Cp4.1LG09g06400 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG09g06400
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG09: 4856438 .. 4856788 (-)
RNA-Seq ExpressionCp4.1LG09g06400
SyntenyCp4.1LG09g06400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAACTGCATCATCTTGCCTTGCGTTCACTCGCCATCGAAGAACCTTTCCCCCGAGTTAGCTACAGTGGTCGATTCCGCAACTGAACAAGGCAACGACCCTCTTCTCGATGTTGTTCCATGCTTGAAAGAGCTCGAAAATCTTCTGGTTTACTTGAAGACAGCGTACTCGAGTGGAGGAGGAGCAAGGGAGGTGAAAATTGTTGTTACTAGGGAACAGTTTAAGTTGCTGTTGGCAAATGCAAAGAAGATGCAATCTGCATATAGATTGTTGAGCTATAGAGGACCCGGTAGAGGGCGTCGAAAATGGCGGCCGATGCTGTCTGTAATCTCGGAGGAAGAAGAGTAG

mRNA sequence

ATGGGAAACTGCATCATCTTGCCTTGCGTTCACTCGCCATCGAAGAACCTTTCCCCCGAGTTAGCTACAGTGGTCGATTCCGCAACTGAACAAGGCAACGACCCTCTTCTCGATGTTGTTCCATGCTTGAAAGAGCTCGAAAATCTTCTGGTTTACTTGAAGACAGCGTACTCGAGTGGAGGAGGAGCAAGGGAGGTGAAAATTGTTGTTACTAGGGAACAGTTTAAGTTGCTGTTGGCAAATGCAAAGAAGATGCAATCTGCATATAGATTGTTGAGCTATAGAGGACCCGGTAGAGGGCGTCGAAAATGGCGGCCGATGCTGTCTGTAATCTCGGAGGAAGAAGAGTAG

Coding sequence (CDS)

ATGGGAAACTGCATCATCTTGCCTTGCGTTCACTCGCCATCGAAGAACCTTTCCCCCGAGTTAGCTACAGTGGTCGATTCCGCAACTGAACAAGGCAACGACCCTCTTCTCGATGTTGTTCCATGCTTGAAAGAGCTCGAAAATCTTCTGGTTTACTTGAAGACAGCGTACTCGAGTGGAGGAGGAGCAAGGGAGGTGAAAATTGTTGTTACTAGGGAACAGTTTAAGTTGCTGTTGGCAAATGCAAAGAAGATGCAATCTGCATATAGATTGTTGAGCTATAGAGGACCCGGTAGAGGGCGTCGAAAATGGCGGCCGATGCTGTCTGTAATCTCGGAGGAAGAAGAGTAG

Protein sequence

MGNCIILPCVHSPSKNLSPELATVVDSATEQGNDPLLDVVPCLKELENLLVYLKTAYSSGGGAREVKIVVTREQFKLLLANAKKMQSAYRLLSYRGPGRGRRKWRPMLSVISEEEE
Homology
BLAST of Cp4.1LG09g06400 vs. NCBI nr
Match: XP_023542404.1 (uncharacterized protein LOC111802317 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 231 bits (590), Expect = 1.23e-74
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0

Query: 1   MGNCIILPCVHSPSKNLSPELATVVDSATEQGNDPLLDVVPCLKELENLLVYLKTAYSSG 60
           MGNCIILPCVHSPSKNLSPELATVVDSATEQGNDPLLDVVPCLKELENLLVYLKTAYSSG
Sbjct: 136 MGNCIILPCVHSPSKNLSPELATVVDSATEQGNDPLLDVVPCLKELENLLVYLKTAYSSG 195

Query: 61  GGAREVKIVVTREQFKLLLANAKKMQSAYRLLSYRGPGRGRRKWRPMLSVISEEEE 116
           GGAREVKIVVTREQFKLLLANAKKMQSAYRLLSYRGPGRGRRKWRPMLSVISEEEE
Sbjct: 196 GGAREVKIVVTREQFKLLLANAKKMQSAYRLLSYRGPGRGRRKWRPMLSVISEEEE 251

BLAST of Cp4.1LG09g06400 vs. NCBI nr
Match: KGN64995.1 (hypothetical protein Csa_022837 [Cucumis sativus])

HSP 1 Score: 140 bits (352), Expect = 5.68e-40
Identity = 81/139 (58.27%), Postives = 94/139 (67.63%), Query Frame = 0

Query: 1   MGNCIILPCVHSPSKNL-----SPELAT-VVDSATEQGNDPLL----------------- 60
           MGNCI+LP V SP K L     + ELAT +V SATE GNDPLL                 
Sbjct: 1   MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60

Query: 61  DVVPCLKELENLLVYLKTAYSSGGGAREVKIVVTREQFKLLLANAKKMQSAYRLLSYRGP 116
           +VVPCLKELENLL  LK  YS   GA++VKIVVT+EQFKLLL+NAKK+Q  +RLLSY GP
Sbjct: 61  NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP 120

BLAST of Cp4.1LG09g06400 vs. NCBI nr
Match: XP_038877793.1 (uncharacterized protein LOC120070018 isoform X1 [Benincasa hispida])

HSP 1 Score: 129 bits (324), Expect = 9.34e-36
Identity = 74/121 (61.16%), Postives = 82/121 (67.77%), Query Frame = 0

Query: 13  PSKNLSPELATVVDSATEQGNDPLL-----------------DVVPCLKELENLLVYLKT 72
           P K L  EL    DSATE G DPLL                 ++VPCLKELENLL   K 
Sbjct: 17  PQKKLR-ELEKATDSATECGKDPLLLDFTSPTRTILQVGEVQNIVPCLKELENLLASSKI 76

Query: 73  AYSSGGGAREVKIVVTREQFKLLLANAKKMQSAYRLLSYRGPGRGRRKWRPMLSVISEEE 116
           AYS G GAR+VKIVVT+EQFKLLLANAKK+QS +RLLSY GP +G RKWRP LS ISEEE
Sbjct: 77  AYSDGAGARKVKIVVTKEQFKLLLANAKKLQSRHRLLSYTGPRKGCRKWRPTLSAISEEE 136

BLAST of Cp4.1LG09g06400 vs. NCBI nr
Match: KAA0042344.1 (hypothetical protein E6C27_scaffold795G00420 [Cucumis melo var. makuwa] >TYK15468.1 hypothetical protein E5676_scaffold477G00390 [Cucumis melo var. makuwa])

HSP 1 Score: 123 bits (309), Expect = 2.91e-33
Identity = 73/120 (60.83%), Postives = 81/120 (67.50%), Query Frame = 0

Query: 1   MGNCIILPCVHSPSKNL-----SPELAT-VVDSATEQGNDPLL----------------- 60
           MGNCI+LP V SP K L     +  LAT +V SA+E GNDPLL                 
Sbjct: 1   MGNCIVLPSVRSPQKKLQGLKKATGLATPIVYSASECGNDPLLKYCNSSTKTSLQVGEVR 60

Query: 61  DVVPCLKELENLLVYLKTAYSSGGGAREVKIVVTREQFKLLLANAKKMQSAYRLLSYRGP 97
           +VVPCLKELENLL   K  YS GGGA++VKIVVTREQFKLLLANAKK+QS YRLLSY GP
Sbjct: 61  NVVPCLKELENLLASSKIVYSDGGGAKKVKIVVTREQFKLLLANAKKLQSRYRLLSYTGP 120

BLAST of Cp4.1LG09g06400 vs. NCBI nr
Match: KAG6583721.1 (hypothetical protein SDJN03_19653, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 115 bits (289), Expect = 1.73e-29
Identity = 67/112 (59.82%), Postives = 74/112 (66.07%), Query Frame = 0

Query: 1   MGNCIILPCVHSPSKNL-----SPELATVVDSATEQGNDPLL-----------------D 60
           MGNCI+LPCV SP K L     + +LAT VDSATE  ND LL                 D
Sbjct: 1   MGNCIVLPCVRSPQKKLRGIEKATDLATTVDSATECCNDHLLHDFSSSTRTSLQVGEVRD 60

Query: 61  VVPCLKELENLLVYLKTAYSSGGGAREVKIVVTREQFKLLLANAKKMQSAYR 90
           VVPCLKELE LLV  K  YS G GAR+VKIVVT+EQFKLLLANAKK+QS +R
Sbjct: 61  VVPCLKELEKLLVSSKIVYSDGAGARKVKIVVTKEQFKLLLANAKKLQSRHR 112

BLAST of Cp4.1LG09g06400 vs. ExPASy TrEMBL
Match: A0A0A0LSY9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173150 PE=4 SV=1)

HSP 1 Score: 140 bits (352), Expect = 2.75e-40
Identity = 81/139 (58.27%), Postives = 94/139 (67.63%), Query Frame = 0

Query: 1   MGNCIILPCVHSPSKNL-----SPELAT-VVDSATEQGNDPLL----------------- 60
           MGNCI+LP V SP K L     + ELAT +V SATE GNDPLL                 
Sbjct: 1   MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60

Query: 61  DVVPCLKELENLLVYLKTAYSSGGGAREVKIVVTREQFKLLLANAKKMQSAYRLLSYRGP 116
           +VVPCLKELENLL  LK  YS   GA++VKIVVT+EQFKLLL+NAKK+Q  +RLLSY GP
Sbjct: 61  NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP 120

BLAST of Cp4.1LG09g06400 vs. ExPASy TrEMBL
Match: A0A5D3CW41 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00390 PE=4 SV=1)

HSP 1 Score: 123 bits (309), Expect = 1.41e-33
Identity = 73/120 (60.83%), Postives = 81/120 (67.50%), Query Frame = 0

Query: 1   MGNCIILPCVHSPSKNL-----SPELAT-VVDSATEQGNDPLL----------------- 60
           MGNCI+LP V SP K L     +  LAT +V SA+E GNDPLL                 
Sbjct: 1   MGNCIVLPSVRSPQKKLQGLKKATGLATPIVYSASECGNDPLLKYCNSSTKTSLQVGEVR 60

Query: 61  DVVPCLKELENLLVYLKTAYSSGGGAREVKIVVTREQFKLLLANAKKMQSAYRLLSYRGP 97
           +VVPCLKELENLL   K  YS GGGA++VKIVVTREQFKLLLANAKK+QS YRLLSY GP
Sbjct: 61  NVVPCLKELENLLASSKIVYSDGGGAKKVKIVVTREQFKLLLANAKKLQSRYRLLSYTGP 120

BLAST of Cp4.1LG09g06400 vs. ExPASy TrEMBL
Match: A0A5E4GL56 (PREDICTED: POPTR_0006s01910g OS=Prunus dulcis OX=3755 GN=ALMOND_2B008489 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.50e-04
Identity = 35/87 (40.23%), Postives = 47/87 (54.02%), Query Frame = 0

Query: 30  EQGNDPLLDVVPCLKELENLLVYLKTAYSSGGGAREVKIVVTREQFKLLLANAKKMQSAY 89
           EQG   +  +VP L  L   LV  K  +      +++KIVVTREQ +LLL +A K +S  
Sbjct: 64  EQGE--VYHLVPNLASLGKPLVPSKIVHQESCKRQKIKIVVTREQLELLLKSANKFRSPK 123

Query: 90  RL---LSYRGPGRGRRKWRPMLSVISE 113
            +   LS R    G  KWRP L++I E
Sbjct: 124 EIGVQLSGRSGLEGSPKWRPSLAIIPE 148

BLAST of Cp4.1LG09g06400 vs. ExPASy TrEMBL
Match: A0A251PDS0 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G005300 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.50e-04
Identity = 35/87 (40.23%), Postives = 47/87 (54.02%), Query Frame = 0

Query: 30  EQGNDPLLDVVPCLKELENLLVYLKTAYSSGGGAREVKIVVTREQFKLLLANAKKMQSAY 89
           EQG   +  +VP L  L   LV  K  +      +++KIVVTREQ +LLL +A K +S  
Sbjct: 64  EQGE--VYHLVPNLASLGKPLVPSKIVHQESCKRQKIKIVVTREQLELLLKSANKFRSPK 123

Query: 90  RL---LSYRGPGRGRRKWRPMLSVISE 113
            +   LS R    G  KWRP L++I E
Sbjct: 124 EIGVQLSGRSGLEGSPKWRPSLAIIPE 148

BLAST of Cp4.1LG09g06400 vs. ExPASy TrEMBL
Match: A0A6J5UND5 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS24534 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 2.46e-04
Identity = 32/78 (41.03%), Postives = 43/78 (55.13%), Query Frame = 0

Query: 39  VVPCLKELENLLVYLKTAYSSGGGAREVKIVVTREQFKLLLANAKKMQSAYRL---LSYR 98
           +VP L  L   LV  K  +      +++KIVVTREQ +LLL +A K +S   +   LS R
Sbjct: 83  IVPNLASLGKPLVPSKIVHQESCKRQKIKIVVTREQLELLLKSANKFRSPKEIGVQLSGR 142

Query: 99  GPGRGRRKWRPMLSVISE 113
               G  KWRP L++I E
Sbjct: 143 SGLEGSPKWRPSLAIIPE 160

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_023542404.11.23e-74100.00uncharacterized protein LOC111802317 [Cucurbita pepo subsp. pepo][more]
KGN64995.15.68e-4058.27hypothetical protein Csa_022837 [Cucumis sativus][more]
XP_038877793.19.34e-3661.16uncharacterized protein LOC120070018 isoform X1 [Benincasa hispida][more]
KAA0042344.12.91e-3360.83hypothetical protein E6C27_scaffold795G00420 [Cucumis melo var. makuwa] >TYK1546... [more]
KAG6583721.11.73e-2959.82hypothetical protein SDJN03_19653, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A0A0LSY92.75e-4058.27Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173150 PE=4 SV=1[more]
A0A5D3CW411.41e-3360.83Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5E4GL561.50e-0440.23PREDICTED: POPTR_0006s01910g OS=Prunus dulcis OX=3755 GN=ALMOND_2B008489 PE=4 SV... [more]
A0A251PDS01.50e-0440.23Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G005300 PE=4 SV=1[more]
A0A6J5UND52.46e-0441.03Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS24534 PE=4 S... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG09g06400.1Cp4.1LG09g06400.1mRNA