Cp4.1LG10g00380 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG10g00380
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	protein SHI RELATED SEQUENCE 1-like
Location	Cp4.1LG10: 3722467 .. 3724047 (-)
RNA-Seq Expression	Cp4.1LG10g00380
Synteny	Cp4.1LG10g00380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAAAAGAAAAAAAAAAGAAAAAAAAAAAGAAAAGGAAAATAGATCATATAACGGTTGTCACAGACAAGTGAGCGGGTTTTTCGCGAAAGGGGGAGGGATGGGGGCAAAAGCTGGTGGGGTGACACGTGGAGGTGGGAGAACCATTAGATGAGGGGAGAATTATAGATGGGTGTGATGAAGATGATCTGAGCACTTGAGAGTTGGGATCCATGGGGAAGGAGAGGAGGAGGAGGAGGAGAAGAGGAGGAGGAAGAAGAAGAGAGAAAGGGAGTTGGATGGGGACTTAAATTGGGTTATCAGAAAGAGAACAAAAAAAAAGAAAAGAAAACTGCGCAGAGGAGAGAGAAAGAAAGGTGGGGAAAGAGAAAGGCATGGCGGCGTTGCAGAGAGAGGTGTAATTCTGGGCCATAAATGTGGATGTATTAGTAACACTGAGAGAAGGAAGAGGCAAAATTGAAAAAAAAGGGGAATTCAAAGCGTGATTAACGCTGCCCCCACTATCACCCAGCAGCAGCAACAGCAGCAACAGCAGCAGCAGCCAGCAGCAGCCAGCAGCAGCAGCCACCAGGCACCAGCAGCTGCAGCAGTTTGGTAATTAACTACAACGCACACATCCTTCCCACCTCTCCTCAAAACCCCAATTCTAGACTCATTTCCTTTTCAATTTGTTTTTCGAAAAGATTATAATTCAAGCGCCTCCAATTCAGGCAGGGGGGGAGGAGGGGTTGGACCCTCTGATTATGGATTTTAGGTCACCCACGAATTCTGGGTCAGAGCAACAATGTCTGGCTTCTTCAGTTTAGGTGGAGGAGGAAGAGAAGACCACCAAGACCACCAAGACCATCAAGACCATCAAGACCACCAAGACCACCAACAAAACAACGACACAAACCCGGAGACCTTGTTTTGGTACAAGGGCAACGTGGAGCTATGGCAACAACAACACCACCACCACCAGCACCCTCAACAAGAACAGCCTCTCTTCCAAACCCAATCCCGGACTCCTTACTCCGCCGCTTTACCCGTTCGAACCTCCGATGAATCCTCCTCCAGATCGGGCAATTTCATGATGATTGGGTCAGGATCCGGAGGAGGAGGAATCAGCTGCCAAGACTGTGGCAACCAAGCTAAAAAAGACTGTGTCCATATGCGGTGCAGGACTTGCTGCAAGAGCCGAGGATTCCATTGCGAAACCCATGTGAAAAGCACTTGGGTCCCTGCCGCCAAGCGCCGCGAACGCCAAGAGAAACTCGCCGCCTTACAAACCCAGCATCAACTTCACCTTCATGGCGACAATAATCCCAAACGCCACAGAGATTATAACCCCACTTCCTCCTCTTCTCTCGCCTGCACTCTCATCCCCAACAACACTTCTGGTACAAATACAAATACAAATACAATCATCCCTTCCCCACCTTTATTTTTTTTTTCTTTATTTAATTATATAATTTTAGATTGCGTGCTGCAGATGTCAAAACTTCCTCTCGCTATAGTAAACCCCATCACCTTTTTTTTCTGTCTTCTTTACTTACTGTTATGCAGTATTCCTGACGAGTTCATCCTCTGTGTTTAATCCCTAA

mRNA sequence

TAAAAAGAAAAAAAAAAGAAAAAAAAAAAGAAAAGGAAAATAGATCATATAACGGTTGTCACAGACAAGTGAGCGGGTTTTTCGCGAAAGGGGGAGGGATGGGGGCAAAAGCTGGTGGGGTGACACGTGGAGGTGGGAGAACCATTAGATGAGGGGAGAATTATAGATGGGTGTGATGAAGATGATCTGAGCACTTGAGAGTTGGGATCCATGGGGAAGGAGAGGAGGAGGAGGAGGAGAAGAGGAGGAGGAAGAAGAAGAGAGAAAGGGAGTTGGATGGGGACTTAAATTGGGTTATCAGAAAGAGAACAAAAAAAAAGAAAAGAAAACTGCGCAGAGGAGAGAGAAAGAAAGGTGGGGAAAGAGAAAGGCATGGCGGCGTTGCAGAGAGAGGTGTAATTCTGGGCCATAAATGTGGATGTATTAGTAACACTGAGAGAAGGAAGAGGCAAAATTGAAAAAAAAGGGGAATTCAAAGCGTGATTAACGCTGCCCCCACTATCACCCAGCAGCAGCAACAGCAGCAACAGCAGCAGCAGCCAGCAGCAGCCAGCAGCAGCAGCCACCAGGCACCAGCAGCTGCAGCAGTTTGGCAGGGGGGGAGGAGGGGTTGGACCCTCTGATTATGGATTTTAGGTCACCCACGAATTCTGGGTCAGAGCAACAATGTCTGGCTTCTTCAGTTTAGGTGGAGGAGGAAGAGAAGACCACCAAGACCACCAAGACCATCAAGACCATCAAGACCACCAAGACCACCAACAAAACAACGACACAAACCCGGAGACCTTGTTTTGGTACAAGGGCAACGTGGAGCTATGGCAACAACAACACCACCACCACCAGCACCCTCAACAAGAACAGCCTCTCTTCCAAACCCAATCCCGGACTCCTTACTCCGCCGCTTTACCCGTTCGAACCTCCGATGAATCCTCCTCCAGATCGGGCAATTTCATGATGATTGGGTCAGGATCCGGAGGAGGAGGAATCAGCTGCCAAGACTGTGGCAACCAAGCTAAAAAAGACTGTGTCCATATGCGGTGCAGGACTTGCTGCAAGAGCCGAGGATTCCATTGCGAAACCCATGTGAAAAGCACTTGGGTCCCTGCCGCCAAGCGCCGCGAACGCCAAGAGAAACTCGCCGCCTTACAAACCCAGCATCAACTTCACCTTCATGGCGACAATAATCCCAAACGCCACAGAGATTATAACCCCACTTCCTCCTCTTCTCTCGCCTGCACTCTCATCCCCAACAACACTTCTGTATTCCTGACGAGTTCATCCTCTGTGTTTAATCCCTAA

Coding sequence (CDS)

ATGTCTGGCTTCTTCAGTTTAGGTGGAGGAGGAAGAGAAGACCACCAAGACCACCAAGACCATCAAGACCATCAAGACCACCAAGACCACCAACAAAACAACGACACAAACCCGGAGACCTTGTTTTGGTACAAGGGCAACGTGGAGCTATGGCAACAACAACACCACCACCACCAGCACCCTCAACAAGAACAGCCTCTCTTCCAAACCCAATCCCGGACTCCTTACTCCGCCGCTTTACCCGTTCGAACCTCCGATGAATCCTCCTCCAGATCGGGCAATTTCATGATGATTGGGTCAGGATCCGGAGGAGGAGGAATCAGCTGCCAAGACTGTGGCAACCAAGCTAAAAAAGACTGTGTCCATATGCGGTGCAGGACTTGCTGCAAGAGCCGAGGATTCCATTGCGAAACCCATGTGAAAAGCACTTGGGTCCCTGCCGCCAAGCGCCGCGAACGCCAAGAGAAACTCGCCGCCTTACAAACCCAGCATCAACTTCACCTTCATGGCGACAATAATCCCAAACGCCACAGAGATTATAACCCCACTTCCTCCTCTTCTCTCGCCTGCACTCTCATCCCCAACAACACTTCTGTATTCCTGACGAGTTCATCCTCTGTGTTTAATCCCTAA

Protein sequence

MSGFFSLGGGGREDHQDHQDHQDHQDHQDHQQNNDTNPETLFWYKGNVELWQQQHHHHQHPQQEQPLFQTQSRTPYSAALPVRTSDESSSRSGNFMMIGSGSGGGGISCQDCGNQAKKDCVHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQEKLAALQTQHQLHLHGDNNPKRHRDYNPTSSSSLACTLIPNNTSVFLTSSSSVFNP

Homology

[Close]

BLAST of Cp4.1LG10g00380 vs. ExPASy Swiss-Prot
Match: K4B6C9 (Protein EXPRESSION OF TERPENOIDS 1 OS=Solanum lycopersicum OX=4081 GN=EOT1 PE=2 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 3.9e-39
Identity = 108/225 (48.00%), Postives = 130/225 (57.78%), Query Frame = 0


Query: 1   MSGFFSLGGGGREDHQDHQDHQD-----------HQDHQDHQQNNDTNPETLFWYKGNVE 60
           M+ FFSLGG   + HQ+    Q            +++   H  +N   P T   YKG  E
Sbjct: 1   MANFFSLGGNQEQQHQEISSSQALVPTESNNWFLYRNEHHHHHHNQEIPNT---YKG-FE 60

Query: 61  LWQQ----QHHHHQHPQQEQ---PLFQTQSR---------TPYSAALPVRTSDESSSRSG 120
           LWQ     QH H  H QQ+Q   P++  Q            P  +   +   D  +SRSG
Sbjct: 61  LWQSGNTPQHQHQHHQQQQQFRHPIYPLQDLYSTDVGLGVGPSRSGFDISAGDHEASRSG 120

Query: 121 NFMMIGSGSGGGGISCQDCGNQAKKDCVHMRCRTCCKSRGFHCETHVKSTWVPAAKRRER 180
             MM    SGGGGISCQDCGNQAKKDC HMRCRTCCKSRGF C+THVKSTWVPAAKRRER
Sbjct: 121 FVMM---RSGGGGISCQDCGNQAKKDCQHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRER 180

Query: 181 QEKLAALQTQHQLHLHGDNNPKRHRDYNPTSSSSLACTLIPNNTS 199
           Q++LAALQ Q Q H + +NN K  R     S+SSL  T +P+NT+
Sbjct: 181 QQQLAALQQQQQGHNNNNNNHKNKRQREDPSASSLVSTRLPSNTN 218

[Close]

BLAST of Cp4.1LG10g00380 vs. ExPASy Swiss-Prot
Match: Q9SD40 (Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2)

HSP 1 Score: 152.9 bits (385), Expect = 4.0e-36
Identity = 111/257 (43.19%), Postives = 138/257 (53.70%), Query Frame = 0


Query: 1   MSGFFSLGGGGREDHQDHQDHQDHQDHQDHQQNNDTNP-----ETLFWYK---------- 60
           M+GFFSL GGG        + +DH+        ++TNP     E   WY+          
Sbjct: 1   MAGFFSLDGGGGGGGGGGNNQEDHR--------SNTNPPPPVSEAWLWYRNPNVNANANT 60

Query: 61  --------------GNVELWQ---QQHHHHQHPQQEQPLFQTQSRTPYSAA--------L 120
                         G +ELWQ   QQ    QH Q +Q L    S               +
Sbjct: 61  NVNANAPSSSNAALGTLELWQNHNQQEIMFQHQQHQQRLDLYSSAAGLGVGPSNHNQFDI 120

Query: 121 PVRTSDESSSRSGNFMMI---GSGSGGGGISCQDCGNQAKKDCVHMRCRTCCKSRGFHCE 180
              TS   + R+   MMI   GSG G GG+SCQDCGNQAKKDC HMRCRTCCKSRGF C 
Sbjct: 121 SGETSTAGAGRAAAMMMIRSGGSGGGSGGVSCQDCGNQAKKDCSHMRCRTCCKSRGFECS 180

Query: 181 THVKSTWVPAAKRRERQEKLAALQTQHQLHLHGDNNPKRHRDYNPTSSSSLACTLIPNNT 209
           THV+STWVPAAKRRERQ++LA +Q Q QL   G++ PKRHR+  P +SSSL CT IP+++
Sbjct: 181 THVRSTWVPAAKRRERQQQLATVQPQTQLP-RGESVPKRHRENLPATSSSLVCTRIPSHS 240

[Close]

BLAST of Cp4.1LG10g00380 vs. ExPASy Swiss-Prot
Match: Q9XGX0 (Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 7.8e-32
Identity = 103/227 (45.37%), Postives = 130/227 (57.27%), Query Frame = 0


Query: 1   MSGFFSLG-GGGREDHQDHQDHQDHQDHQD--------HQQNNDTNPETLFWYKGNVELW 60
           M+GFFSLG GGG     +H+ + ++             +  +N    E    YKG +ELW
Sbjct: 1   MAGFFSLGHGGGGNTPDNHRTNTNNPSSSGTESWLWCRNPNSNADGGEAGPSYKGTLELW 60

Query: 61  QQQHHHHQHPQQEQPLFQTQSRTPYSAALPVRTSDES--SSRSGNFMMIGSGSGGGGISC 120
           Q  ++     QQ+Q   Q       +A L V  S+ S   +  G  MM+ SGSG GG SC
Sbjct: 61  QHPNNQEIIFQQQQQQQQRLDLYTSAAGLGVGPSNRSLIETSGGALMMMRSGSGSGGPSC 120

Query: 121 QDCGNQAKKDCVHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQEKLAALQTQHQLHLH 180
           QDCGNQ+KKDC HMRCRTCCKSRG  C THVKSTWVPAAKRRERQ++L+  Q   QL   
Sbjct: 121 QDCGNQSKKDCSHMRCRTCCKSRGLDCPTHVKSTWVPAAKRRERQQQLSTGQQPQQL--- 180

Query: 181 GDNNPKRHRDYNPTSSSSLACTLIPNNTSVFL--------TSSSSVF 209
           G + PKR R+  P  S+S+A T IP+N +  L         SSS+VF
Sbjct: 181 GGSVPKRQRERIPARSTSMAYTRIPSNNTSGLEVGNFPPEVSSSAVF 224

[Close]

BLAST of Cp4.1LG10g00380 vs. ExPASy Swiss-Prot
Match: F4KH89 (Protein SHI RELATED SEQUENCE 8 OS=Arabidopsis thaliana OX=3702 GN=SRS8 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 6.6e-31
Identity = 72/118 (61.02%), Postives = 85/118 (72.03%), Query Frame = 0


Query: 84  TSDESSSRSGNFMMIGSG--SGGGGISCQDCGNQAKKDCVHMRCRTCCKSRGFHCETHVK 143
           T   S +     MMI SG   G GG+SCQD GNQAKKDC HMRCRTCCKSRGF C THV+
Sbjct: 25  THPRSIAERAAMMMIRSGGSGGSGGVSCQDFGNQAKKDCSHMRCRTCCKSRGFECSTHVR 84

Query: 144 STWVPAAKRRERQEKLAALQTQHQLHLHGDNNPKRHRDYNPTSSSSLACTLIPNNTSV 200
           STWVPA KRRERQ++LA +Q Q QL   G++ PKRHR+  P +SSSL CT IP ++ +
Sbjct: 85  STWVPATKRRERQQQLATVQPQTQLP-RGESVPKRHRENLPATSSSLVCTRIPFHSGI 141

[Close]

BLAST of Cp4.1LG10g00380 vs. ExPASy Swiss-Prot
Match: Q9LQZ5 (Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=SRS5 PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.0e-28
Identity = 96/230 (41.74%), Postives = 124/230 (53.91%), Query Frame = 0


Query: 1   MSGFFSLGGGGREDHQDHQDHQDHQDHQDHQQNNDTNPETLFWYKGNV-------ELWQQ 60
           M+GFF LGG     + + QDH  HQ  +DH   + +N   L+ YK  +       E+W  
Sbjct: 1   MAGFFYLGGRDNNSNNNKQDH--HQVDKDHHHQDKSN--YLYLYKDEIYNNNKGFEIWPP 60

Query: 61  QHHHHQHPQQEQPLFQTQSRTPYSAALPVRTSDESSSRSGN------FMMIGSGSGG--- 120
           Q+   Q  QQ+Q   Q  S      +  +  S  SS+ + N      F ++     G   
Sbjct: 61  QYFQQQEHQQQQQQQQHASAPANFYSFGMVPSGSSSNNNNNRSRSLYFNVVSDHEPGGFT 120

Query: 121 ----GGISCQDCGNQAKKDCVHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQEKLAAL 180
               GG++CQDCGNQAKKDC HMRCRTCCKSRGFHC+THVKSTWVPAAKRRER  +LA+L
Sbjct: 121 VTRQGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASL 180

Query: 181 Q--------TQHQLHLH----GDNNPKRHRDYNPTSSSSLACTLIPNNTS 199
           Q        TQ+   L     GDNN    +D++    S+LA T + N  S
Sbjct: 181 QHHSASSRETQNAKRLREASGGDNND--DKDHSGGGGSALANTRVVNANS 224

[Close]

BLAST of Cp4.1LG10g00380 vs. NCBI nr
Match: XP_023543255.1 (protein SHI RELATED SEQUENCE 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 406 bits (1043), Expect = 9.51e-141
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0


Query: 1   MSGFFSLGGGGREDHQDHQDHQDHQDHQDHQQNNDTNPETLFWYKGNVELWQQQHHHHQH 60
           MSGFFSLGGGGREDHQDHQDHQDHQDHQDHQQNNDTNPETLFWYKGNVELWQQQHHHHQH
Sbjct: 1   MSGFFSLGGGGREDHQDHQDHQDHQDHQDHQQNNDTNPETLFWYKGNVELWQQQHHHHQH 60

Query: 61  PQQEQPLFQTQSRTPYSAALPVRTSDESSSRSGNFMMIGSGSGGGGISCQDCGNQAKKDC 120
           PQQEQPLFQTQSRTPYSAALPVRTSDESSSRSGNFMMIGSGSGGGGISCQDCGNQAKKDC
Sbjct: 61  PQQEQPLFQTQSRTPYSAALPVRTSDESSSRSGNFMMIGSGSGGGGISCQDCGNQAKKDC 120

Query: 121 VHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQEKLAALQTQHQLHLHGDNNPKRHRDY 180
           VHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQEKLAALQTQHQLHLHGDNNPKRHRDY
Sbjct: 121 VHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQEKLAALQTQHQLHLHGDNNPKRHRDY 180

Query: 181 NPTSSSSLACTLIPNNTS 198
           NPTSSSSLACTLIPNNTS
Sbjct: 181 NPTSSSSLACTLIPNNTS 198

[Close]

BLAST of Cp4.1LG10g00380 vs. NCBI nr
Match: KAG6603931.1 (Protein SHORT INTERNODES, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 386 bits (991), Expect = 7.79e-133
Identity = 192/199 (96.48%), Postives = 195/199 (97.99%), Query Frame = 0


Query: 1   MSGFFSLGGGGREDHQDHQDHQDHQDHQDHQQNNDTNPETLFWYKGNVELWQQQHHHH-Q 60
           MSGFFSLGGGGREDHQ+   HQ+HQDHQ+HQQNNDTNPETLFWYKGNVELWQQQHHHH Q
Sbjct: 1   MSGFFSLGGGGREDHQE---HQEHQDHQEHQQNNDTNPETLFWYKGNVELWQQQHHHHHQ 60

Query: 61  HPQQEQPLFQTQSRTPYSAALPVRTSDESSSRSGNFMMIGSGSGGGGISCQDCGNQAKKD 120
           HPQQEQPLFQTQSRTPYSAALPVRTSDESSSRSGNFMMIGSGSGGGGISCQDCGNQAKKD
Sbjct: 61  HPQQEQPLFQTQSRTPYSAALPVRTSDESSSRSGNFMMIGSGSGGGGISCQDCGNQAKKD 120

Query: 121 CVHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQEKLAALQTQHQLHLHGDNNPKRHRD 180
           CVHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQEKLAALQTQHQLHLHGDNNPKRHRD
Sbjct: 121 CVHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQEKLAALQTQHQLHLHGDNNPKRHRD 180

Query: 181 YNPTSSSSLACTLIPNNTS 198
           YNPTSSSSLACTLIPNNTS
Sbjct: 181 YNPTSSSSLACTLIPNNTS 196

[Close]

BLAST of Cp4.1LG10g00380 vs. NCBI nr
Match: XP_022949893.1 (protein SHI RELATED SEQUENCE 1-like [Cucurbita moschata] >XP_022949894.1 protein SHI RELATED SEQUENCE 1-like [Cucurbita moschata] >XP_022949895.1 protein SHI RELATED SEQUENCE 1-like [Cucurbita moschata])

HSP 1 Score: 385 bits (990), Expect = 9.30e-133
Identity = 190/198 (95.96%), Postives = 192/198 (96.97%), Query Frame = 0


Query: 1   MSGFFSLGGGGREDHQDHQDHQDHQDHQDHQQNNDTNPETLFWYKGNVELWQQQHHHHQH 60
           MSGFFSLGGGGRE+      HQDHQDHQ+HQQNNDTNPETLFWYKGNVELWQQQHHHHQH
Sbjct: 1   MSGFFSLGGGGREE------HQDHQDHQEHQQNNDTNPETLFWYKGNVELWQQQHHHHQH 60

Query: 61  PQQEQPLFQTQSRTPYSAALPVRTSDESSSRSGNFMMIGSGSGGGGISCQDCGNQAKKDC 120
           PQQEQPLFQTQSRTPYSAALPVRTSDESSSRSGNFMMIGSGSGGGGISCQDCGNQAKKDC
Sbjct: 61  PQQEQPLFQTQSRTPYSAALPVRTSDESSSRSGNFMMIGSGSGGGGISCQDCGNQAKKDC 120

Query: 121 VHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQEKLAALQTQHQLHLHGDNNPKRHRDY 180
           VHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQEKLAALQTQHQLHLHGDNNPKRHRDY
Sbjct: 121 VHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQEKLAALQTQHQLHLHGDNNPKRHRDY 180

Query: 181 NPTSSSSLACTLIPNNTS 198
           NPTSSSSLACTLIPNNTS
Sbjct: 181 NPTSSSSLACTLIPNNTS 192

[Close]

BLAST of Cp4.1LG10g00380 vs. NCBI nr
Match: XP_022979003.1 (protein SHI RELATED SEQUENCE 1-like [Cucurbita maxima] >XP_022979004.1 protein SHI RELATED SEQUENCE 1-like [Cucurbita maxima])

HSP 1 Score: 359 bits (922), Expect = 1.62e-122
Identity = 181/198 (91.41%), Postives = 181/198 (91.41%), Query Frame = 0


Query: 1   MSGFFSLGGGGREDHQDHQDHQDHQDHQDHQQNNDTNPETLFWYKGNVELWQQQHHHHQH 60
           MSGFFSLGGGGREDHQ            DHQQNNDTNPETLFWYKGNVELWQQQ HHH H
Sbjct: 1   MSGFFSLGGGGREDHQ------------DHQQNNDTNPETLFWYKGNVELWQQQQHHH-H 60

Query: 61  PQQEQPLFQTQSRTPYSAALPVRTSDESSSRSGNFMMIGSGSGGGGISCQDCGNQAKKDC 120
           PQQEQPLFQTQSR PYSA LPVRTSDESSSRSGNFMMIGSGSGGGGISCQDCGNQAKKDC
Sbjct: 61  PQQEQPLFQTQSRIPYSAPLPVRTSDESSSRSGNFMMIGSGSGGGGISCQDCGNQAKKDC 120

Query: 121 VHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQEKLAALQTQHQLHLHGDNNPKRHRDY 180
            HMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQEKLAALQTQHQLHLHGDNNPKRHRDY
Sbjct: 121 AHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQEKLAALQTQHQLHLHGDNNPKRHRDY 180

Query: 181 NPTSSSSLACTLIPNNTS 198
           NPTSSSSLACTLIPNNTS
Sbjct: 181 NPTSSSSLACTLIPNNTS 185

[Close]

BLAST of Cp4.1LG10g00380 vs. NCBI nr
Match: XP_038881348.1 (protein SHI RELATED SEQUENCE 1-like [Benincasa hispida])

HSP 1 Score: 291 bits (744), Expect = 4.27e-95
Identity = 161/213 (75.59%), Postives = 169/213 (79.34%), Query Frame = 0


Query: 1   MSGFFSLGGGG--REDHQDHQDHQDHQDHQDHQQNNDTN-----PET-LFWYKGNVELWQ 60
           MSGFF+LGGGG  REDHQD            HQQ+N  N     P+T LFWYKGNVELWQ
Sbjct: 1   MSGFFTLGGGGGGREDHQD-----------QHQQHNRPNQIIPPPDTSLFWYKGNVELWQ 60

Query: 61  QQHHHHQHPQQEQPLFQTQSRT-----PYSAALPVRTSDESSSRSGNFMMIGSGSGGGGI 120
           QQ       QQEQPLFQTQSRT     PYSA +P+R SDESSSRSGNFMMI SGSGGGGI
Sbjct: 61  QQ----PQQQQEQPLFQTQSRTTTTTPPYSATIPLRNSDESSSRSGNFMMISSGSGGGGI 120

Query: 121 SCQDCGNQAKKDCVHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQEKLAALQTQH--- 180
           SCQDCGNQAKKDC HMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQ+KLAALQ+ H   
Sbjct: 121 SCQDCGNQAKKDCSHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQDKLAALQSHHHHH 180

Query: 181 -QLHLHGDNNPKRHRDYNPTSSSSLACTLIPNN 196
            QLHLHGDNNPKRHRDYNPTS+SSLACTLIP N
Sbjct: 181 HQLHLHGDNNPKRHRDYNPTSTSSLACTLIPTN 198

[Close]

BLAST of Cp4.1LG10g00380 vs. ExPASy TrEMBL
Match: A0A6J1GE84 (protein SHI RELATED SEQUENCE 1-like OS=Cucurbita moschata OX=3662 GN=LOC111453153 PE=3 SV=1)

HSP 1 Score: 385 bits (990), Expect = 4.50e-133
Identity = 190/198 (95.96%), Postives = 192/198 (96.97%), Query Frame = 0


Query: 1   MSGFFSLGGGGREDHQDHQDHQDHQDHQDHQQNNDTNPETLFWYKGNVELWQQQHHHHQH 60
           MSGFFSLGGGGRE+      HQDHQDHQ+HQQNNDTNPETLFWYKGNVELWQQQHHHHQH
Sbjct: 1   MSGFFSLGGGGREE------HQDHQDHQEHQQNNDTNPETLFWYKGNVELWQQQHHHHQH 60

Query: 61  PQQEQPLFQTQSRTPYSAALPVRTSDESSSRSGNFMMIGSGSGGGGISCQDCGNQAKKDC 120
           PQQEQPLFQTQSRTPYSAALPVRTSDESSSRSGNFMMIGSGSGGGGISCQDCGNQAKKDC
Sbjct: 61  PQQEQPLFQTQSRTPYSAALPVRTSDESSSRSGNFMMIGSGSGGGGISCQDCGNQAKKDC 120

Query: 121 VHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQEKLAALQTQHQLHLHGDNNPKRHRDY 180
           VHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQEKLAALQTQHQLHLHGDNNPKRHRDY
Sbjct: 121 VHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQEKLAALQTQHQLHLHGDNNPKRHRDY 180

Query: 181 NPTSSSSLACTLIPNNTS 198
           NPTSSSSLACTLIPNNTS
Sbjct: 181 NPTSSSSLACTLIPNNTS 192

[Close]

BLAST of Cp4.1LG10g00380 vs. ExPASy TrEMBL
Match: A0A6J1IUW1 (protein SHI RELATED SEQUENCE 1-like OS=Cucurbita maxima OX=3661 GN=LOC111478781 PE=3 SV=1)

HSP 1 Score: 359 bits (922), Expect = 7.83e-123
Identity = 181/198 (91.41%), Postives = 181/198 (91.41%), Query Frame = 0


Query: 1   MSGFFSLGGGGREDHQDHQDHQDHQDHQDHQQNNDTNPETLFWYKGNVELWQQQHHHHQH 60
           MSGFFSLGGGGREDHQ            DHQQNNDTNPETLFWYKGNVELWQQQ HHH H
Sbjct: 1   MSGFFSLGGGGREDHQ------------DHQQNNDTNPETLFWYKGNVELWQQQQHHH-H 60

Query: 61  PQQEQPLFQTQSRTPYSAALPVRTSDESSSRSGNFMMIGSGSGGGGISCQDCGNQAKKDC 120
           PQQEQPLFQTQSR PYSA LPVRTSDESSSRSGNFMMIGSGSGGGGISCQDCGNQAKKDC
Sbjct: 61  PQQEQPLFQTQSRIPYSAPLPVRTSDESSSRSGNFMMIGSGSGGGGISCQDCGNQAKKDC 120

Query: 121 VHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQEKLAALQTQHQLHLHGDNNPKRHRDY 180
            HMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQEKLAALQTQHQLHLHGDNNPKRHRDY
Sbjct: 121 AHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQEKLAALQTQHQLHLHGDNNPKRHRDY 180

Query: 181 NPTSSSSLACTLIPNNTS 198
           NPTSSSSLACTLIPNNTS
Sbjct: 181 NPTSSSSLACTLIPNNTS 185

[Close]

BLAST of Cp4.1LG10g00380 vs. ExPASy TrEMBL
Match: A0A5A7SN81 (Protein SHI RELATED SEQUENCE 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001580 PE=3 SV=1)

HSP 1 Score: 263 bits (672), Expect = 1.04e-84
Identity = 154/213 (72.30%), Postives = 163/213 (76.53%), Query Frame = 0


Query: 1   MSGFFSLGGGG--REDHQDHQDHQDHQDHQDHQQNNDTNP---ETLFWYK-GNVELWQQQ 60
           MSGFF+LGGGG  RE+ Q+           +++ N   +P    +LFWYK GNVELWQQQ
Sbjct: 1   MSGFFTLGGGGGGREEEQN-----------NNRPNQFIHPPPDSSLFWYKAGNVELWQQQ 60

Query: 61  HHHHQHPQQEQPLFQTQSRT-----PYSAALPVRTSDESSSRSGNFMMIGSGSGGGGISC 120
             HH H  QEQPLFQTQSRT     PYSA L VR SDESSSRSGNFMMI SGSGGGGISC
Sbjct: 61  QQHHHH-HQEQPLFQTQSRTTTTTTPYSAPLTVRNSDESSSRSGNFMMISSGSGGGGISC 120

Query: 121 QDCGNQAKKDCVHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQEKLAALQTQH----- 180
           QDCGNQAKKDC HMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQ+KLAALQT H     
Sbjct: 121 QDCGNQAKKDCSHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQDKLAALQTHHHHQQQ 180

Query: 181 QLHLHG-DNNPKRHRDYNPTSSSSLACTLIPNN 196
           QL LHG DNNPKRHRDYN   SSSLACTLIP N
Sbjct: 181 QLQLHGGDNNPKRHRDYN---SSSLACTLIPTN 198

[Close]

BLAST of Cp4.1LG10g00380 vs. ExPASy TrEMBL
Match: A0A1S3B2J6 (protein SHI RELATED SEQUENCE 1 OS=Cucumis melo OX=3656 GN=LOC103485098 PE=3 SV=1)

HSP 1 Score: 263 bits (672), Expect = 1.04e-84
Identity = 154/213 (72.30%), Postives = 163/213 (76.53%), Query Frame = 0


Query: 1   MSGFFSLGGGG--REDHQDHQDHQDHQDHQDHQQNNDTNP---ETLFWYK-GNVELWQQQ 60
           MSGFF+LGGGG  RE+ Q+           +++ N   +P    +LFWYK GNVELWQQQ
Sbjct: 1   MSGFFTLGGGGGGREEEQN-----------NNRPNQFIHPPPDSSLFWYKAGNVELWQQQ 60

Query: 61  HHHHQHPQQEQPLFQTQSRT-----PYSAALPVRTSDESSSRSGNFMMIGSGSGGGGISC 120
             HH H  QEQPLFQTQSRT     PYSA L VR SDESSSRSGNFMMI SGSGGGGISC
Sbjct: 61  QQHHHH-HQEQPLFQTQSRTTTTTTPYSAPLTVRNSDESSSRSGNFMMISSGSGGGGISC 120

Query: 121 QDCGNQAKKDCVHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQEKLAALQTQH----- 180
           QDCGNQAKKDC HMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQ+KLAALQT H     
Sbjct: 121 QDCGNQAKKDCSHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQDKLAALQTHHHHQQQ 180

Query: 181 QLHLHG-DNNPKRHRDYNPTSSSSLACTLIPNN 196
           QL LHG DNNPKRHRDYN   SSSLACTLIP N
Sbjct: 181 QLQLHGGDNNPKRHRDYN---SSSLACTLIPTN 198

[Close]

BLAST of Cp4.1LG10g00380 vs. ExPASy TrEMBL
Match: A0A0A0KGL4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G504650 PE=3 SV=1)

HSP 1 Score: 260 bits (665), Expect = 1.32e-83
Identity = 154/220 (70.00%), Postives = 161/220 (73.18%), Query Frame = 0


Query: 1   MSGFFSLGGGGREDHQDHQDHQDHQDHQDHQQNNDTNPE--------TLFWYK-GNVELW 60
           MSGFF+LGGGG                +D +QNN+   +        +LFWYK GNVELW
Sbjct: 1   MSGFFTLGGGGGG--------------RDEEQNNNRPNQFIHPPPDSSLFWYKAGNVELW 60

Query: 61  QQQH---HHHQHPQQEQPLFQTQSRT-----PYSAALPVRTSDESSSRSGNFMMIGSGSG 120
           QQQ    HHH H  QEQPLFQTQSRT     PYSA L VR SDESSSRSGNFMMI SGSG
Sbjct: 61  QQQQQQQHHHHH--QEQPLFQTQSRTTTTTTPYSAPLAVRNSDESSSRSGNFMMISSGSG 120

Query: 121 GGGISCQDCGNQAKKDCVHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQEKLAALQTQ 180
           GGGISCQDCGNQAKKDC HMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQ+KLAALQT 
Sbjct: 121 GGGISCQDCGNQAKKDCSHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQDKLAALQTH 180

Query: 181 H------QLHLHG-DNNPKRHRDYNPTSSSSLACTLIPNN 196
           H      QL LHG DNNPKRHRDYN   SSSLACTLIP N
Sbjct: 181 HHHHHQQQLQLHGGDNNPKRHRDYN---SSSLACTLIPTN 201

[Close]

BLAST of Cp4.1LG10g00380 vs. TAIR 10
Match: AT3G51060.1 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 152.9 bits (385), Expect = 2.8e-37
Identity = 111/257 (43.19%), Postives = 138/257 (53.70%), Query Frame = 0


Query: 1   MSGFFSLGGGGREDHQDHQDHQDHQDHQDHQQNNDTNP-----ETLFWYK---------- 60
           M+GFFSL GGG        + +DH+        ++TNP     E   WY+          
Sbjct: 1   MAGFFSLDGGGGGGGGGGNNQEDHR--------SNTNPPPPVSEAWLWYRNPNVNANANT 60

Query: 61  --------------GNVELWQ---QQHHHHQHPQQEQPLFQTQSRTPYSAA--------L 120
                         G +ELWQ   QQ    QH Q +Q L    S               +
Sbjct: 61  NVNANAPSSSNAALGTLELWQNHNQQEIMFQHQQHQQRLDLYSSAAGLGVGPSNHNQFDI 120

Query: 121 PVRTSDESSSRSGNFMMI---GSGSGGGGISCQDCGNQAKKDCVHMRCRTCCKSRGFHCE 180
              TS   + R+   MMI   GSG G GG+SCQDCGNQAKKDC HMRCRTCCKSRGF C 
Sbjct: 121 SGETSTAGAGRAAAMMMIRSGGSGGGSGGVSCQDCGNQAKKDCSHMRCRTCCKSRGFECS 180

Query: 181 THVKSTWVPAAKRRERQEKLAALQTQHQLHLHGDNNPKRHRDYNPTSSSSLACTLIPNNT 209
           THV+STWVPAAKRRERQ++LA +Q Q QL   G++ PKRHR+  P +SSSL CT IP+++
Sbjct: 181 THVRSTWVPAAKRRERQQQLATVQPQTQLP-RGESVPKRHRENLPATSSSLVCTRIPSHS 240

[Close]

BLAST of Cp4.1LG10g00380 vs. TAIR 10
Match: AT5G66350.1 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 138.7 bits (348), Expect = 5.5e-33
Identity = 103/227 (45.37%), Postives = 130/227 (57.27%), Query Frame = 0


Query: 1   MSGFFSLG-GGGREDHQDHQDHQDHQDHQD--------HQQNNDTNPETLFWYKGNVELW 60
           M+GFFSLG GGG     +H+ + ++             +  +N    E    YKG +ELW
Sbjct: 1   MAGFFSLGHGGGGNTPDNHRTNTNNPSSSGTESWLWCRNPNSNADGGEAGPSYKGTLELW 60

Query: 61  QQQHHHHQHPQQEQPLFQTQSRTPYSAALPVRTSDES--SSRSGNFMMIGSGSGGGGISC 120
           Q  ++     QQ+Q   Q       +A L V  S+ S   +  G  MM+ SGSG GG SC
Sbjct: 61  QHPNNQEIIFQQQQQQQQRLDLYTSAAGLGVGPSNRSLIETSGGALMMMRSGSGSGGPSC 120

Query: 121 QDCGNQAKKDCVHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQEKLAALQTQHQLHLH 180
           QDCGNQ+KKDC HMRCRTCCKSRG  C THVKSTWVPAAKRRERQ++L+  Q   QL   
Sbjct: 121 QDCGNQSKKDCSHMRCRTCCKSRGLDCPTHVKSTWVPAAKRRERQQQLSTGQQPQQL--- 180

Query: 181 GDNNPKRHRDYNPTSSSSLACTLIPNNTSVFL--------TSSSSVF 209
           G + PKR R+  P  S+S+A T IP+N +  L         SSS+VF
Sbjct: 181 GGSVPKRQRERIPARSTSMAYTRIPSNNTSGLEVGNFPPEVSSSAVF 224

[Close]

BLAST of Cp4.1LG10g00380 vs. TAIR 10
Match: AT5G33210.2 (SHI-related sequence 8 )

HSP 1 Score: 136.3 bits (342), Expect = 2.7e-32
Identity = 70/101 (69.31%), Postives = 79/101 (78.22%), Query Frame = 0


Query: 96  MMIGSG--SGGGGISCQDCGNQAKKDCVHMRCRTCCKSRGFHCETHVKSTWVPAAKRRER 155
           MMI SG   G GG+SCQD GNQAKKDC HMRCRTCCKSRGF C THV+STWVPA KRRER
Sbjct: 2   MMIRSGGSGGSGGVSCQDFGNQAKKDCSHMRCRTCCKSRGFECSTHVRSTWVPATKRRER 61

Query: 156 QEKLAALQTQHQLHLHGDNNPKRHRDYNPTSSSSLACTLIP 195
           Q++LA +Q Q QL   G++ PKRHR+  P +SSSL CT IP
Sbjct: 62  QQQLATVQPQTQLP-RGESVPKRHRENLPATSSSLVCTRIP 101

[Close]

BLAST of Cp4.1LG10g00380 vs. TAIR 10
Match: AT5G33210.1 (SHI-related sequence 8 )

HSP 1 Score: 135.6 bits (340), Expect = 4.7e-32
Identity = 72/118 (61.02%), Postives = 85/118 (72.03%), Query Frame = 0


Query: 84  TSDESSSRSGNFMMIGSG--SGGGGISCQDCGNQAKKDCVHMRCRTCCKSRGFHCETHVK 143
           T   S +     MMI SG   G GG+SCQD GNQAKKDC HMRCRTCCKSRGF C THV+
Sbjct: 25  THPRSIAERAAMMMIRSGGSGGSGGVSCQDFGNQAKKDCSHMRCRTCCKSRGFECSTHVR 84

Query: 144 STWVPAAKRRERQEKLAALQTQHQLHLHGDNNPKRHRDYNPTSSSSLACTLIPNNTSV 200
           STWVPA KRRERQ++LA +Q Q QL   G++ PKRHR+  P +SSSL CT IP ++ +
Sbjct: 85  STWVPATKRRERQQQLATVQPQTQLP-RGESVPKRHRENLPATSSSLVCTRIPFHSGI 141

[Close]

BLAST of Cp4.1LG10g00380 vs. TAIR 10
Match: AT1G75520.1 (SHI-related sequence 5 )

HSP 1 Score: 126.3 bits (316), Expect = 2.8e-29
Identity = 96/230 (41.74%), Postives = 124/230 (53.91%), Query Frame = 0


Query: 1   MSGFFSLGGGGREDHQDHQDHQDHQDHQDHQQNNDTNPETLFWYKGNV-------ELWQQ 60
           M+GFF LGG     + + QDH  HQ  +DH   + +N   L+ YK  +       E+W  
Sbjct: 1   MAGFFYLGGRDNNSNNNKQDH--HQVDKDHHHQDKSN--YLYLYKDEIYNNNKGFEIWPP 60

Query: 61  QHHHHQHPQQEQPLFQTQSRTPYSAALPVRTSDESSSRSGN------FMMIGSGSGG--- 120
           Q+   Q  QQ+Q   Q  S      +  +  S  SS+ + N      F ++     G   
Sbjct: 61  QYFQQQEHQQQQQQQQHASAPANFYSFGMVPSGSSSNNNNNRSRSLYFNVVSDHEPGGFT 120

Query: 121 ----GGISCQDCGNQAKKDCVHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQEKLAAL 180
               GG++CQDCGNQAKKDC HMRCRTCCKSRGFHC+THVKSTWVPAAKRRER  +LA+L
Sbjct: 121 VTRQGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASL 180

Query: 181 Q--------TQHQLHLH----GDNNPKRHRDYNPTSSSSLACTLIPNNTS 199
           Q        TQ+   L     GDNN    +D++    S+LA T + N  S
Sbjct: 181 QHHSASSRETQNAKRLREASGGDNND--DKDHSGGGGSALANTRVVNANS 224

The following BLAST results are available for this feature:

BLAST of Cp4.1LG10g00380 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
K4B6C9	3.9e-39	48.00	Protein EXPRESSION OF TERPENOIDS 1 OS=Solanum lycopersicum OX=4081 GN=EOT1 PE=2 ...	[more]
Q9SD40	4.0e-36	43.19	Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2	[more]
Q9XGX0	7.8e-32	45.37	Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1	[more]
F4KH89	6.6e-31	61.02	Protein SHI RELATED SEQUENCE 8 OS=Arabidopsis thaliana OX=3702 GN=SRS8 PE=3 SV=1	[more]
Q9LQZ5	4.0e-28	41.74	Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=SRS5 PE=1 SV=1	[more]

BLAST of Cp4.1LG10g00380 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023543255.1	9.51e-141	100.00	protein SHI RELATED SEQUENCE 1-like [Cucurbita pepo subsp. pepo]	[more]
KAG6603931.1	7.79e-133	96.48	Protein SHORT INTERNODES, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022949893.1	9.30e-133	95.96	protein SHI RELATED SEQUENCE 1-like [Cucurbita moschata] >XP_022949894.1 protein...	[more]
XP_022979003.1	1.62e-122	91.41	protein SHI RELATED SEQUENCE 1-like [Cucurbita maxima] >XP_022979004.1 protein S...	[more]
XP_038881348.1	4.27e-95	75.59	protein SHI RELATED SEQUENCE 1-like [Benincasa hispida]	[more]

BLAST of Cp4.1LG10g00380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GE84	4.50e-133	95.96	protein SHI RELATED SEQUENCE 1-like OS=Cucurbita moschata OX=3662 GN=LOC11145315...	[more]
A0A6J1IUW1	7.83e-123	91.41	protein SHI RELATED SEQUENCE 1-like OS=Cucurbita maxima OX=3661 GN=LOC111478781 ...	[more]
A0A5A7SN81	1.04e-84	72.30	Protein SHI RELATED SEQUENCE 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3B2J6	1.04e-84	72.30	protein SHI RELATED SEQUENCE 1 OS=Cucumis melo OX=3656 GN=LOC103485098 PE=3 SV=1	[more]
A0A0A0KGL4	1.32e-83	70.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G504650 PE=3 SV=1	[more]

BLAST of Cp4.1LG10g00380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G51060.1	2.8e-37	43.19	Lateral root primordium (LRP) protein-related	[more]
AT5G66350.1	5.5e-33	45.37	Lateral root primordium (LRP) protein-related	[more]
AT5G33210.2	2.7e-32	69.31	SHI-related sequence 8	[more]
AT5G33210.1	4.7e-32	61.02	SHI-related sequence 8	[more]
AT1G75520.1	2.8e-29	41.74	SHI-related sequence 5	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF05142	DUF702	coord: 106..188 e-value: 3.8E-35 score: 121.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..39
None	No IPR available	PANTHER	PTHR31604:SF4	PROTEIN SHORT INTERNODES	coord: 1..196
IPR006510	Zinc finger, lateral root primordium type 1	TIGRFAM	TIGR01623	TIGR01623	coord: 108..150 e-value: 1.7E-28 score: 96.2
IPR007818	SHI protein family	PANTHER	PTHR31604	PROTEIN LATERAL ROOT PRIMORDIUM 1	coord: 1..196

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG10g00380.1	Cp4.1LG10g00380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0009851	auxin biosynthetic process
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding