Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGCGGCAATGCGATTGAGGAACAGAACGAAACATGAGTTCGCTCCATTTTCGCCCCGCCCTGGTTTCGCCATGGAAGAAGAAGAGCAACAACAACCAGTTCCTCTCCGCCGTGCTCAATCGAACCTCTCCTCCTTCCATGGCGGCTCTTCCAAATTCAAATCACAAACCAATTTTCATCTCTCATCTCCTTTCTTTCGCCCTCTCCATAACCCTCACTTCGCCATTTCCTTCCCTCGCAATCCCTTCCTTCAACTCCCTCTCCTCTCCCCTTTCTCCCACCACTCCTTTTTCTCAATCCAAGGACTTACCAATCGGACTTGAAAACGGGTACGCTCTCAATTCTTCTCGTTAATCTCTGCATTTCTTCTGTAATTTCTCTTGATTGTCTCGCTCACAGCATGAACTATCGCCAATTTCTTTCTGCCCTAATTTTGCATTCGTCTTCTTAACTGAACCATTGATAATTTAGCTACATGTTGTCTTGATATTGCAGGAAGATTAGACCCTGTCCTTCAATCAATCCGTCGTGTGTTTCTACAAACCCCAAATCGTCATCGTTTGCTTTCCCTTTAAGCATTCCTGAGAGTTTTACTGGGAATCCGATTCAGGTTTTAGTTCTCTTAAAGCTCTGTATCACTTGCTTGAATGTTGTTTTACGTTAGTGGCTTCTTATAGTGTTGTCTTTCATGATTCTGCTCTACTTCGTTTATTTGCAGAAGCTGCAGGAAGTGATCCTTGAAACGCAGAGGAATGCAAAGATTCAGATGGTGGAAGATACCCCATATGGTAATTGAACTGAAATTATCAATAGTTTATTTGAAATTTACATTACAAATTGATATACCTCCCTATGTTCTTATTGAACTGCTGAGATAGAGATGAGATTGGACTCTGTTTATTAGTAAGCCAACCTATCTAGGTTATTCTTTTGAATTTCGTAGTGTTTTGACATAGTGATAGAAGTGAATCCTTGTTTTGATCCCGAAACACTTAAAAACGTAGCTAATAGGTCCTTAAACTTTCAAGGTGACATCTCGTAAGTTTCTAAACCGTAAAAAGTGTCCAATGAATGGAACTGTTCATGTTTCAAGTTTGTGTTCAAACTTTAAAAGTCTCGAAAATCATGTACATTTGGCACAAAAGCGAAAGTTTGTTTGTTACCTATTAAATACAAAATCACTTTTTAGTTTATAAGTGTGAGATCCCACGTCGGTTGGAGAGGAGAACAAAGCATTCTTTATAAGAGTGTGGAAACCTCTTCCTAGTAGACACGTTTTAAAACTGTGAGGCTGACGGCGATGCGTAACCGGCCATAGCGGACAATATCTACTAGCAGTCGGCTTGAGCTGTTACAAATGGTATCAGAGTCAAAAACACTGGGAGGTGTGCTAGGAAGGACGCGGCGTCCCAATGGAGTAGATTTTGAGATTCCACATTGGTTGGAGAGGAGAACAAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAGACGTGTTTTAAAACCGTGAGGCTGATGACGATACATAACGGGTCAAAGCGGATAATATCTCTTAGCGGTGGCCGTGGGCTGTTACAATAAGCCTATTAAATGTTTTTGTAGTTCAAGAACTTATTAGACATAAAGTTCGTACAATTTTACTTGAATCCCATGTGATTTCACTTCCTCTCGTGTATATCTCATGTTAACATCTCGAGCCTAACGCATAAGATAGAGTTCCTTACCCTATTAAGCTCGTGAGCCTATTAGATATTTTTTGTAGTTCAAGAACTTATTAGAAGACATAAATTTCGTACAATTTAGCTTGAATCCCATGAGATGTCACTTCCTCTCATGTAGATCTCATGTTAATATCTCGAGCGTAACGCATAAGATAGAGATCCTTATGCAAGAACATGCAGGTCAGTACATGGAAGCTGAGGTTGATGGGAACTTTGGGCGGGACGTGATTGAGTTTTTGGTGAGAGGAGATGTGGCTGCTTACAGGATAATGGCAGCAAAAGTGACTTATGTGTATCCTTTCACAACTGCTTTAGGGGACTCCAAAGGACAGGAAGAACGAATGAAGAAGATCATAGAAGAGTTGGATTGGTATTCTCCAACCTTTGAATCTATGGTTGACTAATCCAAATCCTGTTTGTTTCTTCTATATTCTTTGTTTTCTTCCCATTCCTTTGTAGTCACTACACTTGATGAGCTCATATGTATGATAGAGCTCGAGTTTAGCTCGGTTCCATTGGTTAAGACATCTTCCAAAAGTTGTATTATTATTCTTGACATTCGATTAATGTTTCAAAACTACCCTTGAAGTGAAAATACACATGTCTGAATGTCTTGTTTTTTCAGACAAGCA
mRNA sequence
GGCGGCAATGCGATTGAGGAACAGAACGAAACATGAGTTCGCTCCATTTTCGCCCCGCCCTGGTTTCGCCATGGAAGAAGAAGAGCAACAACAACCAGTTCCTCTCCGCCGTGCTCAATCGAACCTCTCCTCCTTCCATGGCGGCTCTTCCAAATTCAAATCACAAACCAATTTTCATCTCTCATCTCCTTTCTTTCGCCCTCTCCATAACCCTCACTTCGCCATTTCCTTCCCTCGCAATCCCTTCCTTCAACTCCCTCTCCTCTCCCCTTTCTCCCACCACTCCTTTTTCTCAATCCAAGGACTTACCAATCGGACTTGAAAACGGGAAGATTAGACCCTGTCCTTCAATCAATCCGTCGTGTGTTTCTACAAACCCCAAATCGTCATCGTTTGCTTTCCCTTTAAGCATTCCTGAGAGTTTTACTGGGAATCCGATTCAGAAGCTGCAGGAAGTGATCCTTGAAACGCAGAGGAATGCAAAGATTCAGATGGTGGAAGATACCCCATATGGTCAGTACATGGAAGCTGAGGTTGATGGGAACTTTGGGCGGGACGTGATTGAGTTTTTGGTGAGAGGAGATGTGGCTGCTTACAGGATAATGGCAGCAAAAGTGACTTATGTGTATCCTTTCACAACTGCTTTAGGGGACTCCAAAGGACAGGAAGAACGAATGAAGAAGATCATAGAAGAGTTGGATTGGTATTCTCCAACCTTTGAATCTATGGTTGACTAATCCAAATCCTGTTTGTTTCTTCTATATTCTTTGTTTTCTTCCCATTCCTTTGTAGTCACTACACTTGATGAGCTCATATGTATGATAGAGCTCGAGTTTAGCTCGGTTCCATTGGTTAAGACATCTTCCAAAAGTTGTATTATTATTCTTGACATTCGATTAATGTTTCAAAACTACCCTTGAAGTGAAAATACACATGTCTGAATGTCTTGTTTTTTCAGACAAGCA
Coding sequence (CDS)
ATGAGTTCGCTCCATTTTCGCCCCGCCCTGGTTTCGCCATGGAAGAAGAAGAGCAACAACAACCAGTTCCTCTCCGCCGTGCTCAATCGAACCTCTCCTCCTTCCATGGCGGCTCTTCCAAATTCAAATCACAAACCAATTTTCATCTCTCATCTCCTTTCTTTCGCCCTCTCCATAACCCTCACTTCGCCATTTCCTTCCCTCGCAATCCCTTCCTTCAACTCCCTCTCCTCTCCCCTTTCTCCCACCACTCCTTTTTCTCAATCCAAGGACTTACCAATCGGACTTGAAAACGGGAAGATTAGACCCTGTCCTTCAATCAATCCGTCGTGTGTTTCTACAAACCCCAAATCGTCATCGTTTGCTTTCCCTTTAAGCATTCCTGAGAGTTTTACTGGGAATCCGATTCAGAAGCTGCAGGAAGTGATCCTTGAAACGCAGAGGAATGCAAAGATTCAGATGGTGGAAGATACCCCATATGGTCAGTACATGGAAGCTGAGGTTGATGGGAACTTTGGGCGGGACGTGATTGAGTTTTTGGTGAGAGGAGATGTGGCTGCTTACAGGATAATGGCAGCAAAAGTGACTTATGTGTATCCTTTCACAACTGCTTTAGGGGACTCCAAAGGACAGGAAGAACGAATGAAGAAGATCATAGAAGAGTTGGATTGGTATTCTCCAACCTTTGAATCTATGGTTGACTAA
Protein sequence
MSSLHFRPALVSPWKKKSNNNQFLSAVLNRTSPPSMAALPNSNHKPIFISHLLSFALSITLTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSINPSCVSTNPKSSSFAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD
Homology
BLAST of Cp4.1LG09g09640 vs. ExPASy Swiss-Prot
Match:
Q9SW33 (Thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g24930 PE=1 SV=1)
HSP 1 Score: 243.0 bits (619), Expect = 3.3e-63
Identity = 131/206 (63.59%), Postives = 162/206 (78.64%), Query Frame = 0
Query: 28 LNRTSPPSMAALPNSNHKPIFISHLLSFALSITLTSPFPSLAIPSFNSLSSPLSPTTPFS 87
L+ TSPP ++ LP L+SFAL+I+LTS P+LAIPS +S S PL TTPF+
Sbjct: 33 LSSTSPP-ISLLPK----------LISFALAISLTSFSPALAIPSLSS-SQPL--TTPFT 92
Query: 88 QSKDLPIGLENGKIRPCPSINPSCVSTNPKSSSFAFPLSIPESFTGNPIQKLQEVILETQ 147
QSK + GL NGKIRPCPS NP CVSTNP SSSF+FPL+IPE+ T +PI+KL+E I+ TQ
Sbjct: 93 QSKFVQTGLLNGKIRPCPSTNPGCVSTNPTSSSFSFPLTIPETDTQDPIEKLKEAIMSTQ 152
Query: 148 RNAKIQMVEDTPYGQYMEAEVD-GNFGRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALG 207
+N K ++EDTPYG+Y+EAEV+ G F RDV+EFLV+ DV AYR MA KVT+VYPFTTA G
Sbjct: 153 KNPKFVVLEDTPYGRYVEAEVEGGGFSRDVMEFLVKQDVVAYRCMATKVTFVYPFTTAFG 212
Query: 208 DSKGQEERMKKIIEELDWYSPTFESM 233
DSKGQEER+KK+I++L WY+PTFESM
Sbjct: 213 DSKGQEERLKKLIDQLGWYAPTFESM 224
BLAST of Cp4.1LG09g09640 vs. NCBI nr
Match:
XP_023542750.1 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 464 bits (1194), Expect = 8.60e-165
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0
Query: 1 MSSLHFRPALVSPWKKKSNNNQFLSAVLNRTSPPSMAALPNSNHKPIFISHLLSFALSIT 60
MSSLHFRPALVSPWKKKSNNNQFLSAVLNRTSPPSMAALPNSNHKPIFISHLLSFALSIT
Sbjct: 1 MSSLHFRPALVSPWKKKSNNNQFLSAVLNRTSPPSMAALPNSNHKPIFISHLLSFALSIT 60
Query: 61 LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSINPSCVSTNPKSSS 120
LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSINPSCVSTNPKSSS
Sbjct: 61 LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSINPSCVSTNPKSSS 120
Query: 121 FAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180
FAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL
Sbjct: 121 FAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180
Query: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234
VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD
Sbjct: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234
BLAST of Cp4.1LG09g09640 vs. NCBI nr
Match:
KAG7012320.1 (Thylakoid lumenal 17.9 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 457 bits (1177), Expect = 3.36e-162
Identity = 230/234 (98.29%), Postives = 231/234 (98.72%), Query Frame = 0
Query: 1 MSSLHFRPALVSPWKKKSNNNQFLSAVLNRTSPPSMAALPNSNHKPIFISHLLSFALSIT 60
MSSLHFRPALVSPWKKK NNNQFLSAVLNRTSPPSMAALPN NHKPIFISHLLSFALSIT
Sbjct: 1 MSSLHFRPALVSPWKKKKNNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60
Query: 61 LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSINPSCVSTNPKSSS 120
LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPS NPSCVSTNPKSSS
Sbjct: 61 LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS 120
Query: 121 FAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180
FAFPLSIPES+TGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL
Sbjct: 121 FAFPLSIPESYTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180
Query: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234
VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD
Sbjct: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234
BLAST of Cp4.1LG09g09640 vs. NCBI nr
Match:
XP_022994453.1 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 [Cucurbita maxima])
HSP 1 Score: 457 bits (1177), Expect = 3.36e-162
Identity = 230/234 (98.29%), Postives = 231/234 (98.72%), Query Frame = 0
Query: 1 MSSLHFRPALVSPWKKKSNNNQFLSAVLNRTSPPSMAALPNSNHKPIFISHLLSFALSIT 60
MSSLHFRPALVSPWKK +NNNQFLSAVLNRTSPPSMAALPN NHKPIFISHLLSFALSIT
Sbjct: 1 MSSLHFRPALVSPWKKNNNNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60
Query: 61 LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSINPSCVSTNPKSSS 120
LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKD PIGLENGKIRPCPSINPSCVSTNPKSSS
Sbjct: 61 LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDFPIGLENGKIRPCPSINPSCVSTNPKSSS 120
Query: 121 FAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180
FAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL
Sbjct: 121 FAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180
Query: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234
VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD
Sbjct: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234
BLAST of Cp4.1LG09g09640 vs. NCBI nr
Match:
XP_023542749.1 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 457 bits (1175), Expect = 9.07e-162
Identity = 234/242 (96.69%), Postives = 234/242 (96.69%), Query Frame = 0
Query: 1 MSSLHFRPALVSPWKKKSNNNQFLSAVLNRTSPPSMAALPNSNHKPIFISHLLSFALSIT 60
MSSLHFRPALVSPWKKKSNNNQFLSAVLNRTSPPSMAALPNSNHKPIFISHLLSFALSIT
Sbjct: 1 MSSLHFRPALVSPWKKKSNNNQFLSAVLNRTSPPSMAALPNSNHKPIFISHLLSFALSIT 60
Query: 61 LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSINPSCVSTNPKSSS 120
LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSINPSCVSTNPKSSS
Sbjct: 61 LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSINPSCVSTNPKSSS 120
Query: 121 FAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPY--------GQYMEAEVDGNF 180
FAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPY GQYMEAEVDGNF
Sbjct: 121 FAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYEILMQEHAGQYMEAEVDGNF 180
Query: 181 GRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESM 234
GRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESM
Sbjct: 181 GRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESM 240
BLAST of Cp4.1LG09g09640 vs. NCBI nr
Match:
XP_022955221.1 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 [Cucurbita moschata])
HSP 1 Score: 453 bits (1166), Expect = 1.60e-160
Identity = 229/234 (97.86%), Postives = 229/234 (97.86%), Query Frame = 0
Query: 1 MSSLHFRPALVSPWKKKSNNNQFLSAVLNRTSPPSMAALPNSNHKPIFISHLLSFALSIT 60
MSSLHFRPALVSPWKKK NNQFLSAVLNRTSPPSMAALPN NHKPIFISHLLSFALSIT
Sbjct: 1 MSSLHFRPALVSPWKKKKKNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60
Query: 61 LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSINPSCVSTNPKSSS 120
LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPS NPSCVSTNPKSSS
Sbjct: 61 LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS 120
Query: 121 FAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180
FAF LSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL
Sbjct: 121 FAFSLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180
Query: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234
VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD
Sbjct: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234
BLAST of Cp4.1LG09g09640 vs. ExPASy TrEMBL
Match:
A0A6J1K581 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111490170 PE=4 SV=1)
HSP 1 Score: 457 bits (1177), Expect = 1.63e-162
Identity = 230/234 (98.29%), Postives = 231/234 (98.72%), Query Frame = 0
Query: 1 MSSLHFRPALVSPWKKKSNNNQFLSAVLNRTSPPSMAALPNSNHKPIFISHLLSFALSIT 60
MSSLHFRPALVSPWKK +NNNQFLSAVLNRTSPPSMAALPN NHKPIFISHLLSFALSIT
Sbjct: 1 MSSLHFRPALVSPWKKNNNNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60
Query: 61 LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSINPSCVSTNPKSSS 120
LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKD PIGLENGKIRPCPSINPSCVSTNPKSSS
Sbjct: 61 LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDFPIGLENGKIRPCPSINPSCVSTNPKSSS 120
Query: 121 FAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180
FAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL
Sbjct: 121 FAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180
Query: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234
VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD
Sbjct: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234
BLAST of Cp4.1LG09g09640 vs. ExPASy TrEMBL
Match:
A0A6J1GT70 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457250 PE=4 SV=1)
HSP 1 Score: 453 bits (1166), Expect = 7.74e-161
Identity = 229/234 (97.86%), Postives = 229/234 (97.86%), Query Frame = 0
Query: 1 MSSLHFRPALVSPWKKKSNNNQFLSAVLNRTSPPSMAALPNSNHKPIFISHLLSFALSIT 60
MSSLHFRPALVSPWKKK NNQFLSAVLNRTSPPSMAALPN NHKPIFISHLLSFALSIT
Sbjct: 1 MSSLHFRPALVSPWKKKKKNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60
Query: 61 LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSINPSCVSTNPKSSS 120
LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPS NPSCVSTNPKSSS
Sbjct: 61 LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS 120
Query: 121 FAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180
FAF LSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL
Sbjct: 121 FAFSLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180
Query: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234
VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD
Sbjct: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234
BLAST of Cp4.1LG09g09640 vs. ExPASy TrEMBL
Match:
A0A6J1JVV7 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111490170 PE=4 SV=1)
HSP 1 Score: 448 bits (1153), Expect = 1.19e-158
Identity = 230/247 (93.12%), Postives = 231/247 (93.52%), Query Frame = 0
Query: 1 MSSLHFRPALVSPWKKKSNNNQFLSAVLNRTSPPSMAALPNSNHKPIFISHLLSFALSIT 60
MSSLHFRPALVSPWKK +NNNQFLSAVLNRTSPPSMAALPN NHKPIFISHLLSFALSIT
Sbjct: 1 MSSLHFRPALVSPWKKNNNNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60
Query: 61 LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSINPSCVSTNPKSSS 120
LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKD PIGLENGKIRPCPSINPSCVSTNPKSSS
Sbjct: 61 LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDFPIGLENGKIRPCPSINPSCVSTNPKSSS 120
Query: 121 FAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPY-------------GQYMEAE 180
FAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPY GQYMEAE
Sbjct: 121 FAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYEILIQEHAFMIITGQYMEAE 180
Query: 181 VDGNFGRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSP 234
VDGNFGRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSP
Sbjct: 181 VDGNFGRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSP 240
BLAST of Cp4.1LG09g09640 vs. ExPASy TrEMBL
Match:
A0A6J1GUJ9 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111457250 PE=4 SV=1)
HSP 1 Score: 446 bits (1147), Expect = 8.15e-158
Identity = 229/242 (94.63%), Postives = 229/242 (94.63%), Query Frame = 0
Query: 1 MSSLHFRPALVSPWKKKSNNNQFLSAVLNRTSPPSMAALPNSNHKPIFISHLLSFALSIT 60
MSSLHFRPALVSPWKKK NNQFLSAVLNRTSPPSMAALPN NHKPIFISHLLSFALSIT
Sbjct: 1 MSSLHFRPALVSPWKKKKKNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60
Query: 61 LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSINPSCVSTNPKSSS 120
LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPS NPSCVSTNPKSSS
Sbjct: 61 LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS 120
Query: 121 FAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPY--------GQYMEAEVDGNF 180
FAF LSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPY GQYMEAEVDGNF
Sbjct: 121 FAFSLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYEILIQEHAGQYMEAEVDGNF 180
Query: 181 GRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESM 234
GRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESM
Sbjct: 181 GRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESM 240
BLAST of Cp4.1LG09g09640 vs. ExPASy TrEMBL
Match:
A0A5A7UK02 (Thylakoid lumenal 17.9 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G004760 PE=4 SV=1)
HSP 1 Score: 388 bits (997), Expect = 4.27e-135
Identity = 198/237 (83.54%), Postives = 213/237 (89.87%), Query Frame = 0
Query: 1 MSSLHFRPALVSPWKKKSNNN---QFLSAVLNRTSPPSMAALPNSNHKPIFISHLLSFAL 60
MSSL FRP LVSPWKKK NNN Q+ S V S PSM+AL N NHKPIF+SHLLSFAL
Sbjct: 1 MSSLQFRPLLVSPWKKKDNNNNKNQYHSPV----SVPSMSALQNVNHKPIFLSHLLSFAL 60
Query: 61 SITLTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSINPSCVSTNPK 120
SITLTSPFPS+AIPS NSLSSPLSPTTPFSQSK+LP GLENGKI PCPS NPSCVSTNPK
Sbjct: 61 SITLTSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPK 120
Query: 121 SSSFAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVI 180
SSSFAFPL+IP++F+GNPIQKLQE ILETQRN KIQMVEDTPYGQY+EAEVDGNFGRDVI
Sbjct: 121 SSSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVI 180
Query: 181 EFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234
EFLV+GDVAAYRIMA KVTYVYPFTTALGDSKGQEERM+KII++L WYSPTF+SM D
Sbjct: 181 EFLVKGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
BLAST of Cp4.1LG09g09640 vs. TAIR 10
Match:
AT4G24930.1 (thylakoid lumenal 17.9 kDa protein, chloroplast )
HSP 1 Score: 243.0 bits (619), Expect = 2.3e-64
Identity = 131/206 (63.59%), Postives = 162/206 (78.64%), Query Frame = 0
Query: 28 LNRTSPPSMAALPNSNHKPIFISHLLSFALSITLTSPFPSLAIPSFNSLSSPLSPTTPFS 87
L+ TSPP ++ LP L+SFAL+I+LTS P+LAIPS +S S PL TTPF+
Sbjct: 33 LSSTSPP-ISLLPK----------LISFALAISLTSFSPALAIPSLSS-SQPL--TTPFT 92
Query: 88 QSKDLPIGLENGKIRPCPSINPSCVSTNPKSSSFAFPLSIPESFTGNPIQKLQEVILETQ 147
QSK + GL NGKIRPCPS NP CVSTNP SSSF+FPL+IPE+ T +PI+KL+E I+ TQ
Sbjct: 93 QSKFVQTGLLNGKIRPCPSTNPGCVSTNPTSSSFSFPLTIPETDTQDPIEKLKEAIMSTQ 152
Query: 148 RNAKIQMVEDTPYGQYMEAEVD-GNFGRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALG 207
+N K ++EDTPYG+Y+EAEV+ G F RDV+EFLV+ DV AYR MA KVT+VYPFTTA G
Sbjct: 153 KNPKFVVLEDTPYGRYVEAEVEGGGFSRDVMEFLVKQDVVAYRCMATKVTFVYPFTTAFG 212
Query: 208 DSKGQEERMKKIIEELDWYSPTFESM 233
DSKGQEER+KK+I++L WY+PTFESM
Sbjct: 213 DSKGQEERLKKLIDQLGWYAPTFESM 224
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Q9SW33 | 3.3e-63 | 63.59 | Thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=370... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_023542750.1 | 8.60e-165 | 100.00 | thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 [Cucurbita pepo sub... | [more] |
| KAG7012320.1 | 3.36e-162 | 98.29 | Thylakoid lumenal 17.9 kDa protein, chloroplastic, partial [Cucurbita argyrosper... | [more] |
| XP_022994453.1 | 3.36e-162 | 98.29 | thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 [Cucurbita maxima] | [more] |
| XP_023542749.1 | 9.07e-162 | 96.69 | thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X1 [Cucurbita pepo sub... | [more] |
| XP_022955221.1 | 1.60e-160 | 97.86 | thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 [Cucurbita moschata... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1K581 | 1.63e-162 | 98.29 | thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 OS=Cucurbita maxima... | [more] |
| A0A6J1GT70 | 7.74e-161 | 97.86 | thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 OS=Cucurbita moscha... | [more] |
| A0A6J1JVV7 | 1.19e-158 | 93.12 | thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X1 OS=Cucurbita maxima... | [more] |
| A0A6J1GUJ9 | 8.15e-158 | 94.63 | thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X1 OS=Cucurbita moscha... | [more] |
| A0A5A7UK02 | 4.27e-135 | 83.54 | Thylakoid lumenal 17.9 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E56... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT4G24930.1 | 2.3e-64 | 63.59 | thylakoid lumenal 17.9 kDa protein, chloroplast | [more] |
