Cp4.1LG09g08200 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG09g08200
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptionethylene-responsive transcription factor 11-like
LocationCp4.1LG09: 7640835 .. 7641960 (+)
RNA-Seq ExpressionCp4.1LG09g08200
SyntenyCp4.1LG09g08200
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTGGTCGGTAACTCCCTTGTGTGGGACCCACCAAGCGCCTCAAATTCCATCCAAAACGCGGGGGCCTCAATTACAACGCAACCAAACAAAACGCCACTTCCTTTTACATAAATTATTTTTTTAATACAAAAAAATAAAAAAAAAAACGTGTCATATTTACAATTTCGTCCTACGTTTTTCATCTTAATCCCCAAATTACCCCTCCCATCGCCTCCATGGTTTGCATGGGATTCCGCTGTTGAATCTCAACCGTTGGATAACGCGACAAAATAAACCAGATGATGTTTGATCTGAATGACGTGGTCGGCTTACTACATGCCACGTAGCATGTGGACACCATTCCCAGCAGTCAAAATCTCTCCTTTTCCCTTTTCACTCTCTCCAATCCATCACTCCGATTTCCGCTTCTATAAATACCCAAATCCTTCCCTTCCCAATTTCATCTTTCAACAAAGCAAATCAATCCCATCGCCATTTTCTCCATCAACTACGTAATCTATGGCGCCAAGGGACAAGCTTAAGGCGGCGGCGGTGGTGGTTGCCGGCGGCAAGGACAAGGAGGTGCATTTTAGAGGCGTCAGGAAGAGGCCGTGGGGAAGATACGCCGCAGAAATTAGAGATCCAGCAAAAAAAACCCGTGTTTGGTTAGGCACATTCGACACGGCGGAGGAGGCGGCGAGGGCTTACGACGCCGCCGCTCGTCAATTCCGTGGCGCTAAGGCTAAAACTAATTTCCCCTTTCCCGTTGCTGTTAATGATCTTAATCTCAGTCCTAGCCGGAGTAGTACCGTTGAATCCTCTAGCCGTGACCCAATTCTTGACCTGAATCATGACGCTGTCGGATCTAGACCGGCGTTTCCGTTCAATCATCCTCAATTTGGAGGTGGGATTTTTCCGCCGCCGAATCATCTCCTGTTCTTTGATCATCCCATTTTTAGTATTCAAAATCATCAATCGGGTGTGGTTTTTGATCGCCACCGGCAGAAGGTAGTGGCGAGTGGCGGAGTTCAGAGTGACTCTGATTCATCCTCTGTTATTGATCTGAACCAAAACGACCACCACAAATCAAGACCGGTAGTTCTAGATCTCGATCTCAATTTCCCACCACCGGAATCCGCTTAG

mRNA sequence

ATGCTTGGTCGCCGTGACCCAATTCTTGACCTGAATCATGACGCTGTCGGATCTAGACCGGCGTTTCCGTTCAATCATCCTCAATTTGGAGGTGGGATTTTTCCGCCGCCGAATCATCTCCTGTTCTTTGATCATCCCATTTTTAGTATTCAAAATCATCAATCGGGTGTGGTTTTTGATCGCCACCGGCAGAAGGTAGTGGCGAGTGGCGGAGTTCAGAGTGACTCTGATTCATCCTCTGTTATTGATCTGAACCAAAACGACCACCACAAATCAAGACCGGTAGTTCTAGATCTCGATCTCAATTTCCCACCACCGGAATCCGCTTAG

Coding sequence (CDS)

ATGCTTGGTCGCCGTGACCCAATTCTTGACCTGAATCATGACGCTGTCGGATCTAGACCGGCGTTTCCGTTCAATCATCCTCAATTTGGAGGTGGGATTTTTCCGCCGCCGAATCATCTCCTGTTCTTTGATCATCCCATTTTTAGTATTCAAAATCATCAATCGGGTGTGGTTTTTGATCGCCACCGGCAGAAGGTAGTGGCGAGTGGCGGAGTTCAGAGTGACTCTGATTCATCCTCTGTTATTGATCTGAACCAAAACGACCACCACAAATCAAGACCGGTAGTTCTAGATCTCGATCTCAATTTCCCACCACCGGAATCCGCTTAG

Protein sequence

MLGRRDPILDLNHDAVGSRPAFPFNHPQFGGGIFPPPNHLLFFDHPIFSIQNHQSGVVFDRHRQKVVASGGVQSDSDSSSVIDLNQNDHHKSRPVVLDLDLNFPPPESA
Homology
[Close]
BLAST of Cp4.1LG09g08200 vs. NCBI nr
Match: XP_023542234.1 (ethylene-responsive transcription factor 11-like [Cucurbita pepo subsp. pepo] >KAG6573286.1 Ethylene-responsive transcription factor 9, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012451.1 Ethylene-responsive transcription factor 9, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 223 bits (569), Expect = 3.47e-72
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 5   RDPILDLNHDAVGSRPAFPFNHPQFGGGIFPPPNHLLFFDHPIFSIQNHQSGVVFDRHRQ 64
           RDPILDLNHDAVGSRPAFPFNHPQFGGGIFPPPNHLLFFDHPIFSIQNHQSGVVFDRHRQ
Sbjct: 103 RDPILDLNHDAVGSRPAFPFNHPQFGGGIFPPPNHLLFFDHPIFSIQNHQSGVVFDRHRQ 162

Query: 65  KVVASGGVQSDSDSSSVIDLNQNDHHKSRPVVLDLDLNFPPPESA 109
           KVVASGGVQSDSDSSSVIDLNQNDHHKSRPVVLDLDLNFPPPESA
Sbjct: 163 KVVASGGVQSDSDSSSVIDLNQNDHHKSRPVVLDLDLNFPPPESA 207

[Close]
BLAST of Cp4.1LG09g08200 vs. NCBI nr
Match: XP_022955196.1 (ethylene-responsive transcription factor 11-like [Cucurbita moschata])

HSP 1 Score: 223 bits (569), Expect = 3.47e-72
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 5   RDPILDLNHDAVGSRPAFPFNHPQFGGGIFPPPNHLLFFDHPIFSIQNHQSGVVFDRHRQ 64
           RDPILDLNHDAVGSRPAFPFNHPQFGGGIFPPPNHLLFFDHPIFSIQNHQSGVVFDRHRQ
Sbjct: 103 RDPILDLNHDAVGSRPAFPFNHPQFGGGIFPPPNHLLFFDHPIFSIQNHQSGVVFDRHRQ 162

Query: 65  KVVASGGVQSDSDSSSVIDLNQNDHHKSRPVVLDLDLNFPPPESA 109
           KVVASGGVQSDSDSSSVIDLNQNDHHKSRPVVLDLDLNFPPPESA
Sbjct: 163 KVVASGGVQSDSDSSSVIDLNQNDHHKSRPVVLDLDLNFPPPESA 207

[Close]
BLAST of Cp4.1LG09g08200 vs. NCBI nr
Match: XP_022994473.1 (ethylene-responsive transcription factor 11-like [Cucurbita maxima])

HSP 1 Score: 223 bits (568), Expect = 4.92e-72
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 5   RDPILDLNHDAVGSRPAFPFNHPQFGGGIFPPPNHLLFFDHPIFSIQNHQSGVVFDRHRQ 64
           RDPILDLNHDAVGSRPAFPFNHPQFGGGIFPPPNHLLFFDHPIFSIQNHQSGV+FDRHRQ
Sbjct: 103 RDPILDLNHDAVGSRPAFPFNHPQFGGGIFPPPNHLLFFDHPIFSIQNHQSGVIFDRHRQ 162

Query: 65  KVVASGGVQSDSDSSSVIDLNQNDHHKSRPVVLDLDLNFPPPESA 109
           KVVASGGVQSDSDSSSVIDLNQNDHHKSRPVVLDLDLNFPPPESA
Sbjct: 163 KVVASGGVQSDSDSSSVIDLNQNDHHKSRPVVLDLDLNFPPPESA 207

[Close]
BLAST of Cp4.1LG09g08200 vs. NCBI nr
Match: XP_038893987.1 (ethylene-responsive transcription factor 4 [Benincasa hispida])

HSP 1 Score: 147 bits (372), Expect = 2.67e-42
Identity = 78/106 (73.58%), Postives = 82/106 (77.36%), Query Frame = 0 

Query: 5   RDPI-LDLNHDAVGSRPAFPFNHPQFGGGIFPPPNHLLFFDHPIFSIQNHQSGVVFDRHR 64
           RDP   DLN DA GSRP FPF+HPQFGGGIFP PN   F DHPIF      SGV+FDRHR
Sbjct: 102 RDPTDFDLNQDAAGSRPPFPFHHPQFGGGIFPQPNQFHFLDHPIFR-NGMNSGVIFDRHR 161

Query: 65  QKVVASGGVQSDSDSSSVIDLNQNDHHKSRPVVLDLDLNFPPPESA 109
            K V  GGVQSDSDSSSVI+LNQND  KSRPV LDLDLNFPPP+SA
Sbjct: 162 LKTVQCGGVQSDSDSSSVINLNQNDQ-KSRPV-LDLDLNFPPPDSA 204

[Close]
BLAST of Cp4.1LG09g08200 vs. NCBI nr
Match: XP_023001752.1 (ethylene-responsive transcription factor 8-like [Cucurbita maxima])

HSP 1 Score: 132 bits (333), Expect = 2.07e-36
Identity = 74/114 (64.91%), Postives = 78/114 (68.42%), Query Frame = 0 

Query: 6   DPILDLNHD----AVGSRPAFPFNHPQFGGGIFPPPNHLLFFDHPIFS------IQNHQS 65
           DP LDLNH+    A GS P FPF       GIFPPPNHL  FDHPIF       + NHQS
Sbjct: 99  DPTLDLNHEPDAIAAGSTPPFPF-------GIFPPPNHLFLFDHPIFRHGMVEILHNHQS 158

Query: 66  GVVFDRHRQKVVASGGVQSDSDSSSVIDLNQNDHHKSRPVVLDLDLNFPPPESA 109
              FDR  QK V +GGVQSDSDSSSV +LNQNDH KSRP  LDLDLNFPPPESA
Sbjct: 159 AASFDRRHQKTVPNGGVQSDSDSSSVSNLNQNDH-KSRPT-LDLDLNFPPPESA 203

[Close]
BLAST of Cp4.1LG09g08200 vs. ExPASy TrEMBL
Match: A0A6J1GT40 (ethylene-responsive transcription factor 11-like OS=Cucurbita moschata OX=3662 GN=LOC111457236 PE=4 SV=1)

HSP 1 Score: 223 bits (569), Expect = 1.68e-72
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 5   RDPILDLNHDAVGSRPAFPFNHPQFGGGIFPPPNHLLFFDHPIFSIQNHQSGVVFDRHRQ 64
           RDPILDLNHDAVGSRPAFPFNHPQFGGGIFPPPNHLLFFDHPIFSIQNHQSGVVFDRHRQ
Sbjct: 103 RDPILDLNHDAVGSRPAFPFNHPQFGGGIFPPPNHLLFFDHPIFSIQNHQSGVVFDRHRQ 162

Query: 65  KVVASGGVQSDSDSSSVIDLNQNDHHKSRPVVLDLDLNFPPPESA 109
           KVVASGGVQSDSDSSSVIDLNQNDHHKSRPVVLDLDLNFPPPESA
Sbjct: 163 KVVASGGVQSDSDSSSVIDLNQNDHHKSRPVVLDLDLNFPPPESA 207

[Close]
BLAST of Cp4.1LG09g08200 vs. ExPASy TrEMBL
Match: A0A6J1K5A0 (ethylene-responsive transcription factor 11-like OS=Cucurbita maxima OX=3661 GN=LOC111490184 PE=4 SV=1)

HSP 1 Score: 223 bits (568), Expect = 2.38e-72
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 5   RDPILDLNHDAVGSRPAFPFNHPQFGGGIFPPPNHLLFFDHPIFSIQNHQSGVVFDRHRQ 64
           RDPILDLNHDAVGSRPAFPFNHPQFGGGIFPPPNHLLFFDHPIFSIQNHQSGV+FDRHRQ
Sbjct: 103 RDPILDLNHDAVGSRPAFPFNHPQFGGGIFPPPNHLLFFDHPIFSIQNHQSGVIFDRHRQ 162

Query: 65  KVVASGGVQSDSDSSSVIDLNQNDHHKSRPVVLDLDLNFPPPESA 109
           KVVASGGVQSDSDSSSVIDLNQNDHHKSRPVVLDLDLNFPPPESA
Sbjct: 163 KVVASGGVQSDSDSSSVIDLNQNDHHKSRPVVLDLDLNFPPPESA 207

[Close]
BLAST of Cp4.1LG09g08200 vs. ExPASy TrEMBL
Match: A0A6J1KHI4 (ethylene-responsive transcription factor 8-like OS=Cucurbita maxima OX=3661 GN=LOC111495795 PE=4 SV=1)

HSP 1 Score: 132 bits (333), Expect = 1.00e-36
Identity = 74/114 (64.91%), Postives = 78/114 (68.42%), Query Frame = 0 

Query: 6   DPILDLNHD----AVGSRPAFPFNHPQFGGGIFPPPNHLLFFDHPIFS------IQNHQS 65
           DP LDLNH+    A GS P FPF       GIFPPPNHL  FDHPIF       + NHQS
Sbjct: 99  DPTLDLNHEPDAIAAGSTPPFPF-------GIFPPPNHLFLFDHPIFRHGMVEILHNHQS 158

Query: 66  GVVFDRHRQKVVASGGVQSDSDSSSVIDLNQNDHHKSRPVVLDLDLNFPPPESA 109
              FDR  QK V +GGVQSDSDSSSV +LNQNDH KSRP  LDLDLNFPPPESA
Sbjct: 159 AASFDRRHQKTVPNGGVQSDSDSSSVSNLNQNDH-KSRPT-LDLDLNFPPPESA 203

[Close]
BLAST of Cp4.1LG09g08200 vs. ExPASy TrEMBL
Match: A0A5A7UPH8 (Ethylene-responsive transcription factor 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold861G001010 PE=4 SV=1)

HSP 1 Score: 132 bits (331), Expect = 2.50e-36
Identity = 74/108 (68.52%), Postives = 79/108 (73.15%), Query Frame = 0 

Query: 5   RDPI-LDLNHDAVGSRPAFPFNHPQFGGGIFPPP-NHLLFFDHPIFSIQNHQSGVVFDRH 64
           RDP   DLN DA GSRP FP    QFGGGIFP   N   F DHPIF     +SGV++DRH
Sbjct: 106 RDPTDFDLNQDASGSRPPFPSQQHQFGGGIFPQQSNQFRFLDHPIFR-NGTESGVIYDRH 165

Query: 65  RQK-VVASGGVQSDSDSSSVIDLNQNDHHKSRPVVLDLDLNFPPPESA 109
           R K VV  GGVQSDSDSSSVI+LNQND HKSRP  LDLDLNFPPP+SA
Sbjct: 166 RVKAVVQCGGVQSDSDSSSVINLNQNDDHKSRPA-LDLDLNFPPPDSA 211

[Close]
BLAST of Cp4.1LG09g08200 vs. ExPASy TrEMBL
Match: A0A1S3B6N3 (ethylene-responsive transcription factor 8 OS=Cucumis melo OX=3656 GN=LOC103486594 PE=4 SV=1)

HSP 1 Score: 132 bits (331), Expect = 2.50e-36
Identity = 74/108 (68.52%), Postives = 79/108 (73.15%), Query Frame = 0 

Query: 5   RDPI-LDLNHDAVGSRPAFPFNHPQFGGGIFPPP-NHLLFFDHPIFSIQNHQSGVVFDRH 64
           RDP   DLN DA GSRP FP    QFGGGIFP   N   F DHPIF     +SGV++DRH
Sbjct: 106 RDPTDFDLNQDASGSRPPFPSQQHQFGGGIFPQQSNQFRFLDHPIFR-NGTESGVIYDRH 165

Query: 65  RQK-VVASGGVQSDSDSSSVIDLNQNDHHKSRPVVLDLDLNFPPPESA 109
           R K VV  GGVQSDSDSSSVI+LNQND HKSRP  LDLDLNFPPP+SA
Sbjct: 166 RVKAVVQCGGVQSDSDSSSVINLNQNDDHKSRPA-LDLDLNFPPPDSA 211

The following BLAST results are available for this feature:
BLAST of Cp4.1LG09g08200 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG09g08200 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023542234.13.47e-72100.00ethylene-responsive transcription factor 11-like [Cucurbita pepo subsp. pepo] >K... [more]
XP_022955196.13.47e-72100.00ethylene-responsive transcription factor 11-like [Cucurbita moschata][more]
XP_022994473.14.92e-7299.05ethylene-responsive transcription factor 11-like [Cucurbita maxima][more]
XP_038893987.12.67e-4273.58ethylene-responsive transcription factor 4 [Benincasa hispida][more]
XP_023001752.12.07e-3664.91ethylene-responsive transcription factor 8-like [Cucurbita maxima][more]
BLAST of Cp4.1LG09g08200 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GT401.68e-72100.00ethylene-responsive transcription factor 11-like OS=Cucurbita moschata OX=3662 G... [more]
A0A6J1K5A02.38e-7299.05ethylene-responsive transcription factor 11-like OS=Cucurbita maxima OX=3661 GN=... [more]
A0A6J1KHI41.00e-3664.91ethylene-responsive transcription factor 8-like OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A5A7UPH82.50e-3668.52Ethylene-responsive transcription factor 8 OS=Cucumis melo var. makuwa OX=119469... [more]
A0A1S3B6N32.50e-3668.52ethylene-responsive transcription factor 8 OS=Cucumis melo OX=3656 GN=LOC1034865... [more]
BLAST of Cp4.1LG09g08200 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG09g08200.1Cp4.1LG09g08200.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 DNA-binding transcription factor activity