Cp4.1LG10g03950 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG10g03950
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	vacuolar protein sorting-associated protein 55 homolog isoform X1
Location	Cp4.1LG10: 1722635 .. 1725277 (-)
RNA-Seq Expression	Cp4.1LG10g03950
Synteny	Cp4.1LG10g03950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCCAAAAGAAAGAAGAAGAAGAAGAATCCCTCTTAGGCCGGACCTCAATTCTTGCCTTCTTCGTCGCGATTGAGGGCAAGAATCATCGCGCATCGCTGCTGCCGGAACTTCTAGCTGATTGTAATGGCGATGACATTAGAAGGTACAGTTTGCAAATTTTCCATATTAATTTGATTTCTTGCGATGATAAGCCAGTTACTGAACTGAATTTTTGCCGGCTTAAGGATGAGCGCTTTAGAATTTATGCGTAAACTTAGTCTTATACCAGGTTTCCGAACGATGGATTTTCGTCGACTAAGAATTTATTTGTTCGCAGCTATTATGGAACGAGGGATTTAAGGGAGCAGTGTCGATTTGAATTTATTGGGAAATTGTTGGGGATTGTATCTTCTATCTCGTATTTGAATGAAGTTGTGGACATGGGGAGAATCATGCATGACACAGGAACGGCTAGTCTGAGGGGATTTTTCATTGTTCATAAACTGTTGTTGAATTTTCGTCGATGTTCTTAAGTACTTTATTCTCTGTATGGTAGTTACAGAATGTATGGAGCAAGAAAATGCAAAAACCCTTCCTGAATAGGATTGAAAGTGATCCCATGATCTTGAATTTGAGTGTGTGATCCCAATCGGTTTGAGAGGGGAACAAAATATTCCTTATAAGAGTGTGGAAACCTCTCCCTAATAGATGTGTTTTAAAGTCGTGAGGCTGACGGTGATACGTAACGGGCTTAAGGCAACGAAGCATTCCTTATAAGGGTGTGGAAAACTTTTTCCTAACAGACACGTTTTAAAATCATGAGGTTGACGGCGATATGTAATAGGCCAAAGCAAAGCAGACAATATCTGGTAGCGGTGGGTTTGGGCTGTTACACATGGTATGAGAGACAAATATCGGGCGGTGTGCCAGCAAGGACGCCAGACCCCCAAGGAAGTGGATTGTGAGATCCCATATTGGTTGGAGAGGAGAACGAAACATTCCTTATATGTATGTGGAAACCTCTCCGTAACAGACGCGTTATAAAACCGTGAGGCTGATGACGATACCTAATGGGCCAAAGCGGACAATATCCGCTAGCGACAGGCTTGGGCTGTTACATTAAGTTTATCTCCCTGTCTATTGAGAACAAATATAAGTATATCTAATAACCTGCAAAATCAGGTCAAAACCATTCTCAATGAAGCTGTACAAAGTGATTCCATTTTCTAGCTTTGAGATATCAGTATATTTGTTAATTGTTCTTAACATGGTTGTTGGTCAATACTATATACCACTGCCCTAGAGTTTCATTTAAACCATTTGGTCCATTTGTTGCTCGTTTTCGCCTTTAGATGTATCTGTCATTTAACGTTAACTAATGTTTTTGATCTTCATTGGGCGGTGGCTCGTGCTGTTCGGGGAACGTGGATGGACCTCATTTCTGCAGTGTGAGTCGAATTTGTCAATACTCTGTAACCATAGTTCTGTTTTCTGATGTCTAACTTTATGAAAAAAATCTAAGAAAACGTCCCTCGGTCGCGCAGGTTAGCTGGGCTCGCGTTTATGTTTTCTTCTAGCATCTTGCTACAGATTTTGGTATGTTTTATAGTACACTTGTAATGGTTCTCTATCAGGAGGATTCCCTTTTATCTCTCAGTATGATTGTTAGAATTTTGAACGACTATTTTTCACCTGATTTTGTTATCATCCTGGCAGGCTTGTGCACTATACAACAATTGGTGGCCTTTGCTATCAGGTGAACATTAAGTTTGTTAGTTTTCAATCGATAACTTCTAATGACTGCTAAGCATGTTTTCTCTGCAGCGTTGATGTACGTGCTCGTTCCAATGCCATGTTTATTTTTTGGAGGCGGGTCGACGCAGTTTCTGATTAGCCGAGACGGTGGAGGGTGAGTATCTCTTAAGCATTCATATTGAAAATAGGTTCTCTTCAATTAAATGAACTAACCTTATGGAGATATGCTTGTGTCCTGGTTTTTGAGAAACACGATGTTCTTATTAATGATATCGTGATGCAAGTATATCGACAGTATTCGTTATATCTCGTGGTGTCACCCCTTGCATACACTCCCATCGATTAATTGTATCGCTTCATTTAGAAGTCCACATCATTGTGCTTACAAAGATTGAAAACGTAACAATACCAACACTCGAGTGCCTCGTCCTTCCCTTCGTGTTCTAACTTTTATCCTTCTTTCTGGCTGGTGTTCGTGTCGTTGCAACTTTCTAGATGGATAGGTGCTGCTAAGTTCTTGACAGGAGCGTCAACCGTTGGGAGTTTGGCAATTCCTATTATCCTGAGGCATGCTCAGATGATCGACACAGGAGCCATGTTCATAGAATTCGTTTCGTTCTTCATTTTTGTTTGCACTGTGTTGTGCTTCCACCGTGTTAGCCTTGAAGATGATTGGTGATCCCATATTAATTCCAGAAGATTACAACAATTTCTTGTGTTAAATTTTAATGCGTTTCTTTTGAACAGTTGATAACAAGAAGAAACTTGCAGTGGGGGAAAGGAAACCGAGTTCTAAGTTTCTCATATGTAAATTAATCTAATGTATGATAGTAGTTCTCTTTTTTTCTTCTGTTCTTATTCTGTTCTATTAATGCTTGTGAATGGAAATAAATCAGTATTTGGCAAAT

mRNA sequence

AGCCAAAAGAAAGAAGAAGAAGAAGAATCCCTCTTAGGCCGGACCTCAATTCTTGCCTTCTTCGTCGCGATTGAGGGCAAGAATCATCGCGCATCGCTGCTGCCGGAACTTCTAGCTGATTGTAATGGCGATGACATTAGAAGATGTATCTGTCATTTAACGTTAACTAATGTTTTTGATCTTCATTGGGCGGTGGCTCGTGCTGTTCGGGGAACGTGGATGGACCTCATTTCTGCAGTGTTAGCTGGGCTCGCGTTTATGTTTTCTTCTAGCATCTTGCTACAGATTTTGGCTTGTGCACTATACAACAATTGGTGGCCTTTGCTATCAGCGTTGATGTACGTGCTCGTTCCAATGCCATGTTTATTTTTTGGAGGCGGGTCGACGCAGTTTCTGATTAGCCGAGACGGTGGAGGATGGATAGGTGCTGCTAAGTTCTTGACAGGAGCGTCAACCGTTGGGAGTTTGGCAATTCCTATTATCCTGAGGCATGCTCAGATGATCGACACAGGAGCCATGTTCATAGAATTCGTTTCGTTCTTCATTTTTGTTTGCACTGTGTTGTGCTTCCACCGTGTTAGCCTTGAAGATGATTGGTGATCCCATATTAATTCCAGAAGATTACAACAATTTCTTGTGTTAAATTTTAATGCGTTTCTTTTGAACAGTTGATAACAAGAAGAAACTTGCAGTGGGGGAAAGGAAACCGAGTTCTAAGTTTCTCATATGTAAATTAATCTAATGTATGATAGTAGTTCTCTTTTTTTCTTCTGTTCTTATTCTGTTCTATTAATGCTTGTGAATGGAAATAAATCAGTATTTGGCAAAT

Coding sequence (CDS)

AGCCAAAAGAAAGAAGAAGAAGAAGAATCCCTCTTAGGCCGGACCTCAATTCTTGCCTTCTTCGTCGCGATTGAGGGCAAGAATCATCGCGCATCGCTGCTGCCGGAACTTCTAGCTGATTGTAATGGCGATGACATTAGAAGATGTATCTGTCATTTAACGTTAACTAATGTTTTTGATCTTCATTGGGCGGTGGCTCGTGCTGTTCGGGGAACGTGGATGGACCTCATTTCTGCAGTGTTAGCTGGGCTCGCGTTTATGTTTTCTTCTAGCATCTTGCTACAGATTTTGGCTTGTGCACTATACAACAATTGGTGGCCTTTGCTATCAGCGTTGATGTACGTGCTCGTTCCAATGCCATGTTTATTTTTTGGAGGCGGGTCGACGCAGTTTCTGATTAGCCGAGACGGTGGAGGATGGATAGGTGCTGCTAAGTTCTTGACAGGAGCGTCAACCGTTGGGAGTTTGGCAATTCCTATTATCCTGAGGCATGCTCAGATGATCGACACAGGAGCCATGTTCATAGAATTCGTTTCGTTCTTCATTTTTGTTTGCACTGTGTTGTGCTTCCACCGTGTTAGCCTTGAAGATGATTGGTGA

Protein sequence

SQKKEEEEESLLGRTSILAFFVAIEGKNHRASLLPELLADCNGDDIRRCICHLTLTNVFDLHWAVARAVRGTWMDLISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW

Homology

[Close]

BLAST of Cp4.1LG10g03950 vs. ExPASy Swiss-Prot
Match: Q9AST6 (Vacuolar protein sorting-associated protein 55 homolog OS=Arabidopsis thaliana OX=3702 GN=At1g32410 PE=2 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 5.5e-27
Identity = 60/108 (55.56%), Postives = 80/108 (74.07%), Query Frame = 0


Query: 81  LAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGW 140
           +A LA + S+ I+LQILACAL+NNWWP+LS +MYVL+PMP LFFGG  +  L +     W
Sbjct: 17  IAFLAILVSTGIVLQILACALFNNWWPMLSVIMYVLLPMPLLFFGGSDSTSLFNESDNSW 76

Query: 141 IGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCTVL 189
           I AAKFLTGAS VGS+AIP IL+HA +I  GA+ ++  S+ +F+  +L
Sbjct: 77  INAAKFLTGASAVGSVAIPSILKHAGLIGWGALALDLSSYVVFLVAIL 124

[Close]

BLAST of Cp4.1LG10g03950 vs. ExPASy Swiss-Prot
Match: P47111 (Vacuolar protein sorting-associated protein 55 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=VPS55 PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 7.7e-05
Identity = 31/113 (27.43%), Postives = 56/113 (49.56%), Query Frame = 0


Query: 81  LAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGS---TQFLISRDG 140
           +  L+   +   LL IL+CAL++N++PL   L+++L P+P   F  G+   T   +S   
Sbjct: 12  IISLSGFLALGFLLVILSCALFHNYYPLFDILIFLLAPIPNTIFNAGNKYHTSDFMSDSS 71

Query: 141 GGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCTVLCF 191
                 A FLTG      +A+P++  H Q+I   +  +  +   I   +++ F
Sbjct: 72  NTGQDLAHFLTGMLVTSGIALPVVFYHCQLIGHLSCIMCMIGGLIIYSSIVIF 124

[Close]

BLAST of Cp4.1LG10g03950 vs. ExPASy Swiss-Prot
Match: Q9UUH1 (Vacuolar protein sorting-associated protein 55 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=vps55 PE=3 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 1.3e-04
Identity = 30/119 (25.21%), Postives = 58/119 (48.74%), Query Frame = 0


Query: 81  LAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQF-LISRDGGG 140
           + GL+ + +   +L IL+CAL+ NW+PLL  + ++L P+P L     ST    +  +   
Sbjct: 7   IIGLSSVLAVGFMLVILSCALFKNWYPLLIVIPFILAPLPNLLTKKYSTSHDFLQEEDRN 66

Query: 141 WIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDD 199
            +   +F  GA+     A+PI+  +  +I T A  +  V   I    +  + +  ++ +
Sbjct: 67  LLDFGRFTFGATICTGFALPIVFVNVGLIGTAAATMSCVGGSIIFLVITLYSQAFVQHE 125

[Close]

BLAST of Cp4.1LG10g03950 vs. NCBI nr
Match: KAG6604338.1 (Vacuolar protein sorting-associated protein 55-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 296 bits (757), Expect = 2.75e-99
Identity = 148/152 (97.37%), Postives = 148/152 (97.37%), Query Frame = 0


Query: 48  RCICHLTLTNVFDLHWAVARAVRGTWMDLISAVLAGLAFMFSSSILLQILACALYNNWWP 107
           R ICHLTLTNV DLH  VARAVRGTWMDLISAVLAGLAFMFSSSILLQILACALYNNWWP
Sbjct: 52  RYICHLTLTNVLDLHRVVARAVRGTWMDLISAVLAGLAFMFSSSILLQILACALYNNWWP 111

Query: 108 LLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQM 167
           LLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQM
Sbjct: 112 LLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQM 171

Query: 168 IDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW 199
           IDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
Sbjct: 172 IDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW 203

[Close]

BLAST of Cp4.1LG10g03950 vs. NCBI nr
Match: XP_022926166.1 (vacuolar protein sorting-associated protein 55 homolog isoform X1 [Cucurbita moschata])

HSP 1 Score: 293 bits (751), Expect = 1.83e-98
Identity = 147/152 (96.71%), Postives = 147/152 (96.71%), Query Frame = 0


Query: 48  RCICHLTLTNVFDLHWAVARAVRGTWMDLISAVLAGLAFMFSSSILLQILACALYNNWWP 107
           R ICHLTLTNV DLH  VARAVRGTWMDLISAVLAGLAFMFSSSILLQILACALYNNWWP
Sbjct: 46  RYICHLTLTNVLDLHRVVARAVRGTWMDLISAVLAGLAFMFSSSILLQILACALYNNWWP 105

Query: 108 LLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQM 167
           LLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQM
Sbjct: 106 LLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQM 165

Query: 168 IDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW 199
           IDTGAMFIEFVSFFIFVCTVLC HRVSLEDDW
Sbjct: 166 IDTGAMFIEFVSFFIFVCTVLCLHRVSLEDDW 197

[Close]

BLAST of Cp4.1LG10g03950 vs. NCBI nr
Match: XP_022979005.1 (vacuolar protein sorting-associated protein 55 homolog isoform X1 [Cucurbita maxima] >XP_022979007.1 vacuolar protein sorting-associated protein 55 homolog isoform X1 [Cucurbita maxima])

HSP 1 Score: 290 bits (743), Expect = 3.72e-97
Identity = 143/152 (94.08%), Postives = 148/152 (97.37%), Query Frame = 0


Query: 48  RCICHLTLTNVFDLHWAVARAVRGTWMDLISAVLAGLAFMFSSSILLQILACALYNNWWP 107
           R ICHLTLTNV DLH AVARA+RGTWMDLISAVLAGLAFMFSSSILLQILACALYNNWWP
Sbjct: 52  RYICHLTLTNVLDLHRAVARAIRGTWMDLISAVLAGLAFMFSSSILLQILACALYNNWWP 111

Query: 108 LLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQM 167
           LLSALMY+L+PMPCLF GGGSTQFLISRDGGGWIGAAKFLTGASTVG+LAIPIILRHAQM
Sbjct: 112 LLSALMYMLIPMPCLFSGGGSTQFLISRDGGGWIGAAKFLTGASTVGNLAIPIILRHAQM 171

Query: 168 IDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW 199
           IDTGAMFIEFVSFFIFVCTVLCFHRVS+EDDW
Sbjct: 172 IDTGAMFIEFVSFFIFVCTVLCFHRVSIEDDW 203

[Close]

BLAST of Cp4.1LG10g03950 vs. NCBI nr
Match: XP_022972744.1 (vacuolar protein sorting-associated protein 55 homolog isoform X1 [Cucurbita maxima])

HSP 1 Score: 275 bits (703), Expect = 1.64e-91
Identity = 139/149 (93.29%), Postives = 140/149 (93.96%), Query Frame = 0


Query: 52  HLTLTNVFDLHWAVARAVRGTWMDLI-SAVLAGLAFMFSSSILLQILACALYNNWWPLLS 111
           +L LTNV DL W V R VRGTWMDLI SAVLAGLAFMFSSSILLQILACALYNNWWPLLS
Sbjct: 25  NLMLTNVLDLPWVVPRGVRGTWMDLIISAVLAGLAFMFSSSILLQILACALYNNWWPLLS 84

Query: 112 ALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDT 171
           ALMYVLVPMPCLFFGGGSTQFL SRDGGGWIGAAKFLTGASTVGSLAIPIILRHA MIDT
Sbjct: 85  ALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDT 144

Query: 172 GAMFIEFVSFFIFVCTVLCFHRVSLEDDW 199
           GAMFIEFVSFFIFVCTVLCFHRVSLEDDW
Sbjct: 145 GAMFIEFVSFFIFVCTVLCFHRVSLEDDW 173

[Close]

BLAST of Cp4.1LG10g03950 vs. NCBI nr
Match: KAG6595172.1 (Vacuolar protein sorting-associated protein 55-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 273 bits (697), Expect = 1.34e-90
Identity = 138/149 (92.62%), Postives = 140/149 (93.96%), Query Frame = 0


Query: 52  HLTLTNVFDLHWAVARAVRGTWMDLI-SAVLAGLAFMFSSSILLQILACALYNNWWPLLS 111
           +L LTNV DL W V R VRGTWM+LI SAVLAGLAFMFSSSILLQILACALYNNWWPLLS
Sbjct: 25  NLMLTNVLDLPWLVPRGVRGTWMNLIISAVLAGLAFMFSSSILLQILACALYNNWWPLLS 84

Query: 112 ALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDT 171
           ALMYVLVPMPCLFFGGGSTQFL SRDGGGWIGAAKFLTGASTVGSLAIPIILRHA MIDT
Sbjct: 85  ALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDT 144

Query: 172 GAMFIEFVSFFIFVCTVLCFHRVSLEDDW 199
           GAMFIEFVSFFIFVCTVLCFHRVSLEDDW
Sbjct: 145 GAMFIEFVSFFIFVCTVLCFHRVSLEDDW 173

[Close]

BLAST of Cp4.1LG10g03950 vs. ExPASy TrEMBL
Match: A0A6J1EE43 (vacuolar protein sorting-associated protein 55 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111433349 PE=3 SV=1)

HSP 1 Score: 293 bits (751), Expect = 8.87e-99
Identity = 147/152 (96.71%), Postives = 147/152 (96.71%), Query Frame = 0


Query: 48  RCICHLTLTNVFDLHWAVARAVRGTWMDLISAVLAGLAFMFSSSILLQILACALYNNWWP 107
           R ICHLTLTNV DLH  VARAVRGTWMDLISAVLAGLAFMFSSSILLQILACALYNNWWP
Sbjct: 46  RYICHLTLTNVLDLHRVVARAVRGTWMDLISAVLAGLAFMFSSSILLQILACALYNNWWP 105

Query: 108 LLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQM 167
           LLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQM
Sbjct: 106 LLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQM 165

Query: 168 IDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW 199
           IDTGAMFIEFVSFFIFVCTVLC HRVSLEDDW
Sbjct: 166 IDTGAMFIEFVSFFIFVCTVLCLHRVSLEDDW 197

[Close]

BLAST of Cp4.1LG10g03950 vs. ExPASy TrEMBL
Match: A0A6J1IRY1 (vacuolar protein sorting-associated protein 55 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111478782 PE=3 SV=1)

HSP 1 Score: 290 bits (743), Expect = 1.80e-97
Identity = 143/152 (94.08%), Postives = 148/152 (97.37%), Query Frame = 0


Query: 48  RCICHLTLTNVFDLHWAVARAVRGTWMDLISAVLAGLAFMFSSSILLQILACALYNNWWP 107
           R ICHLTLTNV DLH AVARA+RGTWMDLISAVLAGLAFMFSSSILLQILACALYNNWWP
Sbjct: 52  RYICHLTLTNVLDLHRAVARAIRGTWMDLISAVLAGLAFMFSSSILLQILACALYNNWWP 111

Query: 108 LLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQM 167
           LLSALMY+L+PMPCLF GGGSTQFLISRDGGGWIGAAKFLTGASTVG+LAIPIILRHAQM
Sbjct: 112 LLSALMYMLIPMPCLFSGGGSTQFLISRDGGGWIGAAKFLTGASTVGNLAIPIILRHAQM 171

Query: 168 IDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW 199
           IDTGAMFIEFVSFFIFVCTVLCFHRVS+EDDW
Sbjct: 172 IDTGAMFIEFVSFFIFVCTVLCFHRVSIEDDW 203

[Close]

BLAST of Cp4.1LG10g03950 vs. ExPASy TrEMBL
Match: A0A6J1ICF8 (vacuolar protein sorting-associated protein 55 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111471259 PE=3 SV=1)

HSP 1 Score: 275 bits (703), Expect = 7.93e-92
Identity = 139/149 (93.29%), Postives = 140/149 (93.96%), Query Frame = 0


Query: 52  HLTLTNVFDLHWAVARAVRGTWMDLI-SAVLAGLAFMFSSSILLQILACALYNNWWPLLS 111
           +L LTNV DL W V R VRGTWMDLI SAVLAGLAFMFSSSILLQILACALYNNWWPLLS
Sbjct: 25  NLMLTNVLDLPWVVPRGVRGTWMDLIISAVLAGLAFMFSSSILLQILACALYNNWWPLLS 84

Query: 112 ALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDT 171
           ALMYVLVPMPCLFFGGGSTQFL SRDGGGWIGAAKFLTGASTVGSLAIPIILRHA MIDT
Sbjct: 85  ALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDT 144

Query: 172 GAMFIEFVSFFIFVCTVLCFHRVSLEDDW 199
           GAMFIEFVSFFIFVCTVLCFHRVSLEDDW
Sbjct: 145 GAMFIEFVSFFIFVCTVLCFHRVSLEDDW 173

[Close]

BLAST of Cp4.1LG10g03950 vs. ExPASy TrEMBL
Match: A0A6J1HFY6 (vacuolar protein sorting-associated protein 55 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111463596 PE=3 SV=1)

HSP 1 Score: 271 bits (693), Expect = 1.09e-90
Identity = 137/146 (93.84%), Postives = 138/146 (94.52%), Query Frame = 0


Query: 55  LTNVFDLHWAVARAVRGTWMDLI-SAVLAGLAFMFSSSILLQILACALYNNWWPLLSALM 114
           LTNV DL W V R VRGTWM+LI SAVLAGLAFMFSSSILLQILACALYNNWWPLLSALM
Sbjct: 2   LTNVLDLPWLVPRGVRGTWMNLIISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALM 61

Query: 115 YVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAM 174
           YVLVPMPCLFFGGGSTQFL SRDGGGWIGAAKFLTGASTVGSLAIPIILRHA MIDTGAM
Sbjct: 62  YVLVPMPCLFFGGGSTQFLTSRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAM 121

Query: 175 FIEFVSFFIFVCTVLCFHRVSLEDDW 199
           FIEFVSFFIFVCTVLCFHRVSLEDDW
Sbjct: 122 FIEFVSFFIFVCTVLCFHRVSLEDDW 147

[Close]

BLAST of Cp4.1LG10g03950 vs. ExPASy TrEMBL
Match: A0A0A0KHI6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G453780 PE=3 SV=1)

HSP 1 Score: 247 bits (631), Expect = 1.49e-81
Identity = 124/126 (98.41%), Postives = 124/126 (98.41%), Query Frame = 0


Query: 74  MDLISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLI 133
           MDLI AVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLI
Sbjct: 1   MDLIFAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLI 60

Query: 134 SRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCTVLCFHRV 193
           SRDGGGWIGAAKFLTGASTVGSLAIPIILRHA MIDTGAMFIEFVSFFIFVCTVLCFHRV
Sbjct: 61  SRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRV 120

Query: 194 SLEDDW 199
           SLEDDW
Sbjct: 121 SLEDDW 126

[Close]

BLAST of Cp4.1LG10g03950 vs. TAIR 10
Match: AT3G11530.1 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 211.5 bits (537), Expect = 6.4e-55
Identity = 100/113 (88.50%), Postives = 108/113 (95.58%), Query Frame = 0


Query: 87  MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKF 146
           MFSSSILLQILACA+Y NWWP+LSALMYV+VPMPC+FFGGGSTQFLISRDGGGWI AAKF
Sbjct: 1   MFSSSILLQILACAIYGNWWPMLSALMYVVVPMPCMFFGGGSTQFLISRDGGGWIDAAKF 60

Query: 147 LTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW 200
           LTGASTVGSLAIPIILRHAQMI+TGAM IEF SFFIF+CTV+CFHR SL+DDW
Sbjct: 61  LTGASTVGSLAIPIILRHAQMIETGAMLIEFTSFFIFICTVMCFHRASLDDDW 113

[Close]

BLAST of Cp4.1LG10g03950 vs. TAIR 10
Match: AT3G11530.2 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 211.5 bits (537), Expect = 6.4e-55
Identity = 100/113 (88.50%), Postives = 108/113 (95.58%), Query Frame = 0


Query: 87  MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKF 146
           MFSSSILLQILACA+Y NWWP+LSALMYV+VPMPC+FFGGGSTQFLISRDGGGWI AAKF
Sbjct: 1   MFSSSILLQILACAIYGNWWPMLSALMYVVVPMPCMFFGGGSTQFLISRDGGGWIDAAKF 60

Query: 147 LTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW 200
           LTGASTVGSLAIPIILRHAQMI+TGAM IEF SFFIF+CTV+CFHR SL+DDW
Sbjct: 61  LTGASTVGSLAIPIILRHAQMIETGAMLIEFTSFFIFICTVMCFHRASLDDDW 113

[Close]

BLAST of Cp4.1LG10g03950 vs. TAIR 10
Match: AT1G32410.1 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 122.5 bits (306), Expect = 3.9e-28
Identity = 60/108 (55.56%), Postives = 80/108 (74.07%), Query Frame = 0


Query: 81  LAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGW 140
           +A LA + S+ I+LQILACAL+NNWWP+LS +MYVL+PMP LFFGG  +  L +     W
Sbjct: 17  IAFLAILVSTGIVLQILACALFNNWWPMLSVIMYVLLPMPLLFFGGSDSTSLFNESDNSW 76

Query: 141 IGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCTVL 189
           I AAKFLTGAS VGS+AIP IL+HA +I  GA+ ++  S+ +F+  +L
Sbjct: 77  INAAKFLTGASAVGSVAIPSILKHAGLIGWGALALDLSSYVVFLVAIL 124

[Close]

BLAST of Cp4.1LG10g03950 vs. TAIR 10
Match: AT1G32410.2 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 122.5 bits (306), Expect = 3.9e-28
Identity = 60/108 (55.56%), Postives = 80/108 (74.07%), Query Frame = 0


Query: 81  LAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGW 140
           +A LA + S+ I+LQILACAL+NNWWP+LS +MYVL+PMP LFFGG  +  L +     W
Sbjct: 17  IAFLAILVSTGIVLQILACALFNNWWPMLSVIMYVLLPMPLLFFGGSDSTSLFNESDNSW 76

Query: 141 IGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCTVL 189
           I AAKFLTGAS VGS+AIP IL+HA +I  GA+ ++  S+ +F+  +L
Sbjct: 77  INAAKFLTGASAVGSVAIPSILKHAGLIGWGALALDLSSYVVFLVAIL 124

[Close]

BLAST of Cp4.1LG10g03950 vs. TAIR 10
Match: AT1G32410.3 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 122.5 bits (306), Expect = 3.9e-28
Identity = 60/108 (55.56%), Postives = 80/108 (74.07%), Query Frame = 0


Query: 81  LAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGW 140
           +A LA + S+ I+LQILACAL+NNWWP+LS +MYVL+PMP LFFGG  +  L +     W
Sbjct: 17  IAFLAILVSTGIVLQILACALFNNWWPMLSVIMYVLLPMPLLFFGGSDSTSLFNESDNSW 76

Query: 141 IGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCTVL 189
           I AAKFLTGAS VGS+AIP IL+HA +I  GA+ ++  S+ +F+  +L
Sbjct: 77  INAAKFLTGASAVGSVAIPSILKHAGLIGWGALALDLSSYVVFLVAIL 124

The following BLAST results are available for this feature:

BLAST of Cp4.1LG10g03950 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9AST6	5.5e-27	55.56	Vacuolar protein sorting-associated protein 55 homolog OS=Arabidopsis thaliana O...	[more]
P47111	7.7e-05	27.43	Vacuolar protein sorting-associated protein 55 OS=Saccharomyces cerevisiae (stra...	[more]
Q9UUH1	1.3e-04	25.21	Vacuolar protein sorting-associated protein 55 OS=Schizosaccharomyces pombe (str...	[more]

BLAST of Cp4.1LG10g03950 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6604338.1	2.75e-99	97.37	Vacuolar protein sorting-associated protein 55-like protein, partial [Cucurbita ...	[more]
XP_022926166.1	1.83e-98	96.71	vacuolar protein sorting-associated protein 55 homolog isoform X1 [Cucurbita mos...	[more]
XP_022979005.1	3.72e-97	94.08	vacuolar protein sorting-associated protein 55 homolog isoform X1 [Cucurbita max...	[more]
XP_022972744.1	1.64e-91	93.29	vacuolar protein sorting-associated protein 55 homolog isoform X1 [Cucurbita max...	[more]
KAG6595172.1	1.34e-90	92.62	Vacuolar protein sorting-associated protein 55-like protein, partial [Cucurbita ...	[more]

BLAST of Cp4.1LG10g03950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EE43	8.87e-99	96.71	vacuolar protein sorting-associated protein 55 homolog isoform X1 OS=Cucurbita m...	[more]
A0A6J1IRY1	1.80e-97	94.08	vacuolar protein sorting-associated protein 55 homolog isoform X1 OS=Cucurbita m...	[more]
A0A6J1ICF8	7.93e-92	93.29	vacuolar protein sorting-associated protein 55 homolog isoform X1 OS=Cucurbita m...	[more]
A0A6J1HFY6	1.09e-90	93.84	vacuolar protein sorting-associated protein 55 homolog isoform X1 OS=Cucurbita m...	[more]
A0A0A0KHI6	1.49e-81	98.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G453780 PE=3 SV=1	[more]

BLAST of Cp4.1LG10g03950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G11530.1	6.4e-55	88.50	Vacuolar protein sorting 55 (VPS55) family protein	[more]
AT3G11530.2	6.4e-55	88.50	Vacuolar protein sorting 55 (VPS55) family protein	[more]
AT1G32410.1	3.9e-28	55.56	Vacuolar protein sorting 55 (VPS55) family protein	[more]
AT1G32410.2	3.9e-28	55.56	Vacuolar protein sorting 55 (VPS55) family protein	[more]
AT1G32410.3	3.9e-28	55.56	Vacuolar protein sorting 55 (VPS55) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007262	Vps55/LEPROT	PFAM	PF04133	Vps55	coord: 82..194 e-value: 4.5E-30 score: 104.0
IPR007262	Vps55/LEPROT	PANTHER	PTHR12050	LEPTIN RECEPTOR-RELATED	coord: 81..198
None	No IPR available	PANTHER	PTHR12050:SF0	RH04491P	coord: 81..198

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG10g03950.1	Cp4.1LG10g03950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane