Cp4.1LG09g07060 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG09g07060
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	photosystem I subunit F
Location	Cp4.1LG09: 6215568 .. 6216251 (-)
RNA-Seq Expression	Cp4.1LG09g07060
Synteny	Cp4.1LG09g07060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCTAACAATCCCCACAAACCTCTCAAAACCCCTTTTGAAGCCCAAATTCAGCTCCTCATTGGCCTCAAAATCAAGACCCTCTTCCTCAATCCTCTGTTCCGCCACCCAAAATCAAAATGGAAGTCCTGAAAATGCTTCCTCCTCTCTGCAGGCTTTCTCCGCCGCCTTAGCCCTCTCCTCCATCCTCCTCTCTGCCCCTCTCCCCGCTGTCGCCGACATCGCTGGTCTCACCCCCTGCAAGGATTCCAAACAATTTGCCAAGCGGGAGAAGCAGCAAATCAAGAAATTGGAATCCTCTTTGAAGAATTACGCTCCCGACAGTGCCCCGGCGCTGGCGATCCAAGCTTCGGTCGAGAAGACAAAGAGACGATTCGCTTTCTATGGAAAACAGGGGCTTCTTTGTGGGGCTGATGGGTTGCCTCATTTGATTGTGAGTGGCGACCAGAGGCATTGGGGTGAGTTTATAACTCCTGGGTTCTTGTTCCTTTACATTGCTGGGTGGATTGGATGGGTTGGAAGAAGCTATTTGATTGCTATTAGAGATGATAAGAAGCCTACCCAGAAGGAGATTATCATTGATGTTCCTTTGGCTACTAGCTTGGTGTTCAGAGGCTTTAGCTGGCCTATTGCTGCTTACAGAGAGCTTGTCAATGGCGAACTCATTGCCAAGGATGTCTAA

mRNA sequence

ATGTCTCTAACAATCCCCACAAACCTCTCAAAACCCCTTTTGAAGCCCAAATTCAGCTCCTCATTGGCCTCAAAATCAAGACCCTCTTCCTCAATCCTCTGTTCCGCCACCCAAAATCAAAATGGAAGTCCTGAAAATGCTTCCTCCTCTCTGCAGGCTTTCTCCGCCGCCTTAGCCCTCTCCTCCATCCTCCTCTCTGCCCCTCTCCCCGCTGTCGCCGACATCGCTGGTCTCACCCCCTGCAAGGATTCCAAACAATTTGCCAAGCGGGAGAAGCAGCAAATCAAGAAATTGGAATCCTCTTTGAAGAATTACGCTCCCGACAGTGCCCCGGCGCTGGCGATCCAAGCTTCGGTCGAGAAGACAAAGAGACGATTCGCTTTCTATGGAAAACAGGGGCTTCTTTGTGGGGCTGATGGGTTGCCTCATTTGATTGTGAGTGGCGACCAGAGGCATTGGGGTGAGTTTATAACTCCTGGGTTCTTGTTCCTTTACATTGCTGGGTGGATTGGATGGGTTGGAAGAAGCTATTTGATTGCTATTAGAGATGATAAGAAGCCTACCCAGAAGGAGATTATCATTGATGTTCCTTTGGCTACTAGCTTGGTGTTCAGAGGCTTTAGCTGGCCTATTGCTGCTTACAGAGAGCTTGTCAATGGCGAACTCATTGCCAAGGATGTCTAA

Coding sequence (CDS)

ATGTCTCTAACAATCCCCACAAACCTCTCAAAACCCCTTTTGAAGCCCAAATTCAGCTCCTCATTGGCCTCAAAATCAAGACCCTCTTCCTCAATCCTCTGTTCCGCCACCCAAAATCAAAATGGAAGTCCTGAAAATGCTTCCTCCTCTCTGCAGGCTTTCTCCGCCGCCTTAGCCCTCTCCTCCATCCTCCTCTCTGCCCCTCTCCCCGCTGTCGCCGACATCGCTGGTCTCACCCCCTGCAAGGATTCCAAACAATTTGCCAAGCGGGAGAAGCAGCAAATCAAGAAATTGGAATCCTCTTTGAAGAATTACGCTCCCGACAGTGCCCCGGCGCTGGCGATCCAAGCTTCGGTCGAGAAGACAAAGAGACGATTCGCTTTCTATGGAAAACAGGGGCTTCTTTGTGGGGCTGATGGGTTGCCTCATTTGATTGTGAGTGGCGACCAGAGGCATTGGGGTGAGTTTATAACTCCTGGGTTCTTGTTCCTTTACATTGCTGGGTGGATTGGATGGGTTGGAAGAAGCTATTTGATTGCTATTAGAGATGATAAGAAGCCTACCCAGAAGGAGATTATCATTGATGTTCCTTTGGCTACTAGCTTGGTGTTCAGAGGCTTTAGCTGGCCTATTGCTGCTTACAGAGAGCTTGTCAATGGCGAACTCATTGCCAAGGATGTCTAA

Protein sequence

MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALALSSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIRDDKKPTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNGELIAKDV

Homology

[Close]

BLAST of Cp4.1LG09g07060 vs. ExPASy Swiss-Prot
Match: Q9SHE8 (Photosystem I reaction center subunit III, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAF PE=1 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 7.8e-86
Identity = 164/228 (71.93%), Postives = 192/228 (84.21%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKFSSSLA-SKSRPSSSILCSATQNQNGSPENASSSLQAFSAALA 60
           MSLTIP NL   +L P+ + SL  S  + S+  +CS  ++ + +P+    S++AFSAA+A
Sbjct: 1   MSLTIPANL---VLNPRSNKSLTQSVPKSSARFVCSDDKSSSSTPQ----SMKAFSAAVA 60

Query: 61  LSSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASV 120
           LSSILLSAP+PAVADI+GLTPCKDSKQFAKREKQQIKKLESSLK YAP+SAPALA+ A +
Sbjct: 61  LSSILLSAPMPAVADISGLTPCKDSKQFAKREKQQIKKLESSLKLYAPESAPALALNAQI 120

Query: 121 EKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLI 180
           EKTKRRF  YGK GLLCG+DGLPHLIV+GDQRHWGEFITPG LFLYIAGWIGWVGRSYLI
Sbjct: 121 EKTKRRFDNYGKYGLLCGSDGLPHLIVNGDQRHWGEFITPGILFLYIAGWIGWVGRSYLI 180

Query: 181 AIRDDKKPTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNGELIAKDV 228
           AI  +KKP  KEIIIDVPLA+ ++FRGF WP+AAYRE +NG+LIAKDV
Sbjct: 181 AISGEKKPAMKEIIIDVPLASRIIFRGFIWPVAAYREFLNGDLIAKDV 221

[Close]

BLAST of Cp4.1LG09g07060 vs. ExPASy Swiss-Prot
Match: P46486 (Photosystem I reaction center subunit III, chloroplastic OS=Flaveria trinervia OX=4227 GN=PSAF PE=2 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 1.5e-84
Identity = 168/228 (73.68%), Postives = 194/228 (85.09%), Query Frame = 0


Query: 1   MSLTIPTNLSKPL-LKPKFSSSLASKSR-PSSSILCSATQNQNGSPENASSSLQAFSAAL 60
           MS TI T+  +PL +    SS + SKS+  S+SI+CS + ++  +  +  SSL+A SAAL
Sbjct: 1   MSFTISTSFLQPLEISNLKSSPITSKSKVTSTSIVCSGSTDEKINNADGKSSLKALSAAL 60

Query: 61  ALSSILLSA---PLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAI 120
           ALSSIL+S+    LPA ADI+GLTPCK+SKQFAKREKQ +KKLESSLK YAPDSAPALAI
Sbjct: 61  ALSSILVSSTVPALPASADISGLTPCKESKQFAKREKQSLKKLESSLKLYAPDSAPALAI 120

Query: 121 QASVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGR 180
           +A++EKTKRRF  YGKQGLLCG+DGLPHLIVSGDQRHWGEFITPG LFLYIAGWIGWVGR
Sbjct: 121 KATMEKTKRRFDNYGKQGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGR 180

Query: 181 SYLIAIRDDKKPTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNGELI 224
           SYLIAIRD+KKPTQKEIIIDVPLAT L+FRGFSWP+AAYRE +NGELI
Sbjct: 181 SYLIAIRDEKKPTQKEIIIDVPLATKLLFRGFSWPVAAYREYLNGELI 228

[Close]

BLAST of Cp4.1LG09g07060 vs. ExPASy Swiss-Prot
Match: P12355 (Photosystem I reaction center subunit III, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSAF PE=1 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 4.4e-81
Identity = 165/229 (72.05%), Postives = 188/229 (82.10%), Query Frame = 0


Query: 1   MSLTIPTNLSKPL-LKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQA-FSAAL 60
           MS TIPTNL KPL  KPK  SS  S   P S I+C    +Q    +   + + A  +AAL
Sbjct: 1   MSFTIPTNLYKPLATKPKHLSS--SSFAPRSKIVCQQENDQQQPKKLELAKVGANAAAAL 60

Query: 61  ALSSILLS----APLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALA 120
           ALSS+LLS    AP  A+ADIAGLTPCK+SKQFAKREKQ +KKL++SLK YA DSAPALA
Sbjct: 61  ALSSVLLSSWSVAPDAAMADIAGLTPCKESKQFAKREKQALKKLQASLKLYADDSAPALA 120

Query: 121 IQASVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVG 180
           I+A++EKTK+RF  YGK GLLCG+DGLPHLIVSGDQRHWGEFITPG LFLYIAGWIGWVG
Sbjct: 121 IKATMEKTKKRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVG 180

Query: 181 RSYLIAIRDDKKPTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNGELI 224
           RSYLIAIRD+KKPTQKEIIIDVPLA+SL+FRGFSWP+AAYREL+NGEL+
Sbjct: 181 RSYLIAIRDEKKPTQKEIIIDVPLASSLLFRGFSWPVAAYRELLNGELV 227

[Close]

BLAST of Cp4.1LG09g07060 vs. ExPASy Swiss-Prot
Match: P13192 (Photosystem I reaction center subunit III, chloroplastic OS=Hordeum vulgare OX=4513 GN=PSAF PE=1 SV=2)

HSP 1 Score: 283.5 bits (724), Expect = 2.1e-75
Identity = 148/220 (67.27%), Postives = 176/220 (80.00%), Query Frame = 0


Query: 19  SSSLASK---SRPSS--SILCSATQNQNG---SPENASSSLQAFSAALALSSILLS---- 78
           S++ A+K   SRP +  S+ CSA+   N    +  + S+S++ FSAALALSS+LLS    
Sbjct: 11  STAFAAKPRLSRPPARLSVSCSASSGDNNNSTATPSLSASIKTFSAALALSSVLLSSAAT 70

Query: 79  APLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVEKTKRRF 138
           +P PA ADIAGLTPCK+SK FAKREKQ +KKL SSLK YAPDSAPALAIQA+++KTKRRF
Sbjct: 71  SPPPAAADIAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRF 130

Query: 139 AFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIRDDKK 198
             YGK GLLCG+DGLPHLIVSGDQRHWGEFITPG LFLYIAGWIGWVGRSYLIA+  +KK
Sbjct: 131 ENYGKFGLLCGSDGLPHLIVSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKK 190

Query: 199 PTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNGELIAKD 227
           P  +EIIIDV LA  ++ RGF WP+AAYREL+NG+L+  D
Sbjct: 191 PAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDD 230

[Close]

BLAST of Cp4.1LG09g07060 vs. ExPASy Swiss-Prot
Match: P12356 (Photosystem I reaction center subunit III, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=PSAF PE=1 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 3.6e-51
Identity = 110/214 (51.40%), Postives = 146/214 (68.22%), Query Frame = 0


Query: 17  KFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALALSSILLSAPLPAVADIA 76
           K SS +A  SR +  + C A +N+  S    + +  A +AA++     LSAP  A+ADIA
Sbjct: 11  KASSRVAPSSRRALRVACQAQKNETASKVGTALAASALAAAVS-----LSAPSAAMADIA 70

Query: 77  GLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVEKTKRRFAFYGKQGLLC 136
           GLTPC +SK +AK EK+++K LE  LK Y  DSAPA+A++A++E+TK RFA Y K GLLC
Sbjct: 71  GLTPCSESKAYAKLEKKELKTLEKRLKQYEADSAPAVALKATMERTKARFANYAKAGLLC 130

Query: 137 GADGLPHLI----VSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIRDDKKPTQKEI 196
           G DGLPHLI    ++    H GE   P F FLY+AG+IG+VGR YLIA++ + KPT KEI
Sbjct: 131 GNDGLPHLIADPGLALKYGHAGEVFIPTFGFLYVAGYIGYVGRQYLIAVKGEAKPTDKEI 190

Query: 197 IIDVPLATSLVFRGFSWPIAAYRELVNGELIAKD 227
           IIDVPLAT L ++G  WP+AA +EL  G L+ K+
Sbjct: 191 IIDVPLATKLAWQGAGWPLAAVQELQRGTLLEKE 219

[Close]

BLAST of Cp4.1LG09g07060 vs. NCBI nr
Match: XP_023542340.1 (photosystem I reaction center subunit III, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 441 bits (1133), Expect = 1.00e-155
Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALAL 60
           MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALAL
Sbjct: 1   MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALAL 60

Query: 61  SSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVE 120
           SSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVE
Sbjct: 61  SSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVE 120

Query: 121 KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIA 180
           KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIA
Sbjct: 121 KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIA 180

Query: 181 IRDDKKPTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNGELIAKDV 227
           IRDDKKPTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNGELIAKDV
Sbjct: 181 IRDDKKPTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNGELIAKDV 227

[Close]

BLAST of Cp4.1LG09g07060 vs. NCBI nr
Match: XP_022955103.1 (photosystem I reaction center subunit III, chloroplastic [Cucurbita moschata])

HSP 1 Score: 439 bits (1130), Expect = 2.87e-155
Identity = 226/227 (99.56%), Postives = 227/227 (100.00%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALAL 60
           MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALAL
Sbjct: 1   MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALAL 60

Query: 61  SSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVE 120
           SSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVE
Sbjct: 61  SSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVE 120

Query: 121 KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIA 180
           KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIA
Sbjct: 121 KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIA 180

Query: 181 IRDDKKPTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNGELIAKDV 227
           IRDDKKPTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNG+LIAKDV
Sbjct: 181 IRDDKKPTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNGDLIAKDV 227

[Close]

BLAST of Cp4.1LG09g07060 vs. NCBI nr
Match: XP_022994929.1 (photosystem I reaction center subunit III, chloroplastic [Cucurbita maxima])

HSP 1 Score: 427 bits (1097), Expect = 2.77e-150
Identity = 223/227 (98.24%), Postives = 223/227 (98.24%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALAL 60
           MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQN   E ASSSLQAFSAALAL
Sbjct: 1   MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQN---ETASSSLQAFSAALAL 60

Query: 61  SSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVE 120
           SSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVE
Sbjct: 61  SSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVE 120

Query: 121 KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIA 180
           KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIA
Sbjct: 121 KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIA 180

Query: 181 IRDDKKPTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNGELIAKDV 227
           IRDDKKPTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNGELIAKDV
Sbjct: 181 IRDDKKPTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNGELIAKDV 224

[Close]

BLAST of Cp4.1LG09g07060 vs. NCBI nr
Match: XP_004150631.1 (photosystem I reaction center subunit III, chloroplastic [Cucumis sativus] >KGN66911.1 hypothetical protein Csa_006875 [Cucumis sativus])

HSP 1 Score: 410 bits (1053), Expect = 1.41e-143
Identity = 210/227 (92.51%), Postives = 220/227 (96.92%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALAL 60
           MSLTIPTNLSKPLLKPKFSS LA K +PSSSILCSA+QNQN   +N SSSLQAFSAALAL
Sbjct: 1   MSLTIPTNLSKPLLKPKFSSPLALKPKPSSSILCSASQNQN---QNTSSSLQAFSAALAL 60

Query: 61  SSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVE 120
           SSILLSAPLPAVADI+GLTPCK+SKQFAKREKQQIKKLESSLKNYAPDSAPALAI+A++E
Sbjct: 61  SSILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLESSLKNYAPDSAPALAIKATIE 120

Query: 121 KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIA 180
           KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIA
Sbjct: 121 KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIA 180

Query: 181 IRDDKKPTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNGELIAKDV 227
           IRD+KKPTQKEIIIDVPLATSLVFRGFSWP+AAYRELVNGELIAKDV
Sbjct: 181 IRDEKKPTQKEIIIDVPLATSLVFRGFSWPVAAYRELVNGELIAKDV 224

[Close]

BLAST of Cp4.1LG09g07060 vs. NCBI nr
Match: XP_038895167.1 (photosystem I reaction center subunit III, chloroplastic [Benincasa hispida])

HSP 1 Score: 405 bits (1041), Expect = 9.52e-142
Identity = 208/227 (91.63%), Postives = 217/227 (95.59%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALAL 60
           MSLTIPTNLSKPLLKPK SS L SK +PSSSILCSATQNQN   +N SSSLQAFSAALAL
Sbjct: 1   MSLTIPTNLSKPLLKPKLSSPLPSKPKPSSSILCSATQNQN---QNPSSSLQAFSAALAL 60

Query: 61  SSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVE 120
           SSILLSAPLPAVADI+GLTPCK+SKQFAKREKQQIKKLESSLKNYAPDSAPALA++A++E
Sbjct: 61  SSILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLESSLKNYAPDSAPALALKATIE 120

Query: 121 KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIA 180
           KTKRRFAFYG QGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIA
Sbjct: 121 KTKRRFAFYGNQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIA 180

Query: 181 IRDDKKPTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNGELIAKDV 227
           IR DKKPTQKEIIIDVPLATSLVFRGFSWP+AAYRELVNGELIAKDV
Sbjct: 181 IRGDKKPTQKEIIIDVPLATSLVFRGFSWPVAAYRELVNGELIAKDV 224

[Close]

BLAST of Cp4.1LG09g07060 vs. ExPASy TrEMBL
Match: A0A6J1GT12 (PSI-F OS=Cucurbita moschata OX=3662 GN=LOC111457171 PE=3 SV=1)

HSP 1 Score: 439 bits (1130), Expect = 1.39e-155
Identity = 226/227 (99.56%), Postives = 227/227 (100.00%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALAL 60
           MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALAL
Sbjct: 1   MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALAL 60

Query: 61  SSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVE 120
           SSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVE
Sbjct: 61  SSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVE 120

Query: 121 KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIA 180
           KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIA
Sbjct: 121 KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIA 180

Query: 181 IRDDKKPTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNGELIAKDV 227
           IRDDKKPTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNG+LIAKDV
Sbjct: 181 IRDDKKPTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNGDLIAKDV 227

[Close]

BLAST of Cp4.1LG09g07060 vs. ExPASy TrEMBL
Match: A0A6J1K487 (PSI-F OS=Cucurbita maxima OX=3661 GN=LOC111490506 PE=3 SV=1)

HSP 1 Score: 427 bits (1097), Expect = 1.34e-150
Identity = 223/227 (98.24%), Postives = 223/227 (98.24%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALAL 60
           MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQN   E ASSSLQAFSAALAL
Sbjct: 1   MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQN---ETASSSLQAFSAALAL 60

Query: 61  SSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVE 120
           SSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVE
Sbjct: 61  SSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVE 120

Query: 121 KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIA 180
           KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIA
Sbjct: 121 KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIA 180

Query: 181 IRDDKKPTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNGELIAKDV 227
           IRDDKKPTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNGELIAKDV
Sbjct: 181 IRDDKKPTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNGELIAKDV 224

[Close]

BLAST of Cp4.1LG09g07060 vs. ExPASy TrEMBL
Match: A0A0A0M3X2 (PSI-F OS=Cucumis sativus OX=3659 GN=Csa_1G714680 PE=3 SV=1)

HSP 1 Score: 410 bits (1053), Expect = 6.83e-144
Identity = 210/227 (92.51%), Postives = 220/227 (96.92%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALAL 60
           MSLTIPTNLSKPLLKPKFSS LA K +PSSSILCSA+QNQN   +N SSSLQAFSAALAL
Sbjct: 1   MSLTIPTNLSKPLLKPKFSSPLALKPKPSSSILCSASQNQN---QNTSSSLQAFSAALAL 60

Query: 61  SSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVE 120
           SSILLSAPLPAVADI+GLTPCK+SKQFAKREKQQIKKLESSLKNYAPDSAPALAI+A++E
Sbjct: 61  SSILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLESSLKNYAPDSAPALAIKATIE 120

Query: 121 KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIA 180
           KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIA
Sbjct: 121 KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIA 180

Query: 181 IRDDKKPTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNGELIAKDV 227
           IRD+KKPTQKEIIIDVPLATSLVFRGFSWP+AAYRELVNGELIAKDV
Sbjct: 181 IRDEKKPTQKEIIIDVPLATSLVFRGFSWPVAAYRELVNGELIAKDV 224

[Close]

BLAST of Cp4.1LG09g07060 vs. ExPASy TrEMBL
Match: A0A5D3E1S6 (PSI-F OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold129G00570 PE=3 SV=1)

HSP 1 Score: 402 bits (1032), Expect = 1.17e-140
Identity = 207/227 (91.19%), Postives = 218/227 (96.04%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALAL 60
           MSLTIPTNLSKPLLKPK SS LA K +PSSSILCSA  NQN S +N SSSLQAFSAALAL
Sbjct: 1   MSLTIPTNLSKPLLKPKLSSPLALKPKPSSSILCSAFPNQNQS-QNPSSSLQAFSAALAL 60

Query: 61  SSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVE 120
           SSILLSAPLPAVADI+GLTPCK+SKQFAKREKQQIKKLES+LKNYAPDSAPALAI+A++E
Sbjct: 61  SSILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLESALKNYAPDSAPALAIKATIE 120

Query: 121 KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIA 180
           KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIA
Sbjct: 121 KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIA 180

Query: 181 IRDDKKPTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNGELIAKDV 227
           IR++KKPTQKEIIIDVPLATSLVFRGFSWP+AAYRELVNGELIAKDV
Sbjct: 181 IRNEKKPTQKEIIIDVPLATSLVFRGFSWPVAAYRELVNGELIAKDV 226

[Close]

BLAST of Cp4.1LG09g07060 vs. ExPASy TrEMBL
Match: A0A1S3C8V6 (PSI-F OS=Cucumis melo OX=3656 GN=LOC103498296 PE=3 SV=1)

HSP 1 Score: 402 bits (1032), Expect = 1.17e-140
Identity = 207/227 (91.19%), Postives = 218/227 (96.04%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALAL 60
           MSLTIPTNLSKPLLKPK SS LA K +PSSSILCSA  NQN S +N SSSLQAFSAALAL
Sbjct: 1   MSLTIPTNLSKPLLKPKLSSPLALKPKPSSSILCSAFPNQNQS-QNPSSSLQAFSAALAL 60

Query: 61  SSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVE 120
           SSILLSAPLPAVADI+GLTPCK+SKQFAKREKQQIKKLES+LKNYAPDSAPALAI+A++E
Sbjct: 61  SSILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLESALKNYAPDSAPALAIKATIE 120

Query: 121 KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIA 180
           KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIA
Sbjct: 121 KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIA 180

Query: 181 IRDDKKPTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNGELIAKDV 227
           IR++KKPTQKEIIIDVPLATSLVFRGFSWP+AAYRELVNGELIAKDV
Sbjct: 181 IRNEKKPTQKEIIIDVPLATSLVFRGFSWPVAAYRELVNGELIAKDV 226

[Close]

BLAST of Cp4.1LG09g07060 vs. TAIR 10
Match: AT1G31330.1 (photosystem I subunit F )

HSP 1 Score: 318.2 bits (814), Expect = 5.5e-87
Identity = 164/228 (71.93%), Postives = 192/228 (84.21%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKFSSSLA-SKSRPSSSILCSATQNQNGSPENASSSLQAFSAALA 60
           MSLTIP NL   +L P+ + SL  S  + S+  +CS  ++ + +P+    S++AFSAA+A
Sbjct: 1   MSLTIPANL---VLNPRSNKSLTQSVPKSSARFVCSDDKSSSSTPQ----SMKAFSAAVA 60

Query: 61  LSSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASV 120
           LSSILLSAP+PAVADI+GLTPCKDSKQFAKREKQQIKKLESSLK YAP+SAPALA+ A +
Sbjct: 61  LSSILLSAPMPAVADISGLTPCKDSKQFAKREKQQIKKLESSLKLYAPESAPALALNAQI 120

Query: 121 EKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLI 180
           EKTKRRF  YGK GLLCG+DGLPHLIV+GDQRHWGEFITPG LFLYIAGWIGWVGRSYLI
Sbjct: 121 EKTKRRFDNYGKYGLLCGSDGLPHLIVNGDQRHWGEFITPGILFLYIAGWIGWVGRSYLI 180

Query: 181 AIRDDKKPTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNGELIAKDV 228
           AI  +KKP  KEIIIDVPLA+ ++FRGF WP+AAYRE +NG+LIAKDV
Sbjct: 181 AISGEKKPAMKEIIIDVPLASRIIFRGFIWPVAAYREFLNGDLIAKDV 221

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g07060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SHE8	7.8e-86	71.93	Photosystem I reaction center subunit III, chloroplastic OS=Arabidopsis thaliana...	[more]
P46486	1.5e-84	73.68	Photosystem I reaction center subunit III, chloroplastic OS=Flaveria trinervia O...	[more]
P12355	4.4e-81	72.05	Photosystem I reaction center subunit III, chloroplastic OS=Spinacia oleracea OX...	[more]
P13192	2.1e-75	67.27	Photosystem I reaction center subunit III, chloroplastic OS=Hordeum vulgare OX=4...	[more]
P12356	3.6e-51	51.40	Photosystem I reaction center subunit III, chloroplastic OS=Chlamydomonas reinha...	[more]

BLAST of Cp4.1LG09g07060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023542340.1	1.00e-155	100.00	photosystem I reaction center subunit III, chloroplastic [Cucurbita pepo subsp. ...	[more]
XP_022955103.1	2.87e-155	99.56	photosystem I reaction center subunit III, chloroplastic [Cucurbita moschata]	[more]
XP_022994929.1	2.77e-150	98.24	photosystem I reaction center subunit III, chloroplastic [Cucurbita maxima]	[more]
XP_004150631.1	1.41e-143	92.51	photosystem I reaction center subunit III, chloroplastic [Cucumis sativus] >KGN6...	[more]
XP_038895167.1	9.52e-142	91.63	photosystem I reaction center subunit III, chloroplastic [Benincasa hispida]	[more]

BLAST of Cp4.1LG09g07060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GT12	1.39e-155	99.56	PSI-F OS=Cucurbita moschata OX=3662 GN=LOC111457171 PE=3 SV=1	[more]
A0A6J1K487	1.34e-150	98.24	PSI-F OS=Cucurbita maxima OX=3661 GN=LOC111490506 PE=3 SV=1	[more]
A0A0A0M3X2	6.83e-144	92.51	PSI-F OS=Cucumis sativus OX=3659 GN=Csa_1G714680 PE=3 SV=1	[more]
A0A5D3E1S6	1.17e-140	91.19	PSI-F OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold129G00570 PE=3 SV=...	[more]
A0A1S3C8V6	1.17e-140	91.19	PSI-F OS=Cucumis melo OX=3656 GN=LOC103498296 PE=3 SV=1	[more]

BLAST of Cp4.1LG09g07060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G31330.1	5.5e-87	71.93	photosystem I subunit F	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036577	Photosystem I PsaF, reaction centre subunit III superfamily	GENE3D	1.10.8.110	Photosystem I PsaF, reaction centre subunit III	coord: 74..227 e-value: 1.3E-73 score: 247.7
IPR036577	Photosystem I PsaF, reaction centre subunit III superfamily	SUPERFAMILY	81536	Subunit III of photosystem I reaction centre, PsaF	coord: 74..226
IPR003666	Photosystem I PsaF, reaction centre subunit III	PFAM	PF02507	PSI_PsaF	coord: 61..226 e-value: 9.3E-81 score: 269.8
IPR003666	Photosystem I PsaF, reaction centre subunit III	PANTHER	PTHR34939	PHOTOSYSTEM I REACTION CENTER SUBUNIT III, CHLOROPLASTIC	coord: 1..227

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG09g07060.1	Cp4.1LG09g07060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009538	photosystem I reaction center
cellular_component	GO:0009522	photosystem I