Cp4.1LG09g07090 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG09g07090
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	primase homolog protein-like isoform X1
Location	Cp4.1LG09: 6371301 .. 6377176 (+)
RNA-Seq Expression	Cp4.1LG09g07090
Synteny	Cp4.1LG09g07090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGCTCTTTCTCCTACTCCGCCGTCGCCATCGCCACCACCAGGTACTTAATCGTTTCGACCTTGTTATAATACTCTTTTGCTTTGTTTACGGTTTTAGGGTTAATGTTATGGGCGAATCTAAAGTGAAGGTTCTAATGGAGAAAATGGATCTTATCGGAATAGTCTGTGATGAACATTGTACTCCTGGAAAATACTATTGCCTGCTCTGTCCCAAGGTTATCTGCTCCTCCCGTCCATGCCTTTCGTGGTTTCTATACATGAAAATCAAATCCATATTCTTGTTTTGATGGTTGAACAGTGCAAGGGTGGGCGCTTAATGGAGAGGAGCTTATCTCTACATGTAATTCCAACAGGGTAAGTGATTATTACTGTTTTTCCCTTGATTTTATGAGGATTGATTGGCAGTACATTGTTTATGAATTACATTTTGTTATTGGGAACAGAGATTTTGCAATGTGGAGGTGTTTCCAGTCTGAGTGTGGTTGGGCAGGCCGGGTAACGTCATATTAATATGTTCAATCTCTTATTTAACAATTAACACATGAGAATTTCTTAGCCGAATGATTGTTTGGTTTAGATATTTGCAGATGGCAGATTGGCGTTTAATGAATTCAGCAGAACTGCGAAGTTGTTTGGAGGAACTGTGAAGAAGAGTCTTATTTTGGAGCCTCTTGGTGATGAGGTACTTCGAATTTCATTGCATTTCTATGTATAAGACACACTTAGACTAATACGTTAGTTCTGAGACCCCACAATGGTTGGAGAGGAAATCTCTCCATAGTAGACGCGTTTTAAAACTGTAAGGCTGACGGCGATACGTAACGGGCTAAAAGGACAATGTTTGCTAGCGGTGGGCTTGGGCTGTTACAAATGGTATTAGAGCTAGACACCAGGTGGTGTGCTAGTGAGGACATTGGGCTCCCAAGGAGGGTGGATTGTGAGATCTCACATCGGTTGAAGAGGAGAACGAAGCATTGCTTATAAGGGTGTGGAAACCTCTTCCTACCAGACGTGTTTTAAAAACCTTGAGGGGAAGCCTAGGAGGGATAGCCCAAGAGGACAATATTAGAGCCAGACACCAGGTGGTGTGCCAGTGAGGATACTGGGCCCCCAAGGGGGGTGGATTGTGAGATCTCACATCGGTTGGAGAGGAGAACGAAACATTGCTTATAAGGGTGTGAAAACCTCTCCCTACCAGATGCGATTTAAAAACCTTGAGGGATAGCCCAAAGAGGACAATATTTGCTAGTGGTGGAATTGGACTGTAACAAATGGTATCAGAGCCAGACAATAGGCAGTGTGCCAGCGAGGACGATGGGCCTCAAGGGGGGTAGATTGTGAGATCCCACATCGATTGGAGAGGAAAACGAAGTATTCCTTATAAGGGTATGGAAACCTTTCCCTAGTAGACGTGTTTTAAAATTGTAAGGCTGATGGTGATATAATGGGCCAAAATGAACAATATCTGCTAGGGGTGTGCTTGGGCTTGGGCTGATATTAGTATTGTTTGAATGGGTTAACTTGTGCTGTCAAGAATGGGTTAACTTGTGCAATCTTTTGACAGAACCACGGTTAATTTTGATTGCTAGGTAGTCCTACATGTTACGATGAATAAGACTAGGAAGACTTTTGATCTTAATGCAAACTGTTGAATTTATCTTTGAATTTGAGGTTCAAGTGTTTTGATGTTTCGTTTTCAGCTAATCACTTACTTCAGCAAGAGAATGATATCCCAGGAAACTCTCAAAAGGAATGTTGTTATGCAAACAGCTGATCGTCAGGTACCTGAAAGAATGCTTTTGTTTGTATGCCTTTCATTGAATTTTTAGACTCGTACCCTTGTGGATGCAATACTGCCCAGAAGTTATGTAACAGCCCAAGCCCAAGCCCAAGCTCACTGCTAGTTGATATTATCCTCTTTTGACTTTCCCTTTCGAGCTTCCTCTCAAGGTTTTTAAAACGTGTTTGCAAGGGAGAGCTTTCCACACCCATATAAAAATGTTTCGTTCTCCTCCACAATCAATGTGGGATCTCAATCCACCCCCCTTCGGGGCCCAGCGTCCTCGCTGCACTTGTTCCCTTCTCCAATCGATGTGGGACCCCCCAATCCACCATCTTTCGGGGCCCAACGTCCTTGCTGGTACACCACCTCGTGCACACCTCCTTCAGGGCTTAGCCTCTTCACTGACACATCGCCCAGTGTCTGGCTCTAATACCATTTGTAATAGCTCAAGCCCACCGCTAGCAAATATTGTCTTCTTTAGGTTTTCCTTTTCAGGCTTCCCCTCAAGGTTTTTTAAAACGTAGGGAGAGGTCTCCACACCCTTGTAAAAAATGCTTCGTTCTCCTCTCCAACCGATGTGGGATCTCACAAGCGCGTCTCTCTCATTTCCTTGTAGCTTCAACTTGTGACTAGTTTAAAGGTCACTTGCAGGCTGCAATTGCATTCACTTATCGACAAAACGGACAGCTCGTTGGCTGTAAGTACCGAACCATAAACAAGAAATTTTGGCAGGTACATTAATCAATCCTTCTTCAATCAGAGTTATTTTAGAAACTGTCCAGCATCTTCCTGTTCTTCGGCTTGTAATTCTAAGCGTTTCTAAGCTTTCTAATCTGTATGTCTGATATCAATATTCAGGCGAAGGGCACAGAAAAATTGTTTTATGGGATTGATGATATTAATGATGCAGATGAACTCATCATTGTATGAATTCACAATACCTTGTTTTGTAAGTTTGTATTTTATATTTTGATCTATTTTTCCATCGATTTTTGATAATGTTGTGTATGTCGATTAAGGTCGAAGGTGAAATGGATAAACTTTCAGTAGAAGAAGCTGGCTTCCTGAATTGTATCAGTGTTCCTGGTGGTGCCCCAACTAAGGTTTCAACTAATGCAGTAGCATCAATTCAAAAGGTTCTGTGTTATAGAAATTCATTTATGCCTATCTTGTTTGCTTTTACATCATTCCTAGCTATCTGAGTTATGCTACTAAACTATTTCCCTCTTCCCTCGATCCCACATTGGTTGGAGAGGGGAACGAATCATTCTTTATAAGGGTGTGGCAACCTTTCCCTAGCAGAAGCGTTTTAAAAGCTTGGGTTGTTACAAATGGTATTAGAGCCAGACACCGGGCGATGTGTCAGCGAAGAGGTTGAGCCCTGAAGGGGGGTGAAGCCAGCAAGGACGTTGGACCCCGAACTGGGTGGATTGGGGGGTCTCATATCGATTGGAGAAGGGAACGAGTGCCAGCGACGACGCTGGCCCCAAAGGGGGATGGATCGTGAGATCCCACATTGGAAACATTTTTTATAAGGGTGTGGAAACCTCTCCCTAACAGACGTTTTAAAATCTTGAGGGGAAGCCCAGAAAGAAAAACCCAAAAAGGACAATATCTGCTAGTGGTGGGCTTGAGCTGTTACATTACGGAACTTGAAATGTGGTTTAAAATGGAGTAAAACACACCTTTGATACTCAAAGATTTAAATTTAGTATCTATTTAGTCATTTAGTTCTTGAAATTTGAATACGTTTCTATGTGTTTTGAGTTTCATTTTTAATAGATCTCGAAAGTTTGGAATTGGTTTCTAATTGGTCCTTCAGCGTAAAAAGTTAAAAACTTCAAATTTTAGAGACCAATTAGAAATTGGTTTCTAATTGGTCCTTCAGCGTAAAAAGTTAAAAACTTCAAATTTTAGAGACCAATTAGAAACTAGATTCAAAATTCGAGGATGAGAGTTTTAGGATTTCAAGGACCAGATAGAAACTAAATCTCAATCTAAAAAACTAGACGTGTAATGGTTCATCTTTAGAAAGTTACGACAAGAAGGGACACTAAAGCATCGTATAAGAAACGCTCTACACCCGTTTTCAACTAGAAACCAAAGATAAGAAGAACTGATTCTAAGTTAAAACTTTTGTGATAATATTAGGTTTAGCTATGATGATCATATATATTTTACAATTTATATGGTTTCACATGTCAGGATACTGCATATCAGTATTTATGGAGCTGCAAAGACTTGTTAGATAAGGTAAATAATATGGTCTGGTCCTGGTTTATTCTGGATTTTGAAAGTTTTTTAAAAGACCAAATAGTTATCAAATGGAGCCTTCATTAACGAGATTTTGCTGCTTTTTTTCTTTTATGTTAGAAATAAGCACGTTAACAGCTTCGTCGTTTTGTAATTTACGTTTTGAAAACGTGTTTTAAAGTTTGAAATACTAACAAAATTATTAACCTGAAAGGTTCCCCGGATTATATTGGCTACTGATAGTGATGAACCAGGGCAAGCTTTGGCAGAAGAGCTAGCACTTCGGCTTGGAAAACACAGGTCTCCACTCAGTTGTGAACTTTGTGTTAATCTTAACGCTTGATTTGTTTTTCATAAAGGCAAAATAACGTGGCTTTGTTGTTTTGGTTAACAGATGTTGGCGGGTAGATTGGCCTTATAAAGATGACTTCAACCGTTTTAAAGATGCCAATGAGGTTACATTCCTCCCTAAATTACTCTTTTAAGTTATTGTTTTTAGCTCAACAAGGTGGGATGGTGCTGTGCCGTAACGTCAAACCTTAATGCTCTGGTACTAAGTACCAATGGTATGATACCACTTGTTGTACTTAAATGGCAAAATCAAAATGTTCTGATACTCAATTATTGTTGCTGAGGCGGAAGCAAGACCGGTCGCACTCACACACCCACAAACAGAAATTAAACAAAGAGACACAAAAATTTACGTGGTTTGAAGAGAAGAAATTTCCCTACATCCACGGGTGATAGTCAATCACTATAACCAAAGTGTTTACAAGTGTATCTCTCGCACTCTTACACTACAAAGTCTCAGAACAAAGTTCTTCTCAATTGCCTCTAAGCAAATACAAAATGACAATAACTCCACACTTCAAAAGAATGCTAGACAAGCGTTTATATAGGCATCATGAACCAAATAAAAGAGAATATGAACAAAAGGGTTATAAACTAAATGAGAGTTAAGAACCAGGTGAAGTCGAGCATCCTAAAGCTAATTATAGATCATTATTCTATGAAGTACGTTTTATATTCTTACTATTTTGGTTGAAAATCTGGAAAACGGCAAGGATGCCAAAAAGAGGGCGGTTTCGTGTCGTTAATTCGAAGCTTGTTTCTTGGGATGATGATATTTATTTTGATCCTTTTGGCATTTGAATGTGTTATTACAAACAGATTCTGATGCAGTTGGGCGCAGATGCTTTAAAGAAAGCAATTGAAGATGCCAAGTCATATCAACTTTGTGATACACATCAAATACAAGTAGGTGGGTATCCAAATATTTCCAGAAAATTCCCATTTTTAAAATGTTTTTGATTTGGGTTTTGGTAATTATTTTGATGACCTTCCTCTCTTTTAACTTTGCAGAAGAGGACCTCGAGAGCTTCCACGAGCCTTCGTAACTATGGAGAATCATTTTGAGTGGTAATCGGTAACAATTAGATTCATAAATTACATGGAAATAAACGTTTCGTTCGTGCAGTGAAAACATTGATATTGACTTTGATTTTACTTTGAATTAAAATAAAAACTAAAGTTTTTATATTAAAGAAATATGACTTCCCTCGATCTTTGTTTAACCACACGCTCTATGGATTAAACATTCGACCTTATGGTTAATAGTCACATGCTCTCTAACCAACTGAATTACCCTTTTACTATACATATACAACTATTAAAAAGTTTCTAAACTACTGCTAAAAGAAAAGCTTGAGCCTTCAACCTTACTTGACTTGACAAATCTAAGAGCCACTTGCTATCATCACATGACTTTGCCCATCTCGGATTTGGACTCTCAAGGTCAATTCAAGCCCACCAAATGTCCCCGATAAACACCCATGAT

mRNA sequence

ATGCGCTCTTTCTCCTACTCCGCCGTCGCCATCGCCACCACCAGGGTTAATGTTATGGGCGAATCTAAAGTGAAGGTTCTAATGGAGAAAATGGATCTTATCGGAATAGTCTGTGATGAACATTGTACTCCTGGAAAATACTATTGCCTGCTCTGTCCCAAGTGCAAGGGTGGGCGCTTAATGGAGAGGAGCTTATCTCTACATGTAATTCCAACAGGAGATTTTGCAATGTGGAGGTGTTTCCAGTCTGAGTGTGGTTGGGCAGGCCGGATATTTGCAGATGGCAGATTGGCGTTTAATGAATTCAGCAGAACTGCGAAGTTGTTTGGAGGAACTGTGAAGAAGAGTCTTATTTTGGAGCCTCTTGGTGATGAGCTAATCACTTACTTCAGCAAGAGAATGATATCCCAGGAAACTCTCAAAAGGAATGTTGTTATGCAAACAGCTGATCGTCAGGCTGCAATTGCATTCACTTATCGACAAAACGGACAGCTCGTTGGCTGTAAGTACCGAACCATAAACAAGAAATTTTGGCAGGCGAAGGGCACAGAAAAATTGTTTTATGGGATTGATGATATTAATGATGCAGATGAACTCATCATTGTCGAAGGTGAAATGGATAAACTTTCAGTAGAAGAAGCTGGCTTCCTGAATTGTATCAGTGTTCCTGGTGGTGCCCCAACTAAGGTTTCAACTAATGCAGTAGCATCAATTCAAAAGGATACTGCATATCAGTATTTATGGAGCTGCAAAGACTTGTTAGATAAGGTTCCCCGGATTATATTGGCTACTGATAGTGATGAACCAGGGCAAGCTTTGGCAGAAGAGCTAGCACTTCGGCTTGGAAAACACAGATGTTGGCGGGTAGATTGGCCTTATAAAGATGACTTCAACCGTTTTAAAGATGCCAATGAGATTCTGATGCAGTTGGGCGCAGATGCTTTAAAGAAAGCAATTGAAGATGCCAAGTCATATCAACTTTGTGATACACATCAAATACAAGTAGAAGAGGACCTCGAGAGCTTCCACGAGCCTTCGTAACTATGGAGAATCATTTTGAGTGGTAATCGGTAACAATTAGATTCATAAATTACATGGAAATAAACGTTTCGTTCGTGCAGTGAAAACATTGATATTGACTTTGATTTTACTTTGAATTAAAATAAAAACTAAAGTTTTTATATTAAAGAAATATGACTTCCCTCGATCTTTGTTTAACCACACGCTCTATGGATTAAACATTCGACCTTATGGTTAATAGTCACATGCTCTCTAACCAACTGAATTACCCTTTTACTATACATATACAACTATTAAAAAGTTTCTAAACTACTGCTAAAAGAAAAGCTTGAGCCTTCAACCTTACTTGACTTGACAAATCTAAGAGCCACTTGCTATCATCACATGACTTTGCCCATCTCGGATTTGGACTCTCAAGGTCAATTCAAGCCCACCAAATGTCCCCGATAAACACCCATGAT

Coding sequence (CDS)

ATGCGCTCTTTCTCCTACTCCGCCGTCGCCATCGCCACCACCAGGGTTAATGTTATGGGCGAATCTAAAGTGAAGGTTCTAATGGAGAAAATGGATCTTATCGGAATAGTCTGTGATGAACATTGTACTCCTGGAAAATACTATTGCCTGCTCTGTCCCAAGTGCAAGGGTGGGCGCTTAATGGAGAGGAGCTTATCTCTACATGTAATTCCAACAGGAGATTTTGCAATGTGGAGGTGTTTCCAGTCTGAGTGTGGTTGGGCAGGCCGGATATTTGCAGATGGCAGATTGGCGTTTAATGAATTCAGCAGAACTGCGAAGTTGTTTGGAGGAACTGTGAAGAAGAGTCTTATTTTGGAGCCTCTTGGTGATGAGCTAATCACTTACTTCAGCAAGAGAATGATATCCCAGGAAACTCTCAAAAGGAATGTTGTTATGCAAACAGCTGATCGTCAGGCTGCAATTGCATTCACTTATCGACAAAACGGACAGCTCGTTGGCTGTAAGTACCGAACCATAAACAAGAAATTTTGGCAGGCGAAGGGCACAGAAAAATTGTTTTATGGGATTGATGATATTAATGATGCAGATGAACTCATCATTGTCGAAGGTGAAATGGATAAACTTTCAGTAGAAGAAGCTGGCTTCCTGAATTGTATCAGTGTTCCTGGTGGTGCCCCAACTAAGGTTTCAACTAATGCAGTAGCATCAATTCAAAAGGATACTGCATATCAGTATTTATGGAGCTGCAAAGACTTGTTAGATAAGGTTCCCCGGATTATATTGGCTACTGATAGTGATGAACCAGGGCAAGCTTTGGCAGAAGAGCTAGCACTTCGGCTTGGAAAACACAGATGTTGGCGGGTAGATTGGCCTTATAAAGATGACTTCAACCGTTTTAAAGATGCCAATGAGATTCTGATGCAGTTGGGCGCAGATGCTTTAAAGAAAGCAATTGAAGATGCCAAGTCATATCAACTTTGTGATACACATCAAATACAAGTAGAAGAGGACCTCGAGAGCTTCCACGAGCCTTCGTAA

Protein sequence

MRSFSYSAVAIATTRVNVMGESKVKVLMEKMDLIGIVCDEHCTPGKYYCLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNEFSRTAKLFGGTVKKSLILEPLGDELITYFSKRMISQETLKRNVVMQTADRQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPTKVSTNAVASIQKDTAYQYLWSCKDLLDKVPRIILATDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILMQLGADALKKAIEDAKSYQLCDTHQIQVEEDLESFHEPS

Homology

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BLAST of Cp4.1LG09g07090 vs. ExPASy Swiss-Prot
Match: B5X582 (Twinkle homolog protein, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g30680 PE=1 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 3.2e-83
Identity = 157/330 (47.58%), Postives = 214/330 (64.85%), Query Frame = 0


Query: 5   SYSAVAIATTRVNVMGESKVKVLMEKMDLIGI------VCDEHCTPGKYYCLLCPKCKGG 64
           SY+++    T V+   E+  +V++ ++  +        V  E+C PG++  L+CP C+GG
Sbjct: 83  SYNSIPRVPTPVDTEVEADKRVVLSRLVTLRRKLAEQGVDAENCPPGQHSGLICPTCEGG 142

Query: 65  RLMERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNEFSRTAKLFGGTVKKSLI 124
              E+SLSL + P G  A W CF+ +CG  G + ADG LA        K+      + + 
Sbjct: 143 NSGEKSLSLFIAPDGSSATWNCFRGKCGLKGGVRADGGLA--SADPIEKVERKITVEGIE 202

Query: 125 LEPLGDELITYFSKRMISQETLKRNVVMQ-TADRQAAIAFTYRQNGQLVGCKYRTINKKF 184
           LEPL DE+  YF+ R IS++TL+RN VMQ     +  IAFTY Q G+LV CKYR++ K F
Sbjct: 203 LEPLCDEIQDYFAARAISRKTLERNRVMQKRIGDEIVIAFTYWQRGELVSCKYRSLTKMF 262

Query: 185 WQAKGTEKLFYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPTKVSTNAVAS 244
           +Q + T ++ YG+DDI    E+IIVEGE+DKL++EEAGFLNC+SVP GAP KVS+  + S
Sbjct: 263 FQERKTRRILYGLDDIEKTSEVIIVEGEIDKLAMEEAGFLNCVSVPDGAPAKVSSKEIPS 322

Query: 245 IQKDTAYQYLWSCKDLLDKVPRIILATDSDEPGQALAEELALRLGKHRCWRVDWPYKDDF 304
             KDT Y++LW+C D L K  RI++ATD D PGQA+AEE+A RLGK RCWRV WP K + 
Sbjct: 323 EDKDTKYKFLWNCNDYLKKASRIVIATDGDGPGQAMAEEIARRLGKERCWRVKWPKKSED 382

Query: 305 NRFKDANEILMQLGADALKKAIEDAKSYQL 328
             FKDANE+LM  G   LK+AI DA+ Y +
Sbjct: 383 EHFKDANEVLMSKGPHLLKEAILDAEPYPI 410

[Close]

BLAST of Cp4.1LG09g07090 vs. ExPASy Swiss-Prot
Match: F4I6E6 (Primase homolog protein OS=Arabidopsis thaliana OX=3702 GN=At1g30660 PE=3 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 3.0e-81
Identity = 155/307 (50.49%), Postives = 203/307 (66.12%), Query Frame = 0


Query: 22  SKVKVLMEKMDLIGIVCDEHCTPGKYYCLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCF 81
           SK+  LM K+   GI   ++C PG   CL+CPKC+ G   E+SL+L++ P G  A W C 
Sbjct: 33  SKLVTLMRKLSEQGIDA-QNCPPGVRSCLICPKCEVGDSGEKSLTLYIYPDGSSAKWTC- 92

Query: 82  QSECGWAGRIFADGRLAFNEFSRTAKLFGGTVKKSLILEPLGDELITYFSKRMISQETLK 141
           + +CG  G +  DG+L   +     K+      +S+ LEPL DE+  +F+ R IS +TL+
Sbjct: 93  RRKCGLKGVLQVDGKLVSKD--PIGKVERKITVESIKLEPLCDEIQDFFAARAISGKTLE 152

Query: 142 RNVVMQ-TADRQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELI 201
           RN VMQ   D +  IAFTY Q G+LV CKYR++ KKF Q + T K+ YG+DDI +  E+I
Sbjct: 153 RNRVMQKRIDDEIVIAFTYWQRGELVSCKYRSLTKKFVQERNTRKILYGLDDIEETSEII 212

Query: 202 IVEGEMDKLSVEEAGFLNCISVPGGAPTKVSTNAVASIQKDTAYQYLWSCKDLLDKVPRI 261
           IVEGE DKL++EEAGF NC+SVP GAP  VS+  + S  KDTA++Y+W+C D L K  RI
Sbjct: 213 IVEGEPDKLAMEEAGFFNCVSVPDGAPETVSSKEIPSESKDTAFKYIWNCNDYLKKASRI 272

Query: 262 ILATDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILMQLGADALKKAIE 321
           ++ATD D PGQALAEELA RLGK RCW V WP K +   FKDANE+LM  G   LK+AI 
Sbjct: 273 VIATDGDGPGQALAEELARRLGKERCWLVKWPKKSEDEHFKDANEVLMSKGPHLLKEAIL 332

Query: 322 DAKSYQL 328
           +A+ Y L
Sbjct: 333 NAEPYPL 335

[Close]

BLAST of Cp4.1LG09g07090 vs. NCBI nr
Match: XP_023541322.1 (primase homolog protein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 665 bits (1716), Expect = 9.33e-240
Identity = 323/323 (100.00%), Postives = 323/323 (100.00%), Query Frame = 0


Query: 24  VKVLMEKMDLIGIVCDEHCTPGKYYCLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQS 83
           VKVLMEKMDLIGIVCDEHCTPGKYYCLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQS
Sbjct: 76  VKVLMEKMDLIGIVCDEHCTPGKYYCLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQS 135

Query: 84  ECGWAGRIFADGRLAFNEFSRTAKLFGGTVKKSLILEPLGDELITYFSKRMISQETLKRN 143
           ECGWAGRIFADGRLAFNEFSRTAKLFGGTVKKSLILEPLGDELITYFSKRMISQETLKRN
Sbjct: 136 ECGWAGRIFADGRLAFNEFSRTAKLFGGTVKKSLILEPLGDELITYFSKRMISQETLKRN 195

Query: 144 VVMQTADRQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVE 203
           VVMQTADRQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVE
Sbjct: 196 VVMQTADRQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVE 255

Query: 204 GEMDKLSVEEAGFLNCISVPGGAPTKVSTNAVASIQKDTAYQYLWSCKDLLDKVPRIILA 263
           GEMDKLSVEEAGFLNCISVPGGAPTKVSTNAVASIQKDTAYQYLWSCKDLLDKVPRIILA
Sbjct: 256 GEMDKLSVEEAGFLNCISVPGGAPTKVSTNAVASIQKDTAYQYLWSCKDLLDKVPRIILA 315

Query: 264 TDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILMQLGADALKKAIEDAK 323
           TDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILMQLGADALKKAIEDAK
Sbjct: 316 TDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILMQLGADALKKAIEDAK 375

Query: 324 SYQLCDTHQIQVEEDLESFHEPS 346
           SYQLCDTHQIQVEEDLESFHEPS
Sbjct: 376 SYQLCDTHQIQVEEDLESFHEPS 398

[Close]

BLAST of Cp4.1LG09g07090 vs. NCBI nr
Match: XP_022955059.1 (primase homolog protein-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 654 bits (1688), Expect = 1.48e-235
Identity = 318/323 (98.45%), Postives = 320/323 (99.07%), Query Frame = 0


Query: 24  VKVLMEKMDLIGIVCDEHCTPGKYYCLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQS 83
           VKVLMEKMDLIGIVCDE CTPGKYYCLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQS
Sbjct: 72  VKVLMEKMDLIGIVCDEQCTPGKYYCLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQS 131

Query: 84  ECGWAGRIFADGRLAFNEFSRTAKLFGGTVKKSLILEPLGDELITYFSKRMISQETLKRN 143
           ECGWAGRIFADGRLAFNEFSRTAKLFGGT KKSLILEPLGDELITYFSKRMISQETLKRN
Sbjct: 132 ECGWAGRIFADGRLAFNEFSRTAKLFGGTAKKSLILEPLGDELITYFSKRMISQETLKRN 191

Query: 144 VVMQTADRQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVE 203
           VVMQTADRQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVE
Sbjct: 192 VVMQTADRQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVE 251

Query: 204 GEMDKLSVEEAGFLNCISVPGGAPTKVSTNAVASIQKDTAYQYLWSCKDLLDKVPRIILA 263
           GEMDKLSVEEAGFLNCISVPGGAPTKVSTNAVASIQKDTAYQYLWSCKDLLDKVPRIILA
Sbjct: 252 GEMDKLSVEEAGFLNCISVPGGAPTKVSTNAVASIQKDTAYQYLWSCKDLLDKVPRIILA 311

Query: 264 TDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILMQLGADALKKAIEDAK 323
           TDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEIL+QLGADALKKAIEDAK
Sbjct: 312 TDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILVQLGADALKKAIEDAK 371

Query: 324 SYQLCDTHQIQVEEDLESFHEPS 346
           SYQLCDT +IQVEEDLESFHEPS
Sbjct: 372 SYQLCDTDEIQVEEDLESFHEPS 394

[Close]

BLAST of Cp4.1LG09g07090 vs. NCBI nr
Match: KAG6573428.1 (Primase-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 653 bits (1685), Expect = 4.58e-235
Identity = 317/323 (98.14%), Postives = 320/323 (99.07%), Query Frame = 0


Query: 24  VKVLMEKMDLIGIVCDEHCTPGKYYCLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQS 83
           VKVLMEKMDLIGIVCDE CTPGKYYCLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQS
Sbjct: 74  VKVLMEKMDLIGIVCDEQCTPGKYYCLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQS 133

Query: 84  ECGWAGRIFADGRLAFNEFSRTAKLFGGTVKKSLILEPLGDELITYFSKRMISQETLKRN 143
           ECGWAGRIFADGRLAFNEFSRTAKLFGGT KKSLILEPLGDELITYFSKRMISQETLKRN
Sbjct: 134 ECGWAGRIFADGRLAFNEFSRTAKLFGGTAKKSLILEPLGDELITYFSKRMISQETLKRN 193

Query: 144 VVMQTADRQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVE 203
           VVMQTADRQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVE
Sbjct: 194 VVMQTADRQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVE 253

Query: 204 GEMDKLSVEEAGFLNCISVPGGAPTKVSTNAVASIQKDTAYQYLWSCKDLLDKVPRIILA 263
           GEMDKLSVEEAGFLNCISVPGGAPTKVSTNAVASIQKDTAYQYLWSCKDLLDKVPRIILA
Sbjct: 254 GEMDKLSVEEAGFLNCISVPGGAPTKVSTNAVASIQKDTAYQYLWSCKDLLDKVPRIILA 313

Query: 264 TDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILMQLGADALKKAIEDAK 323
           TDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEIL+QLGADALKKAI+DAK
Sbjct: 314 TDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILVQLGADALKKAIQDAK 373

Query: 324 SYQLCDTHQIQVEEDLESFHEPS 346
           SYQLCDT +IQVEEDLESFHEPS
Sbjct: 374 SYQLCDTDEIQVEEDLESFHEPS 396

[Close]

BLAST of Cp4.1LG09g07090 vs. NCBI nr
Match: XP_022955060.1 (primase homolog protein-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 649 bits (1673), Expect = 1.75e-234
Identity = 314/319 (98.43%), Postives = 316/319 (99.06%), Query Frame = 0


Query: 28  MEKMDLIGIVCDEHCTPGKYYCLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQSECGW 87
           MEKMDLIGIVCDE CTPGKYYCLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQSECGW
Sbjct: 1   MEKMDLIGIVCDEQCTPGKYYCLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQSECGW 60

Query: 88  AGRIFADGRLAFNEFSRTAKLFGGTVKKSLILEPLGDELITYFSKRMISQETLKRNVVMQ 147
           AGRIFADGRLAFNEFSRTAKLFGGT KKSLILEPLGDELITYFSKRMISQETLKRNVVMQ
Sbjct: 61  AGRIFADGRLAFNEFSRTAKLFGGTAKKSLILEPLGDELITYFSKRMISQETLKRNVVMQ 120

Query: 148 TADRQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVEGEMD 207
           TADRQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVEGEMD
Sbjct: 121 TADRQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVEGEMD 180

Query: 208 KLSVEEAGFLNCISVPGGAPTKVSTNAVASIQKDTAYQYLWSCKDLLDKVPRIILATDSD 267
           KLSVEEAGFLNCISVPGGAPTKVSTNAVASIQKDTAYQYLWSCKDLLDKVPRIILATDSD
Sbjct: 181 KLSVEEAGFLNCISVPGGAPTKVSTNAVASIQKDTAYQYLWSCKDLLDKVPRIILATDSD 240

Query: 268 EPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILMQLGADALKKAIEDAKSYQL 327
           EPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEIL+QLGADALKKAIEDAKSYQL
Sbjct: 241 EPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILVQLGADALKKAIEDAKSYQL 300

Query: 328 CDTHQIQVEEDLESFHEPS 346
           CDT +IQVEEDLESFHEPS
Sbjct: 301 CDTDEIQVEEDLESFHEPS 319

[Close]

BLAST of Cp4.1LG09g07090 vs. NCBI nr
Match: XP_022994814.1 (primase homolog protein isoform X1 [Cucurbita maxima])

HSP 1 Score: 649 bits (1674), Expect = 3.64e-233
Identity = 316/323 (97.83%), Postives = 317/323 (98.14%), Query Frame = 0


Query: 24  VKVLMEKMDLIGIVCDEHCTPGKYYCLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQS 83
           VKVLMEKMDLIGIVCDE CTPGKYYCLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQS
Sbjct: 88  VKVLMEKMDLIGIVCDEQCTPGKYYCLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQS 147

Query: 84  ECGWAGRIFADGRLAFNEFSRTAKLFGGTVKKSLILEPLGDELITYFSKRMISQETLKRN 143
           ECGWAGRIFADGRLAFNEFSRTAKLFGGTVKKSLILEPLGDELITYFSKRMISQETLKRN
Sbjct: 148 ECGWAGRIFADGRLAFNEFSRTAKLFGGTVKKSLILEPLGDELITYFSKRMISQETLKRN 207

Query: 144 VVMQTADRQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVE 203
           VVMQTA RQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVE
Sbjct: 208 VVMQTAGRQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVE 267

Query: 204 GEMDKLSVEEAGFLNCISVPGGAPTKVSTNAVASIQKDTAYQYLWSCKDLLDKVPRIILA 263
           GEMDKLSVEEAGFLNCISVPGGAP KVSTNAVASIQKDTAYQYLWSCKDLLDKVPR+ILA
Sbjct: 268 GEMDKLSVEEAGFLNCISVPGGAPNKVSTNAVASIQKDTAYQYLWSCKDLLDKVPRVILA 327

Query: 264 TDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILMQLGADALKKAIEDAK 323
           TDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILMQLGADALKKAIEDAK
Sbjct: 328 TDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILMQLGADALKKAIEDAK 387

Query: 324 SYQLCDTHQIQVEEDLESFHEPS 346
           SYQLCDT  IQVE DLESFHEPS
Sbjct: 388 SYQLCDTDHIQVEGDLESFHEPS 410

[Close]

BLAST of Cp4.1LG09g07090 vs. ExPASy TrEMBL
Match: A0A6J1GUU9 (primase homolog protein-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111457136 PE=4 SV=1)

HSP 1 Score: 654 bits (1688), Expect = 7.18e-236
Identity = 318/323 (98.45%), Postives = 320/323 (99.07%), Query Frame = 0


Query: 24  VKVLMEKMDLIGIVCDEHCTPGKYYCLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQS 83
           VKVLMEKMDLIGIVCDE CTPGKYYCLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQS
Sbjct: 72  VKVLMEKMDLIGIVCDEQCTPGKYYCLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQS 131

Query: 84  ECGWAGRIFADGRLAFNEFSRTAKLFGGTVKKSLILEPLGDELITYFSKRMISQETLKRN 143
           ECGWAGRIFADGRLAFNEFSRTAKLFGGT KKSLILEPLGDELITYFSKRMISQETLKRN
Sbjct: 132 ECGWAGRIFADGRLAFNEFSRTAKLFGGTAKKSLILEPLGDELITYFSKRMISQETLKRN 191

Query: 144 VVMQTADRQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVE 203
           VVMQTADRQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVE
Sbjct: 192 VVMQTADRQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVE 251

Query: 204 GEMDKLSVEEAGFLNCISVPGGAPTKVSTNAVASIQKDTAYQYLWSCKDLLDKVPRIILA 263
           GEMDKLSVEEAGFLNCISVPGGAPTKVSTNAVASIQKDTAYQYLWSCKDLLDKVPRIILA
Sbjct: 252 GEMDKLSVEEAGFLNCISVPGGAPTKVSTNAVASIQKDTAYQYLWSCKDLLDKVPRIILA 311

Query: 264 TDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILMQLGADALKKAIEDAK 323
           TDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEIL+QLGADALKKAIEDAK
Sbjct: 312 TDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILVQLGADALKKAIEDAK 371

Query: 324 SYQLCDTHQIQVEEDLESFHEPS 346
           SYQLCDT +IQVEEDLESFHEPS
Sbjct: 372 SYQLCDTDEIQVEEDLESFHEPS 394

[Close]

BLAST of Cp4.1LG09g07090 vs. ExPASy TrEMBL
Match: A0A6J1GU46 (primase homolog protein-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457136 PE=4 SV=1)

HSP 1 Score: 649 bits (1673), Expect = 8.47e-235
Identity = 314/319 (98.43%), Postives = 316/319 (99.06%), Query Frame = 0


Query: 28  MEKMDLIGIVCDEHCTPGKYYCLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQSECGW 87
           MEKMDLIGIVCDE CTPGKYYCLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQSECGW
Sbjct: 1   MEKMDLIGIVCDEQCTPGKYYCLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQSECGW 60

Query: 88  AGRIFADGRLAFNEFSRTAKLFGGTVKKSLILEPLGDELITYFSKRMISQETLKRNVVMQ 147
           AGRIFADGRLAFNEFSRTAKLFGGT KKSLILEPLGDELITYFSKRMISQETLKRNVVMQ
Sbjct: 61  AGRIFADGRLAFNEFSRTAKLFGGTAKKSLILEPLGDELITYFSKRMISQETLKRNVVMQ 120

Query: 148 TADRQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVEGEMD 207
           TADRQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVEGEMD
Sbjct: 121 TADRQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVEGEMD 180

Query: 208 KLSVEEAGFLNCISVPGGAPTKVSTNAVASIQKDTAYQYLWSCKDLLDKVPRIILATDSD 267
           KLSVEEAGFLNCISVPGGAPTKVSTNAVASIQKDTAYQYLWSCKDLLDKVPRIILATDSD
Sbjct: 181 KLSVEEAGFLNCISVPGGAPTKVSTNAVASIQKDTAYQYLWSCKDLLDKVPRIILATDSD 240

Query: 268 EPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILMQLGADALKKAIEDAKSYQL 327
           EPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEIL+QLGADALKKAIEDAKSYQL
Sbjct: 241 EPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILVQLGADALKKAIEDAKSYQL 300

Query: 328 CDTHQIQVEEDLESFHEPS 346
           CDT +IQVEEDLESFHEPS
Sbjct: 301 CDTDEIQVEEDLESFHEPS 319

[Close]

BLAST of Cp4.1LG09g07090 vs. ExPASy TrEMBL
Match: A0A6J1K3X3 (primase homolog protein isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111490430 PE=4 SV=1)

HSP 1 Score: 649 bits (1674), Expect = 1.76e-233
Identity = 316/323 (97.83%), Postives = 317/323 (98.14%), Query Frame = 0


Query: 24  VKVLMEKMDLIGIVCDEHCTPGKYYCLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQS 83
           VKVLMEKMDLIGIVCDE CTPGKYYCLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQS
Sbjct: 88  VKVLMEKMDLIGIVCDEQCTPGKYYCLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQS 147

Query: 84  ECGWAGRIFADGRLAFNEFSRTAKLFGGTVKKSLILEPLGDELITYFSKRMISQETLKRN 143
           ECGWAGRIFADGRLAFNEFSRTAKLFGGTVKKSLILEPLGDELITYFSKRMISQETLKRN
Sbjct: 148 ECGWAGRIFADGRLAFNEFSRTAKLFGGTVKKSLILEPLGDELITYFSKRMISQETLKRN 207

Query: 144 VVMQTADRQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVE 203
           VVMQTA RQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVE
Sbjct: 208 VVMQTAGRQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVE 267

Query: 204 GEMDKLSVEEAGFLNCISVPGGAPTKVSTNAVASIQKDTAYQYLWSCKDLLDKVPRIILA 263
           GEMDKLSVEEAGFLNCISVPGGAP KVSTNAVASIQKDTAYQYLWSCKDLLDKVPR+ILA
Sbjct: 268 GEMDKLSVEEAGFLNCISVPGGAPNKVSTNAVASIQKDTAYQYLWSCKDLLDKVPRVILA 327

Query: 264 TDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILMQLGADALKKAIEDAK 323
           TDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILMQLGADALKKAIEDAK
Sbjct: 328 TDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILMQLGADALKKAIEDAK 387

Query: 324 SYQLCDTHQIQVEEDLESFHEPS 346
           SYQLCDT  IQVE DLESFHEPS
Sbjct: 388 SYQLCDTDHIQVEGDLESFHEPS 410

[Close]

BLAST of Cp4.1LG09g07090 vs. ExPASy TrEMBL
Match: A0A6J1K2E1 (primase homolog protein isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111490430 PE=4 SV=1)

HSP 1 Score: 643 bits (1659), Expect = 1.15e-232
Identity = 312/319 (97.81%), Postives = 313/319 (98.12%), Query Frame = 0


Query: 28  MEKMDLIGIVCDEHCTPGKYYCLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQSECGW 87
           MEKMDLIGIVCDE CTPGKYYCLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQSECGW
Sbjct: 1   MEKMDLIGIVCDEQCTPGKYYCLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQSECGW 60

Query: 88  AGRIFADGRLAFNEFSRTAKLFGGTVKKSLILEPLGDELITYFSKRMISQETLKRNVVMQ 147
           AGRIFADGRLAFNEFSRTAKLFGGTVKKSLILEPLGDELITYFSKRMISQETLKRNVVMQ
Sbjct: 61  AGRIFADGRLAFNEFSRTAKLFGGTVKKSLILEPLGDELITYFSKRMISQETLKRNVVMQ 120

Query: 148 TADRQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVEGEMD 207
           TA RQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVEGEMD
Sbjct: 121 TAGRQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVEGEMD 180

Query: 208 KLSVEEAGFLNCISVPGGAPTKVSTNAVASIQKDTAYQYLWSCKDLLDKVPRIILATDSD 267
           KLSVEEAGFLNCISVPGGAP KVSTNAVASIQKDTAYQYLWSCKDLLDKVPR+ILATDSD
Sbjct: 181 KLSVEEAGFLNCISVPGGAPNKVSTNAVASIQKDTAYQYLWSCKDLLDKVPRVILATDSD 240

Query: 268 EPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILMQLGADALKKAIEDAKSYQL 327
           EPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILMQLGADALKKAIEDAKSYQL
Sbjct: 241 EPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILMQLGADALKKAIEDAKSYQL 300

Query: 328 CDTHQIQVEEDLESFHEPS 346
           CDT  IQVE DLESFHEPS
Sbjct: 301 CDTDHIQVEGDLESFHEPS 319

[Close]

BLAST of Cp4.1LG09g07090 vs. ExPASy TrEMBL
Match: A0A6J1K0C5 (primase homolog protein isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111490430 PE=4 SV=1)

HSP 1 Score: 570 bits (1470), Expect = 2.15e-204
Identity = 280/286 (97.90%), Postives = 281/286 (98.25%), Query Frame = 0


Query: 61  MERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNEFSRTAKLFGGTVKKSLILE 120
           MERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNEFSRTAKLFGGTVKKSLILE
Sbjct: 1   MERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNEFSRTAKLFGGTVKKSLILE 60

Query: 121 PLGDELITYFSKRMISQETLKRNVVMQTADRQAAIAFTYRQNGQLVGCKYRTINKKFWQA 180
           PLGDELITYFSKRMISQETLKRNVVMQTA RQAAIAFTYRQNGQLVGCKYRTINKKFWQA
Sbjct: 61  PLGDELITYFSKRMISQETLKRNVVMQTAGRQAAIAFTYRQNGQLVGCKYRTINKKFWQA 120

Query: 181 KGTEKLFYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPTKVSTNAVASIQK 240
           KGTEKLFYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAP KVSTNAVASIQK
Sbjct: 121 KGTEKLFYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTNAVASIQK 180

Query: 241 DTAYQYLWSCKDLLDKVPRIILATDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRF 300
           DTAYQYLWSCKDLLDKVPR+ILATDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRF
Sbjct: 181 DTAYQYLWSCKDLLDKVPRVILATDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRF 240

Query: 301 KDANEILMQLGADALKKAIEDAKSYQLCDTHQIQVEEDLESFHEPS 346
           KDANEILMQLGADALKKAIEDAKSYQLCDT  IQVE DLESFHEPS
Sbjct: 241 KDANEILMQLGADALKKAIEDAKSYQLCDTDHIQVEGDLESFHEPS 286

[Close]

BLAST of Cp4.1LG09g07090 vs. TAIR 10
Match: AT1G30680.1 (toprim domain-containing protein )

HSP 1 Score: 310.1 bits (793), Expect = 2.3e-84
Identity = 157/330 (47.58%), Postives = 214/330 (64.85%), Query Frame = 0


Query: 5   SYSAVAIATTRVNVMGESKVKVLMEKMDLIGI------VCDEHCTPGKYYCLLCPKCKGG 64
           SY+++    T V+   E+  +V++ ++  +        V  E+C PG++  L+CP C+GG
Sbjct: 83  SYNSIPRVPTPVDTEVEADKRVVLSRLVTLRRKLAEQGVDAENCPPGQHSGLICPTCEGG 142

Query: 65  RLMERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNEFSRTAKLFGGTVKKSLI 124
              E+SLSL + P G  A W CF+ +CG  G + ADG LA        K+      + + 
Sbjct: 143 NSGEKSLSLFIAPDGSSATWNCFRGKCGLKGGVRADGGLA--SADPIEKVERKITVEGIE 202

Query: 125 LEPLGDELITYFSKRMISQETLKRNVVMQ-TADRQAAIAFTYRQNGQLVGCKYRTINKKF 184
           LEPL DE+  YF+ R IS++TL+RN VMQ     +  IAFTY Q G+LV CKYR++ K F
Sbjct: 203 LEPLCDEIQDYFAARAISRKTLERNRVMQKRIGDEIVIAFTYWQRGELVSCKYRSLTKMF 262

Query: 185 WQAKGTEKLFYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPTKVSTNAVAS 244
           +Q + T ++ YG+DDI    E+IIVEGE+DKL++EEAGFLNC+SVP GAP KVS+  + S
Sbjct: 263 FQERKTRRILYGLDDIEKTSEVIIVEGEIDKLAMEEAGFLNCVSVPDGAPAKVSSKEIPS 322

Query: 245 IQKDTAYQYLWSCKDLLDKVPRIILATDSDEPGQALAEELALRLGKHRCWRVDWPYKDDF 304
             KDT Y++LW+C D L K  RI++ATD D PGQA+AEE+A RLGK RCWRV WP K + 
Sbjct: 323 EDKDTKYKFLWNCNDYLKKASRIVIATDGDGPGQAMAEEIARRLGKERCWRVKWPKKSED 382

Query: 305 NRFKDANEILMQLGADALKKAIEDAKSYQL 328
             FKDANE+LM  G   LK+AI DA+ Y +
Sbjct: 383 EHFKDANEVLMSKGPHLLKEAILDAEPYPI 410

[Close]

BLAST of Cp4.1LG09g07090 vs. TAIR 10
Match: AT1G30660.1 (nucleic acid binding;nucleic acid binding )

HSP 1 Score: 303.5 bits (776), Expect = 2.1e-82
Identity = 155/307 (50.49%), Postives = 203/307 (66.12%), Query Frame = 0


Query: 22  SKVKVLMEKMDLIGIVCDEHCTPGKYYCLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCF 81
           SK+  LM K+   GI   ++C PG   CL+CPKC+ G   E+SL+L++ P G  A W C 
Sbjct: 33  SKLVTLMRKLSEQGIDA-QNCPPGVRSCLICPKCEVGDSGEKSLTLYIYPDGSSAKWTC- 92

Query: 82  QSECGWAGRIFADGRLAFNEFSRTAKLFGGTVKKSLILEPLGDELITYFSKRMISQETLK 141
           + +CG  G +  DG+L   +     K+      +S+ LEPL DE+  +F+ R IS +TL+
Sbjct: 93  RRKCGLKGVLQVDGKLVSKD--PIGKVERKITVESIKLEPLCDEIQDFFAARAISGKTLE 152

Query: 142 RNVVMQ-TADRQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELI 201
           RN VMQ   D +  IAFTY Q G+LV CKYR++ KKF Q + T K+ YG+DDI +  E+I
Sbjct: 153 RNRVMQKRIDDEIVIAFTYWQRGELVSCKYRSLTKKFVQERNTRKILYGLDDIEETSEII 212

Query: 202 IVEGEMDKLSVEEAGFLNCISVPGGAPTKVSTNAVASIQKDTAYQYLWSCKDLLDKVPRI 261
           IVEGE DKL++EEAGF NC+SVP GAP  VS+  + S  KDTA++Y+W+C D L K  RI
Sbjct: 213 IVEGEPDKLAMEEAGFFNCVSVPDGAPETVSSKEIPSESKDTAFKYIWNCNDYLKKASRI 272

Query: 262 ILATDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILMQLGADALKKAIE 321
           ++ATD D PGQALAEELA RLGK RCW V WP K +   FKDANE+LM  G   LK+AI 
Sbjct: 273 VIATDGDGPGQALAEELARRLGKERCWLVKWPKKSEDEHFKDANEVLMSKGPHLLKEAIL 332

Query: 322 DAKSYQL 328
           +A+ Y L
Sbjct: 333 NAEPYPL 335

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g07090 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B5X582	3.2e-83	47.58	Twinkle homolog protein, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=...	[more]
F4I6E6	3.0e-81	50.49	Primase homolog protein OS=Arabidopsis thaliana OX=3702 GN=At1g30660 PE=3 SV=1	[more]

BLAST of Cp4.1LG09g07090 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023541322.1	9.33e-240	100.00	primase homolog protein-like [Cucurbita pepo subsp. pepo]	[more]
XP_022955059.1	1.48e-235	98.45	primase homolog protein-like isoform X1 [Cucurbita moschata]	[more]
KAG6573428.1	4.58e-235	98.14	Primase-like protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022955060.1	1.75e-234	98.43	primase homolog protein-like isoform X2 [Cucurbita moschata]	[more]
XP_022994814.1	3.64e-233	97.83	primase homolog protein isoform X1 [Cucurbita maxima]	[more]

BLAST of Cp4.1LG09g07090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GUU9	7.18e-236	98.45	primase homolog protein-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1GU46	8.47e-235	98.43	primase homolog protein-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1K3X3	1.76e-233	97.83	primase homolog protein isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111490430 P...	[more]
A0A6J1K2E1	1.15e-232	97.81	primase homolog protein isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111490430 P...	[more]
A0A6J1K0C5	2.15e-204	97.90	primase homolog protein isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111490430 P...	[more]

BLAST of Cp4.1LG09g07090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G30680.1	2.3e-84	47.58	toprim domain-containing protein	[more]
AT1G30660.1	2.1e-82	50.49	nucleic acid binding;nucleic acid binding	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006171	TOPRIM domain	SMART	SM00493	toprim5	coord: 197..286 e-value: 2.1E-6 score: 37.3
IPR006171	TOPRIM domain	PFAM	PF13662	Toprim_4	coord: 197..289 e-value: 5.1E-18 score: 65.3
IPR006171	TOPRIM domain	PROSITE	PS50880	TOPRIM	coord: 197..315 score: 9.651064
None	No IPR available	GENE3D	3.40.1360.10		coord: 184..326 e-value: 2.9E-32 score: 113.3
None	No IPR available	PANTHER	PTHR12873:SF1	ACID-BINDING PROTEIN, PUTATIVE-RELATED	coord: 10..326
None	No IPR available	SUPERFAMILY	56731	DNA primase core	coord: 129..309
IPR027032	Twinkle-like protein	PANTHER	PTHR12873	T7-LIKE MITOCHONDRIAL DNA HELICASE	coord: 10..326
IPR034154	Archaeal primase DnaG/twinkle, TOPRIM domain	CDD	cd01029	TOPRIM_primases	coord: 197..289 e-value: 2.29872E-11 score: 57.2802

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG09g07090.1	Cp4.1LG09g07090.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032508	DNA duplex unwinding
molecular_function	GO:0043139	5'-3' DNA helicase activity
molecular_function	GO:0003697	single-stranded DNA binding