Cp4.1LG08g13030 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG08g13030
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionPentatricopeptide repeat-containing protein
LocationCp4.1LG08: 9382184 .. 9384843 (+)
RNA-Seq ExpressionCp4.1LG08g13030
SyntenyCp4.1LG08g13030
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGGGCTCCACTGGCGATCTTCGCGAGCTCTGGTGTCGAGAAATCGACCATTCTTCAGATTTCTAAGATCCATCTTCAACGATTGGAGTCGTAGGGAGTATCATCGCGATTCATATGATTACACGAAGTTATTACAACATTGCAGATCTATCAGAAGCGTTCAAGAACTTCATGCCCAGATCGTCGTTGAAGGTCATGACCAAAATGGATTCTTAGCCACGAAGCTAATCGGCAAATATGCCGAGTATGGCGAGGAAAAAATGGGAATTGCACGGAAGGTGTTCGATAGATTGCTTGAAAAAGATGTGTTCTTATGGAACGTGGTTATTCAAGGGTATGCGAATTGGGGTCCGTTTGCTGAAGCTCTAAACCTGTATGATGAAATGCGGGTCGGTGGCGAACCCACCAATCGCTACACATTTCCTTTTGTGTTGAAGGCATGTGGCGCCATGAAGAACGGTGACAAGGGGAAGATTGTTCATGGGCACGTTTTGAAATGTGGGTTGGACTTGGATTTGTTCGTGGGCAATGCTCTGATTGCGTTTTATTCCAAGTGCCAGGATGTTGAAACTGCTCGGAAGGTGTTTGATGAAATGTCTCTGAGAGACATTGTTAGTTGGAACTCCATGATTGCTGGGTATACTTTGAATGGGAAAGTGGATGAAGCTATTATGATTTTCCACGCCATGCTGCATAATCAAACTGCTTGCTCACCTGATAATGCAACTCTTGTTGGTATTCTCCCTGCTTGTGTTACAAAATCAGCTTCCCAAGTTGGCTTCTGGGTTCATTCCTACATTATAAAGACAGGAATGGAAGTTGGGGCCCCGTTGGGCAGTTGCCTTATCTCAATGTATGCTAACTGTGGTCATGTGAACATTGCGAGAGACGTTTTCGATCGAATCAAGGACAAAAACGTCATCGTATGGAGCGCGATCATAAGGTCTTACGGAATGCATGGTTTTGCAGATGAGGCATTAAACATGTTCACAAGTTTGGAAGAAGCTGGTCTAAAACCAGATGGCGTGATCTTCCTGAATTTGTTGTCGACGTGTAGTCACGCCGGGCTTGTAGAAAAAGGGCGCGAGATATACGAAAGGATGGAGGCTTATGGTGCAGAGAGGAAAGAGGAACATTATGCGTGCATGGTGGATCTCTTAGGGAGGGCTGGTTTCTTAGAACAAGCAGTAGAGTTCATTGAAGGCATGCCAGTGCAGGCAGGGAAAGATGTGTATGGTGCATTGCTTGGTGCTTGTAGGATACACAACAACATAGAGTTAGCTAAAGAAGTTGGGGATAAGTTGTTTGTTTTGGATCCCGAAAACGCAGGACGATACGTGATCTTAGCTAGTATGTATGAAGATGCAGGGCAGTGGGAAGATGCTGCTAAACTAAGGAAGTTGCTGAGAGATAGGAATATTAGGAAGCCGGTTGGTTGCAGTTCAATAGAGATAGATAGGATTAATCATGTGTTTGGGAAGGAGGATGAATCTCACCCCTTCACAGAACAAATTTTTGACACATTGGAGAAGCTTGAAAGGGTAATGGATGAAAATTTTGAACCTATTTAATGGAATCCACTTTGCAATTTTCCCTTCAATTGTTCATGTTTCTCATTTTTCTCCCTTGGAATTTGGATGTTCCACTTTAATTCACAACATTCTTGTTAAAAAAAACCTACCTACCACTAAACTCGACTGAGTTGTCTGTCCGAAATTCTAGGAAAACTCTAGGTTTAGCTTAAAAAACCTACTTACGACTCAACTCCGCTCTTTTCTTAAGGAAAGACTTAGTCTTACTGGGTCGATGCAGAATTCTAGGTTAGCTTTCAATTTCACTTGACAAAAGAATAGATTAAGTCTTCCTTCCTTTTTTTTATCGAAATTTTTTTCTTCATTCAAGGGTAAAATAAGTCAATTTCTTTCGTCGATTCAAACGCTGAGTTTGTTTTAAAGTCTTTCGACACTAAACGGACCTTTTGTTTAGCATTGATCATTTCTGCCAAATTGGACCCCATATGTCGTGCTAGTGACCACATTACGATTTAGAGCCAAGTAAAAAGACGAAGATCAAACTAAAACTAAGCCAAAACCATAAAACCAAATTGAAACCTTCAAACCATTGGAAGCATGGAAGTAAATTATAATCTTCAAAAACTTGGGTCCAAACCATATGGACAAAGTTTGTAATTTAACCTAACAATTTTAAGACTGATACTGAAAGTTCATTTGATACCAGTACAATTTACAAATAAAAACTAATACATAGTTGAGAAGCCTATTTCTTAGTAGAGTTTCTGAGTCAAACAAATTACAGTTTTCTTTACATAATCATTTGCTATTTGGTAAGGTACAAAGATACAGGGGAACGGACGGGCTAATTGTAAGATAATCAGTTTTTGCTTGTAATGTGTTCACAGATTCTTCATAGCAAAATAAACAAAGCTTCAGACAAGTTCTGTTCTCTGCCAAATCTAAATCAAATAATGTATTCTCATTCCAAGCAGCATGCCTTGATGAGTTGGGTCGTTTCTTTGCCTCTGCTCGTTCTCGGTTTTCGAGGGCCTGACATTTACAAATTACCTGCACAATCAGTACAATTATACAATGAAGGATTAACTACAACATGTTCTAAGAAATCACTTGCAAAAGGTTAA

mRNA sequence

ATGAATGGGCTCCACTGGCGATCTTCGCGAGCTCTGGTGTCGAGAAATCGACCATTCTTCAGATTTCTAAGATCCATCTTCAACGATTGGAGTCGTAGGGAGTATCATCGCGATTCATATGATTACACGAAGTTATTACAACATTGCAGATCTATCAGAAGCGTTCAAGAACTTCATGCCCAGATCGTCGTTGAAGGTCATGACCAAAATGGATTCTTAGCCACGAAGCTAATCGGCAAATATGCCGAGTATGGCGAGGAAAAAATGGGAATTGCACGGAAGGTGTTCGATAGATTGCTTGAAAAAGATGTGTTCTTATGGAACGTGGTTATTCAAGGGTATGCGAATTGGGGTCCGTTTGCTGAAGCTCTAAACCTGTATGATGAAATGCGGATTCTTCATAGCAAAATAAACAAAGCTTCAGACAAGTTCTGTTCTCTGCCAAATCTAAATCAAATAATGTATTCTCATTCCAAGCAGCATGCCTTGATGAGTTGGGTCGTTTCTTTGCCTCTGCTCGTTCTCGGTTTTCGAGGGCCTGACATTTACAAATTACCTGCACAATCAGTACAATTATACAATGAAGGATTAACTACAACATGTTCTAAGAAATCACTTGCAAAAGGTTAA

Coding sequence (CDS)

ATGAATGGGCTCCACTGGCGATCTTCGCGAGCTCTGGTGTCGAGAAATCGACCATTCTTCAGATTTCTAAGATCCATCTTCAACGATTGGAGTCGTAGGGAGTATCATCGCGATTCATATGATTACACGAAGTTATTACAACATTGCAGATCTATCAGAAGCGTTCAAGAACTTCATGCCCAGATCGTCGTTGAAGGTCATGACCAAAATGGATTCTTAGCCACGAAGCTAATCGGCAAATATGCCGAGTATGGCGAGGAAAAAATGGGAATTGCACGGAAGGTGTTCGATAGATTGCTTGAAAAAGATGTGTTCTTATGGAACGTGGTTATTCAAGGGTATGCGAATTGGGGTCCGTTTGCTGAAGCTCTAAACCTGTATGATGAAATGCGGATTCTTCATAGCAAAATAAACAAAGCTTCAGACAAGTTCTGTTCTCTGCCAAATCTAAATCAAATAATGTATTCTCATTCCAAGCAGCATGCCTTGATGAGTTGGGTCGTTTCTTTGCCTCTGCTCGTTCTCGGTTTTCGAGGGCCTGACATTTACAAATTACCTGCACAATCAGTACAATTATACAATGAAGGATTAACTACAACATGTTCTAAGAAATCACTTGCAAAAGGTTAA

Protein sequence

MNGLHWRSSRALVSRNRPFFRFLRSIFNDWSRREYHRDSYDYTKLLQHCRSIRSVQELHAQIVVEGHDQNGFLATKLIGKYAEYGEEKMGIARKVFDRLLEKDVFLWNVVIQGYANWGPFAEALNLYDEMRILHSKINKASDKFCSLPNLNQIMYSHSKQHALMSWVVSLPLLVLGFRGPDIYKLPAQSVQLYNEGLTTTCSKKSLAKG
Homology
[Close]
BLAST of Cp4.1LG08g13030 vs. ExPASy Swiss-Prot
Match: Q9LTV8 (Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H43 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.7e-10
Identity = 34/97 (35.05%), Postives = 57/97 (58.76%), Query Frame = 0 

Query: 36  HRDSYDYTKLLQHCRSIRSVQELHAQIVVEGHDQNGFLATKLIGKYAEYGEEKMGIARKV 95
           H DS+ Y  L+        ++++HA+++V G   +GFL TKLI   + +G+  +  AR+V
Sbjct: 19  HSDSF-YASLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGD--ITFARQV 78

Query: 96  FDRLLEKDVFLWNVVIQGYANWGPFAEALNLYDEMRI 133
           FD L    +F WN +I+GY+    F +AL +Y  M++
Sbjct: 79  FDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQL 112

[Close]
BLAST of Cp4.1LG08g13030 vs. ExPASy Swiss-Prot
Match: Q9C9I6 (Pentatricopeptide repeat-containing protein At1g71490 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E67 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 8.3e-10
Identity = 33/96 (34.38%), Postives = 53/96 (55.21%), Query Frame = 0 

Query: 38  DSYDYTKLLQHCRSIRSV---QELHAQIVVEGHDQNGFLATKLIGKYAEYGEEKMGIARK 97
           D++ Y  +L+ C     V   + +H  I V  +  + ++   LI  Y  +    MGIAR+
Sbjct: 143 DAFTYPSVLKACGETLDVAFGRVVHGSIEVSSYKSSLYVCNALISMYKRF--RNMGIARR 202

Query: 98  VFDRLLEKDVFLWNVVIQGYANWGPFAEALNLYDEM 131
           +FDR+ E+D   WN VI  YA+ G ++EA  L+D+M
Sbjct: 203 LFDRMFERDAVSWNAVINCYASEGMWSEAFELFDKM 236

[Close]
BLAST of Cp4.1LG08g13030 vs. ExPASy Swiss-Prot
Match: Q9STF3 (Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CRR2 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.9e-09
Identity = 35/97 (36.08%), Postives = 54/97 (55.67%), Query Frame = 0 

Query: 48  HCRSIRSVQELHAQIVVEGHDQNGFLATKLIGKYAEYGEEKMGIARKVFDRLLEKDVFLW 107
           H  S+     +H  I+  G DQ+ FLATKLIG Y++ G   +  ARKVFD+  ++ +++W
Sbjct: 89  HRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLG--SVDYARKVFDKTRKRTIYVW 148

Query: 108 NVVIQGYANWGPFAEALNLYDEMRILHSKINKASDKF 145
           N + +     G   E L LY +M    ++I   SD+F
Sbjct: 149 NALFRALTLAGHGEEVLGLYWKM----NRIGVESDRF 179

[Close]
BLAST of Cp4.1LG08g13030 vs. ExPASy Swiss-Prot
Match: Q9FFG8 (Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H17 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-08
Identity = 29/86 (33.72%), Postives = 50/86 (58.14%), Query Frame = 0 

Query: 46  LQHCRSIRSVQELHAQIVVEGHDQNGFLATKLIGKYAEYGEEKMGIARKVFDRLLEKDVF 105
           L  C ++  ++++H  ++ +G DQ+ ++ TKLI    + G      AR+V + +  ++ F
Sbjct: 56  LDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQFRNPF 115

Query: 106 LWNVVIQGYANWGPFAEALNLYDEMR 132
           LW  VI+GYA  G F EA+ +Y  MR
Sbjct: 116 LWTAVIRGYAIEGKFDEAIAMYGCMR 141

[Close]
BLAST of Cp4.1LG08g13030 vs. ExPASy Swiss-Prot
Match: O80488 (Pentatricopeptide repeat-containing protein At1g09190 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E70 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-08
Identity = 32/109 (29.36%), Postives = 59/109 (54.13%), Query Frame = 0 

Query: 25  SIFNDWSRREYHRDSYDYTKLLQHCRSIRSVQE---LHAQIVVEGHDQNGFLATKLIGKY 84
           S F+    R    D Y Y  LL+ C S+  ++    +H +++  G  + G +   ++  Y
Sbjct: 88  SFFSSMKSRGIWADEYTYAPLLKSCSSLSDLRFGKCVHGELIRTGFHRLGKIRIGVVELY 147

Query: 85  AEYGEEKMGIARKVFDRLLEKDVFLWNVVIQGYANWGPFAEALNLYDEM 131
              G  +MG A+KVFD + E++V +WN++I+G+ + G     L+L+ +M
Sbjct: 148 TSGG--RMGDAQKVFDEMSERNVVVWNLMIRGFCDSGDVERGLHLFKQM 194

[Close]
BLAST of Cp4.1LG08g13030 vs. NCBI nr
Match: XP_023540099.1 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 275 bits (703), Expect = 1.25e-86
Identity = 133/144 (92.36%), Postives = 136/144 (94.44%), Query Frame = 0 

Query: 1   MNGLHWRSSRALVSRNRPFFRFLRSIFNDWSRREYHRDSYDYTKLLQHCRSIRSVQELHA 60
           MNGLHWRSSRALVSRNRPFFRFLRSIFNDWSRREYHRDSYDYTKLLQHCRSIRSVQELHA
Sbjct: 1   MNGLHWRSSRALVSRNRPFFRFLRSIFNDWSRREYHRDSYDYTKLLQHCRSIRSVQELHA 60

Query: 61  QIVVEGHDQNGFLATKLIGKYAEYGEEKMGIARKVFDRLLEKDVFLWNVVIQGYANWGPF 120
           QIVVEGHDQNGFLATKLIGKYAEYGEEKMGIARKVFDRLLEKDVFLWNVVIQGYANWGPF
Sbjct: 61  QIVVEGHDQNGFLATKLIGKYAEYGEEKMGIARKVFDRLLEKDVFLWNVVIQGYANWGPF 120

Query: 121 AEALNLYDEMRILHSKINKASDKF 144
           AEALNLYDEMR+     N+ +  F
Sbjct: 121 AEALNLYDEMRVGGEPTNRYTFPF 144

[Close]
BLAST of Cp4.1LG08g13030 vs. NCBI nr
Match: KAG6596261.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 263 bits (672), Expect = 5.54e-82
Identity = 129/144 (89.58%), Postives = 134/144 (93.06%), Query Frame = 0 

Query: 1   MNGLHWRSSRALVSRNRPFFRFLRSIFNDWSRREYHRDSYDYTKLLQHCRSIRSVQELHA 60
           MNGL+ RSSRALVSRNRPFFRFLRSIFNDWSRREYHRDSYDYTKLLQHCRSIRSVQELHA
Sbjct: 1   MNGLYRRSSRALVSRNRPFFRFLRSIFNDWSRREYHRDSYDYTKLLQHCRSIRSVQELHA 60

Query: 61  QIVVEGHDQNGFLATKLIGKYAEYGEEKMGIARKVFDRLLEKDVFLWNVVIQGYANWGPF 120
           QIVVEGHDQNGFLATKLIGKYAEYGEEKM IARKVFDRLLEKDVF+WNVVIQGYANWGPF
Sbjct: 61  QIVVEGHDQNGFLATKLIGKYAEYGEEKMEIARKVFDRLLEKDVFVWNVVIQGYANWGPF 120

Query: 121 AEALNLYDEMRILHSKINKASDKF 144
           AEALNLYDEMR+     N+ +  F
Sbjct: 121 AEALNLYDEMRVGGEPTNRYTFPF 144

[Close]
BLAST of Cp4.1LG08g13030 vs. NCBI nr
Match: XP_022942131.1 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucurbita moschata] >KAG7027809.1 Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 262 bits (669), Expect = 1.56e-81
Identity = 128/144 (88.89%), Postives = 134/144 (93.06%), Query Frame = 0 

Query: 1   MNGLHWRSSRALVSRNRPFFRFLRSIFNDWSRREYHRDSYDYTKLLQHCRSIRSVQELHA 60
           MNGL+ RSSRALVSRNRPFFRFLRSIFNDWSRREYHRDSYDYTKLLQHCRSIRSV+ELHA
Sbjct: 1   MNGLYRRSSRALVSRNRPFFRFLRSIFNDWSRREYHRDSYDYTKLLQHCRSIRSVEELHA 60

Query: 61  QIVVEGHDQNGFLATKLIGKYAEYGEEKMGIARKVFDRLLEKDVFLWNVVIQGYANWGPF 120
           QIVVEGHDQNGFLATKLIGKYAEYGEEKM IARKVFDRLLEKDVF+WNVVIQGYANWGPF
Sbjct: 61  QIVVEGHDQNGFLATKLIGKYAEYGEEKMEIARKVFDRLLEKDVFVWNVVIQGYANWGPF 120

Query: 121 AEALNLYDEMRILHSKINKASDKF 144
           AEALNLYDEMR+     N+ +  F
Sbjct: 121 AEALNLYDEMRVGGEPTNRYTFPF 144

[Close]
BLAST of Cp4.1LG08g13030 vs. NCBI nr
Match: XP_022971604.1 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 260 bits (664), Expect = 8.72e-81
Identity = 127/144 (88.19%), Postives = 133/144 (92.36%), Query Frame = 0 

Query: 1   MNGLHWRSSRALVSRNRPFFRFLRSIFNDWSRREYHRDSYDYTKLLQHCRSIRSVQELHA 60
           MNGL+ R SRALVSR +PFFRFLRSIFNDWSRREYHRDSYDYTKLLQHCRSIRSVQELHA
Sbjct: 1   MNGLYRRYSRALVSRKQPFFRFLRSIFNDWSRREYHRDSYDYTKLLQHCRSIRSVQELHA 60

Query: 61  QIVVEGHDQNGFLATKLIGKYAEYGEEKMGIARKVFDRLLEKDVFLWNVVIQGYANWGPF 120
           QIVVEGHDQNGFLATKLIGKYAEYGEEKMGIARKVFDRLLEKDVF+WNVVIQGYANWGPF
Sbjct: 61  QIVVEGHDQNGFLATKLIGKYAEYGEEKMGIARKVFDRLLEKDVFVWNVVIQGYANWGPF 120

Query: 121 AEALNLYDEMRILHSKINKASDKF 144
           AEALNLYDEMR+     N+ +  F
Sbjct: 121 AEALNLYDEMRVGGEPTNRYTFPF 144

[Close]
BLAST of Cp4.1LG08g13030 vs. NCBI nr
Match: XP_022145276.1 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Momordica charantia])

HSP 1 Score: 212 bits (540), Expect = 2.55e-62
Identity = 103/144 (71.53%), Postives = 120/144 (83.33%), Query Frame = 0 

Query: 1   MNGLHWRSSRALVSRNRPFFRFLRSIFNDWSRREYHRDSYDYTKLLQHCRSIRSVQELHA 60
           M GL  R SR LV +N+PFFRFLR   +D S  EY RDSYDYT LLQHCR+IRSVQELHA
Sbjct: 1   MRGLRRRLSRTLVLKNQPFFRFLRFFLSDRSPGEYRRDSYDYTNLLQHCRTIRSVQELHA 60

Query: 61  QIVVEGHDQNGFLATKLIGKYAEYGEEKMGIARKVFDRLLEKDVFLWNVVIQGYANWGPF 120
           QI+VEG DQNGFLATKLIGKYAE+G+ KMG+ARKVFDRL+E+DVF+WNVVI+GYANWGPF
Sbjct: 61  QIIVEGLDQNGFLATKLIGKYAEHGDSKMGVARKVFDRLVERDVFVWNVVIRGYANWGPF 120

Query: 121 AEALNLYDEMRILHSKINKASDKF 144
            EALNL+DEMR+  +  N+ +  F
Sbjct: 121 DEALNLFDEMRVNGAPTNRYTFPF 144

[Close]
BLAST of Cp4.1LG08g13030 vs. ExPASy TrEMBL
Match: A0A6J1FMZ9 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111447289 PE=4 SV=1)

HSP 1 Score: 262 bits (669), Expect = 7.54e-82
Identity = 128/144 (88.89%), Postives = 134/144 (93.06%), Query Frame = 0 

Query: 1   MNGLHWRSSRALVSRNRPFFRFLRSIFNDWSRREYHRDSYDYTKLLQHCRSIRSVQELHA 60
           MNGL+ RSSRALVSRNRPFFRFLRSIFNDWSRREYHRDSYDYTKLLQHCRSIRSV+ELHA
Sbjct: 1   MNGLYRRSSRALVSRNRPFFRFLRSIFNDWSRREYHRDSYDYTKLLQHCRSIRSVEELHA 60

Query: 61  QIVVEGHDQNGFLATKLIGKYAEYGEEKMGIARKVFDRLLEKDVFLWNVVIQGYANWGPF 120
           QIVVEGHDQNGFLATKLIGKYAEYGEEKM IARKVFDRLLEKDVF+WNVVIQGYANWGPF
Sbjct: 61  QIVVEGHDQNGFLATKLIGKYAEYGEEKMEIARKVFDRLLEKDVFVWNVVIQGYANWGPF 120

Query: 121 AEALNLYDEMRILHSKINKASDKF 144
           AEALNLYDEMR+     N+ +  F
Sbjct: 121 AEALNLYDEMRVGGEPTNRYTFPF 144

[Close]
BLAST of Cp4.1LG08g13030 vs. ExPASy TrEMBL
Match: A0A6J1I919 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111470278 PE=4 SV=1)

HSP 1 Score: 260 bits (664), Expect = 4.22e-81
Identity = 127/144 (88.19%), Postives = 133/144 (92.36%), Query Frame = 0 

Query: 1   MNGLHWRSSRALVSRNRPFFRFLRSIFNDWSRREYHRDSYDYTKLLQHCRSIRSVQELHA 60
           MNGL+ R SRALVSR +PFFRFLRSIFNDWSRREYHRDSYDYTKLLQHCRSIRSVQELHA
Sbjct: 1   MNGLYRRYSRALVSRKQPFFRFLRSIFNDWSRREYHRDSYDYTKLLQHCRSIRSVQELHA 60

Query: 61  QIVVEGHDQNGFLATKLIGKYAEYGEEKMGIARKVFDRLLEKDVFLWNVVIQGYANWGPF 120
           QIVVEGHDQNGFLATKLIGKYAEYGEEKMGIARKVFDRLLEKDVF+WNVVIQGYANWGPF
Sbjct: 61  QIVVEGHDQNGFLATKLIGKYAEYGEEKMGIARKVFDRLLEKDVFVWNVVIQGYANWGPF 120

Query: 121 AEALNLYDEMRILHSKINKASDKF 144
           AEALNLYDEMR+     N+ +  F
Sbjct: 121 AEALNLYDEMRVGGEPTNRYTFPF 144

[Close]
BLAST of Cp4.1LG08g13030 vs. ExPASy TrEMBL
Match: A0A6J1CVV9 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111014767 PE=4 SV=1)

HSP 1 Score: 212 bits (540), Expect = 1.24e-62
Identity = 103/144 (71.53%), Postives = 120/144 (83.33%), Query Frame = 0 

Query: 1   MNGLHWRSSRALVSRNRPFFRFLRSIFNDWSRREYHRDSYDYTKLLQHCRSIRSVQELHA 60
           M GL  R SR LV +N+PFFRFLR   +D S  EY RDSYDYT LLQHCR+IRSVQELHA
Sbjct: 1   MRGLRRRLSRTLVLKNQPFFRFLRFFLSDRSPGEYRRDSYDYTNLLQHCRTIRSVQELHA 60

Query: 61  QIVVEGHDQNGFLATKLIGKYAEYGEEKMGIARKVFDRLLEKDVFLWNVVIQGYANWGPF 120
           QI+VEG DQNGFLATKLIGKYAE+G+ KMG+ARKVFDRL+E+DVF+WNVVI+GYANWGPF
Sbjct: 61  QIIVEGLDQNGFLATKLIGKYAEHGDSKMGVARKVFDRLVERDVFVWNVVIRGYANWGPF 120

Query: 121 AEALNLYDEMRILHSKINKASDKF 144
            EALNL+DEMR+  +  N+ +  F
Sbjct: 121 DEALNLFDEMRVNGAPTNRYTFPF 144

[Close]
BLAST of Cp4.1LG08g13030 vs. ExPASy TrEMBL
Match: A0A5A7UCB1 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00430 PE=4 SV=1)

HSP 1 Score: 182 bits (463), Expect = 2.48e-51
Identity = 96/146 (65.75%), Postives = 113/146 (77.40%), Query Frame = 0 

Query: 1   MNGLHWRSSRALVSRNRPFFRFLRSIFNDWSRREYHRDSYDYTKLLQHCRSIRSVQELHA 60
           MNGL+ R+ +AL  R++PFF   RS        +YHRDSYD+ KLL HCR+IRSVQELHA
Sbjct: 1   MNGLYRRTWQALTFRSQPFFSERRS-------GKYHRDSYDFMKLLGHCRTIRSVQELHA 60

Query: 61  QIVVEGHDQNGFLATKLIGKYAEYGE--EKMGIARKVFDRLLEKDVFLWNVVIQGYANWG 120
           QI+VEG DQNGFLATKLIGKY E GE   KMG ARKVFDRLL++DVFLWNVVIQGYA++G
Sbjct: 61  QILVEGLDQNGFLATKLIGKYVELGEGESKMGTARKVFDRLLQRDVFLWNVVIQGYASFG 120

Query: 121 PFAEALNLYDEMRILHSKINKASDKF 144
           PF EALNL+DEMR+     N+ +  F
Sbjct: 121 PFVEALNLFDEMRVSGEPTNRYTFPF 139

[Close]
BLAST of Cp4.1LG08g13030 vs. ExPASy TrEMBL
Match: A0A1S3BMB7 (pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103491107 PE=4 SV=1)

HSP 1 Score: 182 bits (463), Expect = 2.48e-51
Identity = 96/146 (65.75%), Postives = 113/146 (77.40%), Query Frame = 0 

Query: 1   MNGLHWRSSRALVSRNRPFFRFLRSIFNDWSRREYHRDSYDYTKLLQHCRSIRSVQELHA 60
           MNGL+ R+ +AL  R++PFF   RS        +YHRDSYD+ KLL HCR+IRSVQELHA
Sbjct: 1   MNGLYRRTWQALTFRSQPFFSERRS-------GKYHRDSYDFMKLLGHCRTIRSVQELHA 60

Query: 61  QIVVEGHDQNGFLATKLIGKYAEYGE--EKMGIARKVFDRLLEKDVFLWNVVIQGYANWG 120
           QI+VEG DQNGFLATKLIGKY E GE   KMG ARKVFDRLL++DVFLWNVVIQGYA++G
Sbjct: 61  QILVEGLDQNGFLATKLIGKYVELGEGESKMGTARKVFDRLLQRDVFLWNVVIQGYASFG 120

Query: 121 PFAEALNLYDEMRILHSKINKASDKF 144
           PF EALNL+DEMR+     N+ +  F
Sbjct: 121 PFVEALNLFDEMRVSGEPTNRYTFPF 139

[Close]
BLAST of Cp4.1LG08g13030 vs. TAIR 10
Match: AT3G12770.1 (mitochondrial editing factor 22 )

HSP 1 Score: 66.6 bits (161), Expect = 2.7e-11
Identity = 34/97 (35.05%), Postives = 57/97 (58.76%), Query Frame = 0 

Query: 36  HRDSYDYTKLLQHCRSIRSVQELHAQIVVEGHDQNGFLATKLIGKYAEYGEEKMGIARKV 95
           H DS+ Y  L+        ++++HA+++V G   +GFL TKLI   + +G+  +  AR+V
Sbjct: 19  HSDSF-YASLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGD--ITFARQV 78

Query: 96  FDRLLEKDVFLWNVVIQGYANWGPFAEALNLYDEMRI 133
           FD L    +F WN +I+GY+    F +AL +Y  M++
Sbjct: 79  FDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQL 112

[Close]
BLAST of Cp4.1LG08g13030 vs. TAIR 10
Match: AT1G71490.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 65.5 bits (158), Expect = 5.9e-11
Identity = 33/96 (34.38%), Postives = 53/96 (55.21%), Query Frame = 0 

Query: 38  DSYDYTKLLQHCRSIRSV---QELHAQIVVEGHDQNGFLATKLIGKYAEYGEEKMGIARK 97
           D++ Y  +L+ C     V   + +H  I V  +  + ++   LI  Y  +    MGIAR+
Sbjct: 143 DAFTYPSVLKACGETLDVAFGRVVHGSIEVSSYKSSLYVCNALISMYKRF--RNMGIARR 202

Query: 98  VFDRLLEKDVFLWNVVIQGYANWGPFAEALNLYDEM 131
           +FDR+ E+D   WN VI  YA+ G ++EA  L+D+M
Sbjct: 203 LFDRMFERDAVSWNAVINCYASEGMWSEAFELFDKM 236

[Close]
BLAST of Cp4.1LG08g13030 vs. TAIR 10
Match: AT3G46790.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-10
Identity = 35/97 (36.08%), Postives = 54/97 (55.67%), Query Frame = 0 

Query: 48  HCRSIRSVQELHAQIVVEGHDQNGFLATKLIGKYAEYGEEKMGIARKVFDRLLEKDVFLW 107
           H  S+     +H  I+  G DQ+ FLATKLIG Y++ G   +  ARKVFD+  ++ +++W
Sbjct: 89  HRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLG--SVDYARKVFDKTRKRTIYVW 148

Query: 108 NVVIQGYANWGPFAEALNLYDEMRILHSKINKASDKF 145
           N + +     G   E L LY +M    ++I   SD+F
Sbjct: 149 NALFRALTLAGHGEEVLGLYWKM----NRIGVESDRF 179

[Close]
BLAST of Cp4.1LG08g13030 vs. TAIR 10
Match: AT1G09190.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-09
Identity = 32/109 (29.36%), Postives = 59/109 (54.13%), Query Frame = 0 

Query: 25  SIFNDWSRREYHRDSYDYTKLLQHCRSIRSVQE---LHAQIVVEGHDQNGFLATKLIGKY 84
           S F+    R    D Y Y  LL+ C S+  ++    +H +++  G  + G +   ++  Y
Sbjct: 88  SFFSSMKSRGIWADEYTYAPLLKSCSSLSDLRFGKCVHGELIRTGFHRLGKIRIGVVELY 147

Query: 85  AEYGEEKMGIARKVFDRLLEKDVFLWNVVIQGYANWGPFAEALNLYDEM 131
              G  +MG A+KVFD + E++V +WN++I+G+ + G     L+L+ +M
Sbjct: 148 TSGG--RMGDAQKVFDEMSERNVVVWNLMIRGFCDSGDVERGLHLFKQM 194

[Close]
BLAST of Cp4.1LG08g13030 vs. TAIR 10
Match: AT5G44230.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-09
Identity = 29/86 (33.72%), Postives = 50/86 (58.14%), Query Frame = 0 

Query: 46  LQHCRSIRSVQELHAQIVVEGHDQNGFLATKLIGKYAEYGEEKMGIARKVFDRLLEKDVF 105
           L  C ++  ++++H  ++ +G DQ+ ++ TKLI    + G      AR+V + +  ++ F
Sbjct: 56  LDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQFRNPF 115

Query: 106 LWNVVIQGYANWGPFAEALNLYDEMR 132
           LW  VI+GYA  G F EA+ +Y  MR
Sbjct: 116 LWTAVIRGYAIEGKFDEAIAMYGCMR 141

The following BLAST results are available for this feature:
BLAST of Cp4.1LG08g13030 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LTV83.7e-1035.05Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana OX... [more]
Q9C9I68.3e-1034.38Pentatricopeptide repeat-containing protein At1g71490 OS=Arabidopsis thaliana OX... [more]
Q9STF31.9e-0936.08Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidop... [more]
Q9FFG81.6e-0833.72Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana OX... [more]
O804881.6e-0829.36Pentatricopeptide repeat-containing protein At1g09190 OS=Arabidopsis thaliana OX... [more]
BLAST of Cp4.1LG08g13030 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023540099.11.25e-8692.36pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucur... [more]
KAG6596261.15.54e-8289.58Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a... [more]
XP_022942131.11.56e-8188.89pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucur... [more]
XP_022971604.18.72e-8188.19pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucur... [more]
XP_022145276.12.55e-6271.53pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Momor... [more]
BLAST of Cp4.1LG08g13030 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FMZ97.54e-8288.89pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like OS=Cuc... [more]
A0A6J1I9194.22e-8188.19pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like OS=Cuc... [more]
A0A6J1CVV91.24e-6271.53pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like OS=Mom... [more]
A0A5A7UCB12.48e-5165.75Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3BMB72.48e-5165.75pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like OS=Cuc... [more]
BLAST of Cp4.1LG08g13030 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G12770.12.7e-1135.05mitochondrial editing factor 22 [more]
AT1G71490.15.9e-1134.38Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT3G46790.11.3e-1036.08Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G09190.11.1e-0929.36Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT5G44230.11.1e-0933.72Pentatricopeptide repeat (PPR) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 19..169
e-value: 1.5E-12
score: 49.6
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 106..131
e-value: 2.4E-5
score: 24.3
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 106..131
e-value: 3.1E-5
score: 21.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 103..137
score: 9.470621
NoneNo IPR availablePANTHERPTHR24015:SF1933PPR CONTAINING PLANT-LIKE PROTEINcoord: 30..141
NoneNo IPR availablePANTHERPTHR24015OS07G0578800 PROTEIN-RELATEDcoord: 30..141

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g13030.1Cp4.1LG08g13030.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009451 RNA modification
cellular_component GO:0043231 intracellular membrane-bounded organelle
molecular_function GO:0005515 protein binding
molecular_function GO:0003723 RNA binding