Cp4.1LG09g00370 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG09g00370
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Vesicle transport protein
Location	Cp4.1LG09: 185038 .. 189093 (+)
RNA-Seq Expression	Cp4.1LG09g00370
Synteny	Cp4.1LG09g00370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTACACATTCACCTTGGAACCCGGGCTCGACTTCGAGAGAGAGAATGAACACGACTCCCTCTTTCTTCCTACTCTACCATCCAAAACAGGTTGATGGTTCAAAGTTCTAGAATAGGGTTCATTTGTCATCCATCATAGAATTAGAATTAAAATCTCATATTGGTTGAAAGTGCTTCATAACTCAAAATTGGCTCGAAAGTGCTTTATTGGTTGAGCCTCTAGCACGTGGGTTTGGTTTACCTACGAGCAATCAGCATTCCTCAAGTCCCACGTCTTCCAGCCAAAGGTCCACCGTCCTCTCGTATCCGAAACTTTGGTCGACACCTTCGAAGACCACGGGAGCTCACCCAATACTGAATTTCCATCAAAATGTGGAAGCTCGGCCTAGCCGTATTTGGCGATGATGAAGAGCGTGGTCAGAGCTTGCTGGACGAAGATTCGGAAGATCTTTGCTCTCTAACTCCTGTACAGGTACTTTAAACAACGATCAGAGAGCTCCACTTGTGGAAATTTTTATGGATTTTGCTTTTTGTTATTTATTATTATTTTTTTTTCAGTTTTCATACTGTGTTGGATTTTTGATGAACAGAGACTATACGGGTTTGGAGGCTGCTTGACCGGGGGCGTGGTCTGCATGATCGTGGTATGAACATTTAAGCGATTTCTTCATTTGATACAATGGCATATATGTTTTTTCTGTATGCATCTTGTGTAAATGGCGAACAGCTTTGATGATAATTTTGGATTTGGACCTAAGTTACGCTCTGGGTATGATCGGTAACTCGGGTTTTCTTTATTTCCATTGATTGTCTTGGGATGTAAATAAGATTTTTATTCTCTCACTATTCACTGGTTGGTCCTTGGGACTTCAAGAATGAATTAAAAAAGCACAACAAACAAGGAAGGTATTATTGATTTGGAATAGAAAGCCAAGGAATTTCCTCTAAGAAGGGAATGCTAAAGAAAAATCAAGTCGCTTGGTTCATTGGGAGATTGTTTCTACCTATTGAAAACGGAGGACTCGAGATTTGGATTTCAATGAAGGAAAACGGACCTTAGTTATCCAATGGATATGGCGGACTTTCTACCGATTCTGATGAGTTGTGGAACGAGACTCAATCCAATATCTATGGAGAGAACAGAGGAGGTTAAGTATAGGAGGGTTAGGTGTTACTGATTTATTGAAGCATTCACTAGAATTGATGTGGCAAATTGAAGGAAAACGTTTTACCTATTATTCTCTTTCTTTGTTGATTTCCAATCAGAGAGTTTTCATGTAATTCACCTTTAGGTGTTGGGAGTTTTTACTCCCTTTATTTCGTTCGCAATGAAATACGTTTCTCTTCTCAAAAAAATTGAAAGATGTTTTTCTCCTTAAAAGAAATGTAAGGAAAGCCTTATTCTAGAGACTTCTGGGTGGGTCGGAAAGGGAAGTCATCTGTTGGGAGGATTTGTTAGAATGTCTGTAGTTTCTGCAGACAAGAAATGACCGTAGGTGAGGCTTGGGAGGATGTTCTTGGAATATGACAACGTTGAGAACCTAACTGACCAGAAATTGGCATTGAGCAAGAAGTTGTTTGCAGCAATCATGTGAGATCCCACCTTGATTAGGGAGGAGAACGAAGCATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAGACGCGTTTTAAAAACCTTGAGGGGAAGTCCGAAAGGGAAAGCCAAAAGAGGATAATACTGGCTAGCGGTGAGCTTGGACTGTTACAAAATGGTATCAAAGCCAGACACCGGGTGATGTGTCAACGAGGAGGCTGAGCCCCGAAGGGGGTGGACGCAAGGCGGTGTGCCACAAGGACGTTGGGCCACGAAAAGGGGTGGATTGGGGGGTCCCACATCGATTGGAGAAAGGAACGAGTGCCAGCAGGGATGTTGGTCTCCGAAGGGGGGGGGGGGGNGATCCCACATCGGTTGGGGAGGAGAACGAAACATTCTTTATAAGGGTGGGCTCCAAAGGGGAGTGAATTGTGAGATCCCACATCGGTTAGGGAGGAGAACGTTTTAATATCCGCTAGCGGTGGGCTTGAGTTGTTACAAATAAGGAAAGAAGCCCTGAGTAAGTTCCCTTCTTTGTGTGGACATTACGTGATGAGGTGTAAATTCAGCTGAGGGGAGGGATTCAAAGGGAACTCATATGGTTTTAAAACCCTGTTAGTGCATCCTTTGTTGCAAAGAAGAAAAGGGACAAAATCGCCTCTTTTTTCCCTGTTACTACTGTTAACTGTGTTGAGAATCTCAACTCAATAAAATGCTGTGCACTTATAAAAGTCAGTAAAAAAGGATGTTATCCCATTGTTATCGAGTAACAGACTTGAGACGAAAGCTAAAATCATATGGGTTAATGCATTAAAAGCAATTTGGGGTTTGCAGTTAGGTGGAAATACATGATTCACAAACAAAAATCTTCTTCAACATTGCATTATCTTAATCGGTAAACAATGAGCCTGTTCGAAAGTTAAAGATAATTGTCAATGACGTAATGCGTTACTGGCTATTTGTCCTGAACCAATGTCATACCCTTTTCACTGCACAGTATCAAACAGATGATTTTGTTCATTGTTCTTTCTTAATCAGTGATATTTTTATCTCATGTTTTTTCCCTCTGAAATCCCATTTGGATTTTTATGATTCTAGAATAACATACCCCATCTCTGTAGTCTTGCTAGCTCTTTTGCTGGAACTGCATTTGATGTGTTTGCTCCATTTTTTTCTTGATGCAGTCACTGCTTGTTTTTGCCAAGCCAATTAAATTTGCTGCACTCTTTACATTTGGCAATGTTCTGGCAGTCGGAAGGTTGGTTAACCAGCTAAATTAGACAGCTCTTTTATAACATTTTTTATGTCAGCAGTTAAGAAGTATTGCTAGGAGCAGCACTTTTGTTTACTTTCATTGCCAATTCATTGTTCTTGTTTGCATCTAATTCTTTTGTAATCTTCTATTTCATAAATTTCCTCAGAAGAAGTCTATTGGTGTACAAACAAAAGGACCCTTTAATGTTTTTTTTTTCACTGTGTTGTTCCTTTTCCTTGAGGTATTAATATTCTAAACCGCCTCTTATTTGGCAGCACAGCTTTCCTCTTTGGACCTGGGCAACAAATGCGAATGATGTTTGATTCAGTTCGTATATATGCAACTGCTATTTACCTGGGATGTGTTGTGCTAGCTCTTATTTGTGCTCTCTTGGTAAGTTACAATTCAAAATGCATATGACATTTGACATCATGGGGGAAAACAGACTTTAATTCCTAGCACACACAGATATTCAATAAACAATCTTCTAGACATCTTTGATATTAGACAGTATGTTGGTCTATTCCACAAAATCTCCCATCAGACCGTTTTAGCATTGTTTTCCTTTAAATCTTGAATAAAACATGTATCAAAATGTTATATGAACTTGAAATGGACCTGCAAACAGTTAATGCCTCATCTTTTAGTTTGTAATTGTGTTTCTTTGCTATTTCTTTTTCATTTTTCAGATCCACAATAAGATCTTGACAGTGATTGCGATGACAAGTGAGATATGTGCACTTATATGGTACGTTTAACGTTTTCATTGACCTTCCTCTGTTTGATTCAAGTTTCTTGAAACTAGAGGATAAAGGCTCTTCTTCGTTGGAAAATGTGTTTAATCATACCTTCCGAGACTTTTCTTGAATCTAAACTAGAATGGGCCATGACTTTCTTGGTTTATCCTGTTCCAGGTATAGTTTGAGCTATATTCCATTTGCCCGGAGGATGGTCTCTGAATTGATGATCCGATTTTGTGACACAGAACTATAGACAATGAAACTTGCGATGATGACTGATGATTCAGTCTCTTCAAGATCTGGGATTTCCTTTTGTCCTTGTTTTTATTTTAGTGAGCACAAAACCAGTTGAAGATTTGTTTTTATTTTTATTTTTTATATTTATTTGTTTTTATTTGTCCACATAAATGTATAATCCAAAGCCAGTTCAATGCTTGTGCTAATCTTCTAATGTAACAGCATTCTTTTCGCAGAATTAACTTAGT

mRNA sequence

TGTACACATTCACCTTGGAACCCGGGCTCGACTTCGAGAGAGAGAATGAACACGACTCCCTCTTTCTTCCTACTCTACCATCCAAAACAGGTTGATGGTTCAAAGTTCTAGAATAGGGTTCATTTGTCATCCATCATAGAATTAGAATTAAAATCTCATATTGGTTGAAAGTGCTTCATAACTCAAAATTGGCTCGAAAGTGCTTTATTGGTTGAGCCTCTAGCACGTGGGTTTGGTTTACCTACGAGCAATCAGCATTCCTCAAGTCCCACGTCTTCCAGCCAAAGGTCCACCGTCCTCTCGTATCCGAAACTTTGGTCGACACCTTCGAAGACCACGGGAGCTCACCCAATACTGAATTTCCATCAAAATGTGGAAGCTCGGCCTAGCCGTATTTGGCGATGATGAAGAGCGTGGTCAGAGCTTGCTGGACGAAGATTCGGAAGATCTTTGCTCTCTAACTCCTGTACAGAGACTATACGGGTTTGGAGGCTGCTTGACCGGGGGCGTGGTCTGCATGATCGTGTTATCCAATGGATATGGCGGACTTTCTACCGATTCTGATGAGTTGTGGAACGAGACTCAATCCAATATCTATGGAGAGAACAGAGGAGTTAGGTGGAAATACATGATTCACAAACAAAAATCTTCTTCAACATTGCATTATCTTAATCGCACAGCTTTCCTCTTTGGACCTGGGCAACAAATGCGAATGATGTTTGATTCAGTTCGTATATATGCAACTGCTATTTACCTGGGATGTGTTGTGCTAGCTCTTATTTGTGCTCTCTTGATCCACAATAAGATCTTGACAGTGATTGCGATGACAAGTGAGATATGTGCACTTATATGGTATAGTTTGAGCTATATTCCATTTGCCCGGAGGATGGTCTCTGAATTGATGATCCGATTTTGTGACACAGAACTATAGACAATGAAACTTGCGATGATGACTGATGATTCAGTCTCTTCAAGATCTGGGATTTCCTTTTGTCCTTGTTTTTATTTTAGTGAGCACAAAACCAGTTGAAGATTTGTTTTTATTTTTATTTTTTATATTTATTTGTTTTTATTTGTCCACATAAATGTATAATCCAAAGCCAGTTCAATGCTTGTGCTAATCTTCTAATGTAACAGCATTCTTTTCGCAGAATTAACTTAGT

Coding sequence (CDS)

ATGTGGAAGCTCGGCCTAGCCGTATTTGGCGATGATGAAGAGCGTGGTCAGAGCTTGCTGGACGAAGATTCGGAAGATCTTTGCTCTCTAACTCCTGTACAGAGACTATACGGGTTTGGAGGCTGCTTGACCGGGGGCGTGGTCTGCATGATCGTGTTATCCAATGGATATGGCGGACTTTCTACCGATTCTGATGAGTTGTGGAACGAGACTCAATCCAATATCTATGGAGAGAACAGAGGAGTTAGGTGGAAATACATGATTCACAAACAAAAATCTTCTTCAACATTGCATTATCTTAATCGCACAGCTTTCCTCTTTGGACCTGGGCAACAAATGCGAATGATGTTTGATTCAGTTCGTATATATGCAACTGCTATTTACCTGGGATGTGTTGTGCTAGCTCTTATTTGTGCTCTCTTGATCCACAATAAGATCTTGACAGTGATTGCGATGACAAGTGAGATATGTGCACTTATATGGTATAGTTTGAGCTATATTCCATTTGCCCGGAGGATGGTCTCTGAATTGATGATCCGATTTTGTGACACAGAACTATAG

Protein sequence

MWKLGLAVFGDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIVLSNGYGGLSTDSDELWNETQSNIYGENRGVRWKYMIHKQKSSSTLHYLNRTAFLFGPGQQMRMMFDSVRIYATAIYLGCVVLALICALLIHNKILTVIAMTSEICALIWYSLSYIPFARRMVSELMIRFCDTEL

Homology

[Close]

BLAST of Cp4.1LG09g00370 vs. ExPASy Swiss-Prot
Match: Q8WV19 (Vesicle transport protein SFT2A OS=Homo sapiens OX=9606 GN=SFT2D1 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 6.9e-08
Identity = 34/87 (39.08%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 100 LNRTAFLFGPGQQMRMMFDSVRIYATAIYLGCVVLALICALLIHNKILTVIAMTSEICAL 159
           L  T FL GP +Q++ MF++ R+ AT + L C +  L  AL  H K L V+    +  ++
Sbjct: 76  LASTCFLMGPVKQLKKMFEATRLLATIVMLLCFIFTLCAALWWHKKGLAVLFCILQFLSM 135

Query: 160 IWYSLSYIPFARRMVSELMIRFCDTEL 187
            WYSLSYIP+AR    + +I+ C + L
Sbjct: 136 TWYSLSYIPYAR----DAVIKCCSSLL 158

[Close]

BLAST of Cp4.1LG09g00370 vs. ExPASy Swiss-Prot
Match: O95562 (Vesicle transport protein SFT2B OS=Homo sapiens OX=9606 GN=SFT2D2 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 6.9e-08
Identity = 34/77 (44.16%), Postives = 45/77 (58.44%), Query Frame = 0


Query: 100 LNRTAFLFGPGQQMRMMFDSVRIYATAIYLGCVVLALICALLIHNKILTVIAMTSEICAL 159
           +  T FL GP +Q++ MF+  R+ AT + L C  L L  A   HNK L +I    +  AL
Sbjct: 77  IGSTIFLMGPVKQLKRMFEPTRLIATIMVLLCFALTLCSAFWWHNKGLALIFCILQSLAL 136

Query: 160 IWYSLSYIPFARRMVSE 177
            WYSLS+IPFAR  V +
Sbjct: 137 TWYSLSFIPFARDAVKK 153

[Close]

BLAST of Cp4.1LG09g00370 vs. ExPASy Swiss-Prot
Match: Q8VD57 (Vesicle transport protein SFT2B OS=Mus musculus OX=10090 GN=Sft2d2 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.6e-07
Identity = 33/77 (42.86%), Postives = 46/77 (59.74%), Query Frame = 0


Query: 100 LNRTAFLFGPGQQMRMMFDSVRIYATAIYLGCVVLALICALLIHNKILTVIAMTSEICAL 159
           +  T FL GP +Q++ MF+  R+ AT + L C  L L C+  + NK L +I    +  AL
Sbjct: 77  IGSTVFLMGPLKQLKRMFEPTRLIATILVLLCFALTL-CSAFLWNKGLALIFCILQSLAL 136

Query: 160 IWYSLSYIPFARRMVSE 177
            WYSLSYIP+AR  V +
Sbjct: 137 TWYSLSYIPYARDAVKK 152

[Close]

BLAST of Cp4.1LG09g00370 vs. ExPASy Swiss-Prot
Match: Q5SSN7 (Vesicle transport protein SFT2A OS=Mus musculus OX=10090 GN=Sft2d1 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 5.9e-07
Identity = 32/75 (42.67%), Postives = 45/75 (60.00%), Query Frame = 0


Query: 100 LNRTAFLFGPGQQMRMMFDSVRIYATAIYLGCVVLALICALLIHNKILTVIAMTSEICAL 159
           L  T FL GP +Q++ MF++ R+ AT I L C+V  L  AL    K L ++    +  ++
Sbjct: 76  LASTCFLMGPVKQLKKMFETTRLLATIIMLLCLVFTLCAALWWRKKGLALLFCILQFLSM 135

Query: 160 IWYSLSYIPFARRMV 175
            WYSLSYIP+AR  V
Sbjct: 136 TWYSLSYIPYARDAV 150

[Close]

BLAST of Cp4.1LG09g00370 vs. ExPASy Swiss-Prot
Match: Q5U3Y5 (Vesicle transport protein SFT2A OS=Rattus norvegicus OX=10116 GN=Sft2d1 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 5.9e-07
Identity = 32/75 (42.67%), Postives = 45/75 (60.00%), Query Frame = 0


Query: 100 LNRTAFLFGPGQQMRMMFDSVRIYATAIYLGCVVLALICALLIHNKILTVIAMTSEICAL 159
           L  T FL GP +Q++ MF++ R+ AT I L C+V  L  AL    K L ++    +  ++
Sbjct: 76  LASTCFLMGPVKQLKKMFETTRLLATIIMLLCLVFTLCAALWWRKKGLALLFCILQFLSM 135

Query: 160 IWYSLSYIPFARRMV 175
            WYSLSYIP+AR  V
Sbjct: 136 TWYSLSYIPYARDAV 150

[Close]

BLAST of Cp4.1LG09g00370 vs. NCBI nr
Match: XP_023541346.1 (vesicle transport protein SFT2B [Cucurbita pepo subsp. pepo])

HSP 1 Score: 249 bits (637), Expect = 7.36e-82
Identity = 136/186 (73.12%), Postives = 146/186 (78.49%), Query Frame = 0


Query: 1   MWKLGLAVFGDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIVLSNGYGGL 60
           MWKLGLAVFGDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIV        
Sbjct: 1   MWKLGLAVFGDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIV-------- 60

Query: 61  STDSDELWNETQSNIYGENRGVRWKYMIHKQKSSSTLHYLNRTAFLFGPGQQMRMMFDSV 120
                        ++    + +++  +     +   +  +  TAFLFGPGQQMRMMFDSV
Sbjct: 61  -------------SLLVFAKPIKFAALF----TFGNVLAVGSTAFLFGPGQQMRMMFDSV 120

Query: 121 RIYATAIYLGCVVLALICALLIHNKILTVIAMTSEICALIWYSLSYIPFARRMVSELMIR 180
           RIYATAIYLGCVVLALICALLIHNKILTVIAMTSEICALIWYSLSYIPFARRMVSELMIR
Sbjct: 121 RIYATAIYLGCVVLALICALLIHNKILTVIAMTSEICALIWYSLSYIPFARRMVSELMIR 161

Query: 181 FCDTEL 186
           FCDTEL
Sbjct: 181 FCDTEL 161

[Close]

BLAST of Cp4.1LG09g00370 vs. NCBI nr
Match: XP_022945270.1 (vesicle transport protein SFT2B [Cucurbita moschata] >XP_022968626.1 vesicle transport protein SFT2B [Cucurbita maxima] >KAG6574237.1 Vesicle transport protein SFT2B, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013303.1 Vesicle transport protein SFT2B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 248 bits (633), Expect = 2.99e-81
Identity = 135/186 (72.58%), Postives = 145/186 (77.96%), Query Frame = 0


Query: 1   MWKLGLAVFGDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIVLSNGYGGL 60
           MWKLGL VFGDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIV        
Sbjct: 1   MWKLGLGVFGDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIV-------- 60

Query: 61  STDSDELWNETQSNIYGENRGVRWKYMIHKQKSSSTLHYLNRTAFLFGPGQQMRMMFDSV 120
                        ++    + +++  +     +   +  +  TAFLFGPGQQMRMMFDSV
Sbjct: 61  -------------SLLVFAKPIKFAALF----TFGNVLAVGSTAFLFGPGQQMRMMFDSV 120

Query: 121 RIYATAIYLGCVVLALICALLIHNKILTVIAMTSEICALIWYSLSYIPFARRMVSELMIR 180
           RIYATAIYLGCVVLALICALLIHNKILTVIAMTSEICALIWYSLSYIPFARRMVSELMIR
Sbjct: 121 RIYATAIYLGCVVLALICALLIHNKILTVIAMTSEICALIWYSLSYIPFARRMVSELMIR 161

Query: 181 FCDTEL 186
           FCDTEL
Sbjct: 181 FCDTEL 161

[Close]

BLAST of Cp4.1LG09g00370 vs. NCBI nr
Match: XP_022141323.1 (vesicle transport protein SFT2B isoform X1 [Momordica charantia])

HSP 1 Score: 237 bits (604), Expect = 1.92e-76
Identity = 135/202 (66.83%), Postives = 146/202 (72.28%), Query Frame = 0


Query: 1   MWKLGLAVFGDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMI-----VLSN 60
           MWKL   VFGDDEERGQSLLDEDSEDLCSL+PVQRLYGFG CLTGGVVCM+     VL +
Sbjct: 1   MWKLSRGVFGDDEERGQSLLDEDSEDLCSLSPVQRLYGFGACLTGGVVCMVLAICLVLMS 60

Query: 61  GYGGLSTDSDELWNETQSNIYGENRGVRWKYMIHKQ-----KSSSTLHYLNRT------A 120
                   +D+               VR  + IH+        SS L+YL+        A
Sbjct: 61  YTSHYPASTDDF--------------VRCFFFIHRHCLFLLNQSSLLYYLHLAMFWQSEA 120

Query: 121 FLFGPGQQMRMMFDSVRIYATAIYLGCVVLALICALLIHNKILTVIAMTSEICALIWYSL 180
           FLFGPGQQ+RMMFDSVRIYATAIYLGCVVLALICAL IHNKILTVIA+ SEICALIWYSL
Sbjct: 121 FLFGPGQQIRMMFDSVRIYATAIYLGCVVLALICALWIHNKILTVIAIISEICALIWYSL 180

Query: 181 SYIPFARRMVSELMIRFCDTEL 186
           SYIPFARRMVSELMIR CDTEL
Sbjct: 181 SYIPFARRMVSELMIRLCDTEL 188

[Close]

BLAST of Cp4.1LG09g00370 vs. NCBI nr
Match: XP_022141324.1 (vesicle transport protein SFT2B isoform X2 [Momordica charantia])

HSP 1 Score: 229 bits (585), Expect = 1.18e-73
Identity = 127/191 (66.49%), Postives = 144/191 (75.39%), Query Frame = 0


Query: 1   MWKLGLAVFGDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMI-----VLSN 60
           MWKL   VFGDDEERGQSLLDEDSEDLCSL+PVQRLYGFG CLTGGVVCM+     VL +
Sbjct: 1   MWKLSRGVFGDDEERGQSLLDEDSEDLCSLSPVQRLYGFGACLTGGVVCMVLAICLVLMS 60

Query: 61  GYGGLSTDSDELWNETQSNIYGENRGVRWKYMIHKQKSSSTLHYLNRTAFLFGPGQQMRM 120
                   +D+       ++    + +++  +     +   +  +  TAFLFGPGQQ+RM
Sbjct: 61  YTSHYPASTDDF------SLLVFAKPIKFAVLF----TFGNVLAVGSTAFLFGPGQQIRM 120

Query: 121 MFDSVRIYATAIYLGCVVLALICALLIHNKILTVIAMTSEICALIWYSLSYIPFARRMVS 180
           MFDSVRIYATAIYLGCVVLALICAL IHNKILTVIA+ SEICALIWYSLSYIPFARRMVS
Sbjct: 121 MFDSVRIYATAIYLGCVVLALICALWIHNKILTVIAIISEICALIWYSLSYIPFARRMVS 180

Query: 181 ELMIRFCDTEL 186
           ELMIR CDTEL
Sbjct: 181 ELMIRLCDTEL 181

[Close]

BLAST of Cp4.1LG09g00370 vs. NCBI nr
Match: XP_022141325.1 (vesicle transport protein SFT2B isoform X3 [Momordica charantia])

HSP 1 Score: 228 bits (582), Expect = 1.73e-73
Identity = 124/186 (66.67%), Postives = 139/186 (74.73%), Query Frame = 0


Query: 1   MWKLGLAVFGDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIVLSNGYGGL 60
           MWKL   VFGDDEERGQSLLDEDSEDLCSL+PVQRLYGFG CLTGGVVCM++        
Sbjct: 1   MWKLSRGVFGDDEERGQSLLDEDSEDLCSLSPVQRLYGFGACLTGGVVCMVL-------- 60

Query: 61  STDSDELWNETQSNIYGENRGVRWKYMIHKQKSSSTLHYLNRTAFLFGPGQQMRMMFDSV 120
                        ++    + +++  +     +   +  +  TAFLFGPGQQ+RMMFDSV
Sbjct: 61  -------------SLLVFAKPIKFAVLF----TFGNVLAVGSTAFLFGPGQQIRMMFDSV 120

Query: 121 RIYATAIYLGCVVLALICALLIHNKILTVIAMTSEICALIWYSLSYIPFARRMVSELMIR 180
           RIYATAIYLGCVVLALICAL IHNKILTVIA+ SEICALIWYSLSYIPFARRMVSELMIR
Sbjct: 121 RIYATAIYLGCVVLALICALWIHNKILTVIAIISEICALIWYSLSYIPFARRMVSELMIR 161

Query: 181 FCDTEL 186
            CDTEL
Sbjct: 181 LCDTEL 161

[Close]

BLAST of Cp4.1LG09g00370 vs. ExPASy TrEMBL
Match: A0A6J1HVF1 (Vesicle transport protein OS=Cucurbita maxima OX=3661 GN=LOC111467788 PE=3 SV=1)

HSP 1 Score: 248 bits (633), Expect = 1.45e-81
Identity = 135/186 (72.58%), Postives = 145/186 (77.96%), Query Frame = 0


Query: 1   MWKLGLAVFGDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIVLSNGYGGL 60
           MWKLGL VFGDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIV        
Sbjct: 1   MWKLGLGVFGDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIV-------- 60

Query: 61  STDSDELWNETQSNIYGENRGVRWKYMIHKQKSSSTLHYLNRTAFLFGPGQQMRMMFDSV 120
                        ++    + +++  +     +   +  +  TAFLFGPGQQMRMMFDSV
Sbjct: 61  -------------SLLVFAKPIKFAALF----TFGNVLAVGSTAFLFGPGQQMRMMFDSV 120

Query: 121 RIYATAIYLGCVVLALICALLIHNKILTVIAMTSEICALIWYSLSYIPFARRMVSELMIR 180
           RIYATAIYLGCVVLALICALLIHNKILTVIAMTSEICALIWYSLSYIPFARRMVSELMIR
Sbjct: 121 RIYATAIYLGCVVLALICALLIHNKILTVIAMTSEICALIWYSLSYIPFARRMVSELMIR 161

Query: 181 FCDTEL 186
           FCDTEL
Sbjct: 181 FCDTEL 161

[Close]

BLAST of Cp4.1LG09g00370 vs. ExPASy TrEMBL
Match: A0A6J1G0G6 (Vesicle transport protein OS=Cucurbita moschata OX=3662 GN=LOC111449568 PE=3 SV=1)

HSP 1 Score: 248 bits (633), Expect = 1.45e-81
Identity = 135/186 (72.58%), Postives = 145/186 (77.96%), Query Frame = 0


Query: 1   MWKLGLAVFGDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIVLSNGYGGL 60
           MWKLGL VFGDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIV        
Sbjct: 1   MWKLGLGVFGDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIV-------- 60

Query: 61  STDSDELWNETQSNIYGENRGVRWKYMIHKQKSSSTLHYLNRTAFLFGPGQQMRMMFDSV 120
                        ++    + +++  +     +   +  +  TAFLFGPGQQMRMMFDSV
Sbjct: 61  -------------SLLVFAKPIKFAALF----TFGNVLAVGSTAFLFGPGQQMRMMFDSV 120

Query: 121 RIYATAIYLGCVVLALICALLIHNKILTVIAMTSEICALIWYSLSYIPFARRMVSELMIR 180
           RIYATAIYLGCVVLALICALLIHNKILTVIAMTSEICALIWYSLSYIPFARRMVSELMIR
Sbjct: 121 RIYATAIYLGCVVLALICALLIHNKILTVIAMTSEICALIWYSLSYIPFARRMVSELMIR 161

Query: 181 FCDTEL 186
           FCDTEL
Sbjct: 181 FCDTEL 161

[Close]

BLAST of Cp4.1LG09g00370 vs. ExPASy TrEMBL
Match: A0A6J1CK82 (Vesicle transport protein OS=Momordica charantia OX=3673 GN=LOC111011745 PE=3 SV=1)

HSP 1 Score: 237 bits (604), Expect = 9.28e-77
Identity = 135/202 (66.83%), Postives = 146/202 (72.28%), Query Frame = 0


Query: 1   MWKLGLAVFGDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMI-----VLSN 60
           MWKL   VFGDDEERGQSLLDEDSEDLCSL+PVQRLYGFG CLTGGVVCM+     VL +
Sbjct: 1   MWKLSRGVFGDDEERGQSLLDEDSEDLCSLSPVQRLYGFGACLTGGVVCMVLAICLVLMS 60

Query: 61  GYGGLSTDSDELWNETQSNIYGENRGVRWKYMIHKQ-----KSSSTLHYLNRT------A 120
                   +D+               VR  + IH+        SS L+YL+        A
Sbjct: 61  YTSHYPASTDDF--------------VRCFFFIHRHCLFLLNQSSLLYYLHLAMFWQSEA 120

Query: 121 FLFGPGQQMRMMFDSVRIYATAIYLGCVVLALICALLIHNKILTVIAMTSEICALIWYSL 180
           FLFGPGQQ+RMMFDSVRIYATAIYLGCVVLALICAL IHNKILTVIA+ SEICALIWYSL
Sbjct: 121 FLFGPGQQIRMMFDSVRIYATAIYLGCVVLALICALWIHNKILTVIAIISEICALIWYSL 180

Query: 181 SYIPFARRMVSELMIRFCDTEL 186
           SYIPFARRMVSELMIR CDTEL
Sbjct: 181 SYIPFARRMVSELMIRLCDTEL 188

[Close]

BLAST of Cp4.1LG09g00370 vs. ExPASy TrEMBL
Match: A0A6J1CIC0 (Vesicle transport protein OS=Momordica charantia OX=3673 GN=LOC111011745 PE=3 SV=1)

HSP 1 Score: 229 bits (585), Expect = 5.71e-74
Identity = 127/191 (66.49%), Postives = 144/191 (75.39%), Query Frame = 0


Query: 1   MWKLGLAVFGDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMI-----VLSN 60
           MWKL   VFGDDEERGQSLLDEDSEDLCSL+PVQRLYGFG CLTGGVVCM+     VL +
Sbjct: 1   MWKLSRGVFGDDEERGQSLLDEDSEDLCSLSPVQRLYGFGACLTGGVVCMVLAICLVLMS 60

Query: 61  GYGGLSTDSDELWNETQSNIYGENRGVRWKYMIHKQKSSSTLHYLNRTAFLFGPGQQMRM 120
                   +D+       ++    + +++  +     +   +  +  TAFLFGPGQQ+RM
Sbjct: 61  YTSHYPASTDDF------SLLVFAKPIKFAVLF----TFGNVLAVGSTAFLFGPGQQIRM 120

Query: 121 MFDSVRIYATAIYLGCVVLALICALLIHNKILTVIAMTSEICALIWYSLSYIPFARRMVS 180
           MFDSVRIYATAIYLGCVVLALICAL IHNKILTVIA+ SEICALIWYSLSYIPFARRMVS
Sbjct: 121 MFDSVRIYATAIYLGCVVLALICALWIHNKILTVIAIISEICALIWYSLSYIPFARRMVS 180

Query: 181 ELMIRFCDTEL 186
           ELMIR CDTEL
Sbjct: 181 ELMIRLCDTEL 181

[Close]

BLAST of Cp4.1LG09g00370 vs. ExPASy TrEMBL
Match: A0A6J1CHR6 (Vesicle transport protein OS=Momordica charantia OX=3673 GN=LOC111011745 PE=3 SV=1)

HSP 1 Score: 228 bits (582), Expect = 8.40e-74
Identity = 124/186 (66.67%), Postives = 139/186 (74.73%), Query Frame = 0


Query: 1   MWKLGLAVFGDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIVLSNGYGGL 60
           MWKL   VFGDDEERGQSLLDEDSEDLCSL+PVQRLYGFG CLTGGVVCM++        
Sbjct: 1   MWKLSRGVFGDDEERGQSLLDEDSEDLCSLSPVQRLYGFGACLTGGVVCMVL-------- 60

Query: 61  STDSDELWNETQSNIYGENRGVRWKYMIHKQKSSSTLHYLNRTAFLFGPGQQMRMMFDSV 120
                        ++    + +++  +     +   +  +  TAFLFGPGQQ+RMMFDSV
Sbjct: 61  -------------SLLVFAKPIKFAVLF----TFGNVLAVGSTAFLFGPGQQIRMMFDSV 120

Query: 121 RIYATAIYLGCVVLALICALLIHNKILTVIAMTSEICALIWYSLSYIPFARRMVSELMIR 180
           RIYATAIYLGCVVLALICAL IHNKILTVIA+ SEICALIWYSLSYIPFARRMVSELMIR
Sbjct: 121 RIYATAIYLGCVVLALICALWIHNKILTVIAIISEICALIWYSLSYIPFARRMVSELMIR 161

Query: 181 FCDTEL 186
            CDTEL
Sbjct: 181 LCDTEL 161

[Close]

BLAST of Cp4.1LG09g00370 vs. TAIR 10
Match: AT5G24170.1 (Got1/Sft2-like vescicle transport protein family )

HSP 1 Score: 149.8 bits (377), Expect = 2.1e-36
Identity = 91/177 (51.41%), Postives = 110/177 (62.15%), Query Frame = 0


Query: 10  GDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIVLSNGYGGLSTDSDELWN 69
           GD +    S L++ SE LC+L+  QR+YGF   L  G++ M  LS    G+      L+ 
Sbjct: 12  GDGDGTTDSFLEDGSEGLCALSTTQRMYGFAASLATGLLLMF-LSMIVFGIPIKFALLF- 71

Query: 70  ETQSNIYGENRGVRWKYMIHKQKSSSTLHYLNRTAFLFGPGQQMRMMFDSVRIYATAIYL 129
            T  N+                        +  TAFL GP QQM MMFD VR  AT+IY+
Sbjct: 72  -TFGNVLA----------------------IGSTAFLMGPEQQMSMMFDPVRFLATSIYI 131

Query: 130 GCVVLALICALLIHNKILTVIAMTSEICALIWYSLSYIPFARRMVSELMIRFCDTEL 187
           GCVV+ALICALLIH+KILTV+A+  EICALIWYSLSYIPFARRMVSE+MIR CDTEL
Sbjct: 132 GCVVVALICALLIHSKILTVLAILCEICALIWYSLSYIPFARRMVSEIMIRLCDTEL 163

[Close]

BLAST of Cp4.1LG09g00370 vs. TAIR 10
Match: AT5G23550.1 (Got1/Sft2-like vescicle transport protein family )

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-24
Identity = 70/174 (40.23%), Postives = 94/174 (54.02%), Query Frame = 0


Query: 12  DEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIVLSNGYGGLSTDSDELWNET 71
           DEE   S + ED    C+LT  QR YGF  CL+ G+ C ++    +          +N  
Sbjct: 27  DEESSLSFM-EDLNRNCALTTKQRFYGFAICLSAGLTCTLLSMLVF----------FNPV 86

Query: 72  QSNIYGENRGVRWKYMIHKQKSSSTLHYLNRTAFLFGPGQQMRMMFDSVRIYATAIYLGC 131
           +  I                 +   L  L  TAFL GP +Q+ MM D  RIYATA+YL  
Sbjct: 87  KFGI---------------TFTLGNLMALGSTAFLIGPQRQVTMMLDPARIYATALYLAS 146

Query: 132 VVLALICALLIHNKILTVIAMTSEICALIWYSLSYIPFARRMVSELMIRFCDTE 186
           +++AL CAL + NK+LT++A+  E   LIWYSLSYIPFAR MVS++ +   DTE
Sbjct: 147 IIIALFCALYVRNKLLTLLAIILEFTGLIWYSLSYIPFARTMVSKIFMTCFDTE 174

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g00370 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8WV19	6.9e-08	39.08	Vesicle transport protein SFT2A OS=Homo sapiens OX=9606 GN=SFT2D1 PE=1 SV=1	[more]
O95562	6.9e-08	44.16	Vesicle transport protein SFT2B OS=Homo sapiens OX=9606 GN=SFT2D2 PE=1 SV=1	[more]
Q8VD57	2.6e-07	42.86	Vesicle transport protein SFT2B OS=Mus musculus OX=10090 GN=Sft2d2 PE=1 SV=1	[more]
Q5SSN7	5.9e-07	42.67	Vesicle transport protein SFT2A OS=Mus musculus OX=10090 GN=Sft2d1 PE=1 SV=1	[more]
Q5U3Y5	5.9e-07	42.67	Vesicle transport protein SFT2A OS=Rattus norvegicus OX=10116 GN=Sft2d1 PE=2 SV=...	[more]

BLAST of Cp4.1LG09g00370 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023541346.1	7.36e-82	73.12	vesicle transport protein SFT2B [Cucurbita pepo subsp. pepo]	[more]
XP_022945270.1	2.99e-81	72.58	vesicle transport protein SFT2B [Cucurbita moschata] >XP_022968626.1 vesicle tra...	[more]
XP_022141323.1	1.92e-76	66.83	vesicle transport protein SFT2B isoform X1 [Momordica charantia]	[more]
XP_022141324.1	1.18e-73	66.49	vesicle transport protein SFT2B isoform X2 [Momordica charantia]	[more]
XP_022141325.1	1.73e-73	66.67	vesicle transport protein SFT2B isoform X3 [Momordica charantia]	[more]

BLAST of Cp4.1LG09g00370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HVF1	1.45e-81	72.58	Vesicle transport protein OS=Cucurbita maxima OX=3661 GN=LOC111467788 PE=3 SV=1	[more]
A0A6J1G0G6	1.45e-81	72.58	Vesicle transport protein OS=Cucurbita moschata OX=3662 GN=LOC111449568 PE=3 SV=...	[more]
A0A6J1CK82	9.28e-77	66.83	Vesicle transport protein OS=Momordica charantia OX=3673 GN=LOC111011745 PE=3 SV...	[more]
A0A6J1CIC0	5.71e-74	66.49	Vesicle transport protein OS=Momordica charantia OX=3673 GN=LOC111011745 PE=3 SV...	[more]
A0A6J1CHR6	8.40e-74	66.67	Vesicle transport protein OS=Momordica charantia OX=3673 GN=LOC111011745 PE=3 SV...	[more]

BLAST of Cp4.1LG09g00370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G24170.1	2.1e-36	51.41	Got1/Sft2-like vescicle transport protein family	[more]
AT5G23550.1	1.1e-24	40.23	Got1/Sft2-like vescicle transport protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007305	Vesicle transport protein, Got1/SFT2-like	PFAM	PF04178	Got1	coord: 99..177 e-value: 2.9E-23 score: 82.4
IPR011691	Vesicle transport protein SFT2	PANTHER	PTHR23137	UNCHARACTERIZED	coord: 100..186
IPR011691	Vesicle transport protein SFT2	PANTHER	PTHR23137	UNCHARACTERIZED	coord: 16..52
None	No IPR available	PANTHER	PTHR23137:SF29	VESICLE TRANSPORT PROTEIN	coord: 16..52
None	No IPR available	PANTHER	PTHR23137:SF29	VESICLE TRANSPORT PROTEIN	coord: 100..186

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG09g00370.1	Cp4.1LG09g00370.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0016021	integral component of membrane