Cp4.1LG09g11600 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTCGTCTCTCTATCCACTCTCATGACGCTCTGTGCGAAACAAGCGTACAGAGCGTCGAAAAAGATTCAAACAAAATTGAAATCGAAGCGGTTTCTGAAGAACACGAAGACGAAGGAGAAGAAGAAGAAGAAGAACCGCGGCAGCGACGAAATGGAAGAGGAGTGGGGAGACGGGGGAGTATGGCAGAAGGCGATCTTGATGGGGGATAAATGTGAGCCCTTGGATTTCTCGGGCGTAATTTATTACGATAGTTACGGGAAGCAGCTGGACGAAGTGCCTCCACGATCGCCACGTGCCAGTCCCTTGCCAGCCTTTCTTACAACCACTCACCGCCAGGTGTATTGA ATGCTCGTCTCTCTATCCACTCTCATGACGCTCTGTGCGAAACAAGCGTACAGAGCGTCGAAAAAGATTCAAACAAAATTGAAATCGAAGCGGTTTCTGAAGAACACGAAGACGAAGGAGAAGAAGAAGAAGAAGAACCGCGGCAGCGACGAAATGGAAGAGGAGTGGGGAGACGGGGGAGTATGGCAGAAGGCGATCTTGATGGGGGATAAATGTGAGCCCTTGGATTTCTCGGGCGTAATTTATTACGATAGTTACGGGAAGCAGCTGGACGAAGTGCCTCCACGATCGCCACGTGCCAGTCCCTTGCCAGCCTTTCTTACAACCACTCACCGCCAGGTGTATTGA ATGCTCGTCTCTCTATCCACTCTCATGACGCTCTGTGCGAAACAAGCGTACAGAGCGTCGAAAAAGATTCAAACAAAATTGAAATCGAAGCGGTTTCTGAAGAACACGAAGACGAAGGAGAAGAAGAAGAAGAAGAACCGCGGCAGCGACGAAATGGAAGAGGAGTGGGGAGACGGGGGAGTATGGCAGAAGGCGATCTTGATGGGGGATAAATGTGAGCCCTTGGATTTCTCGGGCGTAATTTATTACGATAGTTACGGGAAGCAGCTGGACGAAGTGCCTCCACGATCGCCACGTGCCAGTCCCTTGCCAGCCTTTCTTACAACCACTCACCGCCAGGTGTATTGA MLVSLSTLMTLCAKQAYRASKKIQTKLKSKRFLKNTKTKEKKKKKNRGSDEMEEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDSYGKQLDEVPPRSPRASPLPAFLTTTHRQVY Homology
BLAST of Cp4.1LG09g11600 vs. NCBI nr
Match: XP_023542207.1 (uncharacterized protein LOC111802174 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 212 bits (540), Expect = 4.38e-69 Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0
BLAST of Cp4.1LG09g11600 vs. NCBI nr
Match: KAG7012107.1 (hypothetical protein SDJN02_24858, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 211 bits (538), Expect = 2.59e-68 Identity = 111/118 (94.07%), Postives = 114/118 (96.61%), Query Frame = 0
BLAST of Cp4.1LG09g11600 vs. NCBI nr
Match: XP_022955290.1 (uncharacterized protein LOC111457294 [Cucurbita moschata] >KAG6572921.1 hypothetical protein SDJN03_26808, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 207 bits (528), Expect = 8.96e-67 Identity = 110/119 (92.44%), Postives = 113/119 (94.96%), Query Frame = 0
BLAST of Cp4.1LG09g11600 vs. NCBI nr
Match: XP_008456286.1 (PREDICTED: uncharacterized protein LOC103496246 [Cucumis melo] >TYJ98977.1 uncharacterized protein E5676_scaffold248G001800 [Cucumis melo var. makuwa]) HSP 1 Score: 159 bits (401), Expect = 4.18e-47 Identity = 92/135 (68.15%), Postives = 98/135 (72.59%), Query Frame = 0
BLAST of Cp4.1LG09g11600 vs. NCBI nr
Match: XP_011650441.1 (uncharacterized protein LOC105434785 [Cucumis sativus] >KGN64104.1 hypothetical protein Csa_013118 [Cucumis sativus]) HSP 1 Score: 157 bits (398), Expect = 1.09e-46 Identity = 93/132 (70.45%), Postives = 99/132 (75.00%), Query Frame = 0
BLAST of Cp4.1LG09g11600 vs. ExPASy TrEMBL
Match: A0A6J1GUR4 (uncharacterized protein LOC111457294 OS=Cucurbita moschata OX=3662 GN=LOC111457294 PE=4 SV=1) HSP 1 Score: 207 bits (528), Expect = 4.34e-67 Identity = 110/119 (92.44%), Postives = 113/119 (94.96%), Query Frame = 0
BLAST of Cp4.1LG09g11600 vs. ExPASy TrEMBL
Match: A0A5D3BIM5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001800 PE=4 SV=1) HSP 1 Score: 159 bits (401), Expect = 2.02e-47 Identity = 92/135 (68.15%), Postives = 98/135 (72.59%), Query Frame = 0
BLAST of Cp4.1LG09g11600 vs. ExPASy TrEMBL
Match: A0A1S3C2V4 (uncharacterized protein LOC103496246 OS=Cucumis melo OX=3656 GN=LOC103496246 PE=4 SV=1) HSP 1 Score: 159 bits (401), Expect = 2.02e-47 Identity = 92/135 (68.15%), Postives = 98/135 (72.59%), Query Frame = 0
BLAST of Cp4.1LG09g11600 vs. ExPASy TrEMBL
Match: A0A0A0LSY3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042160 PE=4 SV=1) HSP 1 Score: 157 bits (398), Expect = 5.27e-47 Identity = 93/132 (70.45%), Postives = 99/132 (75.00%), Query Frame = 0
BLAST of Cp4.1LG09g11600 vs. ExPASy TrEMBL
Match: A0A6J1C6P8 (uncharacterized protein LOC111008895 OS=Momordica charantia OX=3673 GN=LOC111008895 PE=4 SV=1) HSP 1 Score: 154 bits (388), Expect = 1.91e-45 Identity = 86/137 (62.77%), Postives = 99/137 (72.26%), Query Frame = 0
BLAST of Cp4.1LG09g11600 vs. TAIR 10
Match: AT1G49000.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: stem; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18560.1); Has 105 Blast hits to 105 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 82.8 bits (203), Expect = 2.0e-16 Identity = 54/133 (40.60%), Postives = 72/133 (54.14%), Query Frame = 0
BLAST of Cp4.1LG09g11600 vs. TAIR 10
Match: AT3G18560.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G49000.1); Has 95 Blast hits to 95 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 73.6 bits (179), Expect = 1.2e-13 Identity = 45/88 (51.14%), Postives = 54/88 (61.36%), Query Frame = 0
BLAST of Cp4.1LG09g11600 vs. TAIR 10
Match: AT1G71740.1 (unknown protein; Has 82 Blast hits to 82 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 45.4 bits (106), Expect = 3.5e-05 Identity = 23/45 (51.11%), Postives = 29/45 (64.44%), Query Frame = 0
BLAST of Cp4.1LG09g11600 vs. TAIR 10
Match: AT3G14760.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible; Has 63 Blast hits to 63 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 41.2 bits (95), Expect = 6.6e-04 Identity = 17/27 (62.96%), Postives = 20/27 (74.07%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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