Cp4.1LG08g13040 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG08g13040
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	SKP1-like protein
Location	Cp4.1LG08: 9414473 .. 9415715 (-)
RNA-Seq Expression	Cp4.1LG08g13040
Synteny	Cp4.1LG08g13040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAAACTTCTCTTCTTCATCCTCTTCACAAAAATCACAATCAATCAATCAATCAATCTTCGTTCTCTCAGCAAAACCATGTCCTCTTCCAAGAAGATCGTTCTCAAGAGCTCCGATGGCGACACTTTTGAAATCGACGAGGCGGCCGCCCTCCAGTCACAGGCCATCCGCCACATGATCGAGGACGATTGTGCCGATAACGTCATCCCTCTTCCAAATGTCACCAGCAAGATCCTCGCCAAGGTTATCGAGTACTGCCGCAAGCATGTCGATGCTTCCTCCGCCGATCCCCCCCTCTCTGAACAAGATCTCAATGCCTGGGACCGGGACTTCGCTGATGTTGATCAGGCCACACTTTTCGATCTCCTTCTGGTAACTTTTCTTTCCTCCCGCTTTTAGATCCATCGACTCGATTGTCTACGGTTTTGATTCTTCGTCGATTTTCTAGGGTTTACCTGTTTGGTATGATTTTGTTTTCAAGAATCAACTCTGAGTCTTGAATTGAGCAAACCACTTGCGTTGATCTTCTTTGTCGCTGGTTACCGTTCTTTATCTGACGTATCTGTATTGACGCCTGTGCAGTTGTGCTAATAGGATAGTCATGGCCTTTATCGTTACCTTGTCGTCTTGATTTCATTTTCAGCGGTCTTATTTTTTGGTGTTATCTAGGCGTCATTATCAAATGATTGTTGCTTAGGTTAATGCGTAAAAGTCATAGATAGACATGATTTCTTTCATGGTTCTGTATGTTAACAGCTTTAATTGATCGAGTTCTACATTCACCCATCGTTTATGTTCTTGATGCAAAGAATTTCAGCTGCCAGGGGATTTGACCATTATCGTCATTCATTTTTTTCTGGATTCTGCGCCCTATGAAATTCACTTTTATCCTACCCTGCAGGCTGCAAATTATCTGAGCATCAATAGCTTGTTAGACCTGACATGCCGAACAGTAGCTAACATGTTCAGGGGAAAAACTCCAGAGGAGGTCAGAAAGACCTTCAACATCAAGAACGACTTCACACCGGAGGAAGAGGCGGAAATTCGTAGGGAGAATCAGTGGGCTTTTGAATGATTTGAAGTCCCATAAGAGTGCCCAAGGATCTTGATCAATATGATGGTTGTTCTGTACATGGTTCTGTATAAACATTTCTTTTTGGTTCTTTTGGGGTGTATTCAATCACTCCGTTGGTCTTCACATTGTTTGAACCTCATCATAATTGTACAAACTTTAATTTTTTTTT

mRNA sequence

TCAAACTTCTCTTCTTCATCCTCTTCACAAAAATCACAATCAATCAATCAATCAATCTTCGTTCTCTCAGCAAAACCATGTCCTCTTCCAAGAAGATCGTTCTCAAGAGCTCCGATGGCGACACTTTTGAAATCGACGAGGCGGCCGCCCTCCAGTCACAGGCCATCCGCCACATGATCGAGGACGATTGTGCCGATAACGTCATCCCTCTTCCAAATGTCACCAGCAAGATCCTCGCCAAGGTTATCGAGTACTGCCGCAAGCATGTCGATGCTTCCTCCGCCGATCCCCCCCTCTCTGAACAAGATCTCAATGCCTGGGACCGGGACTTCGCTGATGTTGATCAGGCCACACTTTTCGATCTCCTTCTGGCTGCAAATTATCTGAGCATCAATAGCTTGTTAGACCTGACATGCCGAACAGTAGCTAACATGTTCAGGGGAAAAACTCCAGAGGAGGTCAGAAAGACCTTCAACATCAAGAACGACTTCACACCGGAGGAAGAGGCGGAAATTCGTAGGGAGAATCAGTGGGCTTTTGAATGATTTGAAGTCCCATAAGAGTGCCCAAGGATCTTGATCAATATGATGGTTGTTCTGTACATGGTTCTGTATAAACATTTCTTTTTGGTTCTTTTGGGGTGTATTCAATCACTCCGTTGGTCTTCACATTGTTTGAACCTCATCATAATTGTACAAACTTTAATTTTTTTTT

Coding sequence (CDS)

ATGTCCTCTTCCAAGAAGATCGTTCTCAAGAGCTCCGATGGCGACACTTTTGAAATCGACGAGGCGGCCGCCCTCCAGTCACAGGCCATCCGCCACATGATCGAGGACGATTGTGCCGATAACGTCATCCCTCTTCCAAATGTCACCAGCAAGATCCTCGCCAAGGTTATCGAGTACTGCCGCAAGCATGTCGATGCTTCCTCCGCCGATCCCCCCCTCTCTGAACAAGATCTCAATGCCTGGGACCGGGACTTCGCTGATGTTGATCAGGCCACACTTTTCGATCTCCTTCTGGCTGCAAATTATCTGAGCATCAATAGCTTGTTAGACCTGACATGCCGAACAGTAGCTAACATGTTCAGGGGAAAAACTCCAGAGGAGGTCAGAAAGACCTTCAACATCAAGAACGACTTCACACCGGAGGAAGAGGCGGAAATTCGTAGGGAGAATCAGTGGGCTTTTGAATGA

Protein sequence

MSSSKKIVLKSSDGDTFEIDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYCRKHVDASSADPPLSEQDLNAWDRDFADVDQATLFDLLLAANYLSINSLLDLTCRTVANMFRGKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE

Homology

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BLAST of Cp4.1LG08g13040 vs. ExPASy Swiss-Prot
Match: Q39255 (SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 3.2e-59
Identity = 110/159 (69.18%), Postives = 135/159 (84.91%), Query Frame = 0


Query: 3   SSKKIVLKSSDGDTFEIDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYCRK 62
           S+KKIVLKSSDG++FE++EA AL+SQ I HM+EDDC DN +PLPNVTSKILAKVIEYC++
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 63  HVDASSA------DPPLSEQDLNAWDRDFADVDQATLFDLLLAANYLSINSLLDLTCRTV 122
           HV+A+++          S+ DL AWD DF  +DQATLF+L+LAANYL+I +LLDLTC+TV
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121

Query: 123 ANMFRGKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE 156
           A+M +GKTPEE+R TFNIKNDFTPEEE E+RRENQWAFE
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

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BLAST of Cp4.1LG08g13040 vs. ExPASy Swiss-Prot
Match: Q6PL11 (SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.2e-58
Identity = 115/166 (69.28%), Postives = 130/166 (78.31%), Query Frame = 0


Query: 5   KKIVLKSSDGDTFEIDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYCRKHV 64
           K I LKSSDG+ FE++EA A++SQ IRHMIEDDCADN IPLPNV SKIL+KVIEYC KHV
Sbjct: 8   KMITLKSSDGEEFEVEEAVAMESQTIRHMIEDDCADNGIPLPNVNSKILSKVIEYCNKHV 67

Query: 65  ---------------DASSADPPLSEQDLNAWDRDFADVDQATLFDLLLAANYLSINSLL 124
                           A++A PP S +DL  WD DF  VDQATLFDL+LAANYL+I  LL
Sbjct: 68  HAAAAAASKAADDAASAAAAVPPPSGEDLKNWDADFVKVDQATLFDLILAANYLNIKGLL 127

Query: 125 DLTCRTVANMFRGKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE 156
           DLTC+TVA+M +GKTPEE+RKTFNIKNDFTPEEE EIRRENQWAFE
Sbjct: 128 DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEIRRENQWAFE 173

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BLAST of Cp4.1LG08g13040 vs. ExPASy Swiss-Prot
Match: Q9FHW7 (SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 4.7e-58
Identity = 114/171 (66.67%), Postives = 135/171 (78.95%), Query Frame = 0


Query: 1   MSSSKKIVLKSSDGDTFEIDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYC 60
           MS+ +KI LKSSDG+ FEIDEA AL+SQ I+HMIEDDC DN IPLPNVTSKIL+KVIEYC
Sbjct: 1   MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC 60

Query: 61  RKHVDA-----SSADPPL-----------SEQDLNAWDRDFADVDQATLFDLLLAANYLS 120
           ++HV+A     ++AD              S++DL  WD +F  VDQ TLFDL+LAANYL+
Sbjct: 61  KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLN 120

Query: 121 INSLLDLTCRTVANMFRGKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE 156
           I  LLDLTC+TVA+M +GKTPEE+RKTFNIKNDFTPEEE E+RRENQWAFE
Sbjct: 121 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]

BLAST of Cp4.1LG08g13040 vs. ExPASy Swiss-Prot
Match: O49484 (SKP1-like protein 11 OS=Arabidopsis thaliana OX=3702 GN=ASK11 PE=1 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.6e-53
Identity = 103/154 (66.88%), Postives = 128/154 (83.12%), Query Frame = 0


Query: 3   SSKKIVLKSSDGDTFEIDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYCRK 62
           SSK IVL SSDG +FE++EA A+QSQ I HM+EDDC  + IPL NV SKIL KVIEYC+K
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 63  -HVDASSADPPLSEQDLNAWDRDFADVDQATLFDLLLAANYLSINSLLDLTCRTVANMFR 122
            HVD ++   P+SE+DLN WD  F D++Q+T+F+L+LAANYL+I SLLDLTC+TVA+M +
Sbjct: 62  HHVDEAN---PISEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIK 121

Query: 123 GKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE 156
           GKTPEE+R TFNI+NDFTPEEE  +R+ENQWAFE
Sbjct: 122 GKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]

BLAST of Cp4.1LG08g13040 vs. ExPASy Swiss-Prot
Match: O65674 (SKP1-like protein 12 OS=Arabidopsis thaliana OX=3702 GN=ASK12 PE=1 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 3.5e-53
Identity = 102/154 (66.23%), Postives = 127/154 (82.47%), Query Frame = 0


Query: 3   SSKKIVLKSSDGDTFEIDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYCRK 62
           SSK IVL SSDG +FE++EA A+QSQ I HM+EDDC  + IPL NV SKIL KVIEYC+K
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 63  -HVDASSADPPLSEQDLNAWDRDFADVDQATLFDLLLAANYLSINSLLDLTCRTVANMFR 122
            HVD ++   P+SE+DLN WD  F D++Q+T+F+L+LAANYL+I SL DLTC+TVA+M +
Sbjct: 62  YHVDEAN---PISEEDLNKWDEKFMDLEQSTIFELILAANYLNIKSLFDLTCQTVADMIK 121

Query: 123 GKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE 156
           GKTPEE+R TFNI+NDFTPEEE  +R+ENQWAFE
Sbjct: 122 GKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]

BLAST of Cp4.1LG08g13040 vs. NCBI nr
Match: XP_023539883.1 (SKP1-like protein 1A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 305 bits (782), Expect = 1.38e-104
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MSSSKKIVLKSSDGDTFEIDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYC 60
           MSSSKKIVLKSSDGDTFEIDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYC
Sbjct: 1   MSSSKKIVLKSSDGDTFEIDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYC 60

Query: 61  RKHVDASSADPPLSEQDLNAWDRDFADVDQATLFDLLLAANYLSINSLLDLTCRTVANMF 120
           RKHVDASSADPPLSEQDLNAWDRDFADVDQATLFDLLLAANYLSINSLLDLTCRTVANMF
Sbjct: 61  RKHVDASSADPPLSEQDLNAWDRDFADVDQATLFDLLLAANYLSINSLLDLTCRTVANMF 120

Query: 121 RGKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE 155
           RGKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE
Sbjct: 121 RGKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE 155

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BLAST of Cp4.1LG08g13040 vs. NCBI nr
Match: XP_022943891.1 (SKP1-like protein 1A [Cucurbita moschata] >KAG6596256.1 SKP1-like protein 1A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027802.1 SKP1-like protein 1A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 304 bits (779), Expect = 3.95e-104
Identity = 154/155 (99.35%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MSSSKKIVLKSSDGDTFEIDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYC 60
           MSSSKKIVLKSSDGDTFEIDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYC
Sbjct: 1   MSSSKKIVLKSSDGDTFEIDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYC 60

Query: 61  RKHVDASSADPPLSEQDLNAWDRDFADVDQATLFDLLLAANYLSINSLLDLTCRTVANMF 120
           RKHVDASS+DPPLSEQDLNAWDRDFADVDQATLFDLLLAANYLSINSLLDLTCRTVANMF
Sbjct: 61  RKHVDASSSDPPLSEQDLNAWDRDFADVDQATLFDLLLAANYLSINSLLDLTCRTVANMF 120

Query: 121 RGKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE 155
           RGKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE
Sbjct: 121 RGKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE 155

[Close]

BLAST of Cp4.1LG08g13040 vs. NCBI nr
Match: XP_022971540.1 (SKP1-like protein 1A [Cucurbita maxima])

HSP 1 Score: 300 bits (767), Expect = 2.67e-102
Identity = 150/155 (96.77%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MSSSKKIVLKSSDGDTFEIDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYC 60
           MSS+K+IVLKSSDGDTFE+DEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYC
Sbjct: 1   MSSAKRIVLKSSDGDTFEVDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYC 60

Query: 61  RKHVDASSADPPLSEQDLNAWDRDFADVDQATLFDLLLAANYLSINSLLDLTCRTVANMF 120
           RKHVDASS+DPPLSEQDL+AWDRDFADVDQATLFDLLLAANYLSINSLLDLTCRTVANMF
Sbjct: 61  RKHVDASSSDPPLSEQDLSAWDRDFADVDQATLFDLLLAANYLSINSLLDLTCRTVANMF 120

Query: 121 RGKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE 155
           RGKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE
Sbjct: 121 RGKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE 155

[Close]

BLAST of Cp4.1LG08g13040 vs. NCBI nr
Match: XP_038903121.1 (SKP1-like protein 1A [Benincasa hispida])

HSP 1 Score: 268 bits (685), Expect = 8.51e-90
Identity = 132/155 (85.16%), Postives = 143/155 (92.26%), Query Frame = 0


Query: 1   MSSSKKIVLKSSDGDTFEIDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYC 60
           MSSSKKI LKSSDGD+FE+DEA ALQSQ IRHMIEDDCADN IPLPNVTS ILAKVIEYC
Sbjct: 1   MSSSKKITLKSSDGDSFEVDEAVALQSQTIRHMIEDDCADNGIPLPNVTSNILAKVIEYC 60

Query: 61  RKHVDASSADPPLSEQDLNAWDRDFADVDQATLFDLLLAANYLSINSLLDLTCRTVANMF 120
           RKHVDASSADP LS+ DL AWDRDF +VDQATLFDL+LAANYL+I SLLDLTC+TVA+M 
Sbjct: 61  RKHVDASSADPRLSDDDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 RGKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE 155
           +GKTPEE+RKTFNIKNDFTPEEE E+RRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of Cp4.1LG08g13040 vs. NCBI nr
Match: XP_022965297.1 (SKP1-like protein 1A [Cucurbita maxima] >KAG6577790.1 SKP1-like protein 1A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015829.1 SKP1-like protein 1A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 265 bits (677), Expect = 1.41e-88
Identity = 130/155 (83.87%), Postives = 143/155 (92.26%), Query Frame = 0


Query: 1   MSSSKKIVLKSSDGDTFEIDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYC 60
           MSSSKKI LKSSDG++FEIDE  AL+SQ IRHMIEDDCADN IPLPNVTSKILAKVIEYC
Sbjct: 1   MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYC 60

Query: 61  RKHVDASSADPPLSEQDLNAWDRDFADVDQATLFDLLLAANYLSINSLLDLTCRTVANMF 120
            KHVDASSADP +SE+DL AWDRDF +VDQATLFDL+LAANYL+I SLLDLTC+TVA+M 
Sbjct: 61  HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 RGKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE 155
           +GKTPEE+RKTFNIKNDFTPEEE E+RRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of Cp4.1LG08g13040 vs. ExPASy TrEMBL
Match: A0A6J1FSY2 (SKP1-like protein OS=Cucurbita moschata OX=3662 GN=LOC111448479 PE=3 SV=1)

HSP 1 Score: 304 bits (779), Expect = 1.91e-104
Identity = 154/155 (99.35%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MSSSKKIVLKSSDGDTFEIDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYC 60
           MSSSKKIVLKSSDGDTFEIDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYC
Sbjct: 1   MSSSKKIVLKSSDGDTFEIDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYC 60

Query: 61  RKHVDASSADPPLSEQDLNAWDRDFADVDQATLFDLLLAANYLSINSLLDLTCRTVANMF 120
           RKHVDASS+DPPLSEQDLNAWDRDFADVDQATLFDLLLAANYLSINSLLDLTCRTVANMF
Sbjct: 61  RKHVDASSSDPPLSEQDLNAWDRDFADVDQATLFDLLLAANYLSINSLLDLTCRTVANMF 120

Query: 121 RGKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE 155
           RGKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE
Sbjct: 121 RGKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE 155

[Close]

BLAST of Cp4.1LG08g13040 vs. ExPASy TrEMBL
Match: A0A6J1I611 (SKP1-like protein OS=Cucurbita maxima OX=3661 GN=LOC111470228 PE=3 SV=1)

HSP 1 Score: 300 bits (767), Expect = 1.29e-102
Identity = 150/155 (96.77%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MSSSKKIVLKSSDGDTFEIDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYC 60
           MSS+K+IVLKSSDGDTFE+DEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYC
Sbjct: 1   MSSAKRIVLKSSDGDTFEVDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYC 60

Query: 61  RKHVDASSADPPLSEQDLNAWDRDFADVDQATLFDLLLAANYLSINSLLDLTCRTVANMF 120
           RKHVDASS+DPPLSEQDL+AWDRDFADVDQATLFDLLLAANYLSINSLLDLTCRTVANMF
Sbjct: 61  RKHVDASSSDPPLSEQDLSAWDRDFADVDQATLFDLLLAANYLSINSLLDLTCRTVANMF 120

Query: 121 RGKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE 155
           RGKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE
Sbjct: 121 RGKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE 155

[Close]

BLAST of Cp4.1LG08g13040 vs. ExPASy TrEMBL
Match: A0A6J1HJY3 (SKP1-like protein OS=Cucurbita maxima OX=3661 GN=LOC111465205 PE=3 SV=1)

HSP 1 Score: 265 bits (677), Expect = 6.83e-89
Identity = 130/155 (83.87%), Postives = 143/155 (92.26%), Query Frame = 0


Query: 1   MSSSKKIVLKSSDGDTFEIDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYC 60
           MSSSKKI LKSSDG++FEIDE  AL+SQ IRHMIEDDCADN IPLPNVTSKILAKVIEYC
Sbjct: 1   MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYC 60

Query: 61  RKHVDASSADPPLSEQDLNAWDRDFADVDQATLFDLLLAANYLSINSLLDLTCRTVANMF 120
            KHVDASSADP +SE+DL AWDRDF +VDQATLFDL+LAANYL+I SLLDLTC+TVA+M 
Sbjct: 61  HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 RGKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE 155
           +GKTPEE+RKTFNIKNDFTPEEE E+RRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of Cp4.1LG08g13040 vs. ExPASy TrEMBL
Match: A0A6J1EBI5 (SKP1-like protein OS=Cucurbita moschata OX=3662 GN=LOC111431062 PE=3 SV=1)

HSP 1 Score: 263 bits (673), Expect = 2.78e-88
Identity = 129/155 (83.23%), Postives = 142/155 (91.61%), Query Frame = 0


Query: 1   MSSSKKIVLKSSDGDTFEIDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYC 60
           MSSSKKI LKSSDG++FEIDE  AL+SQ IRHMIEDDCADN IPLPNVTSKIL KVIEYC
Sbjct: 1   MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILVKVIEYC 60

Query: 61  RKHVDASSADPPLSEQDLNAWDRDFADVDQATLFDLLLAANYLSINSLLDLTCRTVANMF 120
            KHVDASSADP +SE+DL AWDRDF +VDQATLFDL+LAANYL+I SLLDLTC+TVA+M 
Sbjct: 61  HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 RGKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE 155
           +GKTPEE+RKTFNIKNDFTPEEE E+RRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of Cp4.1LG08g13040 vs. ExPASy TrEMBL
Match: A0A6J1CWB0 (SKP1-like protein OS=Momordica charantia OX=3673 GN=LOC111014883 PE=3 SV=1)

HSP 1 Score: 261 bits (667), Expect = 2.29e-87
Identity = 126/155 (81.29%), Postives = 144/155 (92.90%), Query Frame = 0


Query: 1   MSSSKKIVLKSSDGDTFEIDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYC 60
           MSSSKKI+LKSSDG+ FE+DEA AL+SQ IRHMIEDDCADN IPLPNV+SKILAKVIEYC
Sbjct: 1   MSSSKKIILKSSDGEPFEVDEAVALESQTIRHMIEDDCADNGIPLPNVSSKILAKVIEYC 60

Query: 61  RKHVDASSADPPLSEQDLNAWDRDFADVDQATLFDLLLAANYLSINSLLDLTCRTVANMF 120
           RKHVDAS+++P  SE+DL AWDRDF +VDQATLFDL+LAANYL+I +LLDLTC+TVA+M 
Sbjct: 61  RKHVDASNSEPRASEEDLKAWDRDFVNVDQATLFDLILAANYLNIKNLLDLTCQTVADMI 120

Query: 121 RGKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE 155
           +GKTPEE+RKTFNIKNDFTPEEE E+RRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of Cp4.1LG08g13040 vs. TAIR 10
Match: AT1G75950.1 (S phase kinase-associated protein 1 )

HSP 1 Score: 229.2 bits (583), Expect = 2.3e-60
Identity = 110/159 (69.18%), Postives = 135/159 (84.91%), Query Frame = 0


Query: 3   SSKKIVLKSSDGDTFEIDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYCRK 62
           S+KKIVLKSSDG++FE++EA AL+SQ I HM+EDDC DN +PLPNVTSKILAKVIEYC++
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 63  HVDASSA------DPPLSEQDLNAWDRDFADVDQATLFDLLLAANYLSINSLLDLTCRTV 122
           HV+A+++          S+ DL AWD DF  +DQATLF+L+LAANYL+I +LLDLTC+TV
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121

Query: 123 ANMFRGKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE 156
           A+M +GKTPEE+R TFNIKNDFTPEEE E+RRENQWAFE
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]

BLAST of Cp4.1LG08g13040 vs. TAIR 10
Match: AT5G42190.1 (E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein )

HSP 1 Score: 225.3 bits (573), Expect = 3.3e-59
Identity = 114/171 (66.67%), Postives = 135/171 (78.95%), Query Frame = 0


Query: 1   MSSSKKIVLKSSDGDTFEIDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYC 60
           MS+ +KI LKSSDG+ FEIDEA AL+SQ I+HMIEDDC DN IPLPNVTSKIL+KVIEYC
Sbjct: 1   MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC 60

Query: 61  RKHVDA-----SSADPPL-----------SEQDLNAWDRDFADVDQATLFDLLLAANYLS 120
           ++HV+A     ++AD              S++DL  WD +F  VDQ TLFDL+LAANYL+
Sbjct: 61  KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLN 120

Query: 121 INSLLDLTCRTVANMFRGKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE 156
           I  LLDLTC+TVA+M +GKTPEE+RKTFNIKNDFTPEEE E+RRENQWAFE
Sbjct: 121 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]

BLAST of Cp4.1LG08g13040 vs. TAIR 10
Match: AT4G34210.1 (SKP1-like 11 )

HSP 1 Score: 210.3 bits (534), Expect = 1.1e-54
Identity = 103/154 (66.88%), Postives = 128/154 (83.12%), Query Frame = 0


Query: 3   SSKKIVLKSSDGDTFEIDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYCRK 62
           SSK IVL SSDG +FE++EA A+QSQ I HM+EDDC  + IPL NV SKIL KVIEYC+K
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 63  -HVDASSADPPLSEQDLNAWDRDFADVDQATLFDLLLAANYLSINSLLDLTCRTVANMFR 122
            HVD ++   P+SE+DLN WD  F D++Q+T+F+L+LAANYL+I SLLDLTC+TVA+M +
Sbjct: 62  HHVDEAN---PISEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIK 121

Query: 123 GKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE 156
           GKTPEE+R TFNI+NDFTPEEE  +R+ENQWAFE
Sbjct: 122 GKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]

BLAST of Cp4.1LG08g13040 vs. TAIR 10
Match: AT4G34470.1 (SKP1-like 12 )

HSP 1 Score: 209.1 bits (531), Expect = 2.5e-54
Identity = 102/154 (66.23%), Postives = 127/154 (82.47%), Query Frame = 0


Query: 3   SSKKIVLKSSDGDTFEIDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYCRK 62
           SSK IVL SSDG +FE++EA A+QSQ I HM+EDDC  + IPL NV SKIL KVIEYC+K
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 63  -HVDASSADPPLSEQDLNAWDRDFADVDQATLFDLLLAANYLSINSLLDLTCRTVANMFR 122
            HVD ++   P+SE+DLN WD  F D++Q+T+F+L+LAANYL+I SL DLTC+TVA+M +
Sbjct: 62  YHVDEAN---PISEEDLNKWDEKFMDLEQSTIFELILAANYLNIKSLFDLTCQTVADMIK 121

Query: 123 GKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE 156
           GKTPEE+R TFNI+NDFTPEEE  +R+ENQWAFE
Sbjct: 122 GKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]

BLAST of Cp4.1LG08g13040 vs. TAIR 10
Match: AT1G20140.1 (SKP1-like 4 )

HSP 1 Score: 205.3 bits (521), Expect = 3.6e-53
Identity = 101/160 (63.12%), Postives = 124/160 (77.50%), Query Frame = 0


Query: 3   SSKKIVLKSSDGDTFEIDEAAALQSQAIRHMIEDDCADNVIPLPNVTSKILAKVIEYCRK 62
           + K I+LKSSDG++FEI+EA A++SQ I+HMIEDDCADN IPLPNVT  ILAKVIEYC+K
Sbjct: 4   TKKMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKK 63

Query: 63  HVDASSAD-------PPLSEQDLNAWDRDFADVDQATLFDLLLAANYLSINSLLDLTCRT 122
           HV+A++               +L  WD +F  VDQ TLFDL+LAANYL+I  LLDLTC+ 
Sbjct: 64  HVEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKA 123

Query: 123 VANMFRGKTPEEVRKTFNIKNDFTPEEEAEIRRENQWAFE 156
           VA+  RGKTPE++R  FNIKND+TPEEEAE+R EN+WAFE
Sbjct: 124 VADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g13040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39255	3.2e-59	69.18	SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1	[more]
Q6PL11	1.2e-58	69.28	SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1	[more]
Q9FHW7	4.7e-58	66.67	SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1	[more]
O49484	1.6e-53	66.88	SKP1-like protein 11 OS=Arabidopsis thaliana OX=3702 GN=ASK11 PE=1 SV=1	[more]
O65674	3.5e-53	66.23	SKP1-like protein 12 OS=Arabidopsis thaliana OX=3702 GN=ASK12 PE=1 SV=1	[more]

BLAST of Cp4.1LG08g13040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023539883.1	1.38e-104	100.00	SKP1-like protein 1A [Cucurbita pepo subsp. pepo]	[more]
XP_022943891.1	3.95e-104	99.35	SKP1-like protein 1A [Cucurbita moschata] >KAG6596256.1 SKP1-like protein 1A, pa...	[more]
XP_022971540.1	2.67e-102	96.77	SKP1-like protein 1A [Cucurbita maxima]	[more]
XP_038903121.1	8.51e-90	85.16	SKP1-like protein 1A [Benincasa hispida]	[more]
XP_022965297.1	1.41e-88	83.87	SKP1-like protein 1A [Cucurbita maxima] >KAG6577790.1 SKP1-like protein 1A, part...	[more]

BLAST of Cp4.1LG08g13040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FSY2	1.91e-104	99.35	SKP1-like protein OS=Cucurbita moschata OX=3662 GN=LOC111448479 PE=3 SV=1	[more]
A0A6J1I611	1.29e-102	96.77	SKP1-like protein OS=Cucurbita maxima OX=3661 GN=LOC111470228 PE=3 SV=1	[more]
A0A6J1HJY3	6.83e-89	83.87	SKP1-like protein OS=Cucurbita maxima OX=3661 GN=LOC111465205 PE=3 SV=1	[more]
A0A6J1EBI5	2.78e-88	83.23	SKP1-like protein OS=Cucurbita moschata OX=3662 GN=LOC111431062 PE=3 SV=1	[more]
A0A6J1CWB0	2.29e-87	81.29	SKP1-like protein OS=Momordica charantia OX=3673 GN=LOC111014883 PE=3 SV=1	[more]

BLAST of Cp4.1LG08g13040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75950.1	2.3e-60	69.18	S phase kinase-associated protein 1	[more]
AT5G42190.1	3.3e-59	66.67	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein	[more]
AT4G34210.1	1.1e-54	66.88	SKP1-like 11	[more]
AT4G34470.1	2.5e-54	66.23	SKP1-like 12	[more]
AT1G20140.1	3.6e-53	63.13	SKP1-like 4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001232	S-phase kinase-associated protein 1-like	SMART	SM00512	skp1_3	coord: 4..105 e-value: 2.2E-49 score: 180.0
IPR016073	SKP1 component, POZ domain	PFAM	PF03931	Skp1_POZ	coord: 5..64 e-value: 2.7E-28 score: 97.9
IPR016072	SKP1 component, dimerisation	PFAM	PF01466	Skp1	coord: 106..153 e-value: 3.8E-29 score: 100.5
IPR011333	SKP1/BTB/POZ domain superfamily	GENE3D	3.30.710.10	Potassium Channel Kv1.1; Chain A	coord: 1..155 e-value: 2.9E-70 score: 237.6
IPR011333	SKP1/BTB/POZ domain superfamily	SUPERFAMILY	54695	POZ domain	coord: 6..65
IPR016897	S-phase kinase-associated protein 1	PIRSF	PIRSF028729	SCF_Skp	coord: 1..155 e-value: 6.8E-64 score: 212.6
IPR016897	S-phase kinase-associated protein 1	PANTHER	PTHR11165	SKP1	coord: 1..155
None	No IPR available	PANTHER	PTHR11165:SF145	PUTATIVE-RELATED	coord: 1..155
None	No IPR available	CDD	cd18322	BTB_POZ_SKP1	coord: 6..119 e-value: 8.99799E-57 score: 171.621
IPR036296	SKP1-like, dimerisation domain superfamily	SUPERFAMILY	81382	Skp1 dimerisation domain-like	coord: 78..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g13040.1	Cp4.1LG08g13040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0097602	cullin family protein binding