Cp4.1LG09g02230 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG09g02230
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Eukaryotic translation initiation factor 5A
Location	Cp4.1LG09: 1185802 .. 1187513 (-)
RNA-Seq Expression	Cp4.1LG09g02230
Synteny	Cp4.1LG09g02230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGACGAGGAGCACCACTTTGAGTCGAAGGCCGACGCGGGAGCTTCCAAGACTTTTCCGCAGCAGGCTGGAACCATCCGTAAGAATGGTTACATAGTCATCAAGGGCAGGCCTTGCAAGGTTTATTTCGTTTTCATTCTTATTCCTCAATTCGCTCCGATCCTTTGCCCCATCTATCCATGTAATTCTTGTTTAACATGTGATATCTATGCGTTATATCTTCTGCTTCAATTTTCCTATTCTTGTTGCCCTATTAATATAGCTTTTTCAAGGGTTATTCTGTATTCAATCTTGTTCTGTGATTTTCGGTTAATTGTGTTTCTTTGATTTTCTATGATTTTACTTTTAGATTTTTTTTTCCATAGATCACATGTTTGCTAGAATGAAACGAATGAATCGGTTGAAGCTACCATATTTCGATCTGTTTCTCTCTAGGGCTTTTGTCTTTCGTGGTTTCTGCATATTATTTGTTATGTTGTATTTATGTTCTTCAATTAGCAATCTTGGCCAAAGACTTATGCATTGCTGTTTTGTAGGTTGTTGAGGTTTCAACCTCAAAGACGGGAAAGCATGGACATGCTAAATGCCACTTTGTTGCCATTGACATTTTCACTTCTAAAAAGCTTGAAGATATCGTCCCCTCTTCACACAACTGTGATGTATGAAGATTCTTTTTCCTTTCCGTTTTATACTTTTCCAGCAGGTTAGGTTTGTTTGTGCAAGTTTATGATTTCTGATTCTTGTAATCGTAAAACACAGGTTCCCCATGTCAACCGTACTGACTACCAGCTCATTGATATCTCTGAGGATGGATTTGTATGATCAAATTCTCTTTCTTTAGATCTTTGTCTCAGTTTCACTTACTCATCCATCCATTTTGAGTACTGCAGCTAATTCTAATTTCAATGAAAACTTACCAGATTAGCCTGCTGACGGACAGTGGTAACACCAAGGATGACCTGAGGCTTCCATCGGATGAGAGTCTGCTGTCCCAGGTACGATTTTCTTATTGGCTGTTGACATTTTCTTGTCCTGCTGTGTTCAATTTGTCTTTAATTGCCTTGTGAAGACCACATTGCTTGTTAGGCCGAAACTATTTATTTCCTCCACTCCTTACAGTATATTATCCGGTACTTGTTTGGAGTTCTAAATGTGGATGGCTGACTATTTTTACTACCCCCTCCTTTATTATGCTTATGGGTTTGGATTTCTAGCGAAAATGTGTTAAAACGTCGATGATATAGTATGTCGATGATTAACTAACAAGAATTTCACATAATTGATAGATAGAAGAAGAACCCATGATTCCAAACCAATCACCTTTGGAGCTTTTCTATATAAAGATCAAATCTAATTATATGAGTGTCTAATATTGATATCTTGTGCTTAGTACTAACCTCTAGGAGTGTCTAATATTTGATATCTTGTGCTTAGTACTAACCTCTAGGGGGCTGATTAAGGAGTTATTTTATGAATAATTTTATGTTCATCTGCAAGTTTTCCGTTCCTTGCACGTTGGGGTCTTATTCGGAAGAACAATAGCTGCCATAGGCTATGAGTGGCATAATTTTGAAGATTGATTGTGTTGTACCTTGTGGCTCATGCAGATCAAGGATGGCTTTGCGGAGGGGAAGGATCTGATTGTGACTGTCATGTCTTCAATGGGAGAGGAGCAAATCTGCGCTCTCAAGGACATTGGCCCAAAATAG

mRNA sequence

ATGTCGGACGAGGAGCACCACTTTGAGTCGAAGGCCGACGCGGGAGCTTCCAAGACTTTTCCGCAGCAGGCTGGAACCATCCGTAAGAATGGTTACATAGTCATCAAGGGCAGGCCTTGCAAGGTTGTTGAGGTTTCAACCTCAAAGACGGGAAAGCATGGACATGCTAAATGCCACTTTGTTGCCATTGACATTTTCACTTCTAAAAAGCTTGAAGATATCGTCCCCTCTTCACACAACTGTGATGTTCCCCATGTCAACCGTACTGACTACCAGCTCATTGATATCTCTGAGGATGGATTTATTAGCCTGCTGACGGACAGTGGTAACACCAAGGATGACCTGAGGCTTCCATCGGATGAGAGTCTGCTGTCCCAGATCAAGGATGGCTTTGCGGAGGGGAAGGATCTGATTGTGACTGTCATGTCTTCAATGGGAGAGGAGCAAATCTGCGCTCTCAAGGACATTGGCCCAAAATAG

Coding sequence (CDS)

ATGTCGGACGAGGAGCACCACTTTGAGTCGAAGGCCGACGCGGGAGCTTCCAAGACTTTTCCGCAGCAGGCTGGAACCATCCGTAAGAATGGTTACATAGTCATCAAGGGCAGGCCTTGCAAGGTTGTTGAGGTTTCAACCTCAAAGACGGGAAAGCATGGACATGCTAAATGCCACTTTGTTGCCATTGACATTTTCACTTCTAAAAAGCTTGAAGATATCGTCCCCTCTTCACACAACTGTGATGTTCCCCATGTCAACCGTACTGACTACCAGCTCATTGATATCTCTGAGGATGGATTTATTAGCCTGCTGACGGACAGTGGTAACACCAAGGATGACCTGAGGCTTCCATCGGATGAGAGTCTGCTGTCCCAGATCAAGGATGGCTTTGCGGAGGGGAAGGATCTGATTGTGACTGTCATGTCTTCAATGGGAGAGGAGCAAATCTGCGCTCTCAAGGACATTGGCCCAAAATAG

Protein sequence

MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTDSGNTKDDLRLPSDESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK

Homology

[Close]

BLAST of Cp4.1LG09g02230 vs. ExPASy Swiss-Prot
Match: P24922 (Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia OX=4092 GN=EIF-5A2 PE=2 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 3.6e-82
Identity = 145/159 (91.19%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEH FESKADAGASKT+PQQAGTIRKNG+IVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKNGHIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTDSGNTKDDLRLPSD 120
           VAIDIFT KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF+SLLT++GNTKDDLRLP+D
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 ESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           ++LL+QIKDGFAEGKDL+V+VMS+MGEEQICALKDIGPK
Sbjct: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159

[Close]

BLAST of Cp4.1LG09g02230 vs. ExPASy Swiss-Prot
Match: P56336 (Eukaryotic translation initiation factor 5A-4 OS=Solanum tuberosum OX=4113 GN=EIF5A4 PE=2 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 6.2e-82
Identity = 147/159 (92.45%), Postives = 156/159 (98.11%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEH FESKADAGASKT+PQQAGTIRK+GYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKSGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTDSGNTKDDLRLPSD 120
           VAIDIFT KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF+SLLTD+GNTKDDLRLP+D
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120

Query: 121 ESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           +SLLSQIKDGFAEGKDL+V+VMS+MGEEQI ALKDIGPK
Sbjct: 121 DSLLSQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159

[Close]

BLAST of Cp4.1LG09g02230 vs. ExPASy Swiss-Prot
Match: Q9AXJ4 (Eukaryotic translation initiation factor 5A OS=Manihot esculenta OX=3983 PE=2 SV=2)

HSP 1 Score: 304.3 bits (778), Expect = 8.1e-82
Identity = 144/159 (90.57%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIK RPCKV+EVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVMEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTDSGNTKDDLRLPSD 120
           V IDIF  KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF+SLLT++GNTKDDLRLP+D
Sbjct: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTD 120

Query: 121 ESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           E+LLSQIKDGFAEGKDL+V+VMS+MGEE+IC+LKDIGPK
Sbjct: 121 ENLLSQIKDGFAEGKDLVVSVMSAMGEERICSLKDIGPK 159

[Close]

BLAST of Cp4.1LG09g02230 vs. ExPASy Swiss-Prot
Match: Q9AXQ4 (Eukaryotic translation initiation factor 5A-3 OS=Solanum lycopersicum OX=4081 PE=2 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 1.1e-81
Identity = 147/159 (92.45%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEH FESKADAGASKT+PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTDSGNTKDDLRLPSD 120
           VAIDIFT KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF+SLLTD+GNTKDDLRLP+D
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120

Query: 121 ESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           E+LLS IKDGFAEGKDL+V+VMS+MGEEQI ALKDIGPK
Sbjct: 121 ENLLSLIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159

[Close]

BLAST of Cp4.1LG09g02230 vs. ExPASy Swiss-Prot
Match: P56335 (Eukaryotic translation initiation factor 5A-3 OS=Solanum tuberosum OX=4113 GN=EIF5A3 PE=2 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 9.0e-81
Identity = 144/159 (90.57%), Postives = 153/159 (96.23%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTDSGNTKDDLRLPSD 120
           VAIDIF  KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF+SLLT+SGNTKDDLRLP+D
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTD 120

Query: 121 ESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           ESLL Q+KDGF EGKDL+V+VMS+MGEEQI A+KDIG K
Sbjct: 121 ESLLKQVKDGFQEGKDLVVSVMSAMGEEQINAIKDIGTK 159

[Close]

BLAST of Cp4.1LG09g02230 vs. NCBI nr
Match: XP_023541941.1 (eukaryotic translation initiation factor 5A-4-like [Cucurbita pepo subsp. pepo] >XP_023541942.1 eukaryotic translation initiation factor 5A-4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 320 bits (820), Expect = 2.99e-110
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTDSGNTKDDLRLPSD 120
           VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTDSGNTKDDLRLPSD
Sbjct: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTDSGNTKDDLRLPSD 120

Query: 121 ESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 159
           ESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK
Sbjct: 121 ESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 159

[Close]

BLAST of Cp4.1LG09g02230 vs. NCBI nr
Match: XP_022944889.1 (eukaryotic translation initiation factor 5A-4-like [Cucurbita moschata] >XP_022967964.1 eukaryotic translation initiation factor 5A-4-like [Cucurbita maxima] >KAG6574057.1 Eukaryotic translation initiation factor 5A-4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 319 bits (817), Expect = 8.57e-110
Identity = 158/159 (99.37%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTDSGNTKDDLRLPSD 120
           VAIDIFT+KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTDSGNTKDDLRLPSD
Sbjct: 61  VAIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTDSGNTKDDLRLPSD 120

Query: 121 ESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 159
           ESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK
Sbjct: 121 ESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 159

[Close]

BLAST of Cp4.1LG09g02230 vs. NCBI nr
Match: XP_022957459.1 (eukaryotic translation initiation factor 5A-2-like [Cucurbita moschata] >XP_022989737.1 eukaryotic translation initiation factor 5A-2-like [Cucurbita maxima] >XP_023516204.1 eukaryotic translation initiation factor 5A-2-like [Cucurbita pepo subsp. pepo] >KAG6601458.1 Eukaryotic translation initiation factor 5A-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 314 bits (804), Expect = 8.23e-108
Identity = 154/159 (96.86%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTDSGNTKDDLRLPSD 120
           VAIDIFTSKKLEDIVPSSHNCDVPHV+RTDYQLIDISEDGFISLLTDSGNTKDDLRLP+D
Sbjct: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVSRTDYQLIDISEDGFISLLTDSGNTKDDLRLPND 120

Query: 121 ESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 159
           ESL++QIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK
Sbjct: 121 ESLMTQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 159

[Close]

BLAST of Cp4.1LG09g02230 vs. NCBI nr
Match: XP_038893432.1 (eukaryotic translation initiation factor 5A-4 [Benincasa hispida])

HSP 1 Score: 313 bits (802), Expect = 1.66e-107
Identity = 154/159 (96.86%), Postives = 158/159 (99.37%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTDSGNTKDDLRLPSD 120
           V IDIFT+KKLEDIVPSSHNCDVPHV+RTDYQLIDISEDGFISLLTDSGNTKDDLRLP+D
Sbjct: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVSRTDYQLIDISEDGFISLLTDSGNTKDDLRLPTD 120

Query: 121 ESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 159
           ESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK
Sbjct: 121 ESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 159

[Close]

BLAST of Cp4.1LG09g02230 vs. NCBI nr
Match: XP_010908239.1 (eukaryotic translation initiation factor 5A-2 [Elaeis guineensis])

HSP 1 Score: 311 bits (796), Expect = 1.37e-106
Identity = 150/159 (94.34%), Postives = 158/159 (99.37%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTDSGNTKDDLRLPSD 120
           VAID+FT+KKLEDIVPSSHNCDVPHV RTDYQLIDISEDGF+SLLTDSGNTKDDLRLP+D
Sbjct: 61  VAIDVFTAKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTDSGNTKDDLRLPTD 120

Query: 121 ESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 159
           E+LL+QIKDGFAEGKDL+VTVMS+MGEEQICALKDIGPK
Sbjct: 121 ETLLAQIKDGFAEGKDLVVTVMSAMGEEQICALKDIGPK 159

[Close]

BLAST of Cp4.1LG09g02230 vs. ExPASy TrEMBL
Match: A0A6J1HY83 (Eukaryotic translation initiation factor 5A OS=Cucurbita maxima OX=3661 GN=LOC111467343 PE=3 SV=1)

HSP 1 Score: 319 bits (817), Expect = 4.15e-110
Identity = 158/159 (99.37%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTDSGNTKDDLRLPSD 120
           VAIDIFT+KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTDSGNTKDDLRLPSD
Sbjct: 61  VAIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTDSGNTKDDLRLPSD 120

Query: 121 ESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 159
           ESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK
Sbjct: 121 ESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 159

[Close]

BLAST of Cp4.1LG09g02230 vs. ExPASy TrEMBL
Match: A0A6J1FZE6 (Eukaryotic translation initiation factor 5A OS=Cucurbita moschata OX=3662 GN=LOC111449283 PE=3 SV=1)

HSP 1 Score: 319 bits (817), Expect = 4.15e-110
Identity = 158/159 (99.37%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTDSGNTKDDLRLPSD 120
           VAIDIFT+KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTDSGNTKDDLRLPSD
Sbjct: 61  VAIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTDSGNTKDDLRLPSD 120

Query: 121 ESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 159
           ESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK
Sbjct: 121 ESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 159

[Close]

BLAST of Cp4.1LG09g02230 vs. ExPASy TrEMBL
Match: A0A6J1JGN3 (Eukaryotic translation initiation factor 5A OS=Cucurbita maxima OX=3661 GN=LOC111486732 PE=3 SV=1)

HSP 1 Score: 314 bits (804), Expect = 3.99e-108
Identity = 154/159 (96.86%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTDSGNTKDDLRLPSD 120
           VAIDIFTSKKLEDIVPSSHNCDVPHV+RTDYQLIDISEDGFISLLTDSGNTKDDLRLP+D
Sbjct: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVSRTDYQLIDISEDGFISLLTDSGNTKDDLRLPND 120

Query: 121 ESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 159
           ESL++QIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK
Sbjct: 121 ESLMTQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 159

[Close]

BLAST of Cp4.1LG09g02230 vs. ExPASy TrEMBL
Match: A0A6J1H202 (Eukaryotic translation initiation factor 5A OS=Cucurbita moschata OX=3662 GN=LOC111458852 PE=3 SV=1)

HSP 1 Score: 314 bits (804), Expect = 3.99e-108
Identity = 154/159 (96.86%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTDSGNTKDDLRLPSD 120
           VAIDIFTSKKLEDIVPSSHNCDVPHV+RTDYQLIDISEDGFISLLTDSGNTKDDLRLP+D
Sbjct: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVSRTDYQLIDISEDGFISLLTDSGNTKDDLRLPND 120

Query: 121 ESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 159
           ESL++QIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK
Sbjct: 121 ESLMTQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 159

[Close]

BLAST of Cp4.1LG09g02230 vs. ExPASy TrEMBL
Match: B3TLM2 (Eukaryotic translation initiation factor 5A OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105034691 PE=2 SV=1)

HSP 1 Score: 311 bits (796), Expect = 6.62e-107
Identity = 150/159 (94.34%), Postives = 158/159 (99.37%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTDSGNTKDDLRLPSD 120
           VAID+FT+KKLEDIVPSSHNCDVPHV RTDYQLIDISEDGF+SLLTDSGNTKDDLRLP+D
Sbjct: 61  VAIDVFTAKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTDSGNTKDDLRLPTD 120

Query: 121 ESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 159
           E+LL+QIKDGFAEGKDL+VTVMS+MGEEQICALKDIGPK
Sbjct: 121 ETLLAQIKDGFAEGKDLVVTVMSAMGEEQICALKDIGPK 159

[Close]

BLAST of Cp4.1LG09g02230 vs. TAIR 10
Match: AT1G13950.1 (eukaryotic elongation factor 5A-1 )

HSP 1 Score: 288.5 bits (737), Expect = 3.3e-78
Identity = 139/159 (87.42%), Postives = 153/159 (96.23%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFES +DAGASKT+PQQAGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFES-SDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTDSGNTKDDLRLPSD 120
           VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDG++SLLTD+G+TKDDL+LP+D
Sbjct: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPND 120

Query: 121 ESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           ++LL QIK GF +GKDL+V+VMS+MGEEQI ALKDIGPK
Sbjct: 121 DTLLQQIKSGFDDGKDLVVSVMSAMGEEQINALKDIGPK 158

[Close]

BLAST of Cp4.1LG09g02230 vs. TAIR 10
Match: AT1G69410.1 (eukaryotic elongation factor 5A-3 )

HSP 1 Score: 286.2 bits (731), Expect = 1.6e-77
Identity = 134/159 (84.28%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSD+EHHFES +DAGASKT+PQQAG IRK G+IVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDDEHHFES-SDAGASKTYPQQAGNIRKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTDSGNTKDDLRLPSD 120
           VAIDIFTSKKLEDIVPSSHNCDVPHVNR DYQLIDISEDGF+SLLTD+G+TKDDL+LP+D
Sbjct: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPTD 120

Query: 121 ESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           E+LL+Q+K+GF EGKD++V+VMS+MGEEQ+CALK++GPK
Sbjct: 121 EALLTQLKNGFEEGKDIVVSVMSAMGEEQMCALKEVGPK 158

[Close]

BLAST of Cp4.1LG09g02230 vs. TAIR 10
Match: AT1G26630.1 (Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein )

HSP 1 Score: 265.8 bits (678), Expect = 2.3e-71
Identity = 124/157 (78.98%), Postives = 146/157 (92.99%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSD+EHHFE+ +++GASKT+PQ AG IRK G+IVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDDEHHFEA-SESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTDSGNTKDDLRLPSD 120
           VAIDIFT+KKLEDIVPSSHNCDVPHVNR DYQLIDI+EDGF+SLLTDSG TKDDL+LP+D
Sbjct: 61  VAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTD 120

Query: 121 ESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIG 158
           + L +Q++ GF EGKD++V+VMSSMGEEQICA+K++G
Sbjct: 121 DGLTAQMRLGFDEGKDIVVSVMSSMGEEQICAVKEVG 156

[Close]

BLAST of Cp4.1LG09g02230 vs. TAIR 10
Match: AT1G26630.2 (Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein )

HSP 1 Score: 220.7 bits (561), Expect = 8.4e-58
Identity = 103/127 (81.10%), Postives = 118/127 (92.91%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSD+EHHFE+ +++GASKT+PQ AG IRK G+IVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDDEHHFEA-SESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTDSGNTKDDLRLPSD 120
           VAIDIFT+KKLEDIVPSSHNCDVPHVNR DYQLIDI+EDGF+SLLTDSG TKDDL+LP+D
Sbjct: 61  VAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTD 120

Query: 121 ESLLSQI 128
           + L +Q+
Sbjct: 121 DGLTAQL 126

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g02230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P24922	3.6e-82	91.19	Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia OX=40...	[more]
P56336	6.2e-82	92.45	Eukaryotic translation initiation factor 5A-4 OS=Solanum tuberosum OX=4113 GN=EI...	[more]
Q9AXJ4	8.1e-82	90.57	Eukaryotic translation initiation factor 5A OS=Manihot esculenta OX=3983 PE=2 SV...	[more]
Q9AXQ4	1.1e-81	92.45	Eukaryotic translation initiation factor 5A-3 OS=Solanum lycopersicum OX=4081 PE...	[more]
P56335	9.0e-81	90.57	Eukaryotic translation initiation factor 5A-3 OS=Solanum tuberosum OX=4113 GN=EI...	[more]

BLAST of Cp4.1LG09g02230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023541941.1	2.99e-110	100.00	eukaryotic translation initiation factor 5A-4-like [Cucurbita pepo subsp. pepo] ...	[more]
XP_022944889.1	8.57e-110	99.37	eukaryotic translation initiation factor 5A-4-like [Cucurbita moschata] >XP_0229...	[more]
XP_022957459.1	8.23e-108	96.86	eukaryotic translation initiation factor 5A-2-like [Cucurbita moschata] >XP_0229...	[more]
XP_038893432.1	1.66e-107	96.86	eukaryotic translation initiation factor 5A-4 [Benincasa hispida]	[more]
XP_010908239.1	1.37e-106	94.34	eukaryotic translation initiation factor 5A-2 [Elaeis guineensis]	[more]

BLAST of Cp4.1LG09g02230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HY83	4.15e-110	99.37	Eukaryotic translation initiation factor 5A OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1FZE6	4.15e-110	99.37	Eukaryotic translation initiation factor 5A OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1JGN3	3.99e-108	96.86	Eukaryotic translation initiation factor 5A OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1H202	3.99e-108	96.86	Eukaryotic translation initiation factor 5A OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
B3TLM2	6.62e-107	94.34	Eukaryotic translation initiation factor 5A OS=Elaeis guineensis var. tenera OX=...	[more]

BLAST of Cp4.1LG09g02230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G13950.1	3.3e-78	87.42	eukaryotic elongation factor 5A-1	[more]
AT1G69410.1	1.6e-77	84.28	eukaryotic elongation factor 5A-3	[more]
AT1G26630.1	2.3e-71	78.98	Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein	[more]
AT1G26630.2	8.4e-58	81.10	Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020189	Translation elongation factor, IF5A C-terminal	SMART	SM01376	eIF_5a_2	coord: 85..154 e-value: 3.9E-32 score: 122.8
IPR020189	Translation elongation factor, IF5A C-terminal	PFAM	PF01287	eIF-5a	coord: 85..154 e-value: 1.7E-28 score: 98.5
IPR001884	Translation elongation factor IF5A-like	PIRSF	PIRSF003025	Transl_init_eIF5A	coord: 1..157 e-value: 9.5E-67 score: 221.4
IPR001884	Translation elongation factor IF5A-like	TIGRFAM	TIGR00037	TIGR00037	coord: 18..153 e-value: 3.3E-41 score: 138.1
IPR001884	Translation elongation factor IF5A-like	PANTHER	PTHR11673	TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER	coord: 1..156
None	No IPR available	GENE3D	2.40.50.140		coord: 86..158 e-value: 1.6E-33 score: 116.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR11673:SF42	BNAA07G09420D PROTEIN	coord: 1..156
None	No IPR available	CDD	cd04468	S1_eIF5A	coord: 86..156 e-value: 1.45438E-30 score: 103.771
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 1..85 e-value: 1.9E-43 score: 148.2
IPR019769	Translation elongation factor, IF5A, hypusine site	PROSITE	PS00302	IF5A_HYPUSINE	coord: 50..57
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 15..93
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 86..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG09g02230.1	Cp4.1LG09g02230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045901	positive regulation of translational elongation
biological_process	GO:0045905	positive regulation of translational termination
biological_process	GO:0006413	translational initiation
molecular_function	GO:0043022	ribosome binding
molecular_function	GO:0003746	translation elongation factor activity
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0003723	RNA binding