Cp4.1LG10g00040 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG10g00040
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Pentatricopeptide repeat-containing protein
Location	Cp4.1LG10: 3916375 .. 3918254 (-)
RNA-Seq Expression	Cp4.1LG10g00040
Synteny	Cp4.1LG10g00040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCGATAGTGGCGGCAACTATGTGGAAGAAGAACACGAAGACGAAGAATTCTGTGTGAAAGTAAATCAATGTCATACCGCAAATGAATGGCAAGAATTTACTCCCGACAACTCTTTCGCTTCACACGCGCCTCCCTCCCTCCGCCCTCTAAATCCATTGATCGATGTTCTTCTCCATTTTGCTCTTTTGCAGAACCAGATCTTTCACTCGACACCAGAAATCCTCCCAGACATAACCGATGCCATTCGCTTCTTCAATCATGTCAGAGCATGAGAGAATTAGTTCAAATCCATGGCTATTTGATTACCTCTGGTCTATTCAACCACCATTTTTGGGCCAACCGAGTTCTATTGCAGGCATCGGAGTTTGGGGACATCGTTTATACTGTTTTGATCTTTAAGCTTATAAACGTTCCCAATGCCTTCTGCATCAATAGAGTAATTAAGGCTTATTCTCTTAGCTCAGTTCCTCTAGAGGCTGTGTTTGTGTATTTTCAATGGCTTGGTGATGGGTTTCGGCCTGATACCTACACTTTTCTTTCGCTTTTTTGCGCTTGTGCGAGTATTGGCTGTGGGTCTTCTGGGCGGAAGTGTCATGGACAGGCTTTCAAGAATGGGGTTGACTGTGTGATGGTTTTGAGAAATAGTTTGATTCATATGTATGCCTGTTGTGGTCATATTGAGCTTGGCCGGAAGGTGTTCGACGAAATGTCGACCCTGGATCTGGTGTCCTGGAATTCGATTGTTACAGCTTATGCAAGAGTTGGGGATTTGCATACCGCCCATGACATGTTTGATGCAATGCCTGAGAGAAATGTTGTTTCTTGGAATTTGATGATTAGTGAGTATTTGAGAGGTGGGAGTCCTGGCTGTGCAATGAAGTTGTTTAGGAATATGATGAAGATAGGAATAAGAGGGAACAGTACAACAATGGTAAACATTCTTGGTGCTTGTGGTCGATCGGCCAGGCTGAACGAAGGAAGATCGGTTCATGGTTTTATGTACCGTACTTCGATGAAGTTCTGTGTATTTATCGACACGGCATTGGTTGACATGTATGGCAAATGCCAGAGAGTTTCTGTTGCACGTAGACTATTTGACAGGATGGTGAATCGAAATTTGGTTACCTGGAATGCGATGGTTTTGGGGCATTGCCTACATGGGAATCCTGAAGATGGACTTAAGCTATTTGAGGAAATGGCTGCTAAATTAAGAGAAAGAAATGGGGAAGCAGGCAGTGGCAAGAAATTCAAGCAAGATGAAGGTGAACGAAAAGTTTTCCCGGACCAAATTACGTTTATTGGCGTTCTATGTGCCTGCGCCCGGGCGGGACTGCTGGAAGATGCAAATAACTACTTTGATGAGATGATCAATATATTCCTTGTGAGGCCAAATTTTGCACACTACTGGTGTTTGGCCAATGTTTATGTTGCAGCAGGGTTGATTCAGCAGGCTGTGGAAATACTTAGAAACATGCCTGAGGATATTGAGGACTTTTCATCAGAATTGGTTGTATGGACCAACTTGCTTGCGACATGTCGTTTCGGGGGAGATGTTTCTTTGGGAGAACAGATTGCAAACTATTTGATTGACATGGAGCCTAAGAATGAGTCATACTATAGATTGCTTCTGAATATTTATGCTGTAGCAGGGAGATGGGAGGATGTTTCAAGAATCAAAGTATTAATGAAAGAAAAACGACTCGGAACATTTCCGGGTTGTAGACTGGTAGACCTGAAAGAGATTGTTCACAGATTAAAATTGGGAAATCTTCTGCAAGAGGGGATGAAGGAGACAAACTCAGTGATGCACAAACTTGCTAGTGAAGTGAGTCTATTGTCAACTATTGCTGCAGGGCAATCGGATCTTAGAGTTTAG

mRNA sequence

ATGTGCGATAGTGGCGGCAACTATGTGGAAGAAGAACACGAAGACGAAGAATTCTGTGTGAAAGTAAATCAATGTCATACCGCAAATGAATGGCAAGAATTTACTCCCGACAACTCTTTCGCTTCACACGCGCCTCCCTCCCTCCGCCCTCTAAATCCATTGATCGATGTTCTTCTCCATTTTGCTCTTTTGCAGAACCAGATCTTTCACTCGACACCAGAAATCCTCCCAGACATAACCGATGCCATTCGCTTCTTCAATCATGCATCGGAGTTTGGGGACATCGTTTATACTGTTTTGATCTTTAAGCTTATAAACGTTCCCAATGCCTTCTGCATCAATAGAGTAATTAAGGCTTATTCTCTTAGCTCAGTTCCTCTAGAGGCTGTGTTTGTGTATTTTCAATGGCTTGGTGATGGGTTTCGGCCTGATACCTACACTTTTCTTTCGCTTTTTTGCGCTTGTGCGAGTATTGGCTGTGGGTCTTCTGGGCGGAAGTGTCATGGACAGGCTTTCAAGAATGGGGTTGACTGTGTGATGGTTTTGAGAAATAGTTTGATTCATATGTATGCCTGTTGTGGTCATATTGAGCTTGGCCGGAAGGTGTTCGACGAAATGTCGACCCTGGATCTGGTGTCCTGGAATTCGATTGTTACAGCTTATGCAAGAGTTGGGGATTTGCATACCGCCCATGACATGTTTGATGCAATGCCTGAGAGAAATGTTGTTTCTTGGAATTTGATGATTAGTGAGTATTTGAGAGGTGGGAGTCCTGGCTGTGCAATGAAGTTGTTTAGGAATATGATGAAGATAGGAATAAGAGGGAACAGTACAACAATGGTAAACATTCTTGGTGCTTGTGGTCGATCGGCCAGGCTGAACGAAGGAAGATCGGTTCATGGTTTTATGTACCGTACTTCGATGAAGTTCTGTGTATTTATCGACACGGCATTGGTTGACATGTATGGCAAATGCCAGAGAGTTTCTGTTGCACGTAGACTATTTGACAGGATGGTGAATCGAAATTTGGTTACCTGGAATGCGATGGTTTTGGGGCATTGCCTACATGGGAATCCTGAAGATGGACTTAAGCTATTTGAGGAAATGGCTGCTAAATTAAGAGAAAGAAATGGGGAAGCAGGCAGTGGCAAGAAATTCAAGCAAGATGAAGGTGAACGAAAAGTTTTCCCGGACCAAATTACGTTTATTGGCGTTCTATGTGCCTGCGCCCGGGCGGGACTGCTGGAAGATGCAAATAACTACTTTGATGAGATGATCAATATATTCCTTGTGAGGCCAAATTTTGCACACTACTGGTGTTTGGCCAATGTTTATGTTGCAGCAGGGTTGATTCAGCAGGCTGTGGAAATACTTAGAAACATGCCTGAGGATATTGAGGACTTTTCATCAGAATTGGTTGTATGGACCAACTTGCTTGCGACATGTCGTTTCGGGGGAGATGTTTCTTTGGGAGAACAGATTGCAAACTATTTGATTGACATGGAGCCTAAGAATGAGTCATACTATAGATTGCTTCTGAATATTTATGCTGTAGCAGGGAGATGGGAGGATGTTTCAAGAATCAAAGTATTAATGAAAGAAAAACGACTCGGAACATTTCCGGGTTGTAGACTGGTAGACCTGAAAGAGATTGTTCACAGATTAAAATTGGGAAATCTTCTGCAAGAGGGGATGAAGGAGACAAACTCAGTGATGCACAAACTTGCTAGTGAAGTGAGTCTATTGTCAACTATTGCTGCAGGGCAATCGGATCTTAGAGTTTAG

Coding sequence (CDS)

ATGTGCGATAGTGGCGGCAACTATGTGGAAGAAGAACACGAAGACGAAGAATTCTGTGTGAAAGTAAATCAATGTCATACCGCAAATGAATGGCAAGAATTTACTCCCGACAACTCTTTCGCTTCACACGCGCCTCCCTCCCTCCGCCCTCTAAATCCATTGATCGATGTTCTTCTCCATTTTGCTCTTTTGCAGAACCAGATCTTTCACTCGACACCAGAAATCCTCCCAGACATAACCGATGCCATTCGCTTCTTCAATCATGCATCGGAGTTTGGGGACATCGTTTATACTGTTTTGATCTTTAAGCTTATAAACGTTCCCAATGCCTTCTGCATCAATAGAGTAATTAAGGCTTATTCTCTTAGCTCAGTTCCTCTAGAGGCTGTGTTTGTGTATTTTCAATGGCTTGGTGATGGGTTTCGGCCTGATACCTACACTTTTCTTTCGCTTTTTTGCGCTTGTGCGAGTATTGGCTGTGGGTCTTCTGGGCGGAAGTGTCATGGACAGGCTTTCAAGAATGGGGTTGACTGTGTGATGGTTTTGAGAAATAGTTTGATTCATATGTATGCCTGTTGTGGTCATATTGAGCTTGGCCGGAAGGTGTTCGACGAAATGTCGACCCTGGATCTGGTGTCCTGGAATTCGATTGTTACAGCTTATGCAAGAGTTGGGGATTTGCATACCGCCCATGACATGTTTGATGCAATGCCTGAGAGAAATGTTGTTTCTTGGAATTTGATGATTAGTGAGTATTTGAGAGGTGGGAGTCCTGGCTGTGCAATGAAGTTGTTTAGGAATATGATGAAGATAGGAATAAGAGGGAACAGTACAACAATGGTAAACATTCTTGGTGCTTGTGGTCGATCGGCCAGGCTGAACGAAGGAAGATCGGTTCATGGTTTTATGTACCGTACTTCGATGAAGTTCTGTGTATTTATCGACACGGCATTGGTTGACATGTATGGCAAATGCCAGAGAGTTTCTGTTGCACGTAGACTATTTGACAGGATGGTGAATCGAAATTTGGTTACCTGGAATGCGATGGTTTTGGGGCATTGCCTACATGGGAATCCTGAAGATGGACTTAAGCTATTTGAGGAAATGGCTGCTAAATTAAGAGAAAGAAATGGGGAAGCAGGCAGTGGCAAGAAATTCAAGCAAGATGAAGGTGAACGAAAAGTTTTCCCGGACCAAATTACGTTTATTGGCGTTCTATGTGCCTGCGCCCGGGCGGGACTGCTGGAAGATGCAAATAACTACTTTGATGAGATGATCAATATATTCCTTGTGAGGCCAAATTTTGCACACTACTGGTGTTTGGCCAATGTTTATGTTGCAGCAGGGTTGATTCAGCAGGCTGTGGAAATACTTAGAAACATGCCTGAGGATATTGAGGACTTTTCATCAGAATTGGTTGTATGGACCAACTTGCTTGCGACATGTCGTTTCGGGGGAGATGTTTCTTTGGGAGAACAGATTGCAAACTATTTGATTGACATGGAGCCTAAGAATGAGTCATACTATAGATTGCTTCTGAATATTTATGCTGTAGCAGGGAGATGGGAGGATGTTTCAAGAATCAAAGTATTAATGAAAGAAAAACGACTCGGAACATTTCCGGGTTGTAGACTGGTAGACCTGAAAGAGATTGTTCACAGATTAAAATTGGGAAATCTTCTGCAAGAGGGGATGAAGGAGACAAACTCAGTGATGCACAAACTTGCTAGTGAAGTGAGTCTATTGTCAACTATTGCTGCAGGGCAATCGGATCTTAGAGTTTAG

Protein sequence

MCDSGGNYVEEEHEDEEFCVKVNQCHTANEWQEFTPDNSFASHAPPSLRPLNPLIDVLLHFALLQNQIFHSTPEILPDITDAIRFFNHASEFGDIVYTVLIFKLINVPNAFCINRVIKAYSLSSVPLEAVFVYFQWLGDGFRPDTYTFLSLFCACASIGCGSSGRKCHGQAFKNGVDCVMVLRNSLIHMYACCGHIELGRKVFDEMSTLDLVSWNSIVTAYARVGDLHTAHDMFDAMPERNVVSWNLMISEYLRGGSPGCAMKLFRNMMKIGIRGNSTTMVNILGACGRSARLNEGRSVHGFMYRTSMKFCVFIDTALVDMYGKCQRVSVARRLFDRMVNRNLVTWNAMVLGHCLHGNPEDGLKLFEEMAAKLRERNGEAGSGKKFKQDEGERKVFPDQITFIGVLCACARAGLLEDANNYFDEMINIFLVRPNFAHYWCLANVYVAAGLIQQAVEILRNMPEDIEDFSSELVVWTNLLATCRFGGDVSLGEQIANYLIDMEPKNESYYRLLLNIYAVAGRWEDVSRIKVLMKEKRLGTFPGCRLVDLKEIVHRLKLGNLLQEGMKETNSVMHKLASEVSLLSTIAAGQSDLRV

Homology

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BLAST of Cp4.1LG10g00040 vs. ExPASy Swiss-Prot
Match: Q0WVU0 (Pentatricopeptide repeat-containing protein At3g51320 OS=Arabidopsis thaliana OX=3702 GN=At3g51320 PE=2 SV=1)

HSP 1 Score: 502.7 bits (1293), Expect = 5.8e-141
Identity = 238/481 (49.48%), Postives = 325/481 (67.57%), Query Frame = 0


Query: 78  DITDAIRFFNHASEFGDIVYTVLIFKLINVPNAFCINRVIKAYSLSSVPLEAVFVYFQWL 137
           D + AIR    +S FGD  YTV I++  ++   +C N V KAY +SS P +A+  YF  L
Sbjct: 53  DSSWAIRLLKSSSRFGDSSYTVSIYR--SIGKLYCANPVFKAYLVSSSPKQALGFYFDIL 112

Query: 138 GDGFRPDTYTFLSLFCACASIGCGSSGRKCHGQAFKNGVDCVMVLRNSLIHMYACCGHIE 197
             GF PD+YTF+SL        C  SG+ CHGQA K+G D V+ ++NSL+HMY CCG ++
Sbjct: 113 RFGFVPDSYTFVSLISCIEKTCCVDSGKMCHGQAIKHGCDQVLPVQNSLMHMYTCCGALD 172

Query: 198 LGRKVFDEMSTLDLVSWNSIVTAYARVGDLHTAHDMFDAMPERNVVSWNLMISEYLRGGS 257
           L +K+F E+   D+VSWNSI+    R GD+  AH +FD MP++N++SWN+MIS YL   +
Sbjct: 173 LAKKLFVEIPKRDIVSWNSIIAGMVRNGDVLAAHKLFDEMPDKNIISWNIMISAYLGANN 232

Query: 258 PGCAMKLFRNMMKIGIRGNSTTMVNILGACGRSARLNEGRSVHGFMYRTSMKFCVFIDTA 317
           PG ++ LFR M++ G +GN +T+V +L ACGRSARL EGRSVH  + RT +   V IDTA
Sbjct: 233 PGVSISLFREMVRAGFQGNESTLVLLLNACGRSARLKEGRSVHASLIRTFLNSSVVIDTA 292

Query: 318 LVDMYGKCQRVSVARRLFDRMVNRNLVTWNAMVLGHCLHGNPEDGLKLFEEMAAKLRERN 377
           L+DMYGKC+ V +ARR+FD +  RN VTWN M+L HCLHG PE GL+LFE M       N
Sbjct: 293 LIDMYGKCKEVGLARRIFDSLSIRNKVTWNVMILAHCLHGRPEGGLELFEAMI------N 352

Query: 378 GEAGSGKKFKQDEGERKVFPDQITFIGVLCACARAGLLEDANNYFDEMINIFLVRPNFAH 437
           G                + PD++TF+GVLC CARAGL+    +Y+  M++ F ++PNF H
Sbjct: 353 G---------------MLRPDEVTFVGVLCGCARAGLVSQGQSYYSLMVDEFQIKPNFGH 412

Query: 438 YWCLANVYVAAGLIQQAVEILRNMPEDIEDFSSELVVWTNLLATCRFGGDVSLGEQIANY 497
            WC+AN+Y +AG  ++A E L+N+P+  ED + E   W NLL++ RF G+ +LGE IA  
Sbjct: 413 QWCMANLYSSAGFPEEAEEALKNLPD--EDVTPESTKWANLLSSSRFTGNPTLGESIAKS 472

Query: 498 LIDMEPKNESYYRLLLNIYAVAGRWEDVSRIKVLMKEKRLGTFPGCRLVDLKEIVHRLKL 557
           LI+ +P N  YY LL+NIY+V GRWEDV+R++ ++KE+++G  PGC LVDLKEIVH L+L
Sbjct: 473 LIETDPLNYKYYHLLMNIYSVTGRWEDVNRVREMVKERKIGRIPGCGLVDLKEIVHGLRL 508

Query: 558 G 559
           G
Sbjct: 533 G 508

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BLAST of Cp4.1LG10g00040 vs. ExPASy Swiss-Prot
Match: Q9SIL5 (Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E78 PE=2 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 2.0e-77
Identity = 155/485 (31.96%), Postives = 258/485 (53.20%), Query Frame = 0


Query: 94  DIVYTVLIFKLINVPNAFCINRVIKAYSLSSVPLEAVFVYFQWLGDGFR-PDTYTFLSLF 153
           D+ Y   +F  ++ PN F  N +I+AY+ +S+  + + +Y Q L   F  PD +TF  +F
Sbjct: 57  DMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMF 116

Query: 154 CACASIGCGSSGRKCHGQAFKNGVDCVMVLRNSLIHMYACCGHIELGRKVFDEMSTLDLV 213
            +CAS+G    G++ HG   K G    +V  N+LI MY     +    KVFDEM   D++
Sbjct: 117 KSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVI 176

Query: 214 SWNSIVTAYARVGDLHTAHDMFDAMPERNVVSWNLMISEYLRGGSPGCAMKLFRNMMKIG 273
           SWNS+++ YAR+G +  A  +F  M ++ +VSW  MIS Y   G    AM  FR M   G
Sbjct: 177 SWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAG 236

Query: 274 IRGNSTTMVNILGACGRSARLNEGRSVHGFMYRTSMKFCVFIDTALVDMYGKCQRVSVAR 333
           I  +  +++++L +C +   L  G+ +H +  R        +  AL++MY KC  +S A 
Sbjct: 237 IEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAI 296

Query: 334 RLFDRMVNRNLVTWNAMVLGHCLHGNPEDGLKLFEEMAAKLRERNGEAGSGKKFKQDEGE 393
           +LF +M  +++++W+ M+ G+  HGN    ++ F EM                       
Sbjct: 297 QLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQ---------------------R 356

Query: 394 RKVFPDQITFIGVLCACARAGLLEDANNYFDEMINIFLVRPNFAHYWCLANVYVAAGLIQ 453
            KV P+ ITF+G+L AC+  G+ ++   YFD M   + + P   HY CL +V   AG ++
Sbjct: 357 AKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLE 416

Query: 454 QAVEILRNMPEDIEDFSSELVVWTNLLATCRFGGDVSLGEQIANYLIDMEPKNESYYRLL 513
           +AVEI + MP        +  +W +LL++CR  G++ +     ++L+++EP++   Y LL
Sbjct: 417 RAVEITKTMP-----MKPDSKIWGSLLSSCRTPGNLDVALVAMDHLVELEPEDMGNYVLL 476

Query: 514 LNIYAVAGRWEDVSRIKVLMKEKRLGTFPGCRLVDLKEIVHRLKLGNLLQEGMKETNSVM 573
            NIYA  G+WEDVSR++ +++ + +   PG  L+++  IV     G+  +    E + V+
Sbjct: 477 ANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLIEVNNIVQEFVSGDNSKPFWTEISIVL 515

Query: 574 HKLAS 578
               S
Sbjct: 537 QLFTS 515

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BLAST of Cp4.1LG10g00040 vs. ExPASy Swiss-Prot
Match: Q9SZT8 (Pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ELI1 PE=3 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 1.0e-76
Identity = 163/523 (31.17%), Postives = 275/523 (52.58%), Query Frame = 0


Query: 59  LHFALLQ-NQIFHSTPEILPDITDAIRFFNHASEFGDIVYTVLIFKLINVPNAFCINRVI 118
           +H A+L+ N + H    +L      ++     +  G I +++ +F     P+ F     I
Sbjct: 48  IHAAILRHNLLLHPRYPVL-----NLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAI 107

Query: 119 KAYSLSSVPLEAVFVYFQWLGDGFRPDTYTFLSLFCACASIGCGSSGRKCHGQAFKNGVD 178
              S++ +  +A  +Y Q L     P+ +TF SL  +C++     SG+  H    K G+ 
Sbjct: 108 NTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCST----KSGKLIHTHVLKFGLG 167

Query: 179 CVMVLRNSLIHMYACCGHIELGRKVFDEMSTLDLVSWNSIVTAYARVGDLHTAHDMFDAM 238
               +   L+ +YA  G +   +KVFD M    LVS  +++T YA+ G++  A  +FD+M
Sbjct: 168 IDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSM 227

Query: 239 PERNVVSWNLMISEYLRGGSPGCAMKLFRNMMKIG-IRGNSTTMVNILGACGRSARLNEG 298
            ER++VSWN+MI  Y + G P  A+ LF+ ++  G  + +  T+V  L AC +   L  G
Sbjct: 228 CERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETG 287

Query: 299 RSVHGFMYRTSMKFCVFIDTALVDMYGKCQRVSVARRLFDRMVNRNLVTWNAMVLGHCLH 358
           R +H F+  + ++  V + T L+DMY KC  +  A  +F+    +++V WNAM+ G+ +H
Sbjct: 288 RWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMH 347

Query: 359 GNPEDGLKLFEEMAAKLRERNGEAGSGKKFKQDEGERKVFPDQITFIGVLCACARAGLLE 418
           G  +D L+LF EM                    +G   + P  ITFIG L ACA AGL+ 
Sbjct: 348 GYSQDALRLFNEM--------------------QGITGLQPTDITFIGTLQACAHAGLVN 407

Query: 419 DANNYFDEMINIFLVRPNFAHYWCLANVYVAAGLIQQAVEILRNMPEDIEDFSSELVVWT 478
           +    F+ M   + ++P   HY CL ++   AG +++A E ++NM  D     ++ V+W+
Sbjct: 408 EGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMD-----ADSVLWS 467

Query: 479 NLLATCRFGGDVSLGEQIANYLIDMEPKNESYYRLLLNIYAVAGRWEDVSRIKVLMKEKR 538
           ++L +C+  GD  LG++IA YLI +  KN   Y LL NIYA  G +E V++++ LMKEK 
Sbjct: 468 SVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKG 527

Query: 539 LGTFPGCRLVDLKEIVHRLKLGNLLQEGMKETNSVMHKLASEV 580
           +   PG   ++++  VH  + G+      KE  +++ K++  +
Sbjct: 528 IVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERI 536

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BLAST of Cp4.1LG10g00040 vs. ExPASy Swiss-Prot
Match: Q9FI80 (Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H38 PE=2 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 4.2e-75
Identity = 161/505 (31.88%), Postives = 266/505 (52.67%), Query Frame = 0


Query: 94  DIVYTVLIFKLINVPNAFCINRVIKAYSLS--SVPLEAVFVYFQWLGDGF-RPDTYTFLS 153
           D+ Y   IF  +   N F  N +I+ +S S     L A+ ++++ + D F  P+ +TF S
Sbjct: 74  DLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPS 133

Query: 154 LFCACASIGCGSSGRKCHGQAFKNGVDCVMVLRNSLIHMYACCGHIELGRKVF------D 213
           +  ACA  G    G++ HG A K G      + ++L+ MY  CG ++  R +F       
Sbjct: 134 VLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEK 193

Query: 214 EMSTL--------DLVSWNSIVTAYARVGDLHTAHDMFDAMPERNVVSWNLMISEYLRGG 273
           +M  +        ++V WN ++  Y R+GD   A  +FD M +R+VVSWN MIS Y   G
Sbjct: 194 DMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNG 253

Query: 274 SPGCAMKLFRNMMKIGIRGNSTTMVNILGACGRSARLNEGRSVHGFMYRTSMKFCVFIDT 333
               A+++FR M K  IR N  T+V++L A  R   L  G  +H +   + ++    + +
Sbjct: 254 FFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGS 313

Query: 334 ALVDMYGKCQRVSVARRLFDRMVNRNLVTWNAMVLGHCLHGNPEDGLKLFEEMAAKLRER 393
           AL+DMY KC  +  A  +F+R+   N++TW+AM+ G  +HG   D +  F     K+R  
Sbjct: 314 ALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCF----CKMR-- 373

Query: 394 NGEAGSGKKFKQDEGERKVFPDQITFIGVLCACARAGLLEDANNYFDEMINIFLVRPNFA 453
             +AG             V P  + +I +L AC+  GL+E+   YF +M+++  + P   
Sbjct: 374 --QAG-------------VRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIE 433

Query: 454 HYWCLANVYVAAGLIQQAVEILRNMPEDIEDFSSELVVWTNLLATCRFGGDVSLGEQIAN 513
           HY C+ ++   +GL+ +A E + NMP   +D     V+W  LL  CR  G+V +G+++AN
Sbjct: 434 HYGCMVDLLGRSGLLDEAEEFILNMPIKPDD-----VIWKALLGACRMQGNVEMGKRVAN 493

Query: 514 YLIDMEPKNESYYRLLLNIYAVAGRWEDVSRIKVLMKEKRLGTFPGCRLVDLKEIVHRLK 573
            L+DM P +   Y  L N+YA  G W +VS +++ MKEK +   PGC L+D+  ++H   
Sbjct: 494 ILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFV 552

Query: 574 LGNLLQEGMKETNSVMHKLASEVSL 582
           + +      KE NS++ +++ ++ L
Sbjct: 554 VEDDSHPKAKEINSMLVEISDKLRL 552

[Close]

BLAST of Cp4.1LG10g00040 vs. ExPASy Swiss-Prot
Match: Q9SJG6 (Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-E75 PE=2 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 1.0e-73
Identity = 159/501 (31.74%), Postives = 264/501 (52.69%), Query Frame = 0


Query: 94  DIVYTVLIFKLINVPNAFCINRVIKAYSLSSVPLEAVFVYFQWL--GDGFRPDTYTFLSL 153
           D+ Y  L+F  IN  N F  N +I+ +S SS P  A+ ++   L      +P   T+ S+
Sbjct: 73  DMNYAYLVFTRINHKNPFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSV 132

Query: 154 FCACASIGCGSSGRKCHGQAFKNGVDCVMVLRNSLIHMYACCGHIELGRKVFDEMSTLDL 213
           F A   +G    GR+ HG   K G++    +RN+++HMY  CG +    ++F  M   D+
Sbjct: 133 FKAYGRLGQARDGRQLHGMVIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDV 192

Query: 214 VSWNSIVTAYARVGDLHTAHDMFDAMPERNVVSWNLMISEYLRGGSPGCAMKLFRNMMKI 273
           V+WNS++  +A+ G +  A ++FD MP+RN VSWN MIS ++R G    A+ +FR M + 
Sbjct: 193 VAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEK 252

Query: 274 GIRGNSTTMVNILGACGRSARLNEGRSVHGFMYRTSMKFCVFIDTALVDMYGKCQRVSVA 333
            ++ +  TMV++L AC       +GR +H ++ R   +    + TAL+DMY KC  +   
Sbjct: 253 DVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEG 312

Query: 334 RRLFDRMVNRNLVTWNAMVLGHCLHGNPEDGLKLFEEMAAKLRERNGEAGSGKKFKQDEG 393
             +F+    + L  WN+M+LG   +G  E  + LF E+     ER+G             
Sbjct: 313 LNVFECAPKKQLSCWNSMILGLANNGFEERAMDLFSEL-----ERSG------------- 372

Query: 394 ERKVFPDQITFIGVLCACARAGLLEDANNYFDEMINIFLVRPNFAHYWCLANVYVAAGLI 453
              + PD ++FIGVL ACA +G +  A+ +F  M   +++ P+  HY  + NV   AGL+
Sbjct: 373 ---LEPDSVSFIGVLTACAHSGEVHRADEFFRLMKEKYMIEPSIKHYTLMVNVLGGAGLL 432

Query: 454 QQAVEILRNMPEDIEDFSSELVVWTNLLATCRFGGDVSLGEQIANYLIDMEPKNESYYRL 513
           ++A  +++NMP +      + V+W++LL+ CR  G+V + ++ A  L  ++P     Y L
Sbjct: 433 EEAEALIKNMPVE-----EDTVIWSSLLSACRKIGNVEMAKRAAKCLKKLDPDETCGYVL 492

Query: 514 LLNIYAVAGRWEDVSRIKVLMKEKRLGTFPGCRLVDLKEIVHRLKLGNLLQEGMKETNSV 573
           L N YA  G +E+    ++LMKE+++    GC  +++   VH             E  S+
Sbjct: 493 LSNAYASYGLFEEAVEQRLLMKERQMEKEVGCSSIEVDFEVHEFISCGGTHPKSAEIYSL 544

Query: 574 MHKLASEVSLLSTIAAGQSDL 593
           +  L  +V   STI +G ++L
Sbjct: 553 LDILNWDV---STIKSGFAEL 544

[Close]

BLAST of Cp4.1LG10g00040 vs. NCBI nr
Match: XP_023544621.1 (pentatricopeptide repeat-containing protein At3g51320 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1036 bits (2679), Expect = 0.0
Identity = 506/506 (100.00%), Postives = 506/506 (100.00%), Query Frame = 0


Query: 89  ASEFGDIVYTVLIFKLINVPNAFCINRVIKAYSLSSVPLEAVFVYFQWLGDGFRPDTYTF 148
           ASEFGDIVYTVLIFKLINVPNAFCINRVIKAYSLSSVPLEAVFVYFQWLGDGFRPDTYTF
Sbjct: 58  ASEFGDIVYTVLIFKLINVPNAFCINRVIKAYSLSSVPLEAVFVYFQWLGDGFRPDTYTF 117

Query: 149 LSLFCACASIGCGSSGRKCHGQAFKNGVDCVMVLRNSLIHMYACCGHIELGRKVFDEMST 208
           LSLFCACASIGCGSSGRKCHGQAFKNGVDCVMVLRNSLIHMYACCGHIELGRKVFDEMST
Sbjct: 118 LSLFCACASIGCGSSGRKCHGQAFKNGVDCVMVLRNSLIHMYACCGHIELGRKVFDEMST 177

Query: 209 LDLVSWNSIVTAYARVGDLHTAHDMFDAMPERNVVSWNLMISEYLRGGSPGCAMKLFRNM 268
           LDLVSWNSIVTAYARVGDLHTAHDMFDAMPERNVVSWNLMISEYLRGGSPGCAMKLFRNM
Sbjct: 178 LDLVSWNSIVTAYARVGDLHTAHDMFDAMPERNVVSWNLMISEYLRGGSPGCAMKLFRNM 237

Query: 269 MKIGIRGNSTTMVNILGACGRSARLNEGRSVHGFMYRTSMKFCVFIDTALVDMYGKCQRV 328
           MKIGIRGNSTTMVNILGACGRSARLNEGRSVHGFMYRTSMKFCVFIDTALVDMYGKCQRV
Sbjct: 238 MKIGIRGNSTTMVNILGACGRSARLNEGRSVHGFMYRTSMKFCVFIDTALVDMYGKCQRV 297

Query: 329 SVARRLFDRMVNRNLVTWNAMVLGHCLHGNPEDGLKLFEEMAAKLRERNGEAGSGKKFKQ 388
           SVARRLFDRMVNRNLVTWNAMVLGHCLHGNPEDGLKLFEEMAAKLRERNGEAGSGKKFKQ
Sbjct: 298 SVARRLFDRMVNRNLVTWNAMVLGHCLHGNPEDGLKLFEEMAAKLRERNGEAGSGKKFKQ 357

Query: 389 DEGERKVFPDQITFIGVLCACARAGLLEDANNYFDEMINIFLVRPNFAHYWCLANVYVAA 448
           DEGERKVFPDQITFIGVLCACARAGLLEDANNYFDEMINIFLVRPNFAHYWCLANVYVAA
Sbjct: 358 DEGERKVFPDQITFIGVLCACARAGLLEDANNYFDEMINIFLVRPNFAHYWCLANVYVAA 417

Query: 449 GLIQQAVEILRNMPEDIEDFSSELVVWTNLLATCRFGGDVSLGEQIANYLIDMEPKNESY 508
           GLIQQAVEILRNMPEDIEDFSSELVVWTNLLATCRFGGDVSLGEQIANYLIDMEPKNESY
Sbjct: 418 GLIQQAVEILRNMPEDIEDFSSELVVWTNLLATCRFGGDVSLGEQIANYLIDMEPKNESY 477

Query: 509 YRLLLNIYAVAGRWEDVSRIKVLMKEKRLGTFPGCRLVDLKEIVHRLKLGNLLQEGMKET 568
           YRLLLNIYAVAGRWEDVSRIKVLMKEKRLGTFPGCRLVDLKEIVHRLKLGNLLQEGMKET
Sbjct: 478 YRLLLNIYAVAGRWEDVSRIKVLMKEKRLGTFPGCRLVDLKEIVHRLKLGNLLQEGMKET 537

Query: 569 NSVMHKLASEVSLLSTIAAGQSDLRV 594
           NSVMHKLASEVSLLSTIAAGQSDLRV
Sbjct: 538 NSVMHKLASEVSLLSTIAAGQSDLRV 563

[Close]

BLAST of Cp4.1LG10g00040 vs. NCBI nr
Match: XP_023544620.1 (pentatricopeptide repeat-containing protein At3g51320 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1036 bits (2679), Expect = 0.0
Identity = 506/506 (100.00%), Postives = 506/506 (100.00%), Query Frame = 0


Query: 89  ASEFGDIVYTVLIFKLINVPNAFCINRVIKAYSLSSVPLEAVFVYFQWLGDGFRPDTYTF 148
           ASEFGDIVYTVLIFKLINVPNAFCINRVIKAYSLSSVPLEAVFVYFQWLGDGFRPDTYTF
Sbjct: 91  ASEFGDIVYTVLIFKLINVPNAFCINRVIKAYSLSSVPLEAVFVYFQWLGDGFRPDTYTF 150

Query: 149 LSLFCACASIGCGSSGRKCHGQAFKNGVDCVMVLRNSLIHMYACCGHIELGRKVFDEMST 208
           LSLFCACASIGCGSSGRKCHGQAFKNGVDCVMVLRNSLIHMYACCGHIELGRKVFDEMST
Sbjct: 151 LSLFCACASIGCGSSGRKCHGQAFKNGVDCVMVLRNSLIHMYACCGHIELGRKVFDEMST 210

Query: 209 LDLVSWNSIVTAYARVGDLHTAHDMFDAMPERNVVSWNLMISEYLRGGSPGCAMKLFRNM 268
           LDLVSWNSIVTAYARVGDLHTAHDMFDAMPERNVVSWNLMISEYLRGGSPGCAMKLFRNM
Sbjct: 211 LDLVSWNSIVTAYARVGDLHTAHDMFDAMPERNVVSWNLMISEYLRGGSPGCAMKLFRNM 270

Query: 269 MKIGIRGNSTTMVNILGACGRSARLNEGRSVHGFMYRTSMKFCVFIDTALVDMYGKCQRV 328
           MKIGIRGNSTTMVNILGACGRSARLNEGRSVHGFMYRTSMKFCVFIDTALVDMYGKCQRV
Sbjct: 271 MKIGIRGNSTTMVNILGACGRSARLNEGRSVHGFMYRTSMKFCVFIDTALVDMYGKCQRV 330

Query: 329 SVARRLFDRMVNRNLVTWNAMVLGHCLHGNPEDGLKLFEEMAAKLRERNGEAGSGKKFKQ 388
           SVARRLFDRMVNRNLVTWNAMVLGHCLHGNPEDGLKLFEEMAAKLRERNGEAGSGKKFKQ
Sbjct: 331 SVARRLFDRMVNRNLVTWNAMVLGHCLHGNPEDGLKLFEEMAAKLRERNGEAGSGKKFKQ 390

Query: 389 DEGERKVFPDQITFIGVLCACARAGLLEDANNYFDEMINIFLVRPNFAHYWCLANVYVAA 448
           DEGERKVFPDQITFIGVLCACARAGLLEDANNYFDEMINIFLVRPNFAHYWCLANVYVAA
Sbjct: 391 DEGERKVFPDQITFIGVLCACARAGLLEDANNYFDEMINIFLVRPNFAHYWCLANVYVAA 450

Query: 449 GLIQQAVEILRNMPEDIEDFSSELVVWTNLLATCRFGGDVSLGEQIANYLIDMEPKNESY 508
           GLIQQAVEILRNMPEDIEDFSSELVVWTNLLATCRFGGDVSLGEQIANYLIDMEPKNESY
Sbjct: 451 GLIQQAVEILRNMPEDIEDFSSELVVWTNLLATCRFGGDVSLGEQIANYLIDMEPKNESY 510

Query: 509 YRLLLNIYAVAGRWEDVSRIKVLMKEKRLGTFPGCRLVDLKEIVHRLKLGNLLQEGMKET 568
           YRLLLNIYAVAGRWEDVSRIKVLMKEKRLGTFPGCRLVDLKEIVHRLKLGNLLQEGMKET
Sbjct: 511 YRLLLNIYAVAGRWEDVSRIKVLMKEKRLGTFPGCRLVDLKEIVHRLKLGNLLQEGMKET 570

Query: 569 NSVMHKLASEVSLLSTIAAGQSDLRV 594
           NSVMHKLASEVSLLSTIAAGQSDLRV
Sbjct: 571 NSVMHKLASEVSLLSTIAAGQSDLRV 596

[Close]

BLAST of Cp4.1LG10g00040 vs. NCBI nr
Match: XP_022950691.1 (pentatricopeptide repeat-containing protein At3g51320 isoform X2 [Cucurbita moschata])

HSP 1 Score: 1024 bits (2648), Expect = 0.0
Identity = 500/506 (98.81%), Postives = 502/506 (99.21%), Query Frame = 0


Query: 89  ASEFGDIVYTVLIFKLINVPNAFCINRVIKAYSLSSVPLEAVFVYFQWLGDGFRPDTYTF 148
           ASEFGDIVYTVLIFKLINVPNAFCINRVIKAYSLSS PLEAVFVYFQWLGDGFRPDTYTF
Sbjct: 58  ASEFGDIVYTVLIFKLINVPNAFCINRVIKAYSLSSDPLEAVFVYFQWLGDGFRPDTYTF 117

Query: 149 LSLFCACASIGCGSSGRKCHGQAFKNGVDCVMVLRNSLIHMYACCGHIELGRKVFDEMST 208
           LSLFCACASIGCGSSGRKCHGQAFKNGVDCVMVLRNSLIHMY CCGHIELGRKVFDEM T
Sbjct: 118 LSLFCACASIGCGSSGRKCHGQAFKNGVDCVMVLRNSLIHMYGCCGHIELGRKVFDEMLT 177

Query: 209 LDLVSWNSIVTAYARVGDLHTAHDMFDAMPERNVVSWNLMISEYLRGGSPGCAMKLFRNM 268
           LDLVSWNSIVTAYARVGDLHTAHDMFDAMPERNVVSWNLMISEYLRGGSPGCAMKLFRNM
Sbjct: 178 LDLVSWNSIVTAYARVGDLHTAHDMFDAMPERNVVSWNLMISEYLRGGSPGCAMKLFRNM 237

Query: 269 MKIGIRGNSTTMVNILGACGRSARLNEGRSVHGFMYRTSMKFCVFIDTALVDMYGKCQRV 328
           MKIGIRGNSTTMVNILGACGRSARLNEGRSVHGFMYRTSMKFCVFIDTALVDMYGKCQRV
Sbjct: 238 MKIGIRGNSTTMVNILGACGRSARLNEGRSVHGFMYRTSMKFCVFIDTALVDMYGKCQRV 297

Query: 329 SVARRLFDRMVNRNLVTWNAMVLGHCLHGNPEDGLKLFEEMAAKLRERNGEAGSGKKFKQ 388
           SVARRLFDRMVNRNLVTWNAMVLGHCLHGNPEDGLKLFEEMAAKLRERNGEAGSGKKFKQ
Sbjct: 298 SVARRLFDRMVNRNLVTWNAMVLGHCLHGNPEDGLKLFEEMAAKLRERNGEAGSGKKFKQ 357

Query: 389 DEGERKVFPDQITFIGVLCACARAGLLEDANNYFDEMINIFLVRPNFAHYWCLANVYVAA 448
           DEGERKVF DQITFIGVLCACARAGLLEDANNYFDEMIN+FLVRPNFAHYWCLANVYVAA
Sbjct: 358 DEGERKVFLDQITFIGVLCACARAGLLEDANNYFDEMINVFLVRPNFAHYWCLANVYVAA 417

Query: 449 GLIQQAVEILRNMPEDIEDFSSELVVWTNLLATCRFGGDVSLGEQIANYLIDMEPKNESY 508
           GLIQQAVEILRNMPEDIEDFSSELVVWTNLLATCRFGGDVSLGEQIANYLIDMEPKNESY
Sbjct: 418 GLIQQAVEILRNMPEDIEDFSSELVVWTNLLATCRFGGDVSLGEQIANYLIDMEPKNESY 477

Query: 509 YRLLLNIYAVAGRWEDVSRIKVLMKEKRLGTFPGCRLVDLKEIVHRLKLGNLLQEGMKET 568
           YRLLLNIYAVAGRWEDVSRIKVLMKEKRLGTFPGCRLVDLKEIVHRLKLGNLLQEGMKET
Sbjct: 478 YRLLLNIYAVAGRWEDVSRIKVLMKEKRLGTFPGCRLVDLKEIVHRLKLGNLLQEGMKET 537

Query: 569 NSVMHKLASEVSLLSTIAAGQSDLRV 594
           N+VMHKLASEVSLLSTIAAGQSDLRV
Sbjct: 538 NTVMHKLASEVSLLSTIAAGQSDLRV 563

[Close]

BLAST of Cp4.1LG10g00040 vs. NCBI nr
Match: XP_022950690.1 (pentatricopeptide repeat-containing protein At3g51320 isoform X1 [Cucurbita moschata])

HSP 1 Score: 1024 bits (2648), Expect = 0.0
Identity = 500/506 (98.81%), Postives = 502/506 (99.21%), Query Frame = 0


Query: 89  ASEFGDIVYTVLIFKLINVPNAFCINRVIKAYSLSSVPLEAVFVYFQWLGDGFRPDTYTF 148
           ASEFGDIVYTVLIFKLINVPNAFCINRVIKAYSLSS PLEAVFVYFQWLGDGFRPDTYTF
Sbjct: 91  ASEFGDIVYTVLIFKLINVPNAFCINRVIKAYSLSSDPLEAVFVYFQWLGDGFRPDTYTF 150

Query: 149 LSLFCACASIGCGSSGRKCHGQAFKNGVDCVMVLRNSLIHMYACCGHIELGRKVFDEMST 208
           LSLFCACASIGCGSSGRKCHGQAFKNGVDCVMVLRNSLIHMY CCGHIELGRKVFDEM T
Sbjct: 151 LSLFCACASIGCGSSGRKCHGQAFKNGVDCVMVLRNSLIHMYGCCGHIELGRKVFDEMLT 210

Query: 209 LDLVSWNSIVTAYARVGDLHTAHDMFDAMPERNVVSWNLMISEYLRGGSPGCAMKLFRNM 268
           LDLVSWNSIVTAYARVGDLHTAHDMFDAMPERNVVSWNLMISEYLRGGSPGCAMKLFRNM
Sbjct: 211 LDLVSWNSIVTAYARVGDLHTAHDMFDAMPERNVVSWNLMISEYLRGGSPGCAMKLFRNM 270

Query: 269 MKIGIRGNSTTMVNILGACGRSARLNEGRSVHGFMYRTSMKFCVFIDTALVDMYGKCQRV 328
           MKIGIRGNSTTMVNILGACGRSARLNEGRSVHGFMYRTSMKFCVFIDTALVDMYGKCQRV
Sbjct: 271 MKIGIRGNSTTMVNILGACGRSARLNEGRSVHGFMYRTSMKFCVFIDTALVDMYGKCQRV 330

Query: 329 SVARRLFDRMVNRNLVTWNAMVLGHCLHGNPEDGLKLFEEMAAKLRERNGEAGSGKKFKQ 388
           SVARRLFDRMVNRNLVTWNAMVLGHCLHGNPEDGLKLFEEMAAKLRERNGEAGSGKKFKQ
Sbjct: 331 SVARRLFDRMVNRNLVTWNAMVLGHCLHGNPEDGLKLFEEMAAKLRERNGEAGSGKKFKQ 390

Query: 389 DEGERKVFPDQITFIGVLCACARAGLLEDANNYFDEMINIFLVRPNFAHYWCLANVYVAA 448
           DEGERKVF DQITFIGVLCACARAGLLEDANNYFDEMIN+FLVRPNFAHYWCLANVYVAA
Sbjct: 391 DEGERKVFLDQITFIGVLCACARAGLLEDANNYFDEMINVFLVRPNFAHYWCLANVYVAA 450

Query: 449 GLIQQAVEILRNMPEDIEDFSSELVVWTNLLATCRFGGDVSLGEQIANYLIDMEPKNESY 508
           GLIQQAVEILRNMPEDIEDFSSELVVWTNLLATCRFGGDVSLGEQIANYLIDMEPKNESY
Sbjct: 451 GLIQQAVEILRNMPEDIEDFSSELVVWTNLLATCRFGGDVSLGEQIANYLIDMEPKNESY 510

Query: 509 YRLLLNIYAVAGRWEDVSRIKVLMKEKRLGTFPGCRLVDLKEIVHRLKLGNLLQEGMKET 568
           YRLLLNIYAVAGRWEDVSRIKVLMKEKRLGTFPGCRLVDLKEIVHRLKLGNLLQEGMKET
Sbjct: 511 YRLLLNIYAVAGRWEDVSRIKVLMKEKRLGTFPGCRLVDLKEIVHRLKLGNLLQEGMKET 570

Query: 569 NSVMHKLASEVSLLSTIAAGQSDLRV 594
           N+VMHKLASEVSLLSTIAAGQSDLRV
Sbjct: 571 NTVMHKLASEVSLLSTIAAGQSDLRV 596

[Close]

BLAST of Cp4.1LG10g00040 vs. NCBI nr
Match: KAG7034075.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 1016 bits (2628), Expect = 0.0
Identity = 497/506 (98.22%), Postives = 499/506 (98.62%), Query Frame = 0


Query: 89  ASEFGDIVYTVLIFKLINVPNAFCINRVIKAYSLSSVPLEAVFVYFQWLGDGFRPDTYTF 148
           ASEFGDIVYTVLIFKLI VPNAFCINRVIKAYSLSS PLEAVFVYFQWLG GFRPDTYTF
Sbjct: 30  ASEFGDIVYTVLIFKLIKVPNAFCINRVIKAYSLSSDPLEAVFVYFQWLGAGFRPDTYTF 89

Query: 149 LSLFCACASIGCGSSGRKCHGQAFKNGVDCVMVLRNSLIHMYACCGHIELGRKVFDEMST 208
           LSLFCACAS GCGSSGRKCHGQAFKNGVDCVMVLRNSLIHMY CCGHIELGRKVFDEMST
Sbjct: 90  LSLFCACASFGCGSSGRKCHGQAFKNGVDCVMVLRNSLIHMYGCCGHIELGRKVFDEMST 149

Query: 209 LDLVSWNSIVTAYARVGDLHTAHDMFDAMPERNVVSWNLMISEYLRGGSPGCAMKLFRNM 268
           LDLVSWNSIVTAYARVGDL TAHDMFDAMPERNVVSWNLMISEYLRGGSPGCAMKLFRNM
Sbjct: 150 LDLVSWNSIVTAYARVGDLQTAHDMFDAMPERNVVSWNLMISEYLRGGSPGCAMKLFRNM 209

Query: 269 MKIGIRGNSTTMVNILGACGRSARLNEGRSVHGFMYRTSMKFCVFIDTALVDMYGKCQRV 328
           MKIGIRGNSTTMVNILGACGRSARLNEGRSVHGFMYRTSMKFCVFIDTALVDMYGKCQRV
Sbjct: 210 MKIGIRGNSTTMVNILGACGRSARLNEGRSVHGFMYRTSMKFCVFIDTALVDMYGKCQRV 269

Query: 329 SVARRLFDRMVNRNLVTWNAMVLGHCLHGNPEDGLKLFEEMAAKLRERNGEAGSGKKFKQ 388
           SVARRLFDRMVNRNLVTWNAMVLGHCLHGNPEDGLKLFEEMAAKLRERNGEAGSGKKFKQ
Sbjct: 270 SVARRLFDRMVNRNLVTWNAMVLGHCLHGNPEDGLKLFEEMAAKLRERNGEAGSGKKFKQ 329

Query: 389 DEGERKVFPDQITFIGVLCACARAGLLEDANNYFDEMINIFLVRPNFAHYWCLANVYVAA 448
           DEGERKVF DQITFIGVLCACARAGLLEDANNYFDEMIN+FLVRPNFAHYWCLANVYVAA
Sbjct: 330 DEGERKVFLDQITFIGVLCACARAGLLEDANNYFDEMINVFLVRPNFAHYWCLANVYVAA 389

Query: 449 GLIQQAVEILRNMPEDIEDFSSELVVWTNLLATCRFGGDVSLGEQIANYLIDMEPKNESY 508
           GLIQQAVEILRNMPEDIEDFSSELVVWTNLLATCRFGGDVSLGEQIANYLIDMEPKNESY
Sbjct: 390 GLIQQAVEILRNMPEDIEDFSSELVVWTNLLATCRFGGDVSLGEQIANYLIDMEPKNESY 449

Query: 509 YRLLLNIYAVAGRWEDVSRIKVLMKEKRLGTFPGCRLVDLKEIVHRLKLGNLLQEGMKET 568
           YRLLLNIYAVAGRWEDVSRIKVLMKEKRLGTFPGCRLVDLKEIVHRLKLGNLLQEGMKET
Sbjct: 450 YRLLLNIYAVAGRWEDVSRIKVLMKEKRLGTFPGCRLVDLKEIVHRLKLGNLLQEGMKET 509

Query: 569 NSVMHKLASEVSLLSTIAAGQSDLRV 594
           N+VMHKLASEVSLLSTIAAGQSDLRV
Sbjct: 510 NTVMHKLASEVSLLSTIAAGQSDLRV 535

[Close]

BLAST of Cp4.1LG10g00040 vs. ExPASy TrEMBL
Match: A0A6J1GFI6 (pentatricopeptide repeat-containing protein At3g51320 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111453712 PE=4 SV=1)

HSP 1 Score: 1024 bits (2648), Expect = 0.0
Identity = 500/506 (98.81%), Postives = 502/506 (99.21%), Query Frame = 0


Query: 89  ASEFGDIVYTVLIFKLINVPNAFCINRVIKAYSLSSVPLEAVFVYFQWLGDGFRPDTYTF 148
           ASEFGDIVYTVLIFKLINVPNAFCINRVIKAYSLSS PLEAVFVYFQWLGDGFRPDTYTF
Sbjct: 58  ASEFGDIVYTVLIFKLINVPNAFCINRVIKAYSLSSDPLEAVFVYFQWLGDGFRPDTYTF 117

Query: 149 LSLFCACASIGCGSSGRKCHGQAFKNGVDCVMVLRNSLIHMYACCGHIELGRKVFDEMST 208
           LSLFCACASIGCGSSGRKCHGQAFKNGVDCVMVLRNSLIHMY CCGHIELGRKVFDEM T
Sbjct: 118 LSLFCACASIGCGSSGRKCHGQAFKNGVDCVMVLRNSLIHMYGCCGHIELGRKVFDEMLT 177

Query: 209 LDLVSWNSIVTAYARVGDLHTAHDMFDAMPERNVVSWNLMISEYLRGGSPGCAMKLFRNM 268
           LDLVSWNSIVTAYARVGDLHTAHDMFDAMPERNVVSWNLMISEYLRGGSPGCAMKLFRNM
Sbjct: 178 LDLVSWNSIVTAYARVGDLHTAHDMFDAMPERNVVSWNLMISEYLRGGSPGCAMKLFRNM 237

Query: 269 MKIGIRGNSTTMVNILGACGRSARLNEGRSVHGFMYRTSMKFCVFIDTALVDMYGKCQRV 328
           MKIGIRGNSTTMVNILGACGRSARLNEGRSVHGFMYRTSMKFCVFIDTALVDMYGKCQRV
Sbjct: 238 MKIGIRGNSTTMVNILGACGRSARLNEGRSVHGFMYRTSMKFCVFIDTALVDMYGKCQRV 297

Query: 329 SVARRLFDRMVNRNLVTWNAMVLGHCLHGNPEDGLKLFEEMAAKLRERNGEAGSGKKFKQ 388
           SVARRLFDRMVNRNLVTWNAMVLGHCLHGNPEDGLKLFEEMAAKLRERNGEAGSGKKFKQ
Sbjct: 298 SVARRLFDRMVNRNLVTWNAMVLGHCLHGNPEDGLKLFEEMAAKLRERNGEAGSGKKFKQ 357

Query: 389 DEGERKVFPDQITFIGVLCACARAGLLEDANNYFDEMINIFLVRPNFAHYWCLANVYVAA 448
           DEGERKVF DQITFIGVLCACARAGLLEDANNYFDEMIN+FLVRPNFAHYWCLANVYVAA
Sbjct: 358 DEGERKVFLDQITFIGVLCACARAGLLEDANNYFDEMINVFLVRPNFAHYWCLANVYVAA 417

Query: 449 GLIQQAVEILRNMPEDIEDFSSELVVWTNLLATCRFGGDVSLGEQIANYLIDMEPKNESY 508
           GLIQQAVEILRNMPEDIEDFSSELVVWTNLLATCRFGGDVSLGEQIANYLIDMEPKNESY
Sbjct: 418 GLIQQAVEILRNMPEDIEDFSSELVVWTNLLATCRFGGDVSLGEQIANYLIDMEPKNESY 477

Query: 509 YRLLLNIYAVAGRWEDVSRIKVLMKEKRLGTFPGCRLVDLKEIVHRLKLGNLLQEGMKET 568
           YRLLLNIYAVAGRWEDVSRIKVLMKEKRLGTFPGCRLVDLKEIVHRLKLGNLLQEGMKET
Sbjct: 478 YRLLLNIYAVAGRWEDVSRIKVLMKEKRLGTFPGCRLVDLKEIVHRLKLGNLLQEGMKET 537

Query: 569 NSVMHKLASEVSLLSTIAAGQSDLRV 594
           N+VMHKLASEVSLLSTIAAGQSDLRV
Sbjct: 538 NTVMHKLASEVSLLSTIAAGQSDLRV 563

[Close]

BLAST of Cp4.1LG10g00040 vs. ExPASy TrEMBL
Match: A0A6J1GGG4 (pentatricopeptide repeat-containing protein At3g51320 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111453712 PE=4 SV=1)

HSP 1 Score: 1024 bits (2648), Expect = 0.0
Identity = 500/506 (98.81%), Postives = 502/506 (99.21%), Query Frame = 0


Query: 89  ASEFGDIVYTVLIFKLINVPNAFCINRVIKAYSLSSVPLEAVFVYFQWLGDGFRPDTYTF 148
           ASEFGDIVYTVLIFKLINVPNAFCINRVIKAYSLSS PLEAVFVYFQWLGDGFRPDTYTF
Sbjct: 91  ASEFGDIVYTVLIFKLINVPNAFCINRVIKAYSLSSDPLEAVFVYFQWLGDGFRPDTYTF 150

Query: 149 LSLFCACASIGCGSSGRKCHGQAFKNGVDCVMVLRNSLIHMYACCGHIELGRKVFDEMST 208
           LSLFCACASIGCGSSGRKCHGQAFKNGVDCVMVLRNSLIHMY CCGHIELGRKVFDEM T
Sbjct: 151 LSLFCACASIGCGSSGRKCHGQAFKNGVDCVMVLRNSLIHMYGCCGHIELGRKVFDEMLT 210

Query: 209 LDLVSWNSIVTAYARVGDLHTAHDMFDAMPERNVVSWNLMISEYLRGGSPGCAMKLFRNM 268
           LDLVSWNSIVTAYARVGDLHTAHDMFDAMPERNVVSWNLMISEYLRGGSPGCAMKLFRNM
Sbjct: 211 LDLVSWNSIVTAYARVGDLHTAHDMFDAMPERNVVSWNLMISEYLRGGSPGCAMKLFRNM 270

Query: 269 MKIGIRGNSTTMVNILGACGRSARLNEGRSVHGFMYRTSMKFCVFIDTALVDMYGKCQRV 328
           MKIGIRGNSTTMVNILGACGRSARLNEGRSVHGFMYRTSMKFCVFIDTALVDMYGKCQRV
Sbjct: 271 MKIGIRGNSTTMVNILGACGRSARLNEGRSVHGFMYRTSMKFCVFIDTALVDMYGKCQRV 330

Query: 329 SVARRLFDRMVNRNLVTWNAMVLGHCLHGNPEDGLKLFEEMAAKLRERNGEAGSGKKFKQ 388
           SVARRLFDRMVNRNLVTWNAMVLGHCLHGNPEDGLKLFEEMAAKLRERNGEAGSGKKFKQ
Sbjct: 331 SVARRLFDRMVNRNLVTWNAMVLGHCLHGNPEDGLKLFEEMAAKLRERNGEAGSGKKFKQ 390

Query: 389 DEGERKVFPDQITFIGVLCACARAGLLEDANNYFDEMINIFLVRPNFAHYWCLANVYVAA 448
           DEGERKVF DQITFIGVLCACARAGLLEDANNYFDEMIN+FLVRPNFAHYWCLANVYVAA
Sbjct: 391 DEGERKVFLDQITFIGVLCACARAGLLEDANNYFDEMINVFLVRPNFAHYWCLANVYVAA 450

Query: 449 GLIQQAVEILRNMPEDIEDFSSELVVWTNLLATCRFGGDVSLGEQIANYLIDMEPKNESY 508
           GLIQQAVEILRNMPEDIEDFSSELVVWTNLLATCRFGGDVSLGEQIANYLIDMEPKNESY
Sbjct: 451 GLIQQAVEILRNMPEDIEDFSSELVVWTNLLATCRFGGDVSLGEQIANYLIDMEPKNESY 510

Query: 509 YRLLLNIYAVAGRWEDVSRIKVLMKEKRLGTFPGCRLVDLKEIVHRLKLGNLLQEGMKET 568
           YRLLLNIYAVAGRWEDVSRIKVLMKEKRLGTFPGCRLVDLKEIVHRLKLGNLLQEGMKET
Sbjct: 511 YRLLLNIYAVAGRWEDVSRIKVLMKEKRLGTFPGCRLVDLKEIVHRLKLGNLLQEGMKET 570

Query: 569 NSVMHKLASEVSLLSTIAAGQSDLRV 594
           N+VMHKLASEVSLLSTIAAGQSDLRV
Sbjct: 571 NTVMHKLASEVSLLSTIAAGQSDLRV 596

[Close]

BLAST of Cp4.1LG10g00040 vs. ExPASy TrEMBL
Match: A0A6J1ITV7 (pentatricopeptide repeat-containing protein At3g51320 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111478374 PE=4 SV=1)

HSP 1 Score: 994 bits (2571), Expect = 0.0
Identity = 501/566 (88.52%), Postives = 512/566 (90.46%), Query Frame = 0


Query: 40  FASHAPP--SLRPLNPLIDVLLHFALLQNQIFHSTPEILPDITDAIRFFNH--------- 99
           F S A P  SL  +NP      H  L   Q      +I   +  +  F +H         
Sbjct: 31  FCSFAEPDLSLDTINPPRHNRCHSLLQSCQSIRELVQIHGHLITSGLFNHHFWANRVLLQ 90

Query: 100 ASEFGDIVYTVLIFKLINVPNAFCINRVIKAYSLSSVPLEAVFVYFQWLGDGFRPDTYTF 159
           ASEFGDIVYTVLIFKLINVPNAFCINRVIKAYSLSS PLEAVFVYFQWLGDGFRPDTYTF
Sbjct: 91  ASEFGDIVYTVLIFKLINVPNAFCINRVIKAYSLSSDPLEAVFVYFQWLGDGFRPDTYTF 150

Query: 160 LSLFCACASIGCGSSGRKCHGQAFKNGVDCVMVLRNSLIHMYACCGHIELGRKVFDEMST 219
           LSLFCACASIGCGSSGRKCHGQAFKNGVDCVMVLRNSLIHMY CCG+IELGRKVFDEMST
Sbjct: 151 LSLFCACASIGCGSSGRKCHGQAFKNGVDCVMVLRNSLIHMYGCCGYIELGRKVFDEMST 210

Query: 220 LDLVSWNSIVTAYARVGDLHTAHDMFDAMPERNVVSWNLMISEYLRGGSPGCAMKLFRNM 279
           LDLVSWNSIVTAYARVGDLHTAHDMFDAMPERNVVSWNLMISEYLRGGSPGCAMKLFRNM
Sbjct: 211 LDLVSWNSIVTAYARVGDLHTAHDMFDAMPERNVVSWNLMISEYLRGGSPGCAMKLFRNM 270

Query: 280 MKIGIRGNSTTMVNILGACGRSARLNEGRSVHGFMYRTSMKFCVFIDTALVDMYGKCQRV 339
           MKIGIRGNSTTMVNILGACGRSA LNEGRSVHGFMYRTS KFCVFI TALVDMYGKCQRV
Sbjct: 271 MKIGIRGNSTTMVNILGACGRSASLNEGRSVHGFMYRTSTKFCVFIGTALVDMYGKCQRV 330

Query: 340 SVARRLFDRMVNRNLVTWNAMVLGHCLHGNPEDGLKLFEEMAAKLRERNGEAGSGKKFKQ 399
            +ARRLFDRM NRNLVTWNAMVLGHCLHGNPEDGLKL+EEMAAKLRERNGEAGSGKKFKQ
Sbjct: 331 CIARRLFDRMPNRNLVTWNAMVLGHCLHGNPEDGLKLYEEMAAKLRERNGEAGSGKKFKQ 390

Query: 400 DEGERKVFPDQITFIGVLCACARAGLLEDANNYFDEMINIFLVRPNFAHYWCLANVYVAA 459
           DEGERKVFPDQITFIGVLCACARAGLLEDANNYFDEMIN+FLV+PNFAHYWCLANVYVAA
Sbjct: 391 DEGERKVFPDQITFIGVLCACARAGLLEDANNYFDEMINVFLVKPNFAHYWCLANVYVAA 450

Query: 460 GLIQQAVEILRNMPEDIEDFSSELVVWTNLLATCRFGGDVSLGEQIANYLIDMEPKNESY 519
           GLIQQAVEILRNM EDIEDFSSELVVWTNLLATCRF GDVSLGEQIANYLIDMEPKNESY
Sbjct: 451 GLIQQAVEILRNMTEDIEDFSSELVVWTNLLATCRFRGDVSLGEQIANYLIDMEPKNESY 510

Query: 520 YRLLLNIYAVAGRWEDVSRIKVLMKEKRLGTFPGCRLVDLKEIVHRLKLGNLLQEGMKET 579
           YRLLLNIYAVAGRWEDVSRIKVLMKEKRLGTFPGCRLVDLKEIVHRLKLGNLLQE    T
Sbjct: 511 YRLLLNIYAVAGRWEDVSRIKVLMKEKRLGTFPGCRLVDLKEIVHRLKLGNLLQE----T 570

Query: 580 NSVMHKLASEVSLLSTIAAGQSDLRV 594
           N+VMHKLASEVSLLSTIAAGQSDLRV
Sbjct: 571 NTVMHKLASEVSLLSTIAAGQSDLRV 592

[Close]

BLAST of Cp4.1LG10g00040 vs. ExPASy TrEMBL
Match: A0A6J1IPV8 (pentatricopeptide repeat-containing protein At3g51320 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111478374 PE=4 SV=1)

HSP 1 Score: 993 bits (2568), Expect = 0.0
Identity = 487/506 (96.25%), Postives = 493/506 (97.43%), Query Frame = 0


Query: 89  ASEFGDIVYTVLIFKLINVPNAFCINRVIKAYSLSSVPLEAVFVYFQWLGDGFRPDTYTF 148
           ASEFGDIVYTVLIFKLINVPNAFCINRVIKAYSLSS PLEAVFVYFQWLGDGFRPDTYTF
Sbjct: 58  ASEFGDIVYTVLIFKLINVPNAFCINRVIKAYSLSSDPLEAVFVYFQWLGDGFRPDTYTF 117

Query: 149 LSLFCACASIGCGSSGRKCHGQAFKNGVDCVMVLRNSLIHMYACCGHIELGRKVFDEMST 208
           LSLFCACASIGCGSSGRKCHGQAFKNGVDCVMVLRNSLIHMY CCG+IELGRKVFDEMST
Sbjct: 118 LSLFCACASIGCGSSGRKCHGQAFKNGVDCVMVLRNSLIHMYGCCGYIELGRKVFDEMST 177

Query: 209 LDLVSWNSIVTAYARVGDLHTAHDMFDAMPERNVVSWNLMISEYLRGGSPGCAMKLFRNM 268
           LDLVSWNSIVTAYARVGDLHTAHDMFDAMPERNVVSWNLMISEYLRGGSPGCAMKLFRNM
Sbjct: 178 LDLVSWNSIVTAYARVGDLHTAHDMFDAMPERNVVSWNLMISEYLRGGSPGCAMKLFRNM 237

Query: 269 MKIGIRGNSTTMVNILGACGRSARLNEGRSVHGFMYRTSMKFCVFIDTALVDMYGKCQRV 328
           MKIGIRGNSTTMVNILGACGRSA LNEGRSVHGFMYRTS KFCVFI TALVDMYGKCQRV
Sbjct: 238 MKIGIRGNSTTMVNILGACGRSASLNEGRSVHGFMYRTSTKFCVFIGTALVDMYGKCQRV 297

Query: 329 SVARRLFDRMVNRNLVTWNAMVLGHCLHGNPEDGLKLFEEMAAKLRERNGEAGSGKKFKQ 388
            +ARRLFDRM NRNLVTWNAMVLGHCLHGNPEDGLKL+EEMAAKLRERNGEAGSGKKFKQ
Sbjct: 298 CIARRLFDRMPNRNLVTWNAMVLGHCLHGNPEDGLKLYEEMAAKLRERNGEAGSGKKFKQ 357

Query: 389 DEGERKVFPDQITFIGVLCACARAGLLEDANNYFDEMINIFLVRPNFAHYWCLANVYVAA 448
           DEGERKVFPDQITFIGVLCACARAGLLEDANNYFDEMIN+FLV+PNFAHYWCLANVYVAA
Sbjct: 358 DEGERKVFPDQITFIGVLCACARAGLLEDANNYFDEMINVFLVKPNFAHYWCLANVYVAA 417

Query: 449 GLIQQAVEILRNMPEDIEDFSSELVVWTNLLATCRFGGDVSLGEQIANYLIDMEPKNESY 508
           GLIQQAVEILRNM EDIEDFSSELVVWTNLLATCRF GDVSLGEQIANYLIDMEPKNESY
Sbjct: 418 GLIQQAVEILRNMTEDIEDFSSELVVWTNLLATCRFRGDVSLGEQIANYLIDMEPKNESY 477

Query: 509 YRLLLNIYAVAGRWEDVSRIKVLMKEKRLGTFPGCRLVDLKEIVHRLKLGNLLQEGMKET 568
           YRLLLNIYAVAGRWEDVSRIKVLMKEKRLGTFPGCRLVDLKEIVHRLKLGNLLQE    T
Sbjct: 478 YRLLLNIYAVAGRWEDVSRIKVLMKEKRLGTFPGCRLVDLKEIVHRLKLGNLLQE----T 537

Query: 569 NSVMHKLASEVSLLSTIAAGQSDLRV 594
           N+VMHKLASEVSLLSTIAAGQSDLRV
Sbjct: 538 NTVMHKLASEVSLLSTIAAGQSDLRV 559

[Close]

BLAST of Cp4.1LG10g00040 vs. ExPASy TrEMBL
Match: A0A6J1BTT2 (pentatricopeptide repeat-containing protein At3g51320 OS=Momordica charantia OX=3673 GN=LOC111005621 PE=4 SV=1)

HSP 1 Score: 904 bits (2335), Expect = 0.0
Identity = 427/506 (84.39%), Postives = 468/506 (92.49%), Query Frame = 0


Query: 89  ASEFGDIVYTVLIFKLINVPNAFCINRVIKAYSLSSVPLEAVFVYFQWLGDGFRPDTYTF 148
           ASEFGDIVYT+LIF+ I +PN FCINRV+KAYSLS+VP EAVF+YF+WLG+GFRPDTYTF
Sbjct: 86  ASEFGDIVYTILIFRRIKIPNTFCINRVLKAYSLSTVPQEAVFLYFEWLGNGFRPDTYTF 145

Query: 149 LSLFCACASIGCGSSGRKCHGQAFKNGVDCVMVLRNSLIHMYACCGHIELGRKVFDEMST 208
           LSLFCACAS+GCG+SGRKCHGQAFKNGVDCVMVLRNSLIHMY CCG IELGRKVFDEMS 
Sbjct: 146 LSLFCACASVGCGASGRKCHGQAFKNGVDCVMVLRNSLIHMYGCCGDIELGRKVFDEMSA 205

Query: 209 LDLVSWNSIVTAYARVGDLHTAHDMFDAMPERNVVSWNLMISEYLRGGSPGCAMKLFRNM 268
            DLVSWNSIVTAYAR+GDLHTAHD+FD MPERNVVSWNLMI EYLRGG+PGCAMKLFR M
Sbjct: 206 RDLVSWNSIVTAYARIGDLHTAHDLFDEMPERNVVSWNLMIGEYLRGGNPGCAMKLFRIM 265

Query: 269 MKIGIRGNSTTMVNILGACGRSARLNEGRSVHGFMYRTSMKFCVFIDTALVDMYGKCQRV 328
           +K+GIRGNSTTMVN+LGAC RSARLNEGRSVHGFMYR  MKFC+FIDTAL+D+Y KCQRV
Sbjct: 266 VKMGIRGNSTTMVNVLGACSRSARLNEGRSVHGFMYRALMKFCIFIDTALIDLYSKCQRV 325

Query: 329 SVARRLFDRMVNRNLVTWNAMVLGHCLHGNPEDGLKLFEEMAAKLRERNGEAGSGKKFKQ 388
           SVARR+FDRM+NRNLVTWNAMVLGHCL GNPEDGL+LFEEMAAKLRER GE    KK+ +
Sbjct: 326 SVARRVFDRMLNRNLVTWNAMVLGHCLQGNPEDGLELFEEMAAKLRERTGETDHDKKYGR 385

Query: 389 DEGERKVFPDQITFIGVLCACARAGLLEDANNYFDEMINIFLVRPNFAHYWCLANVYVAA 448
           DEG+R+VFPDQITFIGVLCACARAGLL+DA +YFDEMIN+FLVRPNFAHYWCLANVYVAA
Sbjct: 386 DEGKREVFPDQITFIGVLCACARAGLLKDATSYFDEMINVFLVRPNFAHYWCLANVYVAA 445

Query: 449 GLIQQAVEILRNMPEDIEDFSSELVVWTNLLATCRFGGDVSLGEQIANYLIDMEPKNESY 508
           GLIQQAVEILRNMP D EDFSSE  +W NLL +CRF GDVSLGEQIANYLI+ EPKNESY
Sbjct: 446 GLIQQAVEILRNMPGDNEDFSSESAIWINLLTSCRFAGDVSLGEQIANYLINTEPKNESY 505

Query: 509 YRLLLNIYAVAGRWEDVSRIKVLMKEKRLGTFPGCRLVDLKEIVHRLKLGNLLQEGMKET 568
           YRLLLNIYAVAG+WEDV+R+K+LMKEKRLG  PGCRL+DLKEIVHRLK GNLLQEGM+E+
Sbjct: 506 YRLLLNIYAVAGKWEDVTRVKLLMKEKRLGRTPGCRLIDLKEIVHRLKFGNLLQEGMEES 565

Query: 569 NSVMHKLASEVSLLSTIAAGQSDLRV 594
           N+VM KLASEVSL S IAAGQSD+ V
Sbjct: 566 NTVMLKLASEVSLWSNIAAGQSDIGV 591

[Close]

BLAST of Cp4.1LG10g00040 vs. TAIR 10
Match: AT3G51320.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 502.7 bits (1293), Expect = 4.1e-142
Identity = 238/481 (49.48%), Postives = 325/481 (67.57%), Query Frame = 0


Query: 78  DITDAIRFFNHASEFGDIVYTVLIFKLINVPNAFCINRVIKAYSLSSVPLEAVFVYFQWL 137
           D + AIR    +S FGD  YTV I++  ++   +C N V KAY +SS P +A+  YF  L
Sbjct: 53  DSSWAIRLLKSSSRFGDSSYTVSIYR--SIGKLYCANPVFKAYLVSSSPKQALGFYFDIL 112

Query: 138 GDGFRPDTYTFLSLFCACASIGCGSSGRKCHGQAFKNGVDCVMVLRNSLIHMYACCGHIE 197
             GF PD+YTF+SL        C  SG+ CHGQA K+G D V+ ++NSL+HMY CCG ++
Sbjct: 113 RFGFVPDSYTFVSLISCIEKTCCVDSGKMCHGQAIKHGCDQVLPVQNSLMHMYTCCGALD 172

Query: 198 LGRKVFDEMSTLDLVSWNSIVTAYARVGDLHTAHDMFDAMPERNVVSWNLMISEYLRGGS 257
           L +K+F E+   D+VSWNSI+    R GD+  AH +FD MP++N++SWN+MIS YL   +
Sbjct: 173 LAKKLFVEIPKRDIVSWNSIIAGMVRNGDVLAAHKLFDEMPDKNIISWNIMISAYLGANN 232

Query: 258 PGCAMKLFRNMMKIGIRGNSTTMVNILGACGRSARLNEGRSVHGFMYRTSMKFCVFIDTA 317
           PG ++ LFR M++ G +GN +T+V +L ACGRSARL EGRSVH  + RT +   V IDTA
Sbjct: 233 PGVSISLFREMVRAGFQGNESTLVLLLNACGRSARLKEGRSVHASLIRTFLNSSVVIDTA 292

Query: 318 LVDMYGKCQRVSVARRLFDRMVNRNLVTWNAMVLGHCLHGNPEDGLKLFEEMAAKLRERN 377
           L+DMYGKC+ V +ARR+FD +  RN VTWN M+L HCLHG PE GL+LFE M       N
Sbjct: 293 LIDMYGKCKEVGLARRIFDSLSIRNKVTWNVMILAHCLHGRPEGGLELFEAMI------N 352

Query: 378 GEAGSGKKFKQDEGERKVFPDQITFIGVLCACARAGLLEDANNYFDEMINIFLVRPNFAH 437
           G                + PD++TF+GVLC CARAGL+    +Y+  M++ F ++PNF H
Sbjct: 353 G---------------MLRPDEVTFVGVLCGCARAGLVSQGQSYYSLMVDEFQIKPNFGH 412

Query: 438 YWCLANVYVAAGLIQQAVEILRNMPEDIEDFSSELVVWTNLLATCRFGGDVSLGEQIANY 497
            WC+AN+Y +AG  ++A E L+N+P+  ED + E   W NLL++ RF G+ +LGE IA  
Sbjct: 413 QWCMANLYSSAGFPEEAEEALKNLPD--EDVTPESTKWANLLSSSRFTGNPTLGESIAKS 472

Query: 498 LIDMEPKNESYYRLLLNIYAVAGRWEDVSRIKVLMKEKRLGTFPGCRLVDLKEIVHRLKL 557
           LI+ +P N  YY LL+NIY+V GRWEDV+R++ ++KE+++G  PGC LVDLKEIVH L+L
Sbjct: 473 LIETDPLNYKYYHLLMNIYSVTGRWEDVNRVREMVKERKIGRIPGCGLVDLKEIVHGLRL 508

Query: 558 G 559
           G
Sbjct: 533 G 508

[Close]

BLAST of Cp4.1LG10g00040 vs. TAIR 10
Match: AT2G20540.1 (mitochondrial editing factor 21 )

HSP 1 Score: 291.6 bits (745), Expect = 1.4e-78
Identity = 155/485 (31.96%), Postives = 258/485 (53.20%), Query Frame = 0


Query: 94  DIVYTVLIFKLINVPNAFCINRVIKAYSLSSVPLEAVFVYFQWLGDGFR-PDTYTFLSLF 153
           D+ Y   +F  ++ PN F  N +I+AY+ +S+  + + +Y Q L   F  PD +TF  +F
Sbjct: 57  DMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMF 116

Query: 154 CACASIGCGSSGRKCHGQAFKNGVDCVMVLRNSLIHMYACCGHIELGRKVFDEMSTLDLV 213
            +CAS+G    G++ HG   K G    +V  N+LI MY     +    KVFDEM   D++
Sbjct: 117 KSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVI 176

Query: 214 SWNSIVTAYARVGDLHTAHDMFDAMPERNVVSWNLMISEYLRGGSPGCAMKLFRNMMKIG 273
           SWNS+++ YAR+G +  A  +F  M ++ +VSW  MIS Y   G    AM  FR M   G
Sbjct: 177 SWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAG 236

Query: 274 IRGNSTTMVNILGACGRSARLNEGRSVHGFMYRTSMKFCVFIDTALVDMYGKCQRVSVAR 333
           I  +  +++++L +C +   L  G+ +H +  R        +  AL++MY KC  +S A 
Sbjct: 237 IEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAI 296

Query: 334 RLFDRMVNRNLVTWNAMVLGHCLHGNPEDGLKLFEEMAAKLRERNGEAGSGKKFKQDEGE 393
           +LF +M  +++++W+ M+ G+  HGN    ++ F EM                       
Sbjct: 297 QLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQ---------------------R 356

Query: 394 RKVFPDQITFIGVLCACARAGLLEDANNYFDEMINIFLVRPNFAHYWCLANVYVAAGLIQ 453
            KV P+ ITF+G+L AC+  G+ ++   YFD M   + + P   HY CL +V   AG ++
Sbjct: 357 AKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLE 416

Query: 454 QAVEILRNMPEDIEDFSSELVVWTNLLATCRFGGDVSLGEQIANYLIDMEPKNESYYRLL 513
           +AVEI + MP        +  +W +LL++CR  G++ +     ++L+++EP++   Y LL
Sbjct: 417 RAVEITKTMP-----MKPDSKIWGSLLSSCRTPGNLDVALVAMDHLVELEPEDMGNYVLL 476

Query: 514 LNIYAVAGRWEDVSRIKVLMKEKRLGTFPGCRLVDLKEIVHRLKLGNLLQEGMKETNSVM 573
            NIYA  G+WEDVSR++ +++ + +   PG  L+++  IV     G+  +    E + V+
Sbjct: 477 ANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLIEVNNIVQEFVSGDNSKPFWTEISIVL 515

Query: 574 HKLAS 578
               S
Sbjct: 537 QLFTS 515

[Close]

BLAST of Cp4.1LG10g00040 vs. TAIR 10
Match: AT4G37380.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 289.3 bits (739), Expect = 7.2e-78
Identity = 163/523 (31.17%), Postives = 275/523 (52.58%), Query Frame = 0


Query: 59  LHFALLQ-NQIFHSTPEILPDITDAIRFFNHASEFGDIVYTVLIFKLINVPNAFCINRVI 118
           +H A+L+ N + H    +L      ++     +  G I +++ +F     P+ F     I
Sbjct: 48  IHAAILRHNLLLHPRYPVL-----NLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAI 107

Query: 119 KAYSLSSVPLEAVFVYFQWLGDGFRPDTYTFLSLFCACASIGCGSSGRKCHGQAFKNGVD 178
              S++ +  +A  +Y Q L     P+ +TF SL  +C++     SG+  H    K G+ 
Sbjct: 108 NTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCST----KSGKLIHTHVLKFGLG 167

Query: 179 CVMVLRNSLIHMYACCGHIELGRKVFDEMSTLDLVSWNSIVTAYARVGDLHTAHDMFDAM 238
               +   L+ +YA  G +   +KVFD M    LVS  +++T YA+ G++  A  +FD+M
Sbjct: 168 IDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSM 227

Query: 239 PERNVVSWNLMISEYLRGGSPGCAMKLFRNMMKIG-IRGNSTTMVNILGACGRSARLNEG 298
            ER++VSWN+MI  Y + G P  A+ LF+ ++  G  + +  T+V  L AC +   L  G
Sbjct: 228 CERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETG 287

Query: 299 RSVHGFMYRTSMKFCVFIDTALVDMYGKCQRVSVARRLFDRMVNRNLVTWNAMVLGHCLH 358
           R +H F+  + ++  V + T L+DMY KC  +  A  +F+    +++V WNAM+ G+ +H
Sbjct: 288 RWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMH 347

Query: 359 GNPEDGLKLFEEMAAKLRERNGEAGSGKKFKQDEGERKVFPDQITFIGVLCACARAGLLE 418
           G  +D L+LF EM                    +G   + P  ITFIG L ACA AGL+ 
Sbjct: 348 GYSQDALRLFNEM--------------------QGITGLQPTDITFIGTLQACAHAGLVN 407

Query: 419 DANNYFDEMINIFLVRPNFAHYWCLANVYVAAGLIQQAVEILRNMPEDIEDFSSELVVWT 478
           +    F+ M   + ++P   HY CL ++   AG +++A E ++NM  D     ++ V+W+
Sbjct: 408 EGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMD-----ADSVLWS 467

Query: 479 NLLATCRFGGDVSLGEQIANYLIDMEPKNESYYRLLLNIYAVAGRWEDVSRIKVLMKEKR 538
           ++L +C+  GD  LG++IA YLI +  KN   Y LL NIYA  G +E V++++ LMKEK 
Sbjct: 468 SVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKG 527

Query: 539 LGTFPGCRLVDLKEIVHRLKLGNLLQEGMKETNSVMHKLASEV 580
           +   PG   ++++  VH  + G+      KE  +++ K++  +
Sbjct: 528 IVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERI 536

[Close]

BLAST of Cp4.1LG10g00040 vs. TAIR 10
Match: AT5G48910.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 283.9 bits (725), Expect = 3.0e-76
Identity = 161/505 (31.88%), Postives = 266/505 (52.67%), Query Frame = 0


Query: 94  DIVYTVLIFKLINVPNAFCINRVIKAYSLS--SVPLEAVFVYFQWLGDGF-RPDTYTFLS 153
           D+ Y   IF  +   N F  N +I+ +S S     L A+ ++++ + D F  P+ +TF S
Sbjct: 74  DLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPS 133

Query: 154 LFCACASIGCGSSGRKCHGQAFKNGVDCVMVLRNSLIHMYACCGHIELGRKVF------D 213
           +  ACA  G    G++ HG A K G      + ++L+ MY  CG ++  R +F       
Sbjct: 134 VLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEK 193

Query: 214 EMSTL--------DLVSWNSIVTAYARVGDLHTAHDMFDAMPERNVVSWNLMISEYLRGG 273
           +M  +        ++V WN ++  Y R+GD   A  +FD M +R+VVSWN MIS Y   G
Sbjct: 194 DMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNG 253

Query: 274 SPGCAMKLFRNMMKIGIRGNSTTMVNILGACGRSARLNEGRSVHGFMYRTSMKFCVFIDT 333
               A+++FR M K  IR N  T+V++L A  R   L  G  +H +   + ++    + +
Sbjct: 254 FFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGS 313

Query: 334 ALVDMYGKCQRVSVARRLFDRMVNRNLVTWNAMVLGHCLHGNPEDGLKLFEEMAAKLRER 393
           AL+DMY KC  +  A  +F+R+   N++TW+AM+ G  +HG   D +  F     K+R  
Sbjct: 314 ALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCF----CKMR-- 373

Query: 394 NGEAGSGKKFKQDEGERKVFPDQITFIGVLCACARAGLLEDANNYFDEMINIFLVRPNFA 453
             +AG             V P  + +I +L AC+  GL+E+   YF +M+++  + P   
Sbjct: 374 --QAG-------------VRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIE 433

Query: 454 HYWCLANVYVAAGLIQQAVEILRNMPEDIEDFSSELVVWTNLLATCRFGGDVSLGEQIAN 513
           HY C+ ++   +GL+ +A E + NMP   +D     V+W  LL  CR  G+V +G+++AN
Sbjct: 434 HYGCMVDLLGRSGLLDEAEEFILNMPIKPDD-----VIWKALLGACRMQGNVEMGKRVAN 493

Query: 514 YLIDMEPKNESYYRLLLNIYAVAGRWEDVSRIKVLMKEKRLGTFPGCRLVDLKEIVHRLK 573
            L+DM P +   Y  L N+YA  G W +VS +++ MKEK +   PGC L+D+  ++H   
Sbjct: 494 ILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFV 552

Query: 574 LGNLLQEGMKETNSVMHKLASEVSL 582
           + +      KE NS++ +++ ++ L
Sbjct: 554 VEDDSHPKAKEINSMLVEISDKLRL 552

[Close]

BLAST of Cp4.1LG10g00040 vs. TAIR 10
Match: AT2G42920.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 279.3 bits (713), Expect = 7.4e-75
Identity = 159/501 (31.74%), Postives = 264/501 (52.69%), Query Frame = 0


Query: 94  DIVYTVLIFKLINVPNAFCINRVIKAYSLSSVPLEAVFVYFQWL--GDGFRPDTYTFLSL 153
           D+ Y  L+F  IN  N F  N +I+ +S SS P  A+ ++   L      +P   T+ S+
Sbjct: 73  DMNYAYLVFTRINHKNPFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSV 132

Query: 154 FCACASIGCGSSGRKCHGQAFKNGVDCVMVLRNSLIHMYACCGHIELGRKVFDEMSTLDL 213
           F A   +G    GR+ HG   K G++    +RN+++HMY  CG +    ++F  M   D+
Sbjct: 133 FKAYGRLGQARDGRQLHGMVIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDV 192

Query: 214 VSWNSIVTAYARVGDLHTAHDMFDAMPERNVVSWNLMISEYLRGGSPGCAMKLFRNMMKI 273
           V+WNS++  +A+ G +  A ++FD MP+RN VSWN MIS ++R G    A+ +FR M + 
Sbjct: 193 VAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEK 252

Query: 274 GIRGNSTTMVNILGACGRSARLNEGRSVHGFMYRTSMKFCVFIDTALVDMYGKCQRVSVA 333
            ++ +  TMV++L AC       +GR +H ++ R   +    + TAL+DMY KC  +   
Sbjct: 253 DVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEG 312

Query: 334 RRLFDRMVNRNLVTWNAMVLGHCLHGNPEDGLKLFEEMAAKLRERNGEAGSGKKFKQDEG 393
             +F+    + L  WN+M+LG   +G  E  + LF E+     ER+G             
Sbjct: 313 LNVFECAPKKQLSCWNSMILGLANNGFEERAMDLFSEL-----ERSG------------- 372

Query: 394 ERKVFPDQITFIGVLCACARAGLLEDANNYFDEMINIFLVRPNFAHYWCLANVYVAAGLI 453
              + PD ++FIGVL ACA +G +  A+ +F  M   +++ P+  HY  + NV   AGL+
Sbjct: 373 ---LEPDSVSFIGVLTACAHSGEVHRADEFFRLMKEKYMIEPSIKHYTLMVNVLGGAGLL 432

Query: 454 QQAVEILRNMPEDIEDFSSELVVWTNLLATCRFGGDVSLGEQIANYLIDMEPKNESYYRL 513
           ++A  +++NMP +      + V+W++LL+ CR  G+V + ++ A  L  ++P     Y L
Sbjct: 433 EEAEALIKNMPVE-----EDTVIWSSLLSACRKIGNVEMAKRAAKCLKKLDPDETCGYVL 492

Query: 514 LLNIYAVAGRWEDVSRIKVLMKEKRLGTFPGCRLVDLKEIVHRLKLGNLLQEGMKETNSV 573
           L N YA  G +E+    ++LMKE+++    GC  +++   VH             E  S+
Sbjct: 493 LSNAYASYGLFEEAVEQRLLMKERQMEKEVGCSSIEVDFEVHEFISCGGTHPKSAEIYSL 544

Query: 574 MHKLASEVSLLSTIAAGQSDL 593
           +  L  +V   STI +G ++L
Sbjct: 553 LDILNWDV---STIKSGFAEL 544

The following BLAST results are available for this feature:

BLAST of Cp4.1LG10g00040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0WVU0	5.8e-141	49.48	Pentatricopeptide repeat-containing protein At3g51320 OS=Arabidopsis thaliana OX...	[more]
Q9SIL5	2.0e-77	31.96	Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana OX...	[more]
Q9SZT8	1.0e-76	31.17	Pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Arabidopsis t...	[more]
Q9FI80	4.2e-75	31.88	Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana OX...	[more]
Q9SJG6	1.0e-73	31.74	Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidop...	[more]

BLAST of Cp4.1LG10g00040 vs. NCBI nr


Match Name	Identity	Description
XP_023544621.1	100.00	pentatricopeptide repeat-containing protein At3g51320 isoform X2 [Cucurbita pepo...	[more]
XP_023544620.1	100.00	pentatricopeptide repeat-containing protein At3g51320 isoform X1 [Cucurbita pepo...	[more]
XP_022950691.1	98.81	pentatricopeptide repeat-containing protein At3g51320 isoform X2 [Cucurbita mosc...	[more]
XP_022950690.1	98.81	pentatricopeptide repeat-containing protein At3g51320 isoform X1 [Cucurbita mosc...	[more]
KAG7034075.1	98.22	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]

BLAST of Cp4.1LG10g00040 vs. ExPASy TrEMBL


Match Name	Identity	Description
A0A6J1GFI6	98.81	pentatricopeptide repeat-containing protein At3g51320 isoform X2 OS=Cucurbita mo...	[more]
A0A6J1GGG4	98.81	pentatricopeptide repeat-containing protein At3g51320 isoform X1 OS=Cucurbita mo...	[more]
A0A6J1ITV7	88.52	pentatricopeptide repeat-containing protein At3g51320 isoform X1 OS=Cucurbita ma...	[more]
A0A6J1IPV8	96.25	pentatricopeptide repeat-containing protein At3g51320 isoform X2 OS=Cucurbita ma...	[more]
A0A6J1BTT2	84.39	pentatricopeptide repeat-containing protein At3g51320 OS=Momordica charantia OX=...	[more]

BLAST of Cp4.1LG10g00040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G51320.1	4.1e-142	49.48	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G20540.1	1.4e-78	31.96	mitochondrial editing factor 21	[more]
AT4G37380.1	7.2e-78	31.17	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G48910.1	3.0e-76	31.88	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G42920.1	7.4e-75	31.74	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 377..546 e-value: 9.0E-18 score: 66.7 coord: 110..259 e-value: 2.1E-25 score: 91.7
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 274..376 e-value: 1.6E-18 score: 68.7
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 434..524
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 243..273 e-value: 3.1E-4 score: 20.8 coord: 316..342 e-value: 0.071 score: 13.4 coord: 184..207 e-value: 0.0052 score: 16.9 coord: 401..426 e-value: 0.016 score: 15.4 coord: 212..242 e-value: 2.2E-5 score: 24.4 coord: 344..369 e-value: 2.3E-6 score: 27.5
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 243..270 e-value: 0.0017 score: 16.4 coord: 344..369 e-value: 3.0E-5 score: 21.9 coord: 212..243 e-value: 1.4E-5 score: 22.9 coord: 184..210 e-value: 0.0026 score: 15.8
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 342..372 score: 10.270796
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 210..244 score: 11.060009
None	No IPR available	PANTHER	PTHR47928:SF120	OS05G0107000 PROTEIN	coord: 73..564
None	No IPR available	PANTHER	PTHR47928	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	coord: 73..564

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG10g00040.1	Cp4.1LG10g00040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding