Cp4.1LG09g11600 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG09g11600
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG09: 9818983 .. 9819330 (-)
RNA-Seq ExpressionCp4.1LG09g11600
SyntenyCp4.1LG09g11600
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCGTCTCTCTATCCACTCTCATGACGCTCTGTGCGAAACAAGCGTACAGAGCGTCGAAAAAGATTCAAACAAAATTGAAATCGAAGCGGTTTCTGAAGAACACGAAGACGAAGGAGAAGAAGAAGAAGAAGAACCGCGGCAGCGACGAAATGGAAGAGGAGTGGGGAGACGGGGGAGTATGGCAGAAGGCGATCTTGATGGGGGATAAATGTGAGCCCTTGGATTTCTCGGGCGTAATTTATTACGATAGTTACGGGAAGCAGCTGGACGAAGTGCCTCCACGATCGCCACGTGCCAGTCCCTTGCCAGCCTTTCTTACAACCACTCACCGCCAGGTGTATTGA

mRNA sequence

ATGCTCGTCTCTCTATCCACTCTCATGACGCTCTGTGCGAAACAAGCGTACAGAGCGTCGAAAAAGATTCAAACAAAATTGAAATCGAAGCGGTTTCTGAAGAACACGAAGACGAAGGAGAAGAAGAAGAAGAAGAACCGCGGCAGCGACGAAATGGAAGAGGAGTGGGGAGACGGGGGAGTATGGCAGAAGGCGATCTTGATGGGGGATAAATGTGAGCCCTTGGATTTCTCGGGCGTAATTTATTACGATAGTTACGGGAAGCAGCTGGACGAAGTGCCTCCACGATCGCCACGTGCCAGTCCCTTGCCAGCCTTTCTTACAACCACTCACCGCCAGGTGTATTGA

Coding sequence (CDS)

ATGCTCGTCTCTCTATCCACTCTCATGACGCTCTGTGCGAAACAAGCGTACAGAGCGTCGAAAAAGATTCAAACAAAATTGAAATCGAAGCGGTTTCTGAAGAACACGAAGACGAAGGAGAAGAAGAAGAAGAAGAACCGCGGCAGCGACGAAATGGAAGAGGAGTGGGGAGACGGGGGAGTATGGCAGAAGGCGATCTTGATGGGGGATAAATGTGAGCCCTTGGATTTCTCGGGCGTAATTTATTACGATAGTTACGGGAAGCAGCTGGACGAAGTGCCTCCACGATCGCCACGTGCCAGTCCCTTGCCAGCCTTTCTTACAACCACTCACCGCCAGGTGTATTGA

Protein sequence

MLVSLSTLMTLCAKQAYRASKKIQTKLKSKRFLKNTKTKEKKKKKNRGSDEMEEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDSYGKQLDEVPPRSPRASPLPAFLTTTHRQVY
Homology
BLAST of Cp4.1LG09g11600 vs. NCBI nr
Match: XP_023542207.1 (uncharacterized protein LOC111802174 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 212 bits (540), Expect = 4.38e-69
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0

Query: 9   MTLCAKQAYRASKKIQTKLKSKRFLKNTKTKEKKKKKNRGSDEMEEEWGDGGVWQKAILM 68
           MTLCAKQAYRASKKIQTKLKSKRFLKNTKTKEKKKKKNRGSDEMEEEWGDGGVWQKAILM
Sbjct: 1   MTLCAKQAYRASKKIQTKLKSKRFLKNTKTKEKKKKKNRGSDEMEEEWGDGGVWQKAILM 60

Query: 69  GDKCEPLDFSGVIYYDSYGKQLDEVPPRSPRASPLPAFLTTTHRQVY 115
           GDKCEPLDFSGVIYYDSYGKQLDEVPPRSPRASPLPAFLTTTHRQVY
Sbjct: 61  GDKCEPLDFSGVIYYDSYGKQLDEVPPRSPRASPLPAFLTTTHRQVY 107

BLAST of Cp4.1LG09g11600 vs. NCBI nr
Match: KAG7012107.1 (hypothetical protein SDJN02_24858, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 211 bits (538), Expect = 2.59e-68
Identity = 111/118 (94.07%), Postives = 114/118 (96.61%), Query Frame = 0

Query: 1   MLVSLSTLMTLCAKQAYRASKKIQTKLKSKRFLKNTKTKEK---KKKKNRGSDEMEEEWG 60
           MLVSLSTLMTLCAKQAYRASKKIQTKLKSKRFLKNTKTK+K   KKKKNRGSDEMEEEWG
Sbjct: 23  MLVSLSTLMTLCAKQAYRASKKIQTKLKSKRFLKNTKTKKKQKKKKKKNRGSDEMEEEWG 82

Query: 61  DGGVWQKAILMGDKCEPLDFSGVIYYDSYGKQLDEVPPRSPRASPLPAFLTTTHRQVY 115
           DGGVWQKAILMGDKCEPLDFSGVIYYDSYGKQLDEVPPRSPRASPLP+FLT+TH QVY
Sbjct: 83  DGGVWQKAILMGDKCEPLDFSGVIYYDSYGKQLDEVPPRSPRASPLPSFLTSTHPQVY 140

BLAST of Cp4.1LG09g11600 vs. NCBI nr
Match: XP_022955290.1 (uncharacterized protein LOC111457294 [Cucurbita moschata] >KAG6572921.1 hypothetical protein SDJN03_26808, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 207 bits (528), Expect = 8.96e-67
Identity = 110/119 (92.44%), Postives = 113/119 (94.96%), Query Frame = 0

Query: 1   MLVSLSTLMTLCAKQAYRASKKIQTKLKSKRFLKNTKTKEKKKKK----NRGSDEMEEEW 60
           MLVSLSTLMTLCAKQAYRASKKIQTKLKSKRFLKNTKTK+KKKKK    NRGSDEMEEEW
Sbjct: 23  MLVSLSTLMTLCAKQAYRASKKIQTKLKSKRFLKNTKTKKKKKKKKKKKNRGSDEMEEEW 82

Query: 61  GDGGVWQKAILMGDKCEPLDFSGVIYYDSYGKQLDEVPPRSPRASPLPAFLTTTHRQVY 115
           GDGGVWQKAILMGDKCEPLDFSGVIYYDS GKQLDEVPPRSPRASPLP+FLT+TH QVY
Sbjct: 83  GDGGVWQKAILMGDKCEPLDFSGVIYYDSSGKQLDEVPPRSPRASPLPSFLTSTHPQVY 141

BLAST of Cp4.1LG09g11600 vs. NCBI nr
Match: XP_008456286.1 (PREDICTED: uncharacterized protein LOC103496246 [Cucumis melo] >TYJ98977.1 uncharacterized protein E5676_scaffold248G001800 [Cucumis melo var. makuwa])

HSP 1 Score: 159 bits (401), Expect = 4.18e-47
Identity = 92/135 (68.15%), Postives = 98/135 (72.59%), Query Frame = 0

Query: 1   MLVSLSTLMTLCAKQAYRASKKIQTKLKSK---------------RFLKNTKTK-----E 60
           +LVSLSTL+ LCAKQA RASKK+Q KLKSK               RFLKN          
Sbjct: 31  LLVSLSTLVALCAKQANRASKKLQIKLKSKQLPRLELRSPQLRPKRFLKNISNTAITLIH 90

Query: 61  KKKKKNRGSDEMEEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDSYGKQLDEVPPRSPRA 115
           KKK K  G  + EEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDS GKQL+EVP RSPRA
Sbjct: 91  KKKNKRGGGGDAEEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDSNGKQLNEVPLRSPRA 150

BLAST of Cp4.1LG09g11600 vs. NCBI nr
Match: XP_011650441.1 (uncharacterized protein LOC105434785 [Cucumis sativus] >KGN64104.1 hypothetical protein Csa_013118 [Cucumis sativus])

HSP 1 Score: 157 bits (398), Expect = 1.09e-46
Identity = 93/132 (70.45%), Postives = 99/132 (75.00%), Query Frame = 0

Query: 1   MLVSLSTLMTLCAKQAYRASKKIQTKLKSK---------------RFLKN-TKTKEKKKK 60
           ++VSLSTLM LCAKQA R SKK+Q KLKSK               RFLKN + T   KKK
Sbjct: 31  LIVSLSTLMALCAKQANRVSKKLQIKLKSKQLPRLELRSPQLRPKRFLKNISNTLIHKKK 90

Query: 61  KNRGS-DEMEEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDSYGKQLDEVPPRSPRASPL 115
             RG+ D  EEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDS GKQL+EVP RSPRASPL
Sbjct: 91  NKRGAGDAEEEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDSNGKQLNEVPLRSPRASPL 150

BLAST of Cp4.1LG09g11600 vs. ExPASy TrEMBL
Match: A0A6J1GUR4 (uncharacterized protein LOC111457294 OS=Cucurbita moschata OX=3662 GN=LOC111457294 PE=4 SV=1)

HSP 1 Score: 207 bits (528), Expect = 4.34e-67
Identity = 110/119 (92.44%), Postives = 113/119 (94.96%), Query Frame = 0

Query: 1   MLVSLSTLMTLCAKQAYRASKKIQTKLKSKRFLKNTKTKEKKKKK----NRGSDEMEEEW 60
           MLVSLSTLMTLCAKQAYRASKKIQTKLKSKRFLKNTKTK+KKKKK    NRGSDEMEEEW
Sbjct: 23  MLVSLSTLMTLCAKQAYRASKKIQTKLKSKRFLKNTKTKKKKKKKKKKKNRGSDEMEEEW 82

Query: 61  GDGGVWQKAILMGDKCEPLDFSGVIYYDSYGKQLDEVPPRSPRASPLPAFLTTTHRQVY 115
           GDGGVWQKAILMGDKCEPLDFSGVIYYDS GKQLDEVPPRSPRASPLP+FLT+TH QVY
Sbjct: 83  GDGGVWQKAILMGDKCEPLDFSGVIYYDSSGKQLDEVPPRSPRASPLPSFLTSTHPQVY 141

BLAST of Cp4.1LG09g11600 vs. ExPASy TrEMBL
Match: A0A5D3BIM5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001800 PE=4 SV=1)

HSP 1 Score: 159 bits (401), Expect = 2.02e-47
Identity = 92/135 (68.15%), Postives = 98/135 (72.59%), Query Frame = 0

Query: 1   MLVSLSTLMTLCAKQAYRASKKIQTKLKSK---------------RFLKNTKTK-----E 60
           +LVSLSTL+ LCAKQA RASKK+Q KLKSK               RFLKN          
Sbjct: 31  LLVSLSTLVALCAKQANRASKKLQIKLKSKQLPRLELRSPQLRPKRFLKNISNTAITLIH 90

Query: 61  KKKKKNRGSDEMEEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDSYGKQLDEVPPRSPRA 115
           KKK K  G  + EEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDS GKQL+EVP RSPRA
Sbjct: 91  KKKNKRGGGGDAEEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDSNGKQLNEVPLRSPRA 150

BLAST of Cp4.1LG09g11600 vs. ExPASy TrEMBL
Match: A0A1S3C2V4 (uncharacterized protein LOC103496246 OS=Cucumis melo OX=3656 GN=LOC103496246 PE=4 SV=1)

HSP 1 Score: 159 bits (401), Expect = 2.02e-47
Identity = 92/135 (68.15%), Postives = 98/135 (72.59%), Query Frame = 0

Query: 1   MLVSLSTLMTLCAKQAYRASKKIQTKLKSK---------------RFLKNTKTK-----E 60
           +LVSLSTL+ LCAKQA RASKK+Q KLKSK               RFLKN          
Sbjct: 31  LLVSLSTLVALCAKQANRASKKLQIKLKSKQLPRLELRSPQLRPKRFLKNISNTAITLIH 90

Query: 61  KKKKKNRGSDEMEEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDSYGKQLDEVPPRSPRA 115
           KKK K  G  + EEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDS GKQL+EVP RSPRA
Sbjct: 91  KKKNKRGGGGDAEEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDSNGKQLNEVPLRSPRA 150

BLAST of Cp4.1LG09g11600 vs. ExPASy TrEMBL
Match: A0A0A0LSY3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042160 PE=4 SV=1)

HSP 1 Score: 157 bits (398), Expect = 5.27e-47
Identity = 93/132 (70.45%), Postives = 99/132 (75.00%), Query Frame = 0

Query: 1   MLVSLSTLMTLCAKQAYRASKKIQTKLKSK---------------RFLKN-TKTKEKKKK 60
           ++VSLSTLM LCAKQA R SKK+Q KLKSK               RFLKN + T   KKK
Sbjct: 31  LIVSLSTLMALCAKQANRVSKKLQIKLKSKQLPRLELRSPQLRPKRFLKNISNTLIHKKK 90

Query: 61  KNRGS-DEMEEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDSYGKQLDEVPPRSPRASPL 115
             RG+ D  EEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDS GKQL+EVP RSPRASPL
Sbjct: 91  NKRGAGDAEEEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDSNGKQLNEVPLRSPRASPL 150

BLAST of Cp4.1LG09g11600 vs. ExPASy TrEMBL
Match: A0A6J1C6P8 (uncharacterized protein LOC111008895 OS=Momordica charantia OX=3673 GN=LOC111008895 PE=4 SV=1)

HSP 1 Score: 154 bits (388), Expect = 1.91e-45
Identity = 86/137 (62.77%), Postives = 99/137 (72.26%), Query Frame = 0

Query: 1   MLVSLSTLMTLCAKQAYRASKKIQTKLKSK---------------RFLKNTKT------- 60
           +L+SLSTL+ LCAK+A R SKK+QTKLKSK               RFLK+          
Sbjct: 29  LLISLSTLVALCAKEANRVSKKLQTKLKSKQFPRLELRSPQVRPKRFLKSISDTAITLMQ 88

Query: 61  KEKKKKKNRGSDEMEEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDSYGKQLDEVPPRSP 115
           K K KK  RG  + E+EWGDGG+WQKAILMGDKCEPL+FSGVIYYDS GKQL+EVPPRSP
Sbjct: 89  KNKNKKTKRGGCDAEDEWGDGGIWQKAILMGDKCEPLNFSGVIYYDSKGKQLNEVPPRSP 148

BLAST of Cp4.1LG09g11600 vs. TAIR 10
Match: AT1G49000.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: stem; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18560.1); Has 105 Blast hits to 105 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 82.8 bits (203), Expect = 2.0e-16
Identity = 54/133 (40.60%), Postives = 72/133 (54.14%), Query Frame = 0

Query: 5   LSTLMTLCAKQAYRASKKIQTKLKSK----------RFLKN------------------- 64
           L ++M LCA+ A R SKK++ K K +          RF  N                   
Sbjct: 22  LVSMMVLCARHANRLSKKLKLKSKKRTCSGGEGGGERFRWNMISSSMSSPRPKELFTTLS 81

Query: 65  TKTKEKKKKKNRGSDEMEEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDSYGKQLDEVPP 109
            K     ++KN   ++      + G+WQ+ ILMG KCEPLDFSGVIYYDS G+ L+EVPP
Sbjct: 82  NKAMTMVRRKNPPEEKATAMEEEHGLWQREILMGGKCEPLDFSGVIYYDSNGRLLNEVPP 141

BLAST of Cp4.1LG09g11600 vs. TAIR 10
Match: AT3G18560.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G49000.1); Has 95 Blast hits to 95 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-13
Identity = 45/88 (51.14%), Postives = 54/88 (61.36%), Query Frame = 0

Query: 21  KKIQTKLKSKRFL----KNTKTKEKKKKKNRGSDEMEEEWGDGGVWQKAILMGDKCEPLD 80
           K++ T L +K       KN        KK      MEE+  + GVWQ+ ILMG KCEPLD
Sbjct: 89  KELYTTLSNKAMTMVGRKNKAYDGGPTKKTAVEMVMEEDEEEYGVWQREILMGGKCEPLD 148

Query: 81  FSGVIYYDSYGKQLDEVPPRSPRASPLP 105
           +SGVIYYD  G QL +VPPRSPRAS +P
Sbjct: 149 YSGVIYYDCSGHQLKQVPPRSPRASLVP 176

BLAST of Cp4.1LG09g11600 vs. TAIR 10
Match: AT1G71740.1 (unknown protein; Has 82 Blast hits to 82 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.4 bits (106), Expect = 3.5e-05
Identity = 23/45 (51.11%), Postives = 29/45 (64.44%), Query Frame = 0

Query: 59  GGVWQKAILMGDKCEPLDFSGVIYYDSYGKQLDEVPPRSPRASPL 104
           G +WQK ILMG KC+  DFSGVI YD+ G    +V P +  + PL
Sbjct: 86  GPLWQKNILMGGKCQLPDFSGVILYDADG----QVVPPAKNSLPL 126

BLAST of Cp4.1LG09g11600 vs. TAIR 10
Match: AT3G14760.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible; Has 63 Blast hits to 63 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 41.2 bits (95), Expect = 6.6e-04
Identity = 17/27 (62.96%), Postives = 20/27 (74.07%), Query Frame = 0

Query: 61  VWQKAILMGDKCEPLDFSGVIYYDSYG 88
           VWQ+ ILMG+KCE   FSG+I YD  G
Sbjct: 116 VWQRPILMGEKCELPRFSGLILYDECG 142

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_023542207.14.38e-69100.00uncharacterized protein LOC111802174 [Cucurbita pepo subsp. pepo][more]
KAG7012107.12.59e-6894.07hypothetical protein SDJN02_24858, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022955290.18.96e-6792.44uncharacterized protein LOC111457294 [Cucurbita moschata] >KAG6572921.1 hypothet... [more]
XP_008456286.14.18e-4768.15PREDICTED: uncharacterized protein LOC103496246 [Cucumis melo] >TYJ98977.1 uncha... [more]
XP_011650441.11.09e-4670.45uncharacterized protein LOC105434785 [Cucumis sativus] >KGN64104.1 hypothetical ... [more]
Match NameE-valueIdentityDescription
A0A6J1GUR44.34e-6792.44uncharacterized protein LOC111457294 OS=Cucurbita moschata OX=3662 GN=LOC1114572... [more]
A0A5D3BIM52.02e-4768.15Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3C2V42.02e-4768.15uncharacterized protein LOC103496246 OS=Cucumis melo OX=3656 GN=LOC103496246 PE=... [more]
A0A0A0LSY35.27e-4770.45Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042160 PE=4 SV=1[more]
A0A6J1C6P81.91e-4562.77uncharacterized protein LOC111008895 OS=Momordica charantia OX=3673 GN=LOC111008... [more]
Match NameE-valueIdentityDescription
AT1G49000.12.0e-1640.60unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G18560.11.2e-1351.14unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G71740.13.5e-0551.11unknown protein; Has 82 Blast hits to 82 proteins in 12 species: Archae - 0; Bac... [more]
AT3G14760.16.6e-0462.96unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..55
NoneNo IPR availablePANTHERPTHR33237:SF26OS06G0499100 PROTEINcoord: 2..107
NoneNo IPR availablePANTHERPTHR33237F2P16.13 PROTEIN-RELATEDcoord: 2..107

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG09g11600.1Cp4.1LG09g11600.1mRNA