEFSQLEIAEASGYSNIEDPSQASKYALGWDNPSSRNYGSENDSIEDVVETVEA 120

Query: 121 SSSCSSPGQEDSYYPHGHDSQVDWKMDQVIPAPHVPRINGEIPSIDEVTSDHQRLLDRLK 180
           SSSCSSPGQEDSYYPHGHDSQVDWKMDQVIPAPHVPRINGEIPSIDEVTSDHQRLLDRLK
Sbjct: 121 SSSCSSPGQEDSYYPHGHDSQVDWKMDQVIPAPHVPRINGEIPSIDEVTSDHQRLLDRLK 180

Query: 181 VYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVVNQLKSHREIYEGYVPMAYDDY 240
           VYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVVNQLKSHREIYEGYVPMAYDDY
Sbjct: 181 VYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVVNQLKSHREIYEGYVPMAYDDY 240

Query: 241 LEKMSMTGEWGDHVTLQAAADW 262
           LEKMSMTGEWGDHVTLQAAADW
Sbjct: 241 LEKMSMTGEWGDHVTLQAAADW 262

[Close]

BLAST of Cp4.1LG10g04650 vs. ExPASy TrEMBL
Match: A0A6J1EDW3 (RNA polymerase sigma factor sigF, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111433307 PE=3 SV=1)

HSP 1 Score: 538 bits (1385), Expect = 2.45e-184
Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 0


Query: 1   MVMNDYDSDAISWGLRLFNGDSSYSSEYFPDMAQHDVNFYEHYYGNHCNNEVNHVENDEI 60
           MVMNDYDSDAISWGLRLFNGDSSYSSEYFPDMAQHDVNFYEHYYGNHCNNEVNHVENDEI
Sbjct: 1   MVMNDYDSDAISWGLRLFNGDSSYSSEYFPDMAQHDVNFYEHYYGNHCNNEVNHVENDEI 60

Query: 61  IAHTLQEEFSQLEIAEASGYSNIEDPSQASKYELGWDNPSSRNYGSENDSIEDVVETVEA 120
           IAHTLQEEFSQLEIAEASGYSNIEDPSQASKYELGWDNPSSRNYGSENDSIEDVVETVEA
Sbjct: 61  IAHTLQEEFSQLEIAEASGYSNIEDPSQASKYELGWDNPSSRNYGSENDSIEDVVETVEA 120

Query: 121 SSSCSSPGQEDSYYPHGHDSQVDWKMDQVIPAPHVPRINGEIPSIDEVTSDHQRLLDRLK 180
           SSSCSSPGQEDSYYPHGHDSQVDWKMDQVIPAPHVPRINGEIPSIDEVTSDHQRLLDRLK
Sbjct: 121 SSSCSSPGQEDSYYPHGHDSQVDWKMDQVIPAPHVPRINGEIPSIDEVTSDHQRLLDRLK 180

Query: 181 VYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVVNQLKSHREIYEGYVPMAYDDY 240
           VYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVVNQLKSHREIYEGYVPMAYDDY
Sbjct: 181 VYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVVNQLKSHREIYEGYVPMAYDDY 240

Query: 241 LEKMSMTGEWGDHVTLQAAADW 262
           LEKMSMTGEWGDHVTLQAAADW
Sbjct: 241 LEKMSMTGEWGDHVTLQAAADW 262

[Close]

BLAST of Cp4.1LG10g04650 vs. ExPASy TrEMBL
Match: A0A6J1IP18 (RNA polymerase sigma factor sigF, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111478657 PE=3 SV=1)

HSP 1 Score: 535 bits (1379), Expect = 1.97e-183
Identity = 261/262 (99.62%), Postives = 261/262 (99.62%), Query Frame = 0


Query: 1   MVMNDYDSDAISWGLRLFNGDSSYSSEYFPDMAQHDVNFYEHYYGNHCNNEVNHVENDEI 60
           MVMNDYDSDAISWGLRLFNGDSSYSSEYFPDMAQHDVNFYEHYYGNHCNNEVNHVENDEI
Sbjct: 1   MVMNDYDSDAISWGLRLFNGDSSYSSEYFPDMAQHDVNFYEHYYGNHCNNEVNHVENDEI 60

Query: 61  IAHTLQEEFSQLEIAEASGYSNIEDPSQASKYELGWDNPSSRNYGSENDSIEDVVETVEA 120
           IAHTLQEEFSQLEIAEASGYSNIEDPSQASKY LGWDNPSSRNYGSENDSIEDVVETVEA
Sbjct: 61  IAHTLQEEFSQLEIAEASGYSNIEDPSQASKYALGWDNPSSRNYGSENDSIEDVVETVEA 120

Query: 121 SSSCSSPGQEDSYYPHGHDSQVDWKMDQVIPAPHVPRINGEIPSIDEVTSDHQRLLDRLK 180
           SSSCSSPGQEDSYYPHGHDSQVDWKMDQVIPAPHVPRINGEIPSIDEVTSDHQRLLDRLK
Sbjct: 121 SSSCSSPGQEDSYYPHGHDSQVDWKMDQVIPAPHVPRINGEIPSIDEVTSDHQRLLDRLK 180

Query: 181 VYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVVNQLKSHREIYEGYVPMAYDDY 240
           VYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVVNQLKSHREIYEGYVPMAYDDY
Sbjct: 181 VYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVVNQLKSHREIYEGYVPMAYDDY 240

Query: 241 LEKMSMTGEWGDHVTLQAAADW 262
           LEKMSMTGEWGDHVTLQAAADW
Sbjct: 241 LEKMSMTGEWGDHVTLQAAADW 262

[Close]

BLAST of Cp4.1LG10g04650 vs. ExPASy TrEMBL
Match: A0A0A0KIE6 (OTU domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G446380 PE=4 SV=1)

HSP 1 Score: 480 bits (1236), Expect = 3.27e-168
Identity = 235/270 (87.04%), Postives = 251/270 (92.96%), Query Frame = 0


Query: 1   MVMNDYDSDAISWGLRLFNGDSS--------YSSEYFPDMAQHDVNFYEHYYGNHCNNEV 60
           MVMNDYDSDAI WGLR FNGDS+        YS+EY PD AQHDVNFYEHYYGN+ NNEV
Sbjct: 34  MVMNDYDSDAIRWGLRFFNGDSNGDSNGDMPYSTEYLPDTAQHDVNFYEHYYGNNYNNEV 93

Query: 61  NHVENDEIIAHTLQEEFSQLEIAEASGYSNIEDPSQASKYELGWDNPSSRNYGSENDSIE 120
           N+VENDEIIAHTLQEEFSQLEIAEASGYSN+EDPSQASK+ LGW+NPSSRNY SENDS+E
Sbjct: 94  NNVENDEIIAHTLQEEFSQLEIAEASGYSNVEDPSQASKFALGWNNPSSRNYSSENDSVE 153

Query: 121 DVVETVEASSSCSSPGQEDSYYPHGHDSQVDWKMDQVIPAPHVPRINGEIPSIDEVTSDH 180
           D VETVE SSSCSSPGQ D+YYP+GHD+QVDW+MDQ+IPAPHVPRINGEIPSIDEVTSDH
Sbjct: 154 DEVETVEPSSSCSSPGQGDNYYPYGHDNQVDWRMDQMIPAPHVPRINGEIPSIDEVTSDH 213

Query: 181 QRLLDRLKVYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVVNQLKSHREIYEGY 240
           QRLLDRLKVYDFVERKVKGDGNCQFRALSDQLFGTS+RHKLVRENVV+QLKSHREIYEGY
Sbjct: 214 QRLLDRLKVYDFVERKVKGDGNCQFRALSDQLFGTSDRHKLVRENVVSQLKSHREIYEGY 273

Query: 241 VPMAYDDYLEKMSMTGEWGDHVTLQAAADW 262
           VPM YDDYLEKMSM+GEWGDHVTLQAAADW
Sbjct: 274 VPMPYDDYLEKMSMSGEWGDHVTLQAAADW 303

[Close]

BLAST of Cp4.1LG10g04650 vs. ExPASy TrEMBL
Match: A0A1S4E3S8 (RNA polymerase sigma factor sigF, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500810 PE=3 SV=1)

HSP 1 Score: 480 bits (1236), Expect = 8.21e-162
Identity = 234/266 (87.97%), Postives = 248/266 (93.23%), Query Frame = 0


Query: 1   MVMNDYDSDAISWGLRLFNGDSS----YSSEYFPDMAQHDVNFYEHYYGNHCNNEVNHVE 60
           MVMNDYDSDAI WGLR FNGD +    YS+EY P  AQ DVNFYEHYYGNHCNNEVN+VE
Sbjct: 1   MVMNDYDSDAIRWGLRFFNGDLNGDMPYSTEYLPVTAQQDVNFYEHYYGNHCNNEVNNVE 60

Query: 61  NDEIIAHTLQEEFSQLEIAEASGYSNIEDPSQASKYELGWDNPSSRNYGSENDSIEDVVE 120
           NDEIIAHTLQEEFSQLEIAEASGYSN+EDPS ASK+ LGW+NPSSR Y SENDS+ED VE
Sbjct: 61  NDEIIAHTLQEEFSQLEIAEASGYSNVEDPSHASKFALGWNNPSSRKYSSENDSVEDEVE 120

Query: 121 TVEASSSCSSPGQEDSYYPHGHDSQVDWKMDQVIPAPHVPRINGEIPSIDEVTSDHQRLL 180
           TVE SSSCSSPGQED+YYP+GHD+QVDW+MDQ+IPAPHVPRINGEIPSIDEVTSDHQRLL
Sbjct: 121 TVEPSSSCSSPGQEDNYYPYGHDNQVDWRMDQMIPAPHVPRINGEIPSIDEVTSDHQRLL 180

Query: 181 DRLKVYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVVNQLKSHREIYEGYVPMA 240
           DRLKVYDFVERKVKGDGNCQFRALSDQLFGTS+RHKLVRENVVNQLKSHREIYEGYVPM 
Sbjct: 181 DRLKVYDFVERKVKGDGNCQFRALSDQLFGTSDRHKLVRENVVNQLKSHREIYEGYVPMP 240

Query: 241 YDDYLEKMSMTGEWGDHVTLQAAADW 262
           YDDYLEKMSM+GEWGDHVTLQAAADW
Sbjct: 241 YDDYLEKMSMSGEWGDHVTLQAAADW 266

[Close]

BLAST of Cp4.1LG10g04650 vs. ExPASy TrEMBL
Match: A0A5A7V893 (RNA polymerase sigma factor sigF OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold827G00350 PE=3 SV=1)

HSP 1 Score: 480 bits (1236), Expect = 8.21e-162
Identity = 234/266 (87.97%), Postives = 248/266 (93.23%), Query Frame = 0


Query: 1   MVMNDYDSDAISWGLRLFNGDSS----YSSEYFPDMAQHDVNFYEHYYGNHCNNEVNHVE 60
           MVMNDYDSDAI WGLR FNGD +    YS+EY P  AQ DVNFYEHYYGNHCNNEVN+VE
Sbjct: 1   MVMNDYDSDAIRWGLRFFNGDLNGDMPYSTEYLPVTAQQDVNFYEHYYGNHCNNEVNNVE 60

Query: 61  NDEIIAHTLQEEFSQLEIAEASGYSNIEDPSQASKYELGWDNPSSRNYGSENDSIEDVVE 120
           NDEIIAHTLQEEFSQLEIAEASGYSN+EDPS ASK+ LGW+NPSSR Y SENDS+ED VE
Sbjct: 61  NDEIIAHTLQEEFSQLEIAEASGYSNVEDPSHASKFALGWNNPSSRKYSSENDSVEDEVE 120

Query: 121 TVEASSSCSSPGQEDSYYPHGHDSQVDWKMDQVIPAPHVPRINGEIPSIDEVTSDHQRLL 180
           TVE SSSCSSPGQED+YYP+GHD+QVDW+MDQ+IPAPHVPRINGEIPSIDEVTSDHQRLL
Sbjct: 121 TVEPSSSCSSPGQEDNYYPYGHDNQVDWRMDQMIPAPHVPRINGEIPSIDEVTSDHQRLL 180

Query: 181 DRLKVYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVVNQLKSHREIYEGYVPMA 240
           DRLKVYDFVERKVKGDGNCQFRALSDQLFGTS+RHKLVRENVVNQLKSHREIYEGYVPM 
Sbjct: 181 DRLKVYDFVERKVKGDGNCQFRALSDQLFGTSDRHKLVRENVVNQLKSHREIYEGYVPMP 240

Query: 241 YDDYLEKMSMTGEWGDHVTLQAAADW 262
           YDDYLEKMSM+GEWGDHVTLQAAADW
Sbjct: 241 YDDYLEKMSMSGEWGDHVTLQAAADW 266

[Close]

BLAST of Cp4.1LG10g04650 vs. TAIR 10
Match: AT5G03330.1 (Cysteine proteinases superfamily protein )

HSP 1 Score: 197.6 bits (501), Expect = 1.4e-50
Identity = 124/295 (42.03%), Postives = 170/295 (57.63%), Query Frame = 0


Query: 1   MVMNDYDSDAISWGLRLFNGDSSYS-SEYFPDMAQHD----VNFYEH------YYGNHCN 60
           MV ++ ++  + W    F G   Y+   Y  +M   D    V  + H      YY  + +
Sbjct: 1   MVSHEENTSIVEW----FLGPHPYTYPPYGIEMIHEDDEVAVAHHHHHHQSGEYYREYED 60

Query: 61  NEVNHVENDEIIAHTLQEEFSQLEIAEASGYS--NIEDPSQASKYELGWDNP-------- 120
           +  + V+NDEIIA TLQ++F QLEIAE++ YS  N +   Q   Y   + N         
Sbjct: 61  HRSSDVDNDEIIARTLQDDFLQLEIAESNDYSHQNQQQQHQQEGYTNNYSNNNNGYAWND 120

Query: 121 -------SSRNYGSENDSIEDVVETVEASSSCSSPGQEDSYYPHGHDSQVD------WKM 180
                  SS   G++ND      ++V    SCSSP   D Y       Q D       ++
Sbjct: 121 QSPAVDYSSEWIGNDNDQDGRSDDSVNV-FSCSSPSDTDEYVYSWESDQCDADGEFGRRL 180

Query: 181 DQVIPAPHVPRINGEIPSIDEVTSDHQRLLDRLKVYDFVERKVKGDGNCQFRALSDQLFG 240
           +Q++P P++P+INGEIP  +E  SDH+RL +RL+++DF E KV GDGNCQFRAL+DQL+ 
Sbjct: 181 NQMVPIPYIPKINGEIPPEEEAVSDHERLRNRLEMFDFTEVKVPGDGNCQFRALADQLYK 240

Query: 241 TSNRHKLVRENVVNQLKSHREIYEGYVPMAYDDYLEKMSMTGEWGDHVTLQAAAD 262
           T++RHK VR  +V QLKS  + Y+GYVPM + DYL KMS +GEWGDHVTLQAAAD
Sbjct: 241 TADRHKHVRRQIVKQLKSRPDSYQGYVPMDFSDYLRKMSRSGEWGDHVTLQAAAD 290

[Close]

BLAST of Cp4.1LG10g04650 vs. TAIR 10
Match: AT5G03330.2 (Cysteine proteinases superfamily protein )

HSP 1 Score: 197.6 bits (501), Expect = 1.4e-50
Identity = 124/295 (42.03%), Postives = 170/295 (57.63%), Query Frame = 0


Query: 1   MVMNDYDSDAISWGLRLFNGDSSYS-SEYFPDMAQHD----VNFYEH------YYGNHCN 60
           MV ++ ++  + W    F G   Y+   Y  +M   D    V  + H      YY  + +
Sbjct: 1   MVSHEENTSIVEW----FLGPHPYTYPPYGIEMIHEDDEVAVAHHHHHHQSGEYYREYED 60

Query: 61  NEVNHVENDEIIAHTLQEEFSQLEIAEASGYS--NIEDPSQASKYELGWDNP-------- 120
           +  + V+NDEIIA TLQ++F QLEIAE++ YS  N +   Q   Y   + N         
Sbjct: 61  HRSSDVDNDEIIARTLQDDFLQLEIAESNDYSHQNQQQQHQQEGYTNNYSNNNNGYAWND 120

Query: 121 -------SSRNYGSENDSIEDVVETVEASSSCSSPGQEDSYYPHGHDSQVD------WKM 180
                  SS   G++ND      ++V    SCSSP   D Y       Q D       ++
Sbjct: 121 QSPAVDYSSEWIGNDNDQDGRSDDSVNV-FSCSSPSDTDEYVYSWESDQCDADGEFGRRL 180

Query: 181 DQVIPAPHVPRINGEIPSIDEVTSDHQRLLDRLKVYDFVERKVKGDGNCQFRALSDQLFG 240
           +Q++P P++P+INGEIP  +E  SDH+RL +RL+++DF E KV GDGNCQFRAL+DQL+ 
Sbjct: 181 NQMVPIPYIPKINGEIPPEEEAVSDHERLRNRLEMFDFTEVKVPGDGNCQFRALADQLYK 240

Query: 241 TSNRHKLVRENVVNQLKSHREIYEGYVPMAYDDYLEKMSMTGEWGDHVTLQAAAD 262
           T++RHK VR  +V QLKS  + Y+GYVPM + DYL KMS +GEWGDHVTLQAAAD
Sbjct: 241 TADRHKHVRRQIVKQLKSRPDSYQGYVPMDFSDYLRKMSRSGEWGDHVTLQAAAD 290

[Close]

BLAST of Cp4.1LG10g04650 vs. TAIR 10
Match: AT5G04250.1 (Cysteine proteinases superfamily protein )

HSP 1 Score: 185.3 bits (469), Expect = 7.3e-47
Identity = 115/282 (40.78%), Postives = 154/282 (54.61%), Query Frame = 0


Query: 7   DSDAISWGLR------LFNGDSSYSSEYFPDMAQHDVNFYEHYYGNHCNNEVNHVENDEI 66
           D DA+ WGL       L N  S  S   +         +    Y         +V+ND +
Sbjct: 6   DPDALRWGLHDLEVCTLTNAGSCSSVTRYESGGGGTQGYVREGYNQPV---TGYVDNDAV 65

Query: 67  IAHTLQEEFSQLEIAEASGYSNIEDPSQASKYELGWDNP--SSRNYG------------- 126
           IA   Q+E S++  AEASG +++   S  ++    W +P     N G             
Sbjct: 66  IAQFYQDELSRVARAEASGINSLSPTSVVAQ---DWPHPHQGQENQGEAIDITQESDILH 125

Query: 127 SENDSIEDV-VETVEASSSCSSPGQEDSYYPHGHDSQVDW-----KMDQVIPAPHVPRIN 186
           + N ++ED  V  +      SSP ++D         +  W     +++Q+IP  HVP+IN
Sbjct: 126 NHNGNMEDKNVARIRFEGGQSSPSRDDDSVCSVEIEEESWSEVGKRLNQMIPIAHVPKIN 185

Query: 187 GEIPSIDEVTSDHQRLLDRLKVYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVV 246
           GE+PS DE  SDH+RL  RL++Y  VE K++GDGNCQFR+LSDQL+ +   H  VRE VV
Sbjct: 186 GELPSEDEQISDHERLFQRLQLYGLVENKIEGDGNCQFRSLSDQLYRSPEHHNFVREQVV 245

Query: 247 NQLKSHREIYEGYVPMAYDDYLEKMSMTGEWGDHVTLQAAAD 262
           NQL  +REIYEGYVPMAY+DYL+ M   GEWGDHVTLQAAAD
Sbjct: 246 NQLAYNREIYEGYVPMAYNDYLKAMKRNGEWGDHVTLQAAAD 281

[Close]

BLAST of Cp4.1LG10g04650 vs. TAIR 10
Match: AT5G04250.2 (Cysteine proteinases superfamily protein )

HSP 1 Score: 185.3 bits (469), Expect = 7.3e-47
Identity = 115/282 (40.78%), Postives = 154/282 (54.61%), Query Frame = 0


Query: 7   DSDAISWGLR------LFNGDSSYSSEYFPDMAQHDVNFYEHYYGNHCNNEVNHVENDEI 66
           D DA+ WGL       L N  S  S   +         +    Y         +V+ND +
Sbjct: 6   DPDALRWGLHDLEVCTLTNAGSCSSVTRYESGGGGTQGYVREGYNQPV---TGYVDNDAV 65

Query: 67  IAHTLQEEFSQLEIAEASGYSNIEDPSQASKYELGWDNP--SSRNYG------------- 126
           IA   Q+E S++  AEASG +++   S  ++    W +P     N G             
Sbjct: 66  IAQFYQDELSRVARAEASGINSLSPTSVVAQ---DWPHPHQGQENQGEAIDITQESDILH 125

Query: 127 SENDSIEDV-VETVEASSSCSSPGQEDSYYPHGHDSQVDW-----KMDQVIPAPHVPRIN 186
           + N ++ED  V  +      SSP ++D         +  W     +++Q+IP  HVP+IN
Sbjct: 126 NHNGNMEDKNVARIRFEGGQSSPSRDDDSVCSVEIEEESWSEVGKRLNQMIPIAHVPKIN 185

Query: 187 GEIPSIDEVTSDHQRLLDRLKVYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVV 246
           GE+PS DE  SDH+RL  RL++Y  VE K++GDGNCQFR+LSDQL+ +   H  VRE VV
Sbjct: 186 GELPSEDEQISDHERLFQRLQLYGLVENKIEGDGNCQFRSLSDQLYRSPEHHNFVREQVV 245

Query: 247 NQLKSHREIYEGYVPMAYDDYLEKMSMTGEWGDHVTLQAAAD 262
           NQL  +REIYEGYVPMAY+DYL+ M   GEWGDHVTLQAAAD
Sbjct: 246 NQLAYNREIYEGYVPMAYNDYLKAMKRNGEWGDHVTLQAAAD 281

[Close]

BLAST of Cp4.1LG10g04650 vs. TAIR 10
Match: AT3G02070.1 (Cysteine proteinases superfamily protein )

HSP 1 Score: 152.5 bits (384), Expect = 5.3e-37
Identity = 81/165 (49.09%), Postives = 100/165 (60.61%), Query Frame = 0


Query: 97  DNPSSRNYGSENDSIEDVVETVEASSSCSSPGQEDSYYPHGHDSQVDWKMDQVIPAPHVP 156
           D+ SS ++ S+ D+ +D +     S   S             D  V  ++  + P PHVP
Sbjct: 3   DSSSSTSWSSKKDTEDDRMIAFMLSEEYSK-----------LDGAVGRRLSNLAPVPHVP 62

Query: 157 RINGEIPSIDEVTSDHQRLLDRLKVYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRE 216
           RIN  IP++++ T DHQRLL RL VY   E KV GDGNCQFRALSDQL+ +   HK VR 
Sbjct: 63  RINCYIPNLNDATLDHQRLLQRLNVYGLCELKVSGDGNCQFRALSDQLYRSPEYHKQVRR 122

Query: 217 NVVNQLKSHREIYEGYVPMAYDDYLEKMSMTGEWGDHVTLQAAAD 262
            VV QLK  R +YE YVPM Y  Y +KM   GEWGDH+TLQAAAD
Sbjct: 123 EVVKQLKECRSMYESYVPMKYKRYYKKMGKFGEWGDHITLQAAAD 156

The following BLAST results are available for this feature:

BLAST of Cp4.1LG10g04650 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZF7	2.0e-49	42.03	OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 10 OS=Arabidopsis thalia...	[more]
Q8LBW2	1.0e-45	40.78	OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 9 OS=Arabidopsis thalian...	[more]
Q9SGA5	7.4e-36	49.09	OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 12 OS=Arabidopsis thalia...	[more]
Q0V869	4.2e-31	41.21	OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 11 OS=Arabidopsis thalia...	[more]
Q54P70	3.0e-13	39.45	OTU domain-containing protein DDB_G0284757 OS=Dictyostelium discoideum OX=44689 ...	[more]

BLAST of Cp4.1LG10g04650 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7034558.1	2.21e-191	100.00	OTU domain-containing protein, partial [Cucurbita argyrosperma subsp. argyrosper...	[more]
KAG6604409.1	3.55e-191	100.00	OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 10, partial [Cucurbita a...	[more]
XP_022926086.1	5.07e-184	100.00	RNA polymerase sigma factor sigF, chloroplastic-like [Cucurbita moschata]	[more]
XP_023543698.1	5.22e-184	100.00	RNA polymerase sigma factor sigF, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022978801.1	4.08e-183	99.62	RNA polymerase sigma factor sigF, chloroplastic [Cucurbita maxima]	[more]

BLAST of Cp4.1LG10g04650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EDW3	2.45e-184	100.00	RNA polymerase sigma factor sigF, chloroplastic-like OS=Cucurbita moschata OX=36...	[more]
A0A6J1IP18	1.97e-183	99.62	RNA polymerase sigma factor sigF, chloroplastic OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A0A0KIE6	3.27e-168	87.04	OTU domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G446380 PE=4 SV...	[more]
A0A1S4E3S8	8.21e-162	87.97	RNA polymerase sigma factor sigF, chloroplastic isoform X1 OS=Cucumis melo OX=36...	[more]
A0A5A7V893	8.21e-162	87.97	RNA polymerase sigma factor sigF OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]

BLAST of Cp4.1LG10g04650 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G03330.1	1.4e-50	42.03	Cysteine proteinases superfamily protein	[more]
AT5G03330.2	1.4e-50	42.03	Cysteine proteinases superfamily protein	[more]
AT5G04250.1	7.3e-47	40.78	Cysteine proteinases superfamily protein	[more]
AT5G04250.2	7.3e-47	40.78	Cysteine proteinases superfamily protein	[more]
AT3G02070.1	5.3e-37	49.09	Cysteine proteinases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003323	OTU domain	PFAM	PF02338	OTU	coord: 190..262 e-value: 1.3E-9 score: 38.6
IPR003323	OTU domain	PROSITE	PS50802	OTU	coord: 184..290 score: 12.296144
None	No IPR available	GENE3D	3.90.70.80		coord: 165..275 e-value: 4.0E-29 score: 103.3
None	No IPR available	PANTHER	PTHR12419	OTU DOMAIN CONTAINING PROTEIN	coord: 24..263
None	No IPR available	PANTHER	PTHR12419:SF78	OTU DOMAIN-CONTAINING PROTEIN DDB_G0284757-LIKE ISOFORM X1	coord: 24..263
IPR038765	Papain-like cysteine peptidase superfamily	SUPERFAMILY	54001	Cysteine proteinases	coord: 171..262

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG10g04650.1	Cp4.1LG10g04650.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071482	cellular response to light stimulus
biological_process	GO:2000142	regulation of DNA-templated transcription, initiation
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016987	sigma factor activity