Cp4.1LG10g03060 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG10g03060
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionHeat shock protein 40
LocationCp4.1LG10: 2233922 .. 2234185 (-)
RNA-Seq ExpressionCp4.1LG10g03060
SyntenyCp4.1LG10g03060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAACAACAGCGACGACACGCTGATCAATTCTCAAAAAAGAATTCCGATCGTCGTTAATCCTGGTGAAACAGGTAACAAGTTCACGACGTGGTCGCCATTGATGGATCATATAGTGCAAATTTCTTCTTCGAACAAGTCATTGGCTGATAATGTCGACGAAATCGATTCGAAAATCGATCGCGTTCTTTATTCTTCGAAGAATTTTAGGAGATTACCAATTTTTGAAGAGATGTGTCCGTCTTCCTCTGCGTCTTCGTGA

mRNA sequence

ATGGAGAACAACAGCGACGACACGCTGATCAATTCTCAAAAAAGAATTCCGATCGTCGTTAATCCTGGTGAAACAGGTAACAAGTTCACGACGTGGTCGCCATTGATGGATCATATAGTGCAAATTTCTTCTTCGAACAAGTCATTGGCTGATAATGTCGACGAAATCGATTCGAAAATCGATCGCGTTCTTTATTCTTCGAAGAATTTTAGGAGATTACCAATTTTTGAAGAGATGTGTCCGTCTTCCTCTGCGTCTTCGTGA

Coding sequence (CDS)

ATGGAGAACAACAGCGACGACACGCTGATCAATTCTCAAAAAAGAATTCCGATCGTCGTTAATCCTGGTGAAACAGGTAACAAGTTCACGACGTGGTCGCCATTGATGGATCATATAGTGCAAATTTCTTCTTCGAACAAGTCATTGGCTGATAATGTCGACGAAATCGATTCGAAAATCGATCGCGTTCTTTATTCTTCGAAGAATTTTAGGAGATTACCAATTTTTGAAGAGATGTGTCCGTCTTCCTCTGCGTCTTCGTGA

Protein sequence

MENNSDDTLINSQKRIPIVVNPGETGNKFTTWSPLMDHIVQISSSNKSLADNVDEIDSKIDRVLYSSKNFRRLPIFEEMCPSSSASS
Homology
BLAST of Cp4.1LG10g03060 vs. NCBI nr
Match: KAG6604244.1 (hypothetical protein SDJN03_04853, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 164 bits (416), Expect = 6.12e-51
Identity = 83/87 (95.40%), Postives = 83/87 (95.40%), Query Frame = 0

Query: 1  MENNSDDTLINSQKRIPIVVNPGETGNKFTTWSPLMDHIVQISSSNKSLADNVDEIDSKI 60
          MENN DDTLINSQKRIPIVVNPGET  KFT WSPLMDHIVQISSSNKSLADNVDEIDSKI
Sbjct: 1  MENNGDDTLINSQKRIPIVVNPGETSTKFTMWSPLMDHIVQISSSNKSLADNVDEIDSKI 60

Query: 61 DRVLYSSKNFRRLPIFEEMCPSSSASS 87
          DRVLYSSKNFRRLPIFEEMCPSSSASS
Sbjct: 61 DRVLYSSKNFRRLPIFEEMCPSSSASS 87

BLAST of Cp4.1LG10g03060 vs. NCBI nr
Match: TYK12969.1 (heat shock protein 40 [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 8.29e-16
Identity = 40/77 (51.95%), Postives = 53/77 (68.83%), Query Frame = 0

Query: 11 NSQKRIPIVVNPGETGNKFTT-WSPLMDHIVQISSSNKSLADNVDEIDSKIDRVLYSSKN 70
          N  K+ PIV+  GET  K T  WSP MD+IV++S    +L   +DE+DSKID +LYS + 
Sbjct: 6  NDDKKAPIVLRSGETRKKSTANWSPAMDNIVKLSRK-MTLGKALDELDSKIDAILYSPRK 65

Query: 71 FRRLPIFEEMCPSSSAS 86
           +RLPIFEE+CP  S+S
Sbjct: 66 TKRLPIFEEICPIHSSS 81

BLAST of Cp4.1LG10g03060 vs. NCBI nr
Match: KAE8647478.1 (hypothetical protein Csa_003673 [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 3.00e-15
Identity = 41/78 (52.56%), Postives = 56/78 (71.79%), Query Frame = 0

Query: 11 NSQKRIPIVVNPGETGNKFTT-WSPLMDHIVQISSSNKSLADNVDEIDSKIDRVLYSS-K 70
          N  K+ PIV+  GET  K T+ WSP MD+IV++S    SL + +DE+D+KID +LYSS +
Sbjct: 6  NDDKKTPIVLRSGETKKKSTSNWSPAMDNIVKLSPK-MSLGEALDELDAKIDAILYSSSR 65

Query: 71 NFRRLPIFEEMCPSSSAS 86
            +RLPIFEE+CP  S+S
Sbjct: 66 RTKRLPIFEEICPIHSSS 82

BLAST of Cp4.1LG10g03060 vs. NCBI nr
Match: EXB24797.1 (hypothetical protein L484_005176 [Morus notabilis])

HSP 1 Score: 47.8 bits (112), Expect = 1.98e-04
Identity = 27/71 (38.03%), Postives = 41/71 (57.75%), Query Frame = 0

Query: 12 SQKRIPIVVNPGETGNKFTTWSPLMDHIVQISSSNKSLADNVDEIDSKIDRVLYSSKNF- 71
          +Q+ I I++N     +  + WSPLMD    I    ++ A   ++ ++ ID VLY  K   
Sbjct: 24 NQENIKIIIN-----DTHSRWSPLMD---DIELFQQTTAKTTEDFEAFIDEVLYGPKRTT 83

Query: 72 RRLPIFEEMCP 81
          RRLP+FEE+CP
Sbjct: 84 RRLPVFEEICP 86

BLAST of Cp4.1LG10g03060 vs. ExPASy TrEMBL
Match: A0A5D3CRK5 (Heat shock protein 40 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G005660 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.01e-16
Identity = 40/77 (51.95%), Postives = 53/77 (68.83%), Query Frame = 0

Query: 11 NSQKRIPIVVNPGETGNKFTT-WSPLMDHIVQISSSNKSLADNVDEIDSKIDRVLYSSKN 70
          N  K+ PIV+  GET  K T  WSP MD+IV++S    +L   +DE+DSKID +LYS + 
Sbjct: 6  NDDKKAPIVLRSGETRKKSTANWSPAMDNIVKLSRK-MTLGKALDELDSKIDAILYSPRK 65

Query: 71 FRRLPIFEEMCPSSSAS 86
           +RLPIFEE+CP  S+S
Sbjct: 66 TKRLPIFEEICPIHSSS 81

BLAST of Cp4.1LG10g03060 vs. ExPASy TrEMBL
Match: A0A0A0KKZ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486980 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.18e-15
Identity = 41/78 (52.56%), Postives = 56/78 (71.79%), Query Frame = 0

Query: 11 NSQKRIPIVVNPGETGNKFTT-WSPLMDHIVQISSSNKSLADNVDEIDSKIDRVLYSS-K 70
          N  K+ PIV+  GET  K T+ WSP MD+IV++S    SL + +DE+D+KID +LYSS +
Sbjct: 6  NDDKKTPIVLRSGETKKKSTSNWSPAMDNIVKLSPK-MSLGEALDELDAKIDAILYSSSR 65

Query: 71 NFRRLPIFEEMCPSSSAS 86
            +RLPIFEE+CP  S+S
Sbjct: 66 RTKRLPIFEEICPIHSSS 82

BLAST of Cp4.1LG10g03060 vs. ExPASy TrEMBL
Match: W9QJ04 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_005176 PE=4 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 9.57e-05
Identity = 27/71 (38.03%), Postives = 41/71 (57.75%), Query Frame = 0

Query: 12 SQKRIPIVVNPGETGNKFTTWSPLMDHIVQISSSNKSLADNVDEIDSKIDRVLYSSKNF- 71
          +Q+ I I++N     +  + WSPLMD    I    ++ A   ++ ++ ID VLY  K   
Sbjct: 24 NQENIKIIIN-----DTHSRWSPLMD---DIELFQQTTAKTTEDFEAFIDEVLYGPKRTT 83

Query: 72 RRLPIFEEMCP 81
          RRLP+FEE+CP
Sbjct: 84 RRLPVFEEICP 86

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6604244.16.12e-5195.40hypothetical protein SDJN03_04853, partial [Cucurbita argyrosperma subsp. sorori... [more]
TYK12969.18.29e-1651.95heat shock protein 40 [Cucumis melo var. makuwa][more]
KAE8647478.13.00e-1552.56hypothetical protein Csa_003673 [Cucumis sativus][more]
EXB24797.11.98e-0438.03hypothetical protein L484_005176 [Morus notabilis][more]
Match NameE-valueIdentityDescription
A0A5D3CRK54.01e-1651.95Heat shock protein 40 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25... [more]
A0A0A0KKZ21.18e-1552.56Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486980 PE=4 SV=1[more]
W9QJ049.57e-0538.03Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_005176 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g03060.1Cp4.1LG10g03060.1mRNA