Cp4.1LG10g04020 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG10g04020
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Casparian strip membrane protein 1
Location	Cp4.1LG10: 1740986 .. 1741928 (+)
RNA-Seq Expression	Cp4.1LG10g04020
Synteny	Cp4.1LG10g04020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAACGCCGAATCCTCTGCCATCAATGTTGCCTCCGAGACCACCAACAGCGGCCCAATTGGGAAGAAGAAGAGCACGACGCCGTTGCTAGCGGCGGAGGTCCCAATCCGGCCAGACAGGGGAACCCACCGGATGAAACGTGGGCTTGCCATTTTCGACATCGTTCTGAGAATCGGCGCCCTTTCCTCGGCGCTGGCGGCGGCAGCCACCATGGGAACCAGTGGCCAAACGTTGCCGTTTTTCACTCAGTTCTTCCAGTTCGAGGCTAGCTACGATGATTTGCCCACTTTCCAGTTGGGTGCTTTTCATTTTTTAAACAAAATACTCTTCTTATTGCGATTGAATCACTTAAACAAATAATTGAAATTTTGAATTGAAATTTGCAGGTTTTTTGTGATCGTAATGGGAATCGTTGCGGGATATGTGGTTCTATCCCTTCCATTCTCAATTGTTTGCATTATTCGTCCCCACGCTGCTGGGCCTCGCCTTCTCCTCTTGATTTTGGACTCAGTAAGTATCACATAAAACTCCCGCTAGGAACCACGACTCTCAACAATAGTACGATATTGTCTACTTTGATGCTTTTGACTTCCTCAAAAAGCCTTATACGATCCTCGAAAATAACTGCGACAATAGCATAATATTGTCCATTTTAAGCATAAGCTCTGAATTAGCGGAATGTAGGACTGCTTTGAAGAAACGTACATGTTGTGGTTTGCAGGTGGCTTTGGCGTTGAGCACAGCAGCAGCAGGAGCGGCAGCGGCAGTGGTGGCGCTTGCACACAGTGGGAACTCAAGCACGAACTGGCTGGCAGTGTGCAACCAATTTGGGGACTTTTGCCAACAAGCGAGTGGGGCTGTGGTGGGCTCTTTTGCTGCTGTTTTGCTCTTCCTTCTACTCATCTTGTTCTCTGCCTTGTCCCTCAAGAATGCCCATTGA

mRNA sequence

ATGAAGAACGCCGAATCCTCTGCCATCAATGTTGCCTCCGAGACCACCAACAGCGGCCCAATTGGGAAGAAGAAGAGCACGACGCCGTTGCTAGCGGCGGAGGTCCCAATCCGGCCAGACAGGGGAACCCACCGGATGAAACGTGGGCTTGCCATTTTCGACATCGTTCTGAGAATCGGCGCCCTTTCCTCGGCGCTGGCGGCGGCAGCCACCATGGGAACCAGTGGCCAAACGTTGCCGTTTTTCACTCAGTTCTTCCAGTTCGAGGCTAGCTACGATGATTTGCCCACTTTCCAGTTTTTTGTGATCGTAATGGGAATCGTTGCGGGATATGTGGTGGCTTTGGCGTTGAGCACAGCAGCAGCAGGAGCGGCAGCGGCAGTGGTGGCGCTTGCACACAGTGGGAACTCAAGCACGAACTGGCTGGCAGTGTGCAACCAATTTGGGGACTTTTGCCAACAAGCGAGTGGGGCTGTGGTGGGCTCTTTTGCTGCTGTTTTGCTCTTCCTTCTACTCATCTTGTTCTCTGCCTTGTCCCTCAAGAATGCCCATTGA

Coding sequence (CDS)

ATGAAGAACGCCGAATCCTCTGCCATCAATGTTGCCTCCGAGACCACCAACAGCGGCCCAATTGGGAAGAAGAAGAGCACGACGCCGTTGCTAGCGGCGGAGGTCCCAATCCGGCCAGACAGGGGAACCCACCGGATGAAACGTGGGCTTGCCATTTTCGACATCGTTCTGAGAATCGGCGCCCTTTCCTCGGCGCTGGCGGCGGCAGCCACCATGGGAACCAGTGGCCAAACGTTGCCGTTTTTCACTCAGTTCTTCCAGTTCGAGGCTAGCTACGATGATTTGCCCACTTTCCAGTTTTTTGTGATCGTAATGGGAATCGTTGCGGGATATGTGGTGGCTTTGGCGTTGAGCACAGCAGCAGCAGGAGCGGCAGCGGCAGTGGTGGCGCTTGCACACAGTGGGAACTCAAGCACGAACTGGCTGGCAGTGTGCAACCAATTTGGGGACTTTTGCCAACAAGCGAGTGGGGCTGTGGTGGGCTCTTTTGCTGCTGTTTTGCTCTTCCTTCTACTCATCTTGTTCTCTGCCTTGTCCCTCAAGAATGCCCATTGA

Protein sequence

MKNAESSAINVASETTNSGPIGKKKSTTPLLAAEVPIRPDRGTHRMKRGLAIFDIVLRIGALSSALAAAATMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVIVMGIVAGYVVALALSTAAAGAAAAVVALAHSGNSSTNWLAVCNQFGDFCQQASGAVVGSFAAVLLFLLLILFSALSLKNAH

Homology

[Close]

BLAST of Cp4.1LG10g04020 vs. ExPASy Swiss-Prot
Match: P0DI61 (Casparian strip membrane protein 1 OS=Cucumis melo OX=3656 PE=2 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 3.6e-73
Identity = 159/212 (75.00%), Postives = 169/212 (79.72%), Query Frame = 0


Query: 1   MKNAESSAINVASETTNSGPIGKKKSTTPLLAAEVPIRPDRGTHRMKRGLAIFDIVLRIG 60
           MK  ES+AI++A ET NSGPIGKKKSTTPLLAA V   PDRGTHRMKRGLAIFD VLRIG
Sbjct: 1   MKTGESTAIDIAPETNNSGPIGKKKSTTPLLAAPV---PDRGTHRMKRGLAIFDFVLRIG 60

Query: 61  ALSSALAAAATMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVIVMGIVAGYV-------- 120
            L+SALAAAA MGTS QTLPFFTQFFQFEASYDDLPTFQFFV+ M +VAGYV        
Sbjct: 61  VLASALAAAAAMGTSEQTLPFFTQFFQFEASYDDLPTFQFFVVAMAVVAGYVVLSIPFSI 120

Query: 121 --------------------VALALSTAAAGAAAAVVALAHSGNSSTNWLAVCNQFGDFC 180
                               VAL L+TAAAGAAAAVV+LAHSGNSSTNWLA+CNQFGDFC
Sbjct: 121 VCIIRPHAAGPRVLLLILDSVALTLNTAAAGAAAAVVSLAHSGNSSTNWLAICNQFGDFC 180

Query: 181 QQASGAVVGSFAAVLLFLLLILFSALSLKNAH 185
           QQASGAVVGSFAAVLLFLLLILFSALSLKN+H
Sbjct: 181 QQASGAVVGSFAAVLLFLLLILFSALSLKNSH 209

[Close]

BLAST of Cp4.1LG10g04020 vs. ExPASy Swiss-Prot
Match: B9IIR5 (Casparian strip membrane protein 2 OS=Populus trichocarpa OX=3694 GN=POPTRDRAFT_576556 PE=2 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.5e-42
Identity = 103/185 (55.68%), Postives = 129/185 (69.73%), Query Frame = 0


Query: 25  KSTTPLLAAEVPIRPDRGTHRMKRGLAIFDIVLRIGALSSALAAAATMGTSGQTLPFFTQ 84
           K T PL+AA  P++   G    K+G+AIFD +LR+ A+++ALAAAA+MGTS +TLPFFTQ
Sbjct: 18  KGTAPLIAA--PMKEKGG---YKKGIAIFDFILRLAAIATALAAAASMGTSDETLPFFTQ 77

Query: 85  FFQFEASYDDLPTFQFFVIVMGIVAGYV----------------------------VALA 144
           FFQF+ASYDDLPTFQFFVI M IVAGY+                            VAL 
Sbjct: 78  FFQFQASYDDLPTFQFFVIAMAIVAGYLVLSLPFSIVAIVRPHAAGPRLLLIILDTVALT 137

Query: 145 LSTAAAGAAAAVVALAHSGNSSTNWLAVCNQFGDFCQQASGAVVGSFAAVLLFLLLILFS 182
           L+TAA  AAAA+V LAH+GNSSTNWLA+C QFGDFCQ+ SGAVV SF  V++F+ L++ S
Sbjct: 138 LNTAAGAAAAAIVYLAHNGNSSTNWLAICQQFGDFCQKNSGAVVASFITVVIFVFLLVLS 197

[Close]

BLAST of Cp4.1LG10g04020 vs. ExPASy Swiss-Prot
Match: B9SX12 (Casparian strip membrane protein 1 OS=Ricinus communis OX=3988 GN=RCOM_1259250 PE=2 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 4.3e-42
Identity = 107/204 (52.45%), Postives = 134/204 (65.69%), Query Frame = 0


Query: 6   SSAINVASETTNSGPIGKKKSTTPLLAAEVPIRPDRGTHRMKRGLAIFDIVLRIGALSSA 65
           S+ I + +E   S  + K K+  PL+ A       +G +  K+G+AIFD +LR+GA+ SA
Sbjct: 2   STTIEIPAE---SSAVAKGKA--PLIGASSSSYEKKGGY--KKGIAIFDFILRLGAVISA 61

Query: 66  LAAAATMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVIVMGIVAGYV------------- 125
           L+AAATMGTS +TLPFFTQFFQFEA YDD PTFQFFVI MG V GY+             
Sbjct: 62  LSAAATMGTSDETLPFFTQFFQFEAGYDDFPTFQFFVIAMGFVGGYLVLSLPFSVVAIIR 121

Query: 126 ---------------VALALSTAAAGAAAAVVALAHSGNSSTNWLAVCNQFGDFCQQASG 182
                          VAL L+TAAA AAAA+V LAH+GN S NWLAVC QFGDFCQ+ SG
Sbjct: 122 PHAVGIRLLLLILDTVALTLNTAAAAAAAAIVYLAHNGNQSANWLAVCQQFGDFCQKVSG 181

[Close]

BLAST of Cp4.1LG10g04020 vs. ExPASy Swiss-Prot
Match: B9IIR4 (Casparian strip membrane protein 3 OS=Populus trichocarpa OX=3694 GN=POPTRDRAFT_907513 PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.6e-41
Identity = 106/204 (51.96%), Postives = 135/204 (66.18%), Query Frame = 0


Query: 6   SSAINVASETTNSGPIGKKKSTTPLLAAEVPIRPDRGTHRMKRGLAIFDIVLRIGALSSA 65
           S+ +++ ++T+ +      K T PL+AA   ++        K+GLAIFD+VLR+GA+ +A
Sbjct: 2   SARVDIPADTSAAA-----KGTAPLIAASTHVKGG-----YKKGLAIFDLVLRLGAVVTA 61

Query: 66  LAAAATMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVIVMGIVAGYV------------- 125
           LAAAATMGT+ QTLPFFTQFFQF+ASYDDLPTFQFFVI M IV+GY+             
Sbjct: 62  LAAAATMGTTDQTLPFFTQFFQFQASYDDLPTFQFFVIAMAIVSGYLVLSLPFSIVAIIR 121

Query: 126 ---------------VALALSTAAAGAAAAVVALAHSGNSSTNWLAVCNQFGDFCQQASG 182
                          VAL L+TAAA AA A+V LA +GNSS NWL +C QFGDFCQ+ASG
Sbjct: 122 PHATGPRLLLIILDTVALTLNTAAAAAAVAIVDLAQNGNSSANWLGICQQFGDFCQKASG 181

[Close]

BLAST of Cp4.1LG10g04020 vs. ExPASy Swiss-Prot
Match: P0DI43 (Casparian strip membrane protein 1 OS=Theobroma cacao OX=3641 PE=2 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.8e-40
Identity = 104/209 (49.76%), Postives = 132/209 (63.16%), Query Frame = 0


Query: 1   MKNAESSAINVASETTNSGPIGKKKSTTPLLAAEVPIRPDRGTHRMKRGLAIFDIVLRIG 60
           MK+ + +AI+V      S  + K K+  PL+A      P       K+GL IFD +LR+G
Sbjct: 1   MKSGDHAAIDV----PESSAVAKGKA--PLIAT-----PREQKSGFKKGLGIFDFLLRLG 60

Query: 61  ALSSALAAAATMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVIVMGIVAGY--------- 120
           A+ +ALAAAATMGTS +TLPFFTQFFQFEASYDDLPTF FFVI M ++ GY         
Sbjct: 61  AIIAALAAAATMGTSDETLPFFTQFFQFEASYDDLPTFMFFVIAMALIGGYLVLSLPFSI 120

Query: 121 -------------------VVALALSTAAAGAAAAVVALAHSGNSSTNWLAVCNQFGDFC 180
                              +VAL L+TAA  AAAA+V LAH+GN +TNWLA+C QFGDFC
Sbjct: 121 VTIVRPHAVAPRLLLFILDIVALTLTTAAGAAAAAIVYLAHNGNPNTNWLAICQQFGDFC 180

Query: 181 QQASGAVVGSFAAVLLFLLLILFSALSLK 182
           Q+ SGAVV SF  V++ + L+L S ++LK
Sbjct: 181 QEVSGAVVASFVTVVVLMSLVLLSGVALK 198

[Close]

BLAST of Cp4.1LG10g04020 vs. NCBI nr
Match: XP_023544952.1 (casparian strip membrane protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 322 bits (826), Expect = 6.38e-110
Identity = 184/212 (86.79%), Postives = 184/212 (86.79%), Query Frame = 0


Query: 1   MKNAESSAINVASETTNSGPIGKKKSTTPLLAAEVPIRPDRGTHRMKRGLAIFDIVLRIG 60
           MKNAESSAINVASETTNSGPIGKKKSTTPLLAAEVPIRPDRGTHRMKRGLAIFDIVLRIG
Sbjct: 1   MKNAESSAINVASETTNSGPIGKKKSTTPLLAAEVPIRPDRGTHRMKRGLAIFDIVLRIG 60

Query: 61  ALSSALAAAATMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVIVMGIVAGYVV------- 120
           ALSSALAAAATMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVIVMGIVAGYVV       
Sbjct: 61  ALSSALAAAATMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVIVMGIVAGYVVLSLPFSI 120

Query: 121 ---------------------ALALSTAAAGAAAAVVALAHSGNSSTNWLAVCNQFGDFC 180
                                ALALSTAAAGAAAAVVALAHSGNSSTNWLAVCNQFGDFC
Sbjct: 121 VCIIRPHAAGPRLLLLILDSVALALSTAAAGAAAAVVALAHSGNSSTNWLAVCNQFGDFC 180

Query: 181 QQASGAVVGSFAAVLLFLLLILFSALSLKNAH 184
           QQASGAVVGSFAAVLLFLLLILFSALSLKNAH
Sbjct: 181 QQASGAVVGSFAAVLLFLLLILFSALSLKNAH 212

[Close]

BLAST of Cp4.1LG10g04020 vs. NCBI nr
Match: XP_022977901.1 (casparian strip membrane protein 1 [Cucurbita maxima])

HSP 1 Score: 322 bits (826), Expect = 6.38e-110
Identity = 184/212 (86.79%), Postives = 184/212 (86.79%), Query Frame = 0


Query: 1   MKNAESSAINVASETTNSGPIGKKKSTTPLLAAEVPIRPDRGTHRMKRGLAIFDIVLRIG 60
           MKNAESSAINVASETTNSGPIGKKKSTTPLLAAEVPIRPDRGTHRMKRGLAIFDIVLRIG
Sbjct: 1   MKNAESSAINVASETTNSGPIGKKKSTTPLLAAEVPIRPDRGTHRMKRGLAIFDIVLRIG 60

Query: 61  ALSSALAAAATMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVIVMGIVAGYVV------- 120
           ALSSALAAAATMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVIVMGIVAGYVV       
Sbjct: 61  ALSSALAAAATMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVIVMGIVAGYVVLSIPFSI 120

Query: 121 ---------------------ALALSTAAAGAAAAVVALAHSGNSSTNWLAVCNQFGDFC 180
                                ALALSTAAAGAAAAVVALAHSGNSSTNWLAVCNQFGDFC
Sbjct: 121 VCIIRPHAAGPRLLLLILDSVALALSTAAAGAAAAVVALAHSGNSSTNWLAVCNQFGDFC 180

Query: 181 QQASGAVVGSFAAVLLFLLLILFSALSLKNAH 184
           QQASGAVVGSFAAVLLFLLLILFSALSLKNAH
Sbjct: 181 QQASGAVVGSFAAVLLFLLLILFSALSLKNAH 212

[Close]

BLAST of Cp4.1LG10g04020 vs. NCBI nr
Match: KAG6604335.1 (hypothetical protein SDJN03_04944, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 321 bits (822), Expect = 2.60e-109
Identity = 183/212 (86.32%), Postives = 183/212 (86.32%), Query Frame = 0


Query: 1   MKNAESSAINVASETTNSGPIGKKKSTTPLLAAEVPIRPDRGTHRMKRGLAIFDIVLRIG 60
           MKNAESSAINVASETTNSGPIGKKKSTTPLLAAEVPIRPDRGTHRMKRGLAIFDIVLRIG
Sbjct: 1   MKNAESSAINVASETTNSGPIGKKKSTTPLLAAEVPIRPDRGTHRMKRGLAIFDIVLRIG 60

Query: 61  ALSSALAAAATMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVIVMGIVAGYVV------- 120
           ALSSALAAAATMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVIVMGIVAGYVV       
Sbjct: 61  ALSSALAAAATMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVIVMGIVAGYVVLSLPFSI 120

Query: 121 ---------------------ALALSTAAAGAAAAVVALAHSGNSSTNWLAVCNQFGDFC 180
                                ALALSTAAAGAAAAVVALAHSGNSSTNWLAVCNQFGDFC
Sbjct: 121 VCIIRPHAAGPRLLLLILDSVALALSTAAAGAAAAVVALAHSGNSSTNWLAVCNQFGDFC 180

Query: 181 QQASGAVVGSFAAVLLFLLLILFSALSLKNAH 184
           QQASGAVVGSFAAVLLFLLLILFSALSLKN H
Sbjct: 181 QQASGAVVGSFAAVLLFLLLILFSALSLKNGH 212

[Close]

BLAST of Cp4.1LG10g04020 vs. NCBI nr
Match: KAG7034486.1 (hypothetical protein SDJN02_04216, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 320 bits (821), Expect = 3.69e-109
Identity = 183/212 (86.32%), Postives = 184/212 (86.79%), Query Frame = 0


Query: 1   MKNAESSAINVASETTNSGPIGKKKSTTPLLAAEVPIRPDRGTHRMKRGLAIFDIVLRIG 60
           MKNAESSAINVASETTNSGPIGKKKSTTPLLAAEVPIRPDRGTHRMKRGLAIFDIVLRIG
Sbjct: 1   MKNAESSAINVASETTNSGPIGKKKSTTPLLAAEVPIRPDRGTHRMKRGLAIFDIVLRIG 60

Query: 61  ALSSALAAAATMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVIVMGIVAGYVV------- 120
           ALSSALAAAATMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVIVMGIVAGYVV       
Sbjct: 61  ALSSALAAAATMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVIVMGIVAGYVVLSLPFSI 120

Query: 121 ---------------------ALALSTAAAGAAAAVVALAHSGNSSTNWLAVCNQFGDFC 180
                                ALALSTAAAGAAAAVVALAHSGNSSTNWLAVCNQFGDFC
Sbjct: 121 VCIIRPHAAGPRLLLLILDSVALALSTAAAGAAAAVVALAHSGNSSTNWLAVCNQFGDFC 180

Query: 181 QQASGAVVGSFAAVLLFLLLILFSALSLKNAH 184
           QQASGAVVGSFAAVLLFLLLILFSALSLK+AH
Sbjct: 181 QQASGAVVGSFAAVLLFLLLILFSALSLKSAH 212

[Close]

BLAST of Cp4.1LG10g04020 vs. NCBI nr
Match: XP_022926164.1 (casparian strip membrane protein 1-like [Cucurbita moschata])

HSP 1 Score: 319 bits (818), Expect = 1.06e-108
Identity = 183/212 (86.32%), Postives = 183/212 (86.32%), Query Frame = 0


Query: 1   MKNAESSAINVASETTNSGPIGKKKSTTPLLAAEVPIRPDRGTHRMKRGLAIFDIVLRIG 60
           MKNAESSAINVASETTNSG IGKKKSTTPLLAAEVPIRPDRGTHRMKRGLAIFDIVLRIG
Sbjct: 1   MKNAESSAINVASETTNSGSIGKKKSTTPLLAAEVPIRPDRGTHRMKRGLAIFDIVLRIG 60

Query: 61  ALSSALAAAATMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVIVMGIVAGYVV------- 120
           ALSSALAAAATMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVIVMGIVAGYVV       
Sbjct: 61  ALSSALAAAATMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVIVMGIVAGYVVLSLPFSI 120

Query: 121 ---------------------ALALSTAAAGAAAAVVALAHSGNSSTNWLAVCNQFGDFC 180
                                ALALSTAAAGAAAAVVALAHSGNSSTNWLAVCNQFGDFC
Sbjct: 121 VCIIRPHAAGPRLLLLILDSVALALSTAAAGAAAAVVALAHSGNSSTNWLAVCNQFGDFC 180

Query: 181 QQASGAVVGSFAAVLLFLLLILFSALSLKNAH 184
           QQASGAVVGSFAAVLLFLLLILFSALSLKNAH
Sbjct: 181 QQASGAVVGSFAAVLLFLLLILFSALSLKNAH 212

[Close]

BLAST of Cp4.1LG10g04020 vs. ExPASy TrEMBL
Match: A0A6J1IL91 (CASP-like protein OS=Cucurbita maxima OX=3661 GN=LOC111478054 PE=3 SV=1)

HSP 1 Score: 322 bits (826), Expect = 3.09e-110
Identity = 184/212 (86.79%), Postives = 184/212 (86.79%), Query Frame = 0


Query: 1   MKNAESSAINVASETTNSGPIGKKKSTTPLLAAEVPIRPDRGTHRMKRGLAIFDIVLRIG 60
           MKNAESSAINVASETTNSGPIGKKKSTTPLLAAEVPIRPDRGTHRMKRGLAIFDIVLRIG
Sbjct: 1   MKNAESSAINVASETTNSGPIGKKKSTTPLLAAEVPIRPDRGTHRMKRGLAIFDIVLRIG 60

Query: 61  ALSSALAAAATMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVIVMGIVAGYVV------- 120
           ALSSALAAAATMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVIVMGIVAGYVV       
Sbjct: 61  ALSSALAAAATMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVIVMGIVAGYVVLSIPFSI 120

Query: 121 ---------------------ALALSTAAAGAAAAVVALAHSGNSSTNWLAVCNQFGDFC 180
                                ALALSTAAAGAAAAVVALAHSGNSSTNWLAVCNQFGDFC
Sbjct: 121 VCIIRPHAAGPRLLLLILDSVALALSTAAAGAAAAVVALAHSGNSSTNWLAVCNQFGDFC 180

Query: 181 QQASGAVVGSFAAVLLFLLLILFSALSLKNAH 184
           QQASGAVVGSFAAVLLFLLLILFSALSLKNAH
Sbjct: 181 QQASGAVVGSFAAVLLFLLLILFSALSLKNAH 212

[Close]

BLAST of Cp4.1LG10g04020 vs. ExPASy TrEMBL
Match: A0A6J1EEC6 (CASP-like protein OS=Cucurbita moschata OX=3662 GN=LOC111433348 PE=3 SV=1)

HSP 1 Score: 319 bits (818), Expect = 5.11e-109
Identity = 183/212 (86.32%), Postives = 183/212 (86.32%), Query Frame = 0


Query: 1   MKNAESSAINVASETTNSGPIGKKKSTTPLLAAEVPIRPDRGTHRMKRGLAIFDIVLRIG 60
           MKNAESSAINVASETTNSG IGKKKSTTPLLAAEVPIRPDRGTHRMKRGLAIFDIVLRIG
Sbjct: 1   MKNAESSAINVASETTNSGSIGKKKSTTPLLAAEVPIRPDRGTHRMKRGLAIFDIVLRIG 60

Query: 61  ALSSALAAAATMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVIVMGIVAGYVV------- 120
           ALSSALAAAATMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVIVMGIVAGYVV       
Sbjct: 61  ALSSALAAAATMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVIVMGIVAGYVVLSLPFSI 120

Query: 121 ---------------------ALALSTAAAGAAAAVVALAHSGNSSTNWLAVCNQFGDFC 180
                                ALALSTAAAGAAAAVVALAHSGNSSTNWLAVCNQFGDFC
Sbjct: 121 VCIIRPHAAGPRLLLLILDSVALALSTAAAGAAAAVVALAHSGNSSTNWLAVCNQFGDFC 180

Query: 181 QQASGAVVGSFAAVLLFLLLILFSALSLKNAH 184
           QQASGAVVGSFAAVLLFLLLILFSALSLKNAH
Sbjct: 181 QQASGAVVGSFAAVLLFLLLILFSALSLKNAH 212

[Close]

BLAST of Cp4.1LG10g04020 vs. ExPASy TrEMBL
Match: A0A0A0KKJ8 (CASP-like protein OS=Cucumis sativus OX=3659 GN=Csa_6G453800 PE=3 SV=1)

HSP 1 Score: 280 bits (716), Expect = 1.69e-93
Identity = 159/212 (75.00%), Postives = 171/212 (80.66%), Query Frame = 0


Query: 1   MKNAESSAINVASETTNSGPIGKKKSTTPLLAAEVPIRPDRGTHRMKRGLAIFDIVLRIG 60
           MK  ES++I++A ET NSGPIGKKKSTTPLLAA VP+  DRGTHRMKRGL+IFD VLRIG
Sbjct: 1   MKTGESTSIDIAPETNNSGPIGKKKSTTPLLAAPVPVT-DRGTHRMKRGLSIFDFVLRIG 60

Query: 61  ALSSALAAAATMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVIVMGIVAGYVV------- 120
            L+SALAAAATMGTS QTLPFFTQFFQFEASYDDLPTFQFFV+ M +VAGYVV       
Sbjct: 61  VLASALAAAATMGTSDQTLPFFTQFFQFEASYDDLPTFQFFVVAMAVVAGYVVLSIPFSI 120

Query: 121 ---------------------ALALSTAAAGAAAAVVALAHSGNSSTNWLAVCNQFGDFC 180
                                AL L+TAAAGAAAAVV+LAHSGNSSTNWLAVCNQFGDFC
Sbjct: 121 VCIIRPHAAGPRVLLLILDSVALTLNTAAAGAAAAVVSLAHSGNSSTNWLAVCNQFGDFC 180

Query: 181 QQASGAVVGSFAAVLLFLLLILFSALSLKNAH 184
           QQASGAVVGSFAAVLLFLLLILFSALSLKN+H
Sbjct: 181 QQASGAVVGSFAAVLLFLLLILFSALSLKNSH 211

[Close]

BLAST of Cp4.1LG10g04020 vs. ExPASy TrEMBL
Match: A0A6J1BV79 (CASP-like protein OS=Momordica charantia OX=3673 GN=LOC111005840 PE=3 SV=1)

HSP 1 Score: 280 bits (716), Expect = 1.75e-93
Identity = 158/209 (75.60%), Postives = 170/209 (81.34%), Query Frame = 0


Query: 2   KNAESSAINVASETTNSGPIGKKKSTTPLLAAEVPIRPDRGTHRMKRGLAIFDIVLRIGA 61
           KN+ES+AI+VA E  NSGPIGKKKSTTPLLAA VP+R DRGTHRMKRGLAIFD VLRIGA
Sbjct: 3   KNSESTAIDVAPENPNSGPIGKKKSTTPLLAAPVPVRQDRGTHRMKRGLAIFDFVLRIGA 62

Query: 62  LSSALAAAATMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVIVMGIVAGYVV-------- 121
           L++ALAAAA MGTS +TLPFFTQFFQFEASYDDLPTFQFFVI MGIVAGYVV        
Sbjct: 63  LAAALAAAAAMGTSDETLPFFTQFFQFEASYDDLPTFQFFVIAMGIVAGYVVLSIPFSIV 122

Query: 122 --------------------ALALSTAAAGAAAAVVALAHSGNSSTNWLAVCNQFGDFCQ 181
                               AL L+T AAGAAAAVV+LAHSGNSSTNWLA+CNQFGDFCQ
Sbjct: 123 CIVRPHAVGPRLLLLILDSVALTLTTVAAGAAAAVVSLAHSGNSSTNWLAICNQFGDFCQ 182

[Close]

BLAST of Cp4.1LG10g04020 vs. ExPASy TrEMBL
Match: A0A5A7SKE2 (CASP-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold541G00860 PE=3 SV=1)

HSP 1 Score: 278 bits (711), Expect = 9.09e-93
Identity = 159/212 (75.00%), Postives = 169/212 (79.72%), Query Frame = 0


Query: 1   MKNAESSAINVASETTNSGPIGKKKSTTPLLAAEVPIRPDRGTHRMKRGLAIFDIVLRIG 60
           MK  ES+AI++A ET NSGPIGKKKSTTPLLAA VP   DRGTHRMKRGLAIFD VLRIG
Sbjct: 1   MKTGESTAIDIAPETNNSGPIGKKKSTTPLLAAPVP---DRGTHRMKRGLAIFDFVLRIG 60

Query: 61  ALSSALAAAATMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVIVMGIVAGYVV------- 120
            L+SALAAAA MGTS QTLPFFTQFFQFEASYDDLPTFQFFV+ M +VAGYVV       
Sbjct: 61  VLASALAAAAAMGTSEQTLPFFTQFFQFEASYDDLPTFQFFVVAMAVVAGYVVLSIPFSI 120

Query: 121 ---------------------ALALSTAAAGAAAAVVALAHSGNSSTNWLAVCNQFGDFC 180
                                AL L+TAAAGAAAAVV+LAHSGNSSTNWLA+CNQFGDFC
Sbjct: 121 VCIIRPHAAGPRVLLLILDSVALTLNTAAAGAAAAVVSLAHSGNSSTNWLAICNQFGDFC 180

Query: 181 QQASGAVVGSFAAVLLFLLLILFSALSLKNAH 184
           QQASGAVVGSFAAVLLFLLLILFSALSLKN+H
Sbjct: 181 QQASGAVVGSFAAVLLFLLLILFSALSLKNSH 209

[Close]

BLAST of Cp4.1LG10g04020 vs. TAIR 10
Match: AT5G06200.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 166.4 bits (420), Expect = 2.2e-41
Identity = 104/206 (50.49%), Postives = 134/206 (65.05%), Query Frame = 0


Query: 4   AESSAINVASETTNSGPIGKKKSTTPLLAAEVPIRPDRGTHRMKRGLAIFDIVLRIGALS 63
           ++S A++V +E+++       K   PLL      R   G+   KRGL+IFD +LR+ A+ 
Sbjct: 3   SDSIAVDVPAESSS-----VIKGKAPLLGL---ARDHTGSGGYKRGLSIFDFLLRLAAIV 62

Query: 64  SALAAAATMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVIVMGIVAGYVV---------- 123
           +ALAAAATMGTS +TLPFFTQF QFEASYDDLPTFQFFV+ + IVAGY+V          
Sbjct: 63  AALAAAATMGTSDETLPFFTQFLQFEASYDDLPTFQFFVVAIAIVAGYLVLSLPFSVVTI 122

Query: 124 ------------------ALALSTAAAGAAAAVVALAHSGNSSTNWLAVCNQFGDFCQQA 182
                             ALAL TAAA AAAA+V LAH+GN++TNWL +C QFGDFCQ+ 
Sbjct: 123 VRPLAVAPRLLLLVLDTAALALDTAAASAAAAIVYLAHNGNTNTNWLPICQQFGDFCQKT 182

[Close]

BLAST of Cp4.1LG10g04020 vs. TAIR 10
Match: AT3G11550.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 162.2 bits (409), Expect = 4.1e-40
Identity = 103/209 (49.28%), Postives = 134/209 (64.11%), Query Frame = 0


Query: 1   MKNAESSAINVASETTNSGPIGKKKSTTPLLAAEVPIRPDRGTHRMKRGLAIFDIVLRIG 60
           MKN ES+ I+V +E++++      K   PL+          G+    RGLAIFD +LR+ 
Sbjct: 1   MKN-ESTFIDVPAESSSA-----MKGKAPLIGV-ARDHTTSGSGGYNRGLAIFDFLLRLA 60

Query: 61  ALSSALAAAATMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVIVMGIVAGYVV------- 120
           A+ +ALAAAATMGTS +TLPFFTQF QFEASYDDLPTFQFFVI M +V GY+V       
Sbjct: 61  AIVAALAAAATMGTSDETLPFFTQFLQFEASYDDLPTFQFFVIAMALVGGYLVLSLPISV 120

Query: 121 ---------------------ALALSTAAAGAAAAVVALAHSGNSSTNWLAVCNQFGDFC 180
                                 LAL+TAAA +AAA+  LAHSGN +TNWL +C QFGDFC
Sbjct: 121 VTILRPLATAPRLLLLVLDTGVLALNTAAASSAAAISYLAHSGNQNTNWLPICQQFGDFC 180

Query: 181 QQASGAVVGSFAAVLLFLLLILFSALSLK 182
           Q++SGAVV +F +V+ F +L++ S ++LK
Sbjct: 181 QKSSGAVVSAFVSVVFFTILVVISGVALK 202

[Close]

BLAST of Cp4.1LG10g04020 vs. TAIR 10
Match: AT2G36100.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 136.7 bits (343), Expect = 1.8e-32
Identity = 78/163 (47.85%), Postives = 104/163 (63.80%), Query Frame = 0


Query: 47  KRGLAIFDIVLRIGALSSALAAAATMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVIVMG 106
           KRGLAIFD +LR+ A++  + AA+ M T+ +TLPFFTQF QF+A YDDLP FQ+FVI + 
Sbjct: 42  KRGLAIFDFLLRLAAIAVTIGAASVMYTAEETLPFFTQFLQFQAGYDDLPAFQYFVIAVA 101

Query: 107 IVAGYVV----------------------------ALALSTAAAGAAAAVVALAHSGNSS 166
           +VA Y+V                             + L+T+AA AAA++  LAH+GN S
Sbjct: 102 VVASYLVLSLPFSIVSIVRPHAVAPRLILLICDTLVVTLNTSAAAAAASITYLAHNGNQS 161

Query: 167 TNWLAVCNQFGDFCQQASGAVVGSFAAVLLFLLLILFSALSLK 182
           TNWL +C QFGDFCQ  S AVV    A+L F++LI+ SA++LK
Sbjct: 162 TNWLPICQQFGDFCQNVSTAVVADSIAILFFIVLIIISAIALK 204

[Close]

BLAST of Cp4.1LG10g04020 vs. TAIR 10
Match: AT2G27370.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 134.0 bits (336), Expect = 1.2e-31
Identity = 83/163 (50.92%), Postives = 101/163 (61.96%), Query Frame = 0


Query: 47  KRGLAIFDIVLRIGALSSALAAAATMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVIVMG 106
           KRG+AIFD VLR+ A  +A+AAAA M T+ +TLPFFTQF QF+A Y DLPT   FVIV  
Sbjct: 56  KRGVAIFDFVLRLIAAITAMAAAAKMATTEETLPFFTQFLQFQADYTDLPTMSSFVIVNS 115

Query: 107 IVAGYV----------------------------VALALSTAAAGAAAAVVALAHSGNSS 166
           IV GY+                            V + L+  AA A+AA+V LAH+GNSS
Sbjct: 116 IVGGYLTLSLPFSIVCILRPLAVPPRLFLILCDTVMMGLTLMAASASAAIVYLAHNGNSS 175

Query: 167 TNWLAVCNQFGDFCQQASGAVVGSFAAVLLFLLLILFSALSLK 182
           +NWL VC QFGDFCQ  SGAVV SF A  L + L++ SA +LK
Sbjct: 176 SNWLPVCQQFGDFCQGTSGAVVASFIAATLLMFLVILSAFALK 218

[Close]

BLAST of Cp4.1LG10g04020 vs. TAIR 10
Match: AT5G15290.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 124.0 bits (310), Expect = 1.2e-28
Identity = 70/167 (41.92%), Postives = 100/167 (59.88%), Query Frame = 0


Query: 46  MKRGLAIFDIVLRIGALSSALAAAATMGTSGQTLPFFTQFFQFEASYDDLPTFQFFVIVM 105
           M R +AI + +LRI A  + + +A  MGT+ +TLPFFTQF +F+A Y+DLP   FFV+  
Sbjct: 21  MSRRIAILEFILRIVAFFNTIGSAILMGTTHETLPFFTQFIRFQAEYNDLPALTFFVVAN 80

Query: 106 GIVAGY----------------------------VVALALSTAAAGAAAAVVALAHSGNS 165
            +V+GY                            V  L L T+ A +AAA+V LAH+GN+
Sbjct: 81  AVVSGYLILSLTLAFVHIVKRKTQNTRILLIILDVAMLGLLTSGASSAAAIVYLAHNGNN 140

Query: 166 STNWLAVCNQFGDFCQQASGAVVGSFAAVLLFLLLILFSALSLKNAH 185
            TNW A+C QF  FC++ SG+++GSF A++L +LLIL SA++L   H
Sbjct: 141 KTNWFAICQQFNSFCERISGSLIGSFIAIVLLILLILLSAIALSRRH 187

The following BLAST results are available for this feature:

BLAST of Cp4.1LG10g04020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0DI61	3.6e-73	75.00	Casparian strip membrane protein 1 OS=Cucumis melo OX=3656 PE=2 SV=1	[more]
B9IIR5	1.5e-42	55.68	Casparian strip membrane protein 2 OS=Populus trichocarpa OX=3694 GN=POPTRDRAFT_...	[more]
B9SX12	4.3e-42	52.45	Casparian strip membrane protein 1 OS=Ricinus communis OX=3988 GN=RCOM_1259250 P...	[more]
B9IIR4	1.6e-41	51.96	Casparian strip membrane protein 3 OS=Populus trichocarpa OX=3694 GN=POPTRDRAFT_...	[more]
P0DI43	1.8e-40	49.76	Casparian strip membrane protein 1 OS=Theobroma cacao OX=3641 PE=2 SV=1	[more]

BLAST of Cp4.1LG10g04020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023544952.1	6.38e-110	86.79	casparian strip membrane protein 1 [Cucurbita pepo subsp. pepo]	[more]
XP_022977901.1	6.38e-110	86.79	casparian strip membrane protein 1 [Cucurbita maxima]	[more]
KAG6604335.1	2.60e-109	86.32	hypothetical protein SDJN03_04944, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7034486.1	3.69e-109	86.32	hypothetical protein SDJN02_04216, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022926164.1	1.06e-108	86.32	casparian strip membrane protein 1-like [Cucurbita moschata]	[more]

BLAST of Cp4.1LG10g04020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IL91	3.09e-110	86.79	CASP-like protein OS=Cucurbita maxima OX=3661 GN=LOC111478054 PE=3 SV=1	[more]
A0A6J1EEC6	5.11e-109	86.32	CASP-like protein OS=Cucurbita moschata OX=3662 GN=LOC111433348 PE=3 SV=1	[more]
A0A0A0KKJ8	1.69e-93	75.00	CASP-like protein OS=Cucumis sativus OX=3659 GN=Csa_6G453800 PE=3 SV=1	[more]
A0A6J1BV79	1.75e-93	75.60	CASP-like protein OS=Momordica charantia OX=3673 GN=LOC111005840 PE=3 SV=1	[more]
A0A5A7SKE2	9.09e-93	75.00	CASP-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold541G00...	[more]

BLAST of Cp4.1LG10g04020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06200.1	2.2e-41	50.49	Uncharacterised protein family (UPF0497)	[more]
AT3G11550.1	4.1e-40	49.28	Uncharacterised protein family (UPF0497)	[more]
AT2G36100.1	1.8e-32	47.85	Uncharacterised protein family (UPF0497)	[more]
AT2G27370.1	1.2e-31	50.92	Uncharacterised protein family (UPF0497)	[more]
AT5G15290.1	1.2e-28	41.92	Uncharacterised protein family (UPF0497)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006702	Casparian strip membrane protein domain	PFAM	PF04535	DUF588	coord: 48..116 e-value: 4.1E-16 score: 59.1
IPR006459	Casparian strip membrane protein	TIGRFAM	TIGR01569	TIGR01569	coord: 113..179 e-value: 1.5E-17 score: 61.8 coord: 55..113 e-value: 9.3E-12 score: 43.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	PANTHER	PTHR11615	NITRATE, FORMATE, IRON DEHYDROGENASE	coord: 19..113
None	No IPR available	PANTHER	PTHR11615:SF281	CASPARIAN STRIP MEMBRANE PROTEIN 3	coord: 19..113 coord: 113..182
None	No IPR available	PANTHER	PTHR11615	NITRATE, FORMATE, IRON DEHYDROGENASE	coord: 113..182

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG10g04020.1	Cp4.1LG10g04020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007043	cell-cell junction assembly
biological_process	GO:0042545	cell wall modification
cellular_component	GO:0048226	Casparian strip
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding