Cp4.1LG10g03740 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG10g03740
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionMuDRA-like transposase
LocationCp4.1LG10: 1866040 .. 1866387 (-)
RNA-Seq ExpressionCp4.1LG10g03740
SyntenyCp4.1LG10g03740
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATTGGATTTTTAGTGAGTGGTCTTGAATTCAATGGTGACGAACTAAAAGGAATCATCGTCGATGAGAAGATTACGTATATCGATCTTTTGGACAAAGTCTATGTCGAGTTTTTCATTGGTGAGAATCTTGTAGACGACCGTGGCCGGAGAACACCCTTGTGCATCACTATCAAACGTCGAGAATCACTAAATCAAGGGGAGGAGGTATGTTATCCGGTCCCGTTCGATTCTGGATGTGTAAGTAATCGAACTTCTGGTTTTGTTCCTACTGCACAAAAGTCTGAAATTCCTCCCTTTCTTGCTCTCTTACTGAAATTGAAGAACAAAACACAACTGCCATAA

mRNA sequence

ATGGCGATTGGATTTTTAGTGAGTGGTCTTGAATTCAATGGTGACGAACTAAAAGGAATCATCGTCGATGAGAAGATTACGTATATCGATCTTTTGGACAAAGTCTATGTCGAGTTTTTCATTGGTGAGAATCTTGTAGACGACCGTGGCCGGAGAACACCCTTGTGCATCACTATCAAACGTCGAGAATCACTAAATCAAGGGGAGGAGGTATGTTATCCGGTCCCGTTCGATTCTGGATGTGTAAGTAATCGAACTTCTGGTTTTGTTCCTACTGCACAAAAGTCTGAAATTCCTCCCTTTCTTGCTCTCTTACTGAAATTGAAGAACAAAACACAACTGCCATAA

Coding sequence (CDS)

ATGGCGATTGGATTTTTAGTGAGTGGTCTTGAATTCAATGGTGACGAACTAAAAGGAATCATCGTCGATGAGAAGATTACGTATATCGATCTTTTGGACAAAGTCTATGTCGAGTTTTTCATTGGTGAGAATCTTGTAGACGACCGTGGCCGGAGAACACCCTTGTGCATCACTATCAAACGTCGAGAATCACTAAATCAAGGGGAGGAGGTATGTTATCCGGTCCCGTTCGATTCTGGATGTGTAAGTAATCGAACTTCTGGTTTTGTTCCTACTGCACAAAAGTCTGAAATTCCTCCCTTTCTTGCTCTCTTACTGAAATTGAAGAACAAAACACAACTGCCATAA

Protein sequence

MAIGFLVSGLEFNGDELKGIIVDEKITYIDLLDKVYVEFFIGENLVDDRGRRTPLCITIKRRESLNQGEEVCYPVPFDSGCVSNRTSGFVPTAQKSEIPPFLALLLKLKNKTQLP
Homology
[Close]
BLAST of Cp4.1LG10g03740 vs. NCBI nr
Match: XP_022963183.1 (uncharacterized protein LOC111463467 [Cucurbita moschata])

HSP 1 Score: 155 bits (392), Expect = 1.38e-42
Identity = 82/134 (61.19%), Postives = 90/134 (67.16%), Query Frame = 0 

Query: 5   FLVSGLEFNGDELKGIIVDEKITYIDLLDKVY---------------------------- 64
           F  +G EFNGD+LKGI+VDEKITY DLLD+VY                            
Sbjct: 16  FSENGFEFNGDKLKGIVVDEKITYTDLLDRVYDIVKVDRAEFVATMKCLYKAHVPTPPTE 75

Query: 65  ------VEFFIGENLVDDRGRRTPLCITIKRRESLNQGEEVCYPVPFDSGCVSNRTSGFV 104
                 V+FFIGENLVDD GRRTPLCITIKRRESLNQG+EV YP PFDSG VSN+TSGFV
Sbjct: 76  ILDNEDVDFFIGENLVDDHGRRTPLCITIKRRESLNQGKEVHYPAPFDSGSVSNQTSGFV 135

[Close]
BLAST of Cp4.1LG10g03740 vs. NCBI nr
Match: KAG7027161.1 (hypothetical protein SDJN02_11172, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 155 bits (392), Expect = 1.38e-42
Identity = 82/134 (61.19%), Postives = 90/134 (67.16%), Query Frame = 0 

Query: 5   FLVSGLEFNGDELKGIIVDEKITYIDLLDKVY---------------------------- 64
           F  +G EFNGD+LKGI+VDEKITY DLLD+VY                            
Sbjct: 16  FSENGFEFNGDKLKGIVVDEKITYTDLLDRVYDIVKVDRAEFVATMKCLYKAHVPTPPTE 75

Query: 65  ------VEFFIGENLVDDRGRRTPLCITIKRRESLNQGEEVCYPVPFDSGCVSNRTSGFV 104
                 V+FFIGENLVDD GRRTPLCITIKRRESLNQG+EV YP PFDSG VSN+TSGFV
Sbjct: 76  ILDNEDVDFFIGENLVDDHGRRTPLCITIKRRESLNQGKEVHYPAPFDSGSVSNQTSGFV 135

[Close]
BLAST of Cp4.1LG10g03740 vs. NCBI nr
Match: XP_023517709.1 (uncharacterized protein LOC111781383 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 155 bits (392), Expect = 1.38e-42
Identity = 82/134 (61.19%), Postives = 90/134 (67.16%), Query Frame = 0 

Query: 5   FLVSGLEFNGDELKGIIVDEKITYIDLLDKVY---------------------------- 64
           F  +G EFNGD+LKGI+VDEKITY DLLD+VY                            
Sbjct: 16  FSENGFEFNGDKLKGIVVDEKITYTDLLDRVYDIVKVDRAEFVATMKCLYKAHVPTPPTE 75

Query: 65  ------VEFFIGENLVDDRGRRTPLCITIKRRESLNQGEEVCYPVPFDSGCVSNRTSGFV 104
                 V+FFIGENLVDD GRRTPLCITIKRRESLNQG+EV YP PFDSG VSN+TSGFV
Sbjct: 76  ILDNEDVDFFIGENLVDDHGRRTPLCITIKRRESLNQGKEVHYPAPFDSGSVSNQTSGFV 135

[Close]
BLAST of Cp4.1LG10g03740 vs. NCBI nr
Match: KAG6595146.1 (hypothetical protein SDJN03_11699, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 155 bits (392), Expect = 2.68e-42
Identity = 82/134 (61.19%), Postives = 90/134 (67.16%), Query Frame = 0 

Query: 5   FLVSGLEFNGDELKGIIVDEKITYIDLLDKVY---------------------------- 64
           F  +G EFNGD+LKGI+VDEKITY DLLD+VY                            
Sbjct: 57  FSENGFEFNGDKLKGIVVDEKITYTDLLDRVYDIVKVDRAEFVATMKCLYKAHVPTPPTE 116

Query: 65  ------VEFFIGENLVDDRGRRTPLCITIKRRESLNQGEEVCYPVPFDSGCVSNRTSGFV 104
                 V+FFIGENLVDD GRRTPLCITIKRRESLNQG+EV YP PFDSG VSN+TSGFV
Sbjct: 117 ILDNEDVDFFIGENLVDDHGRRTPLCITIKRRESLNQGKEVHYPAPFDSGSVSNQTSGFV 176

[Close]
BLAST of Cp4.1LG10g03740 vs. NCBI nr
Match: XP_038881084.1 (uncharacterized protein LOC120072701 isoform X2 [Benincasa hispida])

HSP 1 Score: 154 bits (389), Expect = 3.87e-42
Identity = 83/134 (61.94%), Postives = 89/134 (66.42%), Query Frame = 0 

Query: 5   FLVSGLEFNGDELKGIIVDEKITYIDLLDKVY---------------------------- 64
           F  +G EFNGD+LKGI+VDEKITY DLLDKVY                            
Sbjct: 16  FSENGFEFNGDKLKGIVVDEKITYNDLLDKVYDIVKVDPAEFVATMKCLYKAHVPTPPTE 75

Query: 65  ------VEFFIGENLVDDRGRRTPLCITIKRRESLNQGEEVCYPVPFDSGCVSNRTSGFV 104
                 VEFFIGENLVDD GRRTPLCITIKRRESLNQ +EV YPVPFDSG VSN+TSGF 
Sbjct: 76  ILDNEDVEFFIGENLVDDHGRRTPLCITIKRRESLNQEKEVHYPVPFDSGSVSNQTSGFA 135

[Close]
BLAST of Cp4.1LG10g03740 vs. ExPASy TrEMBL
Match: A0A6J1HH03 (uncharacterized protein LOC111463467 OS=Cucurbita moschata OX=3662 GN=LOC111463467 PE=4 SV=1)

HSP 1 Score: 155 bits (392), Expect = 6.70e-43
Identity = 82/134 (61.19%), Postives = 90/134 (67.16%), Query Frame = 0 

Query: 5   FLVSGLEFNGDELKGIIVDEKITYIDLLDKVY---------------------------- 64
           F  +G EFNGD+LKGI+VDEKITY DLLD+VY                            
Sbjct: 16  FSENGFEFNGDKLKGIVVDEKITYTDLLDRVYDIVKVDRAEFVATMKCLYKAHVPTPPTE 75

Query: 65  ------VEFFIGENLVDDRGRRTPLCITIKRRESLNQGEEVCYPVPFDSGCVSNRTSGFV 104
                 V+FFIGENLVDD GRRTPLCITIKRRESLNQG+EV YP PFDSG VSN+TSGFV
Sbjct: 76  ILDNEDVDFFIGENLVDDHGRRTPLCITIKRRESLNQGKEVHYPAPFDSGSVSNQTSGFV 135

[Close]
BLAST of Cp4.1LG10g03740 vs. ExPASy TrEMBL
Match: A0A1S3CHG4 (uncharacterized protein LOC103500950 OS=Cucumis melo OX=3656 GN=LOC103500950 PE=4 SV=1)

HSP 1 Score: 153 bits (386), Expect = 5.16e-42
Identity = 82/134 (61.19%), Postives = 90/134 (67.16%), Query Frame = 0 

Query: 5   FLVSGLEFNGDELKGIIVDEKITYIDLLDKVY---------------------------- 64
           F  +G EFNGD+LKGIIVDEKIT+ DLLDKVY                            
Sbjct: 16  FSENGFEFNGDKLKGIIVDEKITHSDLLDKVYEIVKVDPAEYVATMKCLYKAHVPTPPTE 75

Query: 65  ------VEFFIGENLVDDRGRRTPLCITIKRRESLNQGEEVCYPVPFDSGCVSNRTSGFV 104
                 V+FFIGENLVDD GRRTPLCIT+KRRESLNQ +EV YPVPFDSG VSN+TSGFV
Sbjct: 76  ILDNEDVDFFIGENLVDDHGRRTPLCITVKRRESLNQEKEVHYPVPFDSGSVSNQTSGFV 135

[Close]
BLAST of Cp4.1LG10g03740 vs. ExPASy TrEMBL
Match: A0A5A7SKK2 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G001940 PE=4 SV=1)

HSP 1 Score: 153 bits (386), Expect = 8.33e-42
Identity = 82/134 (61.19%), Postives = 90/134 (67.16%), Query Frame = 0 

Query: 5   FLVSGLEFNGDELKGIIVDEKITYIDLLDKVY---------------------------- 64
           F  +G EFNGD+LKGIIVDEKIT+ DLLDKVY                            
Sbjct: 46  FSENGFEFNGDKLKGIIVDEKITHSDLLDKVYEIVKVDPAEYVATMKCLYKAHVPTPPTE 105

Query: 65  ------VEFFIGENLVDDRGRRTPLCITIKRRESLNQGEEVCYPVPFDSGCVSNRTSGFV 104
                 V+FFIGENLVDD GRRTPLCIT+KRRESLNQ +EV YPVPFDSG VSN+TSGFV
Sbjct: 106 ILDNEDVDFFIGENLVDDHGRRTPLCITVKRRESLNQEKEVHYPVPFDSGSVSNQTSGFV 165

[Close]
BLAST of Cp4.1LG10g03740 vs. ExPASy TrEMBL
Match: A0A6J1KSH7 (uncharacterized protein LOC111496862 OS=Cucurbita maxima OX=3661 GN=LOC111496862 PE=4 SV=1)

HSP 1 Score: 151 bits (382), Expect = 1.95e-41
Identity = 80/134 (59.70%), Postives = 89/134 (66.42%), Query Frame = 0 

Query: 5   FLVSGLEFNGDELKGIIVDEKITYIDLLDKVY---------------------------- 64
           F  +G EF+GD+LKGI+VDEKI Y DLLD+VY                            
Sbjct: 16  FSENGFEFSGDKLKGIVVDEKIAYTDLLDRVYDIVKVDRAEFVATMKCLYKAHVPTPPTE 75

Query: 65  ------VEFFIGENLVDDRGRRTPLCITIKRRESLNQGEEVCYPVPFDSGCVSNRTSGFV 104
                 V+FFIGENLVDD GRRTPLCITIKRRESLNQG+EV YP PFDSG VSN+TSGFV
Sbjct: 76  ILDNEDVDFFIGENLVDDHGRRTPLCITIKRRESLNQGKEVHYPAPFDSGSVSNQTSGFV 135

[Close]
BLAST of Cp4.1LG10g03740 vs. ExPASy TrEMBL
Match: A0A6J1BW69 (uncharacterized protein LOC111005278 OS=Momordica charantia OX=3673 GN=LOC111005278 PE=4 SV=1)

HSP 1 Score: 151 bits (381), Expect = 2.69e-41
Identity = 79/134 (58.96%), Postives = 89/134 (66.42%), Query Frame = 0 

Query: 5   FLVSGLEFNGDELKGIIVDEKITYIDLLDKVY---------------------------- 64
           F  +G EFNGD+LKGIIVDEKITY DLLD+VY                            
Sbjct: 16  FSENGFEFNGDKLKGIIVDEKITYSDLLDRVYDIVKVDPTEFVATLKCLYKAHVPTPPTE 75

Query: 65  ------VEFFIGENLVDDRGRRTPLCITIKRRESLNQGEEVCYPVPFDSGCVSNRTSGFV 104
                 V+FFIGENLVDD  RRTPLC+TIKRRESLN+G+EV YP PFDSG VSN+TSGFV
Sbjct: 76  ILDNEDVDFFIGENLVDDHSRRTPLCVTIKRRESLNEGKEVHYPAPFDSGSVSNQTSGFV 135

The following BLAST results are available for this feature:
BLAST of Cp4.1LG10g03740 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG10g03740 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022963183.11.38e-4261.19uncharacterized protein LOC111463467 [Cucurbita moschata][more]
KAG7027161.11.38e-4261.19hypothetical protein SDJN02_11172, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_023517709.11.38e-4261.19uncharacterized protein LOC111781383 [Cucurbita pepo subsp. pepo][more]
KAG6595146.12.68e-4261.19hypothetical protein SDJN03_11699, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_038881084.13.87e-4261.94uncharacterized protein LOC120072701 isoform X2 [Benincasa hispida][more]
BLAST of Cp4.1LG10g03740 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HH036.70e-4361.19uncharacterized protein LOC111463467 OS=Cucurbita moschata OX=3662 GN=LOC1114634... [more]
A0A1S3CHG45.16e-4261.19uncharacterized protein LOC103500950 OS=Cucumis melo OX=3656 GN=LOC103500950 PE=... [more]
A0A5A7SKK28.33e-4261.19MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2... [more]
A0A6J1KSH71.95e-4159.70uncharacterized protein LOC111496862 OS=Cucurbita maxima OX=3661 GN=LOC111496862... [more]
A0A6J1BW692.69e-4158.96uncharacterized protein LOC111005278 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
BLAST of Cp4.1LG10g03740 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g03740.1Cp4.1LG10g03740.1mRNA