Cp4.1LG10g01140 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG10g01140
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionProstatic spermine-binding protein
LocationCp4.1LG10: 3279160 .. 3279357 (-)
RNA-Seq ExpressionCp4.1LG10g01140
SyntenyCp4.1LG10g01140
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGTCTCTTTGGAAGCTCTGGCAATGGCCGGGATGGACTCCGGCGACTGGGGCATAGATGTTGAGGAATGGGAAACCCAAGACTTGGACCGCTGCCCTCCCCCGTATCTCCTCGCCGAAGAACGAGATGACGATGAAACTTCAGAACAACCAGGTCGTTCTGAGCCACCGTCGCAGAGTCGCCGGCGATCATGA

mRNA sequence

ATGTCTGTCTCTTTGGAAGCTCTGGCAATGGCCGGGATGGACTCCGGCGACTGGGGCATAGATGTTGAGGAATGGGAAACCCAAGACTTGGACCGCTGCCCTCCCCCGTATCTCCTCGCCGAAGAACGAGATGACGATGAAACTTCAGAACAACCAGGTCGTTCTGAGCCACCGTCGCAGAGTCGCCGGCGATCATGA

Coding sequence (CDS)

ATGTCTGTCTCTTTGGAAGCTCTGGCAATGGCCGGGATGGACTCCGGCGACTGGGGCATAGATGTTGAGGAATGGGAAACCCAAGACTTGGACCGCTGCCCTCCCCCGTATCTCCTCGCCGAAGAACGAGATGACGATGAAACTTCAGAACAACCAGGTCGTTCTGAGCCACCGTCGCAGAGTCGCCGGCGATCATGA

Protein sequence

MSVSLEALAMAGMDSGDWGIDVEEWETQDLDRCPPPYLLAEERDDDETSEQPGRSEPPSQSRRRS
Homology
BLAST of Cp4.1LG10g01140 vs. NCBI nr
Match: KAG7034201.1 (Protein SENSITIVE TO PROTON RHIZOTOXICITY 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 125 bits (315), Expect = 1.79e-32
Identity = 62/65 (95.38%), Postives = 63/65 (96.92%), Query Frame = 0

Query: 1   MSVSLEALAMAGMDSGDWGIDVEEWETQDLDRCPPPYLLAEERDDDETSEQPGRSEPPSQ 60
           MSVSLEALAMAGMDSG+WGIDVEEWETQDLDRCPPPYLLAEERDDDE SEQP RSEPPSQ
Sbjct: 363 MSVSLEALAMAGMDSGEWGIDVEEWETQDLDRCPPPYLLAEERDDDEASEQPSRSEPPSQ 422

Query: 61  SRRRS 65
           SRRRS
Sbjct: 423 SRRRS 427

BLAST of Cp4.1LG10g01140 vs. NCBI nr
Match: KAG6604036.1 (Zinc finger protein STOP1-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 123 bits (308), Expect = 1.73e-31
Identity = 61/65 (93.85%), Postives = 62/65 (95.38%), Query Frame = 0

Query: 1   MSVSLEALAMAGMDSGDWGIDVEEWETQDLDRCPPPYLLAEERDDDETSEQPGRSEPPSQ 60
           MSVSLEALAMAGMDSG+WGIDVEEWETQDLDRCPPPYLLAEERDDDE SEQP  SEPPSQ
Sbjct: 358 MSVSLEALAMAGMDSGEWGIDVEEWETQDLDRCPPPYLLAEERDDDEASEQPSGSEPPSQ 417

Query: 61  SRRRS 65
           SRRRS
Sbjct: 418 SRRRS 422

BLAST of Cp4.1LG10g01140 vs. NCBI nr
Match: KGN48742.1 (hypothetical protein Csa_004391 [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 1.69e-19
Identity = 46/64 (71.88%), Postives = 53/64 (82.81%), Query Frame = 0

Query: 2  SVSLEALAMAGMD-SGDWGIDVEEWETQDLDRCPPPYLLAEER--DDDETSEQ--PGRSE 60
          SVSLEA AMAGM+ SG+WGIDVEEWE+QDLD CPPPYLLAE R  D+D+ S++  P  SE
Sbjct: 3  SVSLEAFAMAGMEYSGEWGIDVEEWESQDLDYCPPPYLLAEGRVNDNDKASDEQPPSLSE 62

BLAST of Cp4.1LG10g01140 vs. NCBI nr
Match: KAA0036308.1 (prostatic spermine-binding protein [Cucumis melo var. makuwa] >TYK12702.1 prostatic spermine-binding protein [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 8.48e-18
Identity = 45/67 (67.16%), Postives = 52/67 (77.61%), Query Frame = 0

Query: 2  SVSLEALAMAGMD-SGDWGIDVEEWETQDLDRCPPPYLLAEER-----DDDETSEQ--PG 60
          SVSLEA AMAGM+ SG+WGIDVE+WE+QDLD CPPPYLLAE R     + D+ S+Q  P 
Sbjct: 3  SVSLEAFAMAGMEYSGEWGIDVEKWESQDLDYCPPPYLLAEGRVNDNDNKDKASDQQRPS 62

BLAST of Cp4.1LG10g01140 vs. NCBI nr
Match: XP_022132368.1 (uncharacterized protein LOC111005244 [Momordica charantia])

HSP 1 Score: 76.6 bits (187), Expect = 3.01e-16
Identity = 34/46 (73.91%), Postives = 41/46 (89.13%), Query Frame = 0

Query: 1  MSVSLEALAMAGMDSGDWGIDVEEWETQDLDRCPPPYLLAEERDDD 46
          M+VSLEALAMAGMDSG+WG+D +EWETQD D+ PPPYLLAE  D++
Sbjct: 1  MTVSLEALAMAGMDSGNWGVDFDEWETQDSDQYPPPYLLAEGPDNE 46

BLAST of Cp4.1LG10g01140 vs. ExPASy TrEMBL
Match: A0A0A0KK23 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G499860 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 8.19e-20
Identity = 46/64 (71.88%), Postives = 53/64 (82.81%), Query Frame = 0

Query: 2  SVSLEALAMAGMD-SGDWGIDVEEWETQDLDRCPPPYLLAEER--DDDETSEQ--PGRSE 60
          SVSLEA AMAGM+ SG+WGIDVEEWE+QDLD CPPPYLLAE R  D+D+ S++  P  SE
Sbjct: 3  SVSLEAFAMAGMEYSGEWGIDVEEWESQDLDYCPPPYLLAEGRVNDNDKASDEQPPSLSE 62

BLAST of Cp4.1LG10g01140 vs. ExPASy TrEMBL
Match: A0A5D3CMY4 (Prostatic spermine-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002900 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.10e-18
Identity = 45/67 (67.16%), Postives = 52/67 (77.61%), Query Frame = 0

Query: 2  SVSLEALAMAGMD-SGDWGIDVEEWETQDLDRCPPPYLLAEER-----DDDETSEQ--PG 60
          SVSLEA AMAGM+ SG+WGIDVE+WE+QDLD CPPPYLLAE R     + D+ S+Q  P 
Sbjct: 3  SVSLEAFAMAGMEYSGEWGIDVEKWESQDLDYCPPPYLLAEGRVNDNDNKDKASDQQRPS 62

BLAST of Cp4.1LG10g01140 vs. ExPASy TrEMBL
Match: A0A6J1BW23 (uncharacterized protein LOC111005244 OS=Momordica charantia OX=3673 GN=LOC111005244 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.46e-16
Identity = 34/46 (73.91%), Postives = 41/46 (89.13%), Query Frame = 0

Query: 1  MSVSLEALAMAGMDSGDWGIDVEEWETQDLDRCPPPYLLAEERDDD 46
          M+VSLEALAMAGMDSG+WG+D +EWETQD D+ PPPYLLAE  D++
Sbjct: 1  MTVSLEALAMAGMDSGNWGVDFDEWETQDSDQYPPPYLLAEGPDNE 46

BLAST of Cp4.1LG10g01140 vs. ExPASy TrEMBL
Match: A0A1Q3CWR7 (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_28116 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.20e-13
Identity = 30/44 (68.18%), Postives = 37/44 (84.09%), Query Frame = 0

Query: 1  MSVSLEALAMAGMDSGDWGIDVEEWETQDLDRCPPPYLLAEERD 44
          MSVSLEALAMAG+D  +WG+D EEWE +DL+  PPP+LLAEE +
Sbjct: 1  MSVSLEALAMAGLDYNEWGLDTEEWERKDLETMPPPHLLAEEEE 44

BLAST of Cp4.1LG10g01140 vs. ExPASy TrEMBL
Match: A0A5D2LIB1 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D03G043100v1 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.92e-13
Identity = 28/46 (60.87%), Postives = 39/46 (84.78%), Query Frame = 0

Query: 1  MSVSLEALAMAGMDSGDWGIDVEEWETQDLDRCPPPYLLAEERDDD 46
          MSVS+EALAMAG+D  +WG+D+E+WE  D  +CPPP+LLAEE +++
Sbjct: 1  MSVSIEALAMAGVDYNEWGLDIEKWEDDDDSQCPPPHLLAEENEEE 46

BLAST of Cp4.1LG10g01140 vs. TAIR 10
Match: AT2G22320.1 (unknown protein; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.5 bits (101), Expect = 7.5e-05
Identity = 21/46 (45.65%), Postives = 32/46 (69.57%), Query Frame = 0

Query: 5  LEALAMAGMDSGDWGIDVEEWETQDLDRCPPPYLLAEERDDDETSE 51
          +EALAMAG+D  +WG+ +EEWE Q  +   P +LLA++  ++E  E
Sbjct: 1  MEALAMAGVDYQEWGLSIEEWELQ--ESVVPLHLLADDFKEEEQEE 44

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG7034201.11.79e-3295.38Protein SENSITIVE TO PROTON RHIZOTOXICITY 1, partial [Cucurbita argyrosperma sub... [more]
KAG6604036.11.73e-3193.85Zinc finger protein STOP1-like protein, partial [Cucurbita argyrosperma subsp. s... [more]
KGN48742.11.69e-1971.88hypothetical protein Csa_004391 [Cucumis sativus][more]
KAA0036308.18.48e-1867.16prostatic spermine-binding protein [Cucumis melo var. makuwa] >TYK12702.1 prosta... [more]
XP_022132368.13.01e-1673.91uncharacterized protein LOC111005244 [Momordica charantia][more]
Match NameE-valueIdentityDescription
A0A0A0KK238.19e-2071.88Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G499860 PE=4 SV=1[more]
A0A5D3CMY44.10e-1867.16Prostatic spermine-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
A0A6J1BW231.46e-1673.91uncharacterized protein LOC111005244 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
A0A1Q3CWR71.20e-1368.18Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_28116 PE=4... [more]
A0A5D2LIB11.92e-1360.87Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D03G043100v1 P... [more]
Match NameE-valueIdentityDescription
AT2G22320.17.5e-0545.65unknown protein; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacter... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..65
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 25..65

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g01140.1Cp4.1LG10g01140.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane