Cp4.1LG09g02800 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG09g02800
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	ATP-dependent Clp protease adapter protein CLPS1
Location	Cp4.1LG09: 1670258 .. 1673729 (+)
RNA-Seq Expression	Cp4.1LG09g02800
Synteny	Cp4.1LG09g02800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGATTATCAAACGACGTCGTTTCTAGAATCTCCTTTTCGTCTTCCTCCTCCCTCGGCTTTTCGCAGTTCCTCCTCTGAAAACGAATCAGTCCACTTCCATTTTTCCTATTTTCTCCTTTGAATTTTGTAATCTTTTGAAGAAATTAGAAGAATTATTCCTCATCGGAACCGATTTCCGCTTCAGATTGACAGGAAAAGAAGCCATGGAGATTGCGATTTGCGGCAAATTAGCTCTCTCACCCAACCATGTCTTCAACCCCAAACCAGGTACAAGGTTTAATTCACTCTTTTTCTTCATTACTCATTATTAAATCTTCTTTGATTCTACTTATTTTCATCCGCCATTGCTGATTCCTCGAGAAATCGTACATCGTCCTTCTAATCTATCTTATTTTCCGAGTGAGTTTGACTTCAATTCTGGGTTTTAATCTTTTAATCCCAACTAAACTTGGTTTATGAACAAGTTTGTTTGCTTTTACTAAGATATTTGATGATCTCAATTGATCTATGGAGTTTCGATTCTTGTGCCATGGTGCCAAGCTTATCTGTTTGCATTGAGCTGATTGGAATATTTGATTGCGAAGGGCCAGCAACTGTAAGGAATGTACCATAAGACCAAAAAGTGCAATATTTTTTTGTGGAAAAGGATTTTCTGTGTATGCTGATATCTTGAATGGATTATATTCCATTGTTCAAGAATCTTCTGTTCTGTGGCATCTTCCTTATCGGATTTTCTGTGTATGCTGATATCTTGAATGGATTATATTCCATTGTTCAAGAATCTTCTGTTCTGTGGCATCTTCCTTATGCTAGATTTATAAAAGAAATTCCTATTTCTATCCTAGTGTGATCTGTAAGCTGCCTAGCATATAGTATCCCTCTTTACTTTCCCATCTTGTGGCTATTCTTCTATTATTCTTTTCCTTTGTACTTTGCTTCGTATGCTTTTTTTTGTTTTGTTCCATATTCTCTTTTGCATATGGCTTAGTTGTCAATCACGTTGGAAGCTGCTTCGTTTCTTGCTATAGATGAACTAATTACTTTCTATTCTTTGGAAGATTTAAGATTACTTTTATTACTTTATGTGAGATCCTACATCGGTATTGGTTGAGGAGGAAAACAAAACATTCTTTGTAAGGGTGTTGAAACCTCTTCCTAGCAAACGCGTTTTAAAACCTTGAGGGGAAATCCAGAAGAACAATATCTGCTAGCGGTGGGCTTGGACAGTTACAAATGGTATCAGAGCCAAACATTAGGCTCCTCGTCAAAGGGGGATAGGCACGAGACAGTGTGCCAATAAGGATGCTGGGCCCCGAAGGGAGGTGGATTGGGGGGTCCCACATCAATTGGAGAAGGGGACGAGTGACAGCAAGGACGTTGGCCCCAAAAGGGGGTGGATTGGGGGGTCCCACATCGATTGGAGAAGGGGACGAGTGCTAGGACGTTAGCCCCAAAAGGGGGTGGATTGTGAGATCCCACGTCGGTTGGGGAGGAGAACGAAGCATTTTTTTATATGGGTGTGGAAACCTCTCCCTAGCATATGTGTTTTAAAAACCTTGAGGGGAAGTTCGGTAGGGAAAGCCCATAAATGACAATATCTGATAGTGGTGGGCTTAGGCTGTTACACTTTATTTGCTCGGAGATATTTCTATGATTTGATTCTTCTCCTTTTACAACTTTATCATAATTTTCAAAGTGCAGCACTATGACTAGATTAGCAATGGATAATATTAGCTTCTTATAAAAGTTTCATTTCAGGGGACAGAAGTTCTGTCTGTAAAGGGCTATGCTCAACCCTTTGTGCATCCGTTGTTAAATCAGCAACAACAGCAGGAAGAGGAGGAGGAGGGTTGTTGGAGAGGCCTGTTATTGAGAAAGCCACTCCTGGAAGAGAATCTGAGTTTGATTTGAGGTACTAAACATTAGACCCTATGGTTATGTATTATGTATTGAAAAAGATTACTATATACTGATCTAGAAAAGGGGACAAGGAAAGAATAAAGTATACCAGTTAAAGCCCTTAAAGAGATCAACAGATTCTGGTGTAGGGTCGTCCGAAGACTAACGGTTAGATGGTTTTTCGCTAATCTTTACAATTCGAATTCTAAATCAAGACTACTACTCTTTAGCAATGTGTCTCCTTACATGTATGAATCTCTTTGTATCGCCAATGCAATGGTGGGTATGATTTTAGAGACATGGTCATCTTATTAGCCATGTGCCATGTTGAACTTTATGTGGGAAAACCGAAAAAAACAAAGTTAGAGGTTGAAACCATTGAACTTGCTTATGTTCCCAAGGTTGAAACCACTGAACTTGCTTATGTTCCCAAGGTTGAACCCACTGAACTTGCTTATGTTCCCGAGGTTGAAACTACTGAACTTGCTTATGCTCCTGAAAGTCAGAGGTTGAAACTACTAAACTTGCTTATGCTCCCGAAAGTCAGAGGTTGAAACTACTGAATTTGCTTATGCTCCCGAAAGTTAGGGGTTGAAACCACTGAACTTACTTATGTTCCCGAAAGTCAGAGGTTAAAACCACTGAAGTTGCTTATGCTCCCGAGTGCATCCTTTTATATATATACATATATATGAAACAAAGCATTCATTTTTGGAGTTGGTCTTGTTCTTGTACCTTTACCTGACTGTCGTTAACTAAATACATTGAGCTTTGTATTCTGAAGGCTAAATGAATGGCATTAGAAGTATTGCAGTTGAAGTAAAGGAGAAAAAACGAGTGGTATGAGCCTGAACTGCAATGATCGAAAATCGCTGGTTTTTTCTTGTTTTTGACTGTTAAAACGGAACCGAGCGGGCTAAGTTCATGCAACTTAGGCAGACATCTGGTTATAAGTTGATGTTTAATCTAGTTTTGAATGTTACATTGCACAACTGCATTGGTTTCATTGCTCTCTGTTGGATTGTTCAGGAGATCAAGGAAAACGACGCCACCATACCGTGTGATTCTGCATAACGACGACTTCAACAGACGAGAATACGTGGTTCAAGTCCTGATGAAAGTGATTCCTGGAATGACACTGGACAATGCTGTTAACATCATGCAAGAAGCACACTGCAATGGCTTGTCACTGGTGATCATTTGTGCGCAGGCCGATGCTGAAGAACACTGCACGCAGCTCAGAGGCAATGGGCTGTTGAGTTCAATTGAACCAGCGAGTGGCGGGTGCTGCTGAACTTCTTCATCCACTGGGTTATACGTTTATGGTGTATGTAAGTTAGTCTTCATAACCAAAGGCATGGAGATAGGTAGGAAACTGGTATAATATAAGTATTGGACAACTCTTACTATATTTTCTTTGTTTTTGGAGTAAAAAAAAACTTTTTATTTTTTATTTTTTTTTATGTTCGACATGAGAGGTGAATTTACATTTTCATTATATTATAGTAAAATCGATGAAAAATGTCGATAAAATATCACTAATCCTACATTAATATTAATAATAAAGAATTTA

mRNA sequence

CGATTATCAAACGACGTCGTTTCTAGAATCTCCTTTTCGTCTTCCTCCTCCCTCGGCTTTTCGCAGTTCCTCCTCTGAAAACGAATCAGTCCACTTCCATTTTTCCTATTTTCTCCTTTGAATTTTGTAATCTTTTGAAGAAATTAGAAGAATTATTCCTCATCGGAACCGATTTCCGCTTCAGATTGACAGGAAAAGAAGCCATGGAGATTGCGATTTGCGGCAAATTAGCTCTCTCACCCAACCATGTCTTCAACCCCAAACCAGGGGACAGAAGTTCTGTCTGTAAAGGGCTATGCTCAACCCTTTGTGCATCCGTTGTTAAATCAGCAACAACAGCAGGAAGAGGAGGAGGAGGGTTGTTGGAGAGGCCTGTTATTGAGAAAGCCACTCCTGGAAGAGAATCTGAGTTTGATTTGAGGAGATCAAGGAAAACGACGCCACCATACCGTGTGATTCTGCATAACGACGACTTCAACAGACGAGAATACGTGGTTCAAGTCCTGATGAAAGTGATTCCTGGAATGACACTGGACAATGCTGTTAACATCATGCAAGAAGCACACTGCAATGGCTTGTCACTGGTGATCATTTGTGCGCAGGCCGATGCTGAAGAACACTGCACGCAGCTCAGAGGCAATGGGCTGTTGAGTTCAATTGAACCAGCGAGTGGCGGGTGCTGCTGAACTTCTTCATCCACTGGGTTATACGTTTATGGTGTATGTAAGTTAGTCTTCATAACCAAAGGCATGGAGATAGGTAGGAAACTGGTATAATATAAGTATTGGACAACTCTTACTATATTTTCTTTGTTTTTGGAGTAAAAAAAAACTTTTTATTTTTTATTTTTTTTTATGTTCGACATGAGAGGTGAATTTACATTTTCATTATATTATAGTAAAATCGATGAAAAATGTCGATAAAATATCACTAATCCTACATTAATATTAATAATAAAGAATTTA

Coding sequence (CDS)

ATGGAGATTGCGATTTGCGGCAAATTAGCTCTCTCACCCAACCATGTCTTCAACCCCAAACCAGGGGACAGAAGTTCTGTCTGTAAAGGGCTATGCTCAACCCTTTGTGCATCCGTTGTTAAATCAGCAACAACAGCAGGAAGAGGAGGAGGAGGGTTGTTGGAGAGGCCTGTTATTGAGAAAGCCACTCCTGGAAGAGAATCTGAGTTTGATTTGAGGAGATCAAGGAAAACGACGCCACCATACCGTGTGATTCTGCATAACGACGACTTCAACAGACGAGAATACGTGGTTCAAGTCCTGATGAAAGTGATTCCTGGAATGACACTGGACAATGCTGTTAACATCATGCAAGAAGCACACTGCAATGGCTTGTCACTGGTGATCATTTGTGCGCAGGCCGATGCTGAAGAACACTGCACGCAGCTCAGAGGCAATGGGCTGTTGAGTTCAATTGAACCAGCGAGTGGCGGGTGCTGCTGA

Protein sequence

MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIEKATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTLDNAVNIMQEAHCNGLSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGCC

Homology

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BLAST of Cp4.1LG09g02800 vs. ExPASy Swiss-Prot
Match: Q9SX29 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPLS1 PE=1 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 8.8e-60
Identity = 110/159 (69.18%), Postives = 131/159 (82.39%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIE 60
           ME AICG+LAL+P+ +FN K GD+  V KG C      +  S + A   GGG+L++P+IE
Sbjct: 1   METAICGRLALAPSSLFNSKSGDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPIIE 60

Query: 61  KATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTLDNAVNIMQEA 120
           K TPGRESEFDLR+S+K  PPYRVILHND+FN+REYVVQVLMKVIPGMT+DNAVNIMQEA
Sbjct: 61  KTTPGRESEFDLRKSKKIAPPYRVILHNDNFNKREYVVQVLMKVIPGMTVDNAVNIMQEA 120

Query: 121 HCNGLSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGC 160
           H NGL++VI+CAQADAE+HC QLRGNGLLSS+EP  GGC
Sbjct: 121 HINGLAVVIVCAQADAEQHCMQLRGNGLLSSVEPDGGGC 159

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BLAST of Cp4.1LG09g02800 vs. ExPASy Swiss-Prot
Match: A0A2K3CNL6 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=CLPS1 PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.2e-21
Identity = 53/109 (48.62%), Postives = 77/109 (70.64%), Query Frame = 0


Query: 51  GGLLERPVIEKATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTL 110
           GG+++ P     T  ++    + RS+K  P Y+V+LHND++N+REYVV+VL+KV+  +T+
Sbjct: 61  GGVMDAP-----TTTQQPASGVERSQKRPPIYKVLLHNDNYNKREYVVKVLLKVVEQITV 120

Query: 111 DNAVNIMQEAHCNGLSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGC 160
           D+AV  MQEAH  G++LV+ C Q +AE +C  LR NGL S+IEP  GGC
Sbjct: 121 DDAVTCMQEAHETGVALVVACPQDNAERYCEGLRLNGLTSTIEP--GGC 162

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BLAST of Cp4.1LG09g02800 vs. ExPASy Swiss-Prot
Match: Q31QE7 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=clpS PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.4e-19
Identity = 47/79 (59.49%), Postives = 55/79 (69.62%), Query Frame = 0


Query: 76  RKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTLDNAVNIMQEAHCNGLSLVIICAQAD 135
           RK  P YRV+LHNDDFN  EYVV VLM+ +P +T   AV+IM EAH NG  LVI C    
Sbjct: 15  RKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLVITCDIEP 74

Query: 136 AEEHCTQLRGNGLLSSIEP 155
           AE +C QL+ +GL SSIEP
Sbjct: 75  AEFYCEQLKSHGLSSSIEP 93

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BLAST of Cp4.1LG09g02800 vs. ExPASy Swiss-Prot
Match: Q5N3U1 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=clpS PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.6e-16
Identity = 42/73 (57.53%), Postives = 50/73 (68.49%), Query Frame = 0


Query: 76  RKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTLDNAVNIMQEAHCNGLSLVIICAQAD 135
           RK  P YRV+LHNDDFN  EYVV VLM+ +P +T   AV+IM EAH NG  LVI C    
Sbjct: 15  RKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLVITCDIEP 74

Query: 136 AEEHCTQLRGNGL 149
           AE +C QL+ +GL
Sbjct: 75  AEFYCEQLKSHGL 87

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BLAST of Cp4.1LG09g02800 vs. ExPASy Swiss-Prot
Match: Q3AUR5 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain CC9902) OX=316279 GN=clpS PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.3e-14
Identity = 41/94 (43.62%), Postives = 58/94 (61.70%), Query Frame = 0


Query: 63  TPGRESEFDL--RRSRKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTLDNAVNIMQEA 122
           +PG  +  D    R RK +P Y+V+LHND  N  EYV+  L +V+P ++  +A+ +M EA
Sbjct: 9   SPGGAAVLDKAPERVRKRSPRYKVLLHNDPVNSMEYVMTTLRQVVPQLSEQDAMAVMLEA 68

Query: 123 HCNGLSLVIICAQADAEEHCTQLRGNGLLSSIEP 155
           H  G+ LVI+C    AE +C  L+  GL SSIEP
Sbjct: 69  HNTGVGLVIVCDIEPAEFYCETLKSKGLTSSIEP 102

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BLAST of Cp4.1LG09g02800 vs. NCBI nr
Match: XP_023542987.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 326 bits (836), Expect = 1.17e-112
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIE 60
           MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIE
Sbjct: 1   MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIE 60

Query: 61  KATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTLDNAVNIMQEA 120
           KATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTLDNAVNIMQEA
Sbjct: 61  KATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTLDNAVNIMQEA 120

Query: 121 HCNGLSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGCC 160
           HCNGLSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGCC
Sbjct: 121 HCNGLSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGCC 160

[Close]

BLAST of Cp4.1LG09g02800 vs. NCBI nr
Match: XP_022968529.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 324 bits (830), Expect = 9.61e-112
Identity = 159/160 (99.38%), Postives = 159/160 (99.38%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIE 60
           MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIE
Sbjct: 1   MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIE 60

Query: 61  KATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTLDNAVNIMQEA 120
           KATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTLDNAVNIMQEA
Sbjct: 61  KATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTLDNAVNIMQEA 120

Query: 121 HCNGLSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGCC 160
           HCNGLSLVIICAQADAEEHC QLRGNGLLSSIEPASGGCC
Sbjct: 121 HCNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 160

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BLAST of Cp4.1LG09g02800 vs. NCBI nr
Match: XP_022945945.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 324 bits (830), Expect = 9.61e-112
Identity = 158/160 (98.75%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIE 60
           MEIAICGKLALSPNHVFNPKPG+RSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIE
Sbjct: 1   MEIAICGKLALSPNHVFNPKPGERSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIE 60

Query: 61  KATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTLDNAVNIMQEA 120
           KATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTLDNAVNIMQEA
Sbjct: 61  KATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTLDNAVNIMQEA 120

Query: 121 HCNGLSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGCC 160
           HCNG+SLVIICAQADAEEHCTQLRGNGLLSSIEPASGGCC
Sbjct: 121 HCNGMSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGCC 160

[Close]

BLAST of Cp4.1LG09g02800 vs. NCBI nr
Match: KAG7013044.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 317 bits (813), Expect = 3.64e-109
Identity = 157/160 (98.12%), Postives = 159/160 (99.38%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIE 60
           MEIAICGKLALSPNHVFNPKPG+RSSVCKGLCSTLCASVVKSATTAGRG GGLLERPVIE
Sbjct: 1   MEIAICGKLALSPNHVFNPKPGERSSVCKGLCSTLCASVVKSATTAGRG-GGLLERPVIE 60

Query: 61  KATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTLDNAVNIMQEA 120
           KATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTLDNAVNIMQEA
Sbjct: 61  KATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTLDNAVNIMQEA 120

Query: 121 HCNGLSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGCC 160
           HCNG+SLVIICAQADAEEHCTQLRGNGLLSSIEPASGGCC
Sbjct: 121 HCNGMSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGCC 159

[Close]

BLAST of Cp4.1LG09g02800 vs. NCBI nr
Match: XP_038891525.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X2 [Benincasa hispida])

HSP 1 Score: 302 bits (774), Expect = 3.22e-103
Identity = 151/160 (94.38%), Postives = 153/160 (95.62%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIE 60
           MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCS   ASVVKSA TAGRG GGLLERPVIE
Sbjct: 1   MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSNFGASVVKSAPTAGRG-GGLLERPVIE 60

Query: 61  KATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTLDNAVNIMQEA 120
           KATPGRESEFDLR+SRK TPPYRVILHNDDFN+REYVVQVLMKVIPGMTLDNAVNIMQEA
Sbjct: 61  KATPGRESEFDLRKSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEA 120

Query: 121 HCNGLSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGCC 160
           HCNGLSLVIICAQADAEEHC QLRGNGLLSSIEPASGGCC
Sbjct: 121 HCNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 159

[Close]

BLAST of Cp4.1LG09g02800 vs. ExPASy TrEMBL
Match: A0A6J1HZX0 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111467734 PE=4 SV=1)

HSP 1 Score: 324 bits (830), Expect = 4.65e-112
Identity = 159/160 (99.38%), Postives = 159/160 (99.38%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIE 60
           MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIE
Sbjct: 1   MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIE 60

Query: 61  KATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTLDNAVNIMQEA 120
           KATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTLDNAVNIMQEA
Sbjct: 61  KATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTLDNAVNIMQEA 120

Query: 121 HCNGLSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGCC 160
           HCNGLSLVIICAQADAEEHC QLRGNGLLSSIEPASGGCC
Sbjct: 121 HCNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 160

[Close]

BLAST of Cp4.1LG09g02800 vs. ExPASy TrEMBL
Match: A0A6J1G2F4 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111450035 PE=4 SV=1)

HSP 1 Score: 324 bits (830), Expect = 4.65e-112
Identity = 158/160 (98.75%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIE 60
           MEIAICGKLALSPNHVFNPKPG+RSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIE
Sbjct: 1   MEIAICGKLALSPNHVFNPKPGERSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIE 60

Query: 61  KATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTLDNAVNIMQEA 120
           KATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTLDNAVNIMQEA
Sbjct: 61  KATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTLDNAVNIMQEA 120

Query: 121 HCNGLSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGCC 160
           HCNG+SLVIICAQADAEEHCTQLRGNGLLSSIEPASGGCC
Sbjct: 121 HCNGMSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGCC 160

[Close]

BLAST of Cp4.1LG09g02800 vs. ExPASy TrEMBL
Match: A0A6J1DBL1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111018609 PE=3 SV=1)

HSP 1 Score: 296 bits (758), Expect = 4.30e-101
Identity = 146/160 (91.25%), Postives = 155/160 (96.88%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIE 60
           MEIAICGKLALSPNHVFNP+PGD++ VC+GLCS+L A++VKSATTAG+G GGLLERPVIE
Sbjct: 1   MEIAICGKLALSPNHVFNPQPGDKNCVCRGLCSSLGAAIVKSATTAGKG-GGLLERPVIE 60

Query: 61  KATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTLDNAVNIMQEA 120
           KATPGRESEFDLRRSRKTTPPYRVILHNDDFN+REYVVQVLMKVIPGMTLDNAVNIMQEA
Sbjct: 61  KATPGRESEFDLRRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEA 120

Query: 121 HCNGLSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGCC 160
           H NGLSLVIICAQADAEEHC QLRGNGLLSSIEPASGGCC
Sbjct: 121 HYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 159

[Close]

BLAST of Cp4.1LG09g02800 vs. ExPASy TrEMBL
Match: A0A5A7STJ9 (ATP-dependent Clp protease adapter protein CLPS1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00780 PE=3 SV=1)

HSP 1 Score: 294 bits (753), Expect = 2.49e-100
Identity = 147/160 (91.88%), Postives = 151/160 (94.38%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIE 60
           MEIAICGKLA+SPNHVFNPKPGDRSS+CKGLC    ASVVKSA TAGRG GGLLERPVIE
Sbjct: 1   MEIAICGKLAVSPNHVFNPKPGDRSSMCKGLCFNFGASVVKSAATAGRG-GGLLERPVIE 60

Query: 61  KATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTLDNAVNIMQEA 120
           KATPGRESEFD+RRSRK TPPYRVILHNDDFN+REYVVQVLMKVIPGMTLDNAVNIMQEA
Sbjct: 61  KATPGRESEFDMRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEA 120

Query: 121 HCNGLSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGCC 160
           H NGLSLVIICAQADAEEHC QLRGNGLLSSIEPASGGCC
Sbjct: 121 HYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 159

[Close]

BLAST of Cp4.1LG09g02800 vs. ExPASy TrEMBL
Match: A0A1S3BG61 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489260 PE=3 SV=1)

HSP 1 Score: 294 bits (753), Expect = 2.49e-100
Identity = 147/160 (91.88%), Postives = 151/160 (94.38%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIE 60
           MEIAICGKLA+SPNHVFNPKPGDRSS+CKGLC    ASVVKSA TAGRG GGLLERPVIE
Sbjct: 1   MEIAICGKLAVSPNHVFNPKPGDRSSMCKGLCFNFGASVVKSAATAGRG-GGLLERPVIE 60

Query: 61  KATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTLDNAVNIMQEA 120
           KATPGRESEFD+RRSRK TPPYRVILHNDDFN+REYVVQVLMKVIPGMTLDNAVNIMQEA
Sbjct: 61  KATPGRESEFDMRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEA 120

Query: 121 HCNGLSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGCC 160
           H NGLSLVIICAQADAEEHC QLRGNGLLSSIEPASGGCC
Sbjct: 121 HYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 159

[Close]

BLAST of Cp4.1LG09g02800 vs. TAIR 10
Match: AT1G68660.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 231.1 bits (588), Expect = 6.2e-61
Identity = 110/159 (69.18%), Postives = 131/159 (82.39%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIE 60
           ME AICG+LAL+P+ +FN K GD+  V KG C      +  S + A   GGG+L++P+IE
Sbjct: 1   METAICGRLALAPSSLFNSKSGDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPIIE 60

Query: 61  KATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTLDNAVNIMQEA 120
           K TPGRESEFDLR+S+K  PPYRVILHND+FN+REYVVQVLMKVIPGMT+DNAVNIMQEA
Sbjct: 61  KTTPGRESEFDLRKSKKIAPPYRVILHNDNFNKREYVVQVLMKVIPGMTVDNAVNIMQEA 120

Query: 121 HCNGLSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGC 160
           H NGL++VI+CAQADAE+HC QLRGNGLLSS+EP  GGC
Sbjct: 121 HINGLAVVIVCAQADAEQHCMQLRGNGLLSSVEPDGGGC 159

[Close]

BLAST of Cp4.1LG09g02800 vs. TAIR 10
Match: AT1G68660.2 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 163.7 bits (413), Expect = 1.2e-40
Identity = 85/159 (53.46%), Postives = 102/159 (64.15%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIE 60
           ME AICG+LAL+P+ +FN K GD+  V KG C      +  S + A   GGG+L++P+IE
Sbjct: 1   METAICGRLALAPSSLFNSKSGDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPIIE 60

Query: 61  KATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTLDNAVNIMQEA 120
           K TPGRESEFDLR+S+K  PPYRVILHND+FN+REYVVQVLMK                 
Sbjct: 61  KTTPGRESEFDLRKSKKIAPPYRVILHNDNFNKREYVVQVLMK----------------- 120

Query: 121 HCNGLSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGC 160
                        ADAE+HC QLRGNGLLSS+EP  GGC
Sbjct: 121 -------------ADAEQHCMQLRGNGLLSSVEPDGGGC 129

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g02800 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SX29	8.8e-60	69.18	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Arabidopsis t...	[more]
A0A2K3CNL6	1.2e-21	48.62	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Chlamydomonas...	[more]
Q31QE7	4.4e-19	59.49	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (stra...	[more]
Q5N3U1	1.6e-16	57.53	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain ATC...	[more]
Q3AUR5	4.3e-14	43.62	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain CC9...	[more]

BLAST of Cp4.1LG09g02800 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023542987.1	1.17e-112	100.00	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita ...	[more]
XP_022968529.1	9.61e-112	99.38	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita ...	[more]
XP_022945945.1	9.61e-112	98.75	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita ...	[more]
KAG7013044.1	3.64e-109	98.13	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Cucurbita argyr...	[more]
XP_038891525.1	3.22e-103	94.38	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X2 ...	[more]

BLAST of Cp4.1LG09g02800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HZX0	4.65e-112	99.38	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbit...	[more]
A0A6J1G2F4	4.65e-112	98.75	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbit...	[more]
A0A6J1DBL1	4.30e-101	91.25	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Momordica cha...	[more]
A0A5A7STJ9	2.49e-100	91.88	ATP-dependent Clp protease adapter protein CLPS1 OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3BG61	2.49e-100	91.88	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 ...	[more]

BLAST of Cp4.1LG09g02800 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68660.1	6.2e-61	69.18	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]
AT1G68660.2	1.2e-40	53.46	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003769	Adaptor protein ClpS, core	PFAM	PF02617	ClpS	coord: 78..145 e-value: 5.5E-18 score: 64.5
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	3.30.1390.10		coord: 76..154 e-value: 5.0E-21 score: 76.3
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	SUPERFAMILY	54736	ClpS-like	coord: 76..154
IPR022935	ATP-dependent Clp protease adaptor protein ClpS	PANTHER	PTHR33473	ATP-DEPENDENT CLP PROTEASE ADAPTER PROTEIN CLPS1, CHLOROPLASTIC	coord: 1..159
None	No IPR available	PANTHER	PTHR33473:SF15	BNAA07G24510D PROTEIN	coord: 1..159

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG09g02800.1	Cp4.1LG09g02800.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030163	protein catabolic process
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008233	peptidase activity