Cp4.1LG08g12540 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG08g12540
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Pentatricopeptide repeat superfamily protein
Location	Cp4.1LG08: 9019319 .. 9022874 (+)
RNA-Seq Expression	Cp4.1LG08g12540
Synteny	Cp4.1LG08g12540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGTTACGGTGTGAGCTACTAAGCTTGGTTCAGGCGGCACGGTTCTTGATGTCCATCCTCACCAATCCTGCTTCACCCATCTTCTCCAAAGCATTAGAGATCAAGAATTTCCTCGCCAATGGCGTCAACTGCTTCAAGCAGCTCAAGCATATCCATTGCCGCCTTCTCCGCCTCCATCTCGACCAAGATAACTACCTTCTCAATACGCTCTTATCTTGCGGCTTGGATTCTGGTTGCACAAATTATTCTAAACTTGTATTTTCTCAAGCCAAAGAGCCCAATATTTTCCTATGGAACACGATGATTCGTGGCTTGGTTTCCAAGGATTGCTTCGACGATGCCATCGACGTTTATGGGTCGATGCGTAGAGAGGGGTTTTTACCCAATAATTTCACTTTCCCTTTTGTTTTAAAAGCTTGTGCTAGGAAATTGGATATTCGATTGGGAGTGAAGATTCACACTCTTGTGGTGAAAGCCGGTTTTGATTATGATGTGTTTGTGAAGACCAGTTTGCTTTCTTTGTATGCAAAATGTGATAATCTGGAGAATGCACTCAAGGTGTTCGACGATATGCCTGATAAAAATGTGGTCTCTTGGACTGCTATTATCACTGGATATATAGGCAGTGGACAGTTTAGAGAAGCCATTGATGCATTCAAGAGGTTGCTTGAAATGGGATTGAGGCCTGATAGCTTCTCTCTTGTCAAAGTTCTGTCTGCCTGCGCTCAGCTTGGGGATTTCACTAGTGGTGAGTGGATTGATAGATATATAAGTGATTGTGGCTTTGTTAGAAATGTTTTTGTAGCTACTTCTTTGTTGGATATGTATGTTAAATGTGGAAACATGGAGCGAGCTAATCTGATATTTAATGCTATGTCGGAGAAGGATATTGTTTCTTGGAGTACCATGATTCAAGGCTATGCTTTCAATGGATTGCCTAAACAAGCGCTTGATCTTTTCTTTCAAATGCAGTCTGAAAATTTGAAGCCTGATTGTTATGCAATGGTTGGTGTTCTGTCTGCTTGTGCAAGGCTAGGAGCTTTAGATTTAGGCATTTGGGCTAGCGGTCTAATGGATCGACACGAGTTCTTGTCGAATCCAGTCCTTGGTACTGCTTTAATCGACATGTACTCTAAATGTGGTAGTGTGACTCGAGCTTGGGAAATCTTCCGATCGATGGAGAAGAAAGACCGCGTAGTTTGGAACGCCATGATAGTCGGGCTGTCCATGAATGGGCACGCCAAAGCTGTGTTTTCATTGTTTAGCCTCGTGGAGAAGCATGGAATTCGGCCTGACGAAAACACCTTCATTGGCCTGCTCTGTGGGTGCACTCATGGCGGTTTTGTCGATGAGGGGCGTCGATATTTCAATAGCATGAAGCGGGTGTTTTCGTTGACCCCTTCGATTGAGCATTATGGATGTATGGTGGATTTGCTTGGACGAGCGGGGTTATTAGACGAGGCTCATCGGTTGATAAACAGCATGCCAATGCAGCCTAATGCTGTTGTTTGGGGAGCCTTGTTGGGTGGATGTAGGTTGCATAGAGATTCCCACTTGGCTGAACAAGTACTTAAGAAACTTATTGAGTTGGAGCCATGGAACTCAGGAAACTACGTTCTGTTATCAAATATTTACTCTGCAAGTCATCGATGGGAGGAAGCTGAAAAGATCCGTTCAGCGATGAAGGAGAAGCGGATCCAGAAGATCCGTGGCTGCAGTTGGATTGAGATCGATGGGATCGTTCACGAGTTTCTAGTAGGAGACAAATCACACTCGTTGTCCGACAAAATATATGCAAAACTTGATGAACTGGGGAGAGAATTGAAGGCAGTTGGTCATGTTCCAACTACAGAATTTGTTCTTTTTGACATAGAAGAGGAGGAGAAGGAACATTTCCTTGGTTGCCACAGTGAGAAGCTAGCTGTGGCATTTGGTTTGATAAGTTCTCCTTCAAATCATGTTATTCGTGTTGTTAAAAACCTCCGTGTATGTGGTGATTGTCACGAGGCCATAAAGCTAATTTCCAAGATCACTGGAAGAGAGATCATCATAAGAGATACCAACCGGTTTCATACATTTATCGATGGTTCTTGCTCGTGTAAAGATTATTGGTGAAATTTGGATTAGAAGCGTACCGGGCACGACATTTCCTACGCATACAAACTAATTCTTAAAAATCAAGGTTAGTCCTTTCAACACTTTCTAAATAGAACACTAAATTTTAGAGTTTATAATTTTGTTGGCATAGATAGTAATATCAAATTTTTTAAACTTTTCTTAGACATGTCTCAGATTCATTGTGATATATTGTTAGTTCATTCATATATTCCTCCTTGACTCGTACATCACAGAAAGAGTCAACTCAATTTTCATCGATATGGAGCGAACCTAAGCATAAAAATAATAATATTAATTAGATTATTCTGTCATTGTTCTAATTTGTTAACTTAATCATAAAAATAATAATATTAAACATTGTTCATAGACGAGAATTTAAACTTCCAATTACTGTTAGATTCTGCTAGTAGTCTTAGTTTCAATTTGATTCTTACGGTATTAATTATTGCTAAGAATGATTCAATCAAAATTACAGACGTGCGTGTACAAGTTGAAGCAACAATCATGGCAACAGGAAGAATATGAAATTGGTACGCATTTTGGAGTTATATTATATATAAGATTGAGTTGAGAGTTTGTATCCTGTAATGGCGGCCGACAAAGCTAAAGACAAGAAGGCGAAAAGGGACATGGAAATGGAAGCTGCCAATGAGTCTGTAAATATGTTGTCTGAGCCTTCTCTCATTCTGTTGATCATCGGAATCGCTGAAGATGACGCCGATATTAGCAGATAAGCCAGAATCTGCATACCCGATTTTAATATCAGTTGAGATGGAGGGCATATTTGCAAAAAATTAAGAACTGTTGTCGAAATTGGCTTTAACCTGATCTCCAATGAAGTCGATTATGGCAGATTTTCGAGGTGGAAACATGGATATCGCAGTTGAAACTTCATGAATTTGTCGAAAAACTTGGGCGCCCGTATAAAAAGTGGACAGAATTGCTATTGCCAACACGTATCTGTTTCAATTTTTCAATACCTAATTAATTGTGTTTCTTTTAACAGCAAAGAAGTTTGTAATCGAAGCGACTGAAATTGTGTTACCTGATTTCTTCGTATTTGTCGAAGTTTTTCCAATCGCCATGTCTATTGCAAGCCATGATAAGGAAAGCAAGCAACGAAAAGACGAGACCAAATCCTCTCAGAGCCAAAACGCGGCGTTTTAGCAGATCTTCCCTCCCCCACCGGCTCAGGATCTCCGACACCCCGGAACTGGTCGCTGCCGGCGTTTGCATTTCGACATCGGGAGTCGGATTGGCAGATGGCGGCGGCGATTGCCTTCCGACATTGACCGTCGGGAGCGCGGACGGCGCCGTTTGCTTCGTTGCAGAGTCTTCTGGATTTGACATGGGTACAATTAGTGATTGGGGTTTTTTTCTTTTTTTCTTTTTTCTTTTTTTTTTCGGTGAGAAGAACTGAAAAGGAATTTCTAG

mRNA sequence

ATGGTTGCGGCACGGTTCTTGATGTCCATCCTCACCAATCCTGCTTCACCCATCTTCTCCAAAGCATTAGAGATCAAGAATTTCCTCGCCAATGGCGTCAACTGCTTCAAGCAGCTCAAGCATATCCATTGCCGCCTTCTCCGCCTCCATCTCGACCAAGATAACTACCTTCTCAATACGCTCTTATCTTGCGGCTTGGATTCTGGTTGCACAAATTATTCTAAACTTGTATTTTCTCAAGCCAAAGAGCCCAATATTTTCCTATGGAACACGATGATTCGTGGCTTGGTTTCCAAGGATTGCTTCGACGATGCCATCGACGTTTATGGGTCGATGCGTAGAGAGGGGTTTTTACCCAATAATTTCACTTTCCCTTTTGTTTTAAAAGCTTGTGCTAGGAAATTGGATATTCGATTGGGAGTGAAGATTCACACTCTTGTGGTGAAAGCCGGTTTTGATTATGATGTGTTTGTGAAGACCAGTTTGCTTTCTTTGTATGCAAAATGTGATAATCTGGAGAATGCACTCAAGGTGTTCGACGATATGCCTGATAAAAATGTGGTCTCTTGGACTGCTATTATCACTGGATATATAGGCAGTGGACAGTTTAGAGAAGCCATTGATGCATTCAAGAGGTTGCTTGAAATGGGATTGAGGCCTGATAGCTTCTCTCTTGTCAAAGTTCTGTCTGCCTGCGCTCAGCTTGGGGATTTCACTAGTGGTGAGTGGATTGATAGATATATAAGTGATTGTGGCTTTGTTAGAAATGTTTTTGTAGCTACTTCTTTGTTGGATATGTATGTTAAATGTGGAAACATGGAGCGAGCTAATCTGATATTTAATGCTATGTCGGAGAAGGATATTGTTTCTTGGAGTACCATGATTCAAGGCTATGCTTTCAATGGATTGCCTAAACAAGCGCTTGATCTTTTCTTTCAAATGCAGTCTGAAAATTTGAAGCCTGATTGTTATGCAATGACGTGCGTGTACAAGTTGAAGCAACAATCATGGCAACAGGAAGAATATGAAATTGGTACGCATTTTGGAAGTTTGTATCCTGTAATGGCGGCCGACAAAGCTAAAGACAAGAAGGCGAAAAGGGACATGGAAATGGAAGCTGCCAATGAGTCTTTTTTCCAATCGCCATGTCTATTGCAAGCCATGATAAGGAAAGCAAGCAACGAAAAGACGAGACCAAATCCTCTCAGAGCCAAAACGCGGCGTTTTAGCAGATCTTCCCTCCCCCACCGGCTCAGGATCTCCGACACCCCGGAACTGGTCGCTGCCGGCGTTTGCATTTCGACATCGGGAGTCGGATTGGCAGATGGCGGCGGCGATTGCCTTCCGACATTGACCGTCGGGAGCGCGGACGGCGCCGTTTGCTTCGTTGCAGAGTCTTCTGGATTTGACATGGGTACAATTAGTGATTGGGAACTGAAAAGGAATTTCTAG

Coding sequence (CDS)

ATGGTTGCGGCACGGTTCTTGATGTCCATCCTCACCAATCCTGCTTCACCCATCTTCTCCAAAGCATTAGAGATCAAGAATTTCCTCGCCAATGGCGTCAACTGCTTCAAGCAGCTCAAGCATATCCATTGCCGCCTTCTCCGCCTCCATCTCGACCAAGATAACTACCTTCTCAATACGCTCTTATCTTGCGGCTTGGATTCTGGTTGCACAAATTATTCTAAACTTGTATTTTCTCAAGCCAAAGAGCCCAATATTTTCCTATGGAACACGATGATTCGTGGCTTGGTTTCCAAGGATTGCTTCGACGATGCCATCGACGTTTATGGGTCGATGCGTAGAGAGGGGTTTTTACCCAATAATTTCACTTTCCCTTTTGTTTTAAAAGCTTGTGCTAGGAAATTGGATATTCGATTGGGAGTGAAGATTCACACTCTTGTGGTGAAAGCCGGTTTTGATTATGATGTGTTTGTGAAGACCAGTTTGCTTTCTTTGTATGCAAAATGTGATAATCTGGAGAATGCACTCAAGGTGTTCGACGATATGCCTGATAAAAATGTGGTCTCTTGGACTGCTATTATCACTGGATATATAGGCAGTGGACAGTTTAGAGAAGCCATTGATGCATTCAAGAGGTTGCTTGAAATGGGATTGAGGCCTGATAGCTTCTCTCTTGTCAAAGTTCTGTCTGCCTGCGCTCAGCTTGGGGATTTCACTAGTGGTGAGTGGATTGATAGATATATAAGTGATTGTGGCTTTGTTAGAAATGTTTTTGTAGCTACTTCTTTGTTGGATATGTATGTTAAATGTGGAAACATGGAGCGAGCTAATCTGATATTTAATGCTATGTCGGAGAAGGATATTGTTTCTTGGAGTACCATGATTCAAGGCTATGCTTTCAATGGATTGCCTAAACAAGCGCTTGATCTTTTCTTTCAAATGCAGTCTGAAAATTTGAAGCCTGATTGTTATGCAATGACGTGCGTGTACAAGTTGAAGCAACAATCATGGCAACAGGAAGAATATGAAATTGGTACGCATTTTGGAAGTTTGTATCCTGTAATGGCGGCCGACAAAGCTAAAGACAAGAAGGCGAAAAGGGACATGGAAATGGAAGCTGCCAATGAGTCTTTTTTCCAATCGCCATGTCTATTGCAAGCCATGATAAGGAAAGCAAGCAACGAAAAGACGAGACCAAATCCTCTCAGAGCCAAAACGCGGCGTTTTAGCAGATCTTCCCTCCCCCACCGGCTCAGGATCTCCGACACCCCGGAACTGGTCGCTGCCGGCGTTTGCATTTCGACATCGGGAGTCGGATTGGCAGATGGCGGCGGCGATTGCCTTCCGACATTGACCGTCGGGAGCGCGGACGGCGCCGTTTGCTTCGTTGCAGAGTCTTCTGGATTTGACATGGGTACAATTAGTGATTGGGAACTGAAAAGGAATTTCTAG

Protein sequence

MVAARFLMSILTNPASPIFSKALEIKNFLANGVNCFKQLKHIHCRLLRLHLDQDNYLLNTLLSCGLDSGCTNYSKLVFSQAKEPNIFLWNTMIRGLVSKDCFDDAIDVYGSMRREGFLPNNFTFPFVLKACARKLDIRLGVKIHTLVVKAGFDYDVFVKTSLLSLYAKCDNLENALKVFDDMPDKNVVSWTAIITGYIGSGQFREAIDAFKRLLEMGLRPDSFSLVKVLSACAQLGDFTSGEWIDRYISDCGFVRNVFVATSLLDMYVKCGNMERANLIFNAMSEKDIVSWSTMIQGYAFNGLPKQALDLFFQMQSENLKPDCYAMTCVYKLKQQSWQQEEYEIGTHFGSLYPVMAADKAKDKKAKRDMEMEAANESFFQSPCLLQAMIRKASNEKTRPNPLRAKTRRFSRSSLPHRLRISDTPELVAAGVCISTSGVGLADGGGDCLPTLTVGSADGAVCFVAESSGFDMGTISDWELKRNF

Homology

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BLAST of Cp4.1LG08g12540 vs. ExPASy Swiss-Prot
Match: Q9SR82 (Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H84 PE=3 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 1.6e-85
Identity = 155/320 (48.44%), Postives = 223/320 (69.69%), Query Frame = 0


Query: 8   MSILTNPASPIFSKALEIKNFLANGVNC-FKQLKHIHCRLLRLHLDQDNYLLNTLLSCGL 67
           MSI+T P++   SK  +IK  ++  V C    LK IH  L+  HL  D +L+N LL   L
Sbjct: 1   MSIVTVPSAT--SKVQQIKTLIS--VACTVNHLKQIHVSLINHHLHHDTFLVNLLLKRTL 60

Query: 68  DSGCTNYSKLVFSQAKEPNIFLWNTMIRGLVSKDCFDDAIDVYGSMRREGFLPNNFTFPF 127
               T YS L+FS  + PNIFL+N++I G V+   F + +D++ S+R+ G   + FTFP 
Sbjct: 61  FFRQTKYSYLLFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPL 120

Query: 128 VLKACARKLDIRLGVKIHTLVVKAGFDYDVFVKTSLLSLYAKCDNLENALKVFDDMPDKN 187
           VLKAC R    +LG+ +H+LVVK GF++DV   TSLLS+Y+    L +A K+FD++PD++
Sbjct: 121 VLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRS 180

Query: 188 VVSWTAIITGYIGSGQFREAIDAFKRLLEMGLRPDSFSLVKVLSACAQLGDFTSGEWIDR 247
           VV+WTA+ +GY  SG+ REAID FK+++EMG++PDS+ +V+VLSAC  +GD  SGEWI +
Sbjct: 181 VVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVK 240

Query: 248 YISDCGFVRNVFVATSLLDMYVKCGNMERANLIFNAMSEKDIVSWSTMIQGYAFNGLPKQ 307
           Y+ +    +N FV T+L+++Y KCG ME+A  +F++M EKDIV+WSTMIQGYA N  PK+
Sbjct: 241 YMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKE 300

Query: 308 ALDLFFQMQSENLKPDCYAM 327
            ++LF QM  ENLKPD +++
Sbjct: 301 GIELFLQMLQENLKPDQFSI 316

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BLAST of Cp4.1LG08g12540 vs. ExPASy Swiss-Prot
Match: Q9LN01 (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 5.2e-55
Identity = 118/335 (35.22%), Postives = 182/335 (54.33%), Query Frame = 0


Query: 29  LANGVNCFKQLKHIHCRLLRLHLDQDNYLLNTLLS-CGLDSGCTN--YSKLVFSQAKEPN 88
           L +     + L+ IH +++++ L   NY L+ L+  C L        Y+  VF   +EPN
Sbjct: 39  LLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPN 98

Query: 89  IFLWNTMIRGLVSKDCFDDAIDVYGSMRREGFLPNNFTFPFVLKACARKLDIRLGVKIHT 148
           + +WNTM RG         A+ +Y  M   G LPN++TFPFVLK+CA+    + G +IH 
Sbjct: 99  LLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHG 158

Query: 149 LVVKAGFDYDVFVKTSLLSLYAKCDNL-------------------------------EN 208
            V+K G D D++V TSL+S+Y +   L                               EN
Sbjct: 159 HVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIEN 218

Query: 209 ALKVFDDMPDKNVVSWTAIITGYIGSGQFREAIDAFKRLLEMGLRPDSFSLVKVLSACAQ 268
           A K+FD++P K+VVSW A+I+GY  +G ++EA++ FK +++  +RPD  ++V V+SACAQ
Sbjct: 219 AQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQ 278

Query: 269 LGDFTSGEWIDRYISDCGFVRNVFVATSLLDMYVKCGNMERANLIFNAMSEKDIVSWSTM 328
            G    G  +  +I D GF  N+ +  +L+D+Y KCG +E A  +F  +  KD++SW+T+
Sbjct: 279 SGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTL 338

Query: 329 IQGYAFNGLPKQALDLFFQMQSENLKPDCYAMTCV 330
           I GY    L K+AL LF +M      P+   M  +
Sbjct: 339 IGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSI 373

[Close]

BLAST of Cp4.1LG08g12540 vs. ExPASy Swiss-Prot
Match: Q9LTV8 (Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H43 PE=2 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 6.8e-55
Identity = 107/292 (36.64%), Postives = 172/292 (58.90%), Query Frame = 0


Query: 38  QLKHIHCRLLRLHLDQDNYLLNTLLSCGLDSGCTNYSKLVFSQAKEPNIFLWNTMIRGLV 97
           QLK IH RLL L L    +L+  L+      G   +++ VF     P IF WN +IRG  
Sbjct: 36  QLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYS 95

Query: 98  SKDCFDDAIDVYGSMRREGFLPNNFTFPFVLKACARKLDIRLGVKIHTLVVKAGFDYDVF 157
             + F DA+ +Y +M+     P++FTFP +LKAC+    +++G  +H  V + GFD DVF
Sbjct: 96  RNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVF 155

Query: 158 VKTSLLSLYAKCDNLENALKVFD--DMPDKNVVSWTAIITGYIGSGQFREAIDAFKRLLE 217
           V+  L++LYAKC  L +A  VF+   +P++ +VSWTAI++ Y  +G+  EA++ F ++ +
Sbjct: 156 VQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRK 215

Query: 218 MGLRPDSFSLVKVLSACAQLGDFTSGEWIDRYISDCGFVRNVFVATSLLDMYVKCGNMER 277
           M ++PD  +LV VL+A   L D   G  I   +   G      +  SL  MY KCG +  
Sbjct: 216 MDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVAT 275

Query: 278 ANLIFNAMSEKDIVSWSTMIQGYAFNGLPKQALDLFFQMQSENLKPDCYAMT 328
           A ++F+ M   +++ W+ MI GYA NG  ++A+D+F +M +++++PD  ++T
Sbjct: 276 AKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISIT 327

[Close]

BLAST of Cp4.1LG08g12540 vs. ExPASy Swiss-Prot
Match: Q38959 (Pentatricopeptide repeat-containing protein At3g26630, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-A6 PE=2 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.2e-54
Identity = 122/345 (35.36%), Postives = 186/345 (53.91%), Query Frame = 0


Query: 13  NPASPIFSKALEIKNFLANGVNCFKQLKHIHCRLLRLHLDQDNYLLNTLLSCGLDSGCTN 72
           N  SP   ++ E   FL    N F QLK IH ++++ +L  D  L+  L+S     G T 
Sbjct: 11  NLLSPPPFRSPEASYFLRTCSN-FSQLKQIHTKIIKHNLTNDQLLVRQLISVSSSFGETQ 70

Query: 73  YSKLVFSQAKEPNIFLWNTMIRGLVSKDCFDDAIDVYGSM---RREGFLPNNFTFPFVLK 132
           Y+ LVF+Q + P+ F WN MIR L       +A+ ++  M    +  F  + FTFPFV+K
Sbjct: 71  YASLVFNQLQSPSTFTWNLMIRSLSVNHKPREALLLFILMMISHQSQF--DKFTFPFVIK 130

Query: 133 ACARKLDIRLGVKIHTLVVKAGFDYDVFVKTSLLSLYAKCDNLENALKVFDDMPD----- 192
           AC     IRLG ++H L +KAGF  DVF + +L+ LY KC   ++  KVFD MP      
Sbjct: 131 ACLASSSIRLGTQVHGLAIKAGFFNDVFFQNTLMDLYFKCGKPDSGRKVFDKMPGRSIVS 190

Query: 193 --------------------------KNVVSWTAIITGYIGSGQFREAIDAFKRLLEMGL 252
                                     +NVVSWTA+IT Y+ + +  EA   F+R+    +
Sbjct: 191 WTTMLYGLVSNSQLDSAEIVFNQMPMRNVVSWTAMITAYVKNRRPDEAFQLFRRMQVDDV 250

Query: 253 RPDSFSLVKVLSACAQLGDFTSGEWIDRYISDCGFVRNVFVATSLLDMYVKCGNMERANL 312
           +P+ F++V +L A  QLG  + G W+  Y    GFV + F+ T+L+DMY KCG+++ A  
Sbjct: 251 KPNEFTIVNLLQASTQLGSLSMGRWVHDYAHKNGFVLDCFLGTALIDMYSKCGSLQDARK 310

Query: 313 IFNAMSEKDIVSWSTMIQGYAFNGLPKQALDLFFQMQSE-NLKPD 323
           +F+ M  K + +W++MI     +G  ++AL LF +M+ E +++PD
Sbjct: 311 VFDVMQGKSLATWNSMITSLGVHGCGEEALSLFEEMEEEASVEPD 352

[Close]

BLAST of Cp4.1LG08g12540 vs. ExPASy Swiss-Prot
Match: A8MQA3 (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 214.9 bits (546), Expect = 2.0e-54
Identity = 101/253 (39.92%), Postives = 165/253 (65.22%), Query Frame = 0


Query: 72  NYSKLVFSQAKEP-NIFLWNTMIRGLVSKDCFDDAIDVYGSMRREGFL-PNNFTFPFVLK 131
           +Y+  VFS+ ++P N+F+WNT+IRG         A  +Y  MR  G + P+  T+PF++K
Sbjct: 70  SYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIK 129

Query: 132 ACARKLDIRLGVKIHTLVVKAGFDYDVFVKTSLLSLYAKCDNLENALKVFDDMPDKNVVS 191
           A     D+RLG  IH++V+++GF   ++V+ SLL LYA C ++ +A KVFD MP+K++V+
Sbjct: 130 AVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVA 189

Query: 192 WTAIITGYIGSGQFREAIDAFKRLLEMGLRPDSFSLVKVLSACAQLGDFTSGEWIDRYIS 251
           W ++I G+  +G+  EA+  +  +   G++PD F++V +LSACA++G  T G+ +  Y+ 
Sbjct: 190 WNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMI 249

Query: 252 DCGFVRNVFVATSLLDMYVKCGNMERANLIFNAMSEKDIVSWSTMIQGYAFNGLPKQALD 311
             G  RN+  +  LLD+Y +CG +E A  +F+ M +K+ VSW+++I G A NG  K+A++
Sbjct: 250 KVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIE 309

Query: 312 LFFQMQS-ENLKP 322
           LF  M+S E L P
Sbjct: 310 LFKYMESTEGLLP 322

[Close]

BLAST of Cp4.1LG08g12540 vs. NCBI nr
Match: XP_023538778.1 (putative pentatricopeptide repeat-containing protein At3g08820 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 653 bits (1684), Expect = 4.66e-228
Identity = 320/322 (99.38%), Postives = 320/322 (99.38%), Query Frame = 0


Query: 8   MSILTNPASPIFSKALEIKNFLANGVNCFKQLKHIHCRLLRLHLDQDNYLLNTLLSCGLD 67
           MSILTNPASPIFSKALEIKNFLANGVNCFKQLKHIHCRLLRLHLDQDNYLLNTLLSCGLD
Sbjct: 1   MSILTNPASPIFSKALEIKNFLANGVNCFKQLKHIHCRLLRLHLDQDNYLLNTLLSCGLD 60

Query: 68  SGCTNYSKLVFSQAKEPNIFLWNTMIRGLVSKDCFDDAIDVYGSMRREGFLPNNFTFPFV 127
           SGCTNYSKLVFSQAKEPNIFLWNTMIRGLVSKDCFDDAIDVYGSMRREGFLPNNFTFPFV
Sbjct: 61  SGCTNYSKLVFSQAKEPNIFLWNTMIRGLVSKDCFDDAIDVYGSMRREGFLPNNFTFPFV 120

Query: 128 LKACARKLDIRLGVKIHTLVVKAGFDYDVFVKTSLLSLYAKCDNLENALKVFDDMPDKNV 187
           LKACARKLDIRLGVKIHTLVVKAGFDYDVFVKTSLLSLYAKCDNLENALKVFDDMPDKNV
Sbjct: 121 LKACARKLDIRLGVKIHTLVVKAGFDYDVFVKTSLLSLYAKCDNLENALKVFDDMPDKNV 180

Query: 188 VSWTAIITGYIGSGQFREAIDAFKRLLEMGLRPDSFSLVKVLSACAQLGDFTSGEWIDRY 247
           VSWTAIITGYIGSGQFREAIDAFKRLLEMGLRPDSFSLVKVLSACAQLGDFTSGEWIDRY
Sbjct: 181 VSWTAIITGYIGSGQFREAIDAFKRLLEMGLRPDSFSLVKVLSACAQLGDFTSGEWIDRY 240

Query: 248 ISDCGFVRNVFVATSLLDMYVKCGNMERANLIFNAMSEKDIVSWSTMIQGYAFNGLPKQA 307
           ISDCGFVRNVFVATSLLDMYVKCGNMERANLIFNAMSEKDIVSWSTMIQGYAFNGLPKQA
Sbjct: 241 ISDCGFVRNVFVATSLLDMYVKCGNMERANLIFNAMSEKDIVSWSTMIQGYAFNGLPKQA 300

Query: 308 LDLFFQMQSENLKPDCYAMTCV 329
           LDLFFQMQSENLKPDCYAM  V
Sbjct: 301 LDLFFQMQSENLKPDCYAMVGV 322

[Close]

BLAST of Cp4.1LG08g12540 vs. NCBI nr
Match: KAG6596322.1 (putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 648 bits (1671), Expect = 4.36e-226
Identity = 316/322 (98.14%), Postives = 319/322 (99.07%), Query Frame = 0


Query: 8   MSILTNPASPIFSKALEIKNFLANGVNCFKQLKHIHCRLLRLHLDQDNYLLNTLLSCGLD 67
           MSILTNPASP+FSKALEIKN+LANGVNCFKQLKHIHCRLLRLHLDQDNYLLNTLLSCGLD
Sbjct: 1   MSILTNPASPVFSKALEIKNYLANGVNCFKQLKHIHCRLLRLHLDQDNYLLNTLLSCGLD 60

Query: 68  SGCTNYSKLVFSQAKEPNIFLWNTMIRGLVSKDCFDDAIDVYGSMRREGFLPNNFTFPFV 127
           SGCTNY+KLVFSQAKEPNIFLWNTMIRGLVSKDCFDDAIDVYGSMRREGFLPNNFTFPFV
Sbjct: 61  SGCTNYTKLVFSQAKEPNIFLWNTMIRGLVSKDCFDDAIDVYGSMRREGFLPNNFTFPFV 120

Query: 128 LKACARKLDIRLGVKIHTLVVKAGFDYDVFVKTSLLSLYAKCDNLENALKVFDDMPDKNV 187
           LKACARKLDIRLGVKIHTLVVKAGFDYDVFVKTSLLSLYAKCDNLENALKVFDDMPDKNV
Sbjct: 121 LKACARKLDIRLGVKIHTLVVKAGFDYDVFVKTSLLSLYAKCDNLENALKVFDDMPDKNV 180

Query: 188 VSWTAIITGYIGSGQFREAIDAFKRLLEMGLRPDSFSLVKVLSACAQLGDFTSGEWIDRY 247
           VSWTAIITGYIGSGQFREAIDAFKRLLEMGLRPDSFSLVKVLSACAQLGDFTSGEWIDRY
Sbjct: 181 VSWTAIITGYIGSGQFREAIDAFKRLLEMGLRPDSFSLVKVLSACAQLGDFTSGEWIDRY 240

Query: 248 ISDCGFVRNVFVATSLLDMYVKCGNMERANLIFNAMSEKDIVSWSTMIQGYAFNGLPKQA 307
           ISDCG VRNVFVATSLLDMYVKCGNMERANLIFNAMSEKDIVSWSTMIQGYAFNGLPKQA
Sbjct: 241 ISDCGLVRNVFVATSLLDMYVKCGNMERANLIFNAMSEKDIVSWSTMIQGYAFNGLPKQA 300

Query: 308 LDLFFQMQSENLKPDCYAMTCV 329
           LDLFFQMQSENLKPDCYAM  V
Sbjct: 301 LDLFFQMQSENLKPDCYAMVGV 322

[Close]

BLAST of Cp4.1LG08g12540 vs. NCBI nr
Match: KAG7027873.1 (putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 648 bits (1671), Expect = 5.53e-226
Identity = 316/322 (98.14%), Postives = 319/322 (99.07%), Query Frame = 0


Query: 8   MSILTNPASPIFSKALEIKNFLANGVNCFKQLKHIHCRLLRLHLDQDNYLLNTLLSCGLD 67
           MSILTNPASP+FSKALEIKN+LANGVNCFKQLKHIHCRLLRLHLDQDNYLLNTLLSCGLD
Sbjct: 1   MSILTNPASPVFSKALEIKNYLANGVNCFKQLKHIHCRLLRLHLDQDNYLLNTLLSCGLD 60

Query: 68  SGCTNYSKLVFSQAKEPNIFLWNTMIRGLVSKDCFDDAIDVYGSMRREGFLPNNFTFPFV 127
           SGCTNY+KLVFSQAKEPNIFLWNTMIRGLVSKDCFDDAIDVYGSMRREGFLPNNFTFPFV
Sbjct: 61  SGCTNYTKLVFSQAKEPNIFLWNTMIRGLVSKDCFDDAIDVYGSMRREGFLPNNFTFPFV 120

Query: 128 LKACARKLDIRLGVKIHTLVVKAGFDYDVFVKTSLLSLYAKCDNLENALKVFDDMPDKNV 187
           LKACARKLDIRLGVKIHTLVVKAGFDYDVFVKTSLLSLYAKCDNLENALKVFDDMPDKNV
Sbjct: 121 LKACARKLDIRLGVKIHTLVVKAGFDYDVFVKTSLLSLYAKCDNLENALKVFDDMPDKNV 180

Query: 188 VSWTAIITGYIGSGQFREAIDAFKRLLEMGLRPDSFSLVKVLSACAQLGDFTSGEWIDRY 247
           VSWTAIITGYIGSGQFREAIDAFKRLLEMGLRPDSFSLVKVLSACAQLGDFTSGEWIDRY
Sbjct: 181 VSWTAIITGYIGSGQFREAIDAFKRLLEMGLRPDSFSLVKVLSACAQLGDFTSGEWIDRY 240

Query: 248 ISDCGFVRNVFVATSLLDMYVKCGNMERANLIFNAMSEKDIVSWSTMIQGYAFNGLPKQA 307
           ISDCG VRNVFVATSLLDMYVKCGNMERANLIFNAMSEKDIVSWSTMIQGYAFNGLPKQA
Sbjct: 241 ISDCGLVRNVFVATSLLDMYVKCGNMERANLIFNAMSEKDIVSWSTMIQGYAFNGLPKQA 300

Query: 308 LDLFFQMQSENLKPDCYAMTCV 329
           LDLFFQMQSENLKPDCYAM  V
Sbjct: 301 LDLFFQMQSENLKPDCYAMVGV 322

[Close]

BLAST of Cp4.1LG08g12540 vs. NCBI nr
Match: XP_022971519.1 (putative pentatricopeptide repeat-containing protein At3g08820 [Cucurbita maxima] >XP_022971520.1 putative pentatricopeptide repeat-containing protein At3g08820 [Cucurbita maxima])

HSP 1 Score: 646 bits (1667), Expect = 1.76e-225
Identity = 315/322 (97.83%), Postives = 318/322 (98.76%), Query Frame = 0


Query: 8   MSILTNPASPIFSKALEIKNFLANGVNCFKQLKHIHCRLLRLHLDQDNYLLNTLLSCGLD 67
           MSILTNPASP+FSKALEIKN+LANGVNCFKQLKHIHCRLLRLH DQDNYLLNTLLSCGLD
Sbjct: 1   MSILTNPASPVFSKALEIKNYLANGVNCFKQLKHIHCRLLRLHFDQDNYLLNTLLSCGLD 60

Query: 68  SGCTNYSKLVFSQAKEPNIFLWNTMIRGLVSKDCFDDAIDVYGSMRREGFLPNNFTFPFV 127
           SGCTNY+KLVFSQAKEPNIFLWNTMIRGLVSKDCFDDAIDVYGSMRREGFLPNNFTFPFV
Sbjct: 61  SGCTNYTKLVFSQAKEPNIFLWNTMIRGLVSKDCFDDAIDVYGSMRREGFLPNNFTFPFV 120

Query: 128 LKACARKLDIRLGVKIHTLVVKAGFDYDVFVKTSLLSLYAKCDNLENALKVFDDMPDKNV 187
           LKACARKLDIRLGVKIHTLVVKAGFDYDVFVKTSLLSLYAKCDNLENALKVFDDMPDKNV
Sbjct: 121 LKACARKLDIRLGVKIHTLVVKAGFDYDVFVKTSLLSLYAKCDNLENALKVFDDMPDKNV 180

Query: 188 VSWTAIITGYIGSGQFREAIDAFKRLLEMGLRPDSFSLVKVLSACAQLGDFTSGEWIDRY 247
           VSWTAIITGYIGSGQFREAIDAFKRLLEMGLRPDSFSLVKVLSACAQLGDFTSGEWIDRY
Sbjct: 181 VSWTAIITGYIGSGQFREAIDAFKRLLEMGLRPDSFSLVKVLSACAQLGDFTSGEWIDRY 240

Query: 248 ISDCGFVRNVFVATSLLDMYVKCGNMERANLIFNAMSEKDIVSWSTMIQGYAFNGLPKQA 307
           ISDCG VRNVFVATSLLDMYVKCGNMERANLIFNAMSEKDIVSWSTMIQGYAFNGLPKQA
Sbjct: 241 ISDCGLVRNVFVATSLLDMYVKCGNMERANLIFNAMSEKDIVSWSTMIQGYAFNGLPKQA 300

Query: 308 LDLFFQMQSENLKPDCYAMTCV 329
           LDLFFQMQSENLKPDCYAM  V
Sbjct: 301 LDLFFQMQSENLKPDCYAMVGV 322

[Close]

BLAST of Cp4.1LG08g12540 vs. NCBI nr
Match: XP_022951275.1 (putative pentatricopeptide repeat-containing protein At3g08820 [Cucurbita moschata] >XP_022951285.1 putative pentatricopeptide repeat-containing protein At3g08820 [Cucurbita moschata])

HSP 1 Score: 645 bits (1665), Expect = 3.43e-225
Identity = 316/322 (98.14%), Postives = 319/322 (99.07%), Query Frame = 0


Query: 8   MSILTNPASPIFSKALEIKNFLANGVNCFKQLKHIHCRLLRLHLDQDNYLLNTLLSCGLD 67
           MSILTNPASP+FSKALEIKN+LANGVNCFKQLKHIHCRLLRLHLDQDNYLLNTLLS GLD
Sbjct: 1   MSILTNPASPVFSKALEIKNYLANGVNCFKQLKHIHCRLLRLHLDQDNYLLNTLLSSGLD 60

Query: 68  SGCTNYSKLVFSQAKEPNIFLWNTMIRGLVSKDCFDDAIDVYGSMRREGFLPNNFTFPFV 127
           SGCT+YSKLVFSQAKEPNIFLWNTMIRGLVSKDCFDDAIDVYGSMRREGFLPNNFTFPFV
Sbjct: 61  SGCTDYSKLVFSQAKEPNIFLWNTMIRGLVSKDCFDDAIDVYGSMRREGFLPNNFTFPFV 120

Query: 128 LKACARKLDIRLGVKIHTLVVKAGFDYDVFVKTSLLSLYAKCDNLENALKVFDDMPDKNV 187
           LKACARKLDIRLGVKIHTLVVKAGFDYDVFVKTSLLSLYAKCDNLENALKVFDDMPDKNV
Sbjct: 121 LKACARKLDIRLGVKIHTLVVKAGFDYDVFVKTSLLSLYAKCDNLENALKVFDDMPDKNV 180

Query: 188 VSWTAIITGYIGSGQFREAIDAFKRLLEMGLRPDSFSLVKVLSACAQLGDFTSGEWIDRY 247
           VSWTAIITGYIGSGQFREAIDAFKRLLEMGLRPDSFSLVKVLSACAQLGDFTSGEWIDRY
Sbjct: 181 VSWTAIITGYIGSGQFREAIDAFKRLLEMGLRPDSFSLVKVLSACAQLGDFTSGEWIDRY 240

Query: 248 ISDCGFVRNVFVATSLLDMYVKCGNMERANLIFNAMSEKDIVSWSTMIQGYAFNGLPKQA 307
           ISDCGFVRNVFVATSLLDMYVKCGNMERANLIFNAMSEKDIVSWSTMIQGYAFNGLPKQA
Sbjct: 241 ISDCGFVRNVFVATSLLDMYVKCGNMERANLIFNAMSEKDIVSWSTMIQGYAFNGLPKQA 300

Query: 308 LDLFFQMQSENLKPDCYAMTCV 329
           LDLFFQMQSENLKPDCYAM  V
Sbjct: 301 LDLFFQMQSENLKPDCYAMVGV 322

[Close]

BLAST of Cp4.1LG08g12540 vs. ExPASy TrEMBL
Match: A0A6J1I8T1 (putative pentatricopeptide repeat-containing protein At3g08820 OS=Cucurbita maxima OX=3661 GN=LOC111470216 PE=3 SV=1)

HSP 1 Score: 646 bits (1667), Expect = 8.54e-226
Identity = 315/322 (97.83%), Postives = 318/322 (98.76%), Query Frame = 0


Query: 8   MSILTNPASPIFSKALEIKNFLANGVNCFKQLKHIHCRLLRLHLDQDNYLLNTLLSCGLD 67
           MSILTNPASP+FSKALEIKN+LANGVNCFKQLKHIHCRLLRLH DQDNYLLNTLLSCGLD
Sbjct: 1   MSILTNPASPVFSKALEIKNYLANGVNCFKQLKHIHCRLLRLHFDQDNYLLNTLLSCGLD 60

Query: 68  SGCTNYSKLVFSQAKEPNIFLWNTMIRGLVSKDCFDDAIDVYGSMRREGFLPNNFTFPFV 127
           SGCTNY+KLVFSQAKEPNIFLWNTMIRGLVSKDCFDDAIDVYGSMRREGFLPNNFTFPFV
Sbjct: 61  SGCTNYTKLVFSQAKEPNIFLWNTMIRGLVSKDCFDDAIDVYGSMRREGFLPNNFTFPFV 120

Query: 128 LKACARKLDIRLGVKIHTLVVKAGFDYDVFVKTSLLSLYAKCDNLENALKVFDDMPDKNV 187
           LKACARKLDIRLGVKIHTLVVKAGFDYDVFVKTSLLSLYAKCDNLENALKVFDDMPDKNV
Sbjct: 121 LKACARKLDIRLGVKIHTLVVKAGFDYDVFVKTSLLSLYAKCDNLENALKVFDDMPDKNV 180

Query: 188 VSWTAIITGYIGSGQFREAIDAFKRLLEMGLRPDSFSLVKVLSACAQLGDFTSGEWIDRY 247
           VSWTAIITGYIGSGQFREAIDAFKRLLEMGLRPDSFSLVKVLSACAQLGDFTSGEWIDRY
Sbjct: 181 VSWTAIITGYIGSGQFREAIDAFKRLLEMGLRPDSFSLVKVLSACAQLGDFTSGEWIDRY 240

Query: 248 ISDCGFVRNVFVATSLLDMYVKCGNMERANLIFNAMSEKDIVSWSTMIQGYAFNGLPKQA 307
           ISDCG VRNVFVATSLLDMYVKCGNMERANLIFNAMSEKDIVSWSTMIQGYAFNGLPKQA
Sbjct: 241 ISDCGLVRNVFVATSLLDMYVKCGNMERANLIFNAMSEKDIVSWSTMIQGYAFNGLPKQA 300

Query: 308 LDLFFQMQSENLKPDCYAMTCV 329
           LDLFFQMQSENLKPDCYAM  V
Sbjct: 301 LDLFFQMQSENLKPDCYAMVGV 322

[Close]

BLAST of Cp4.1LG08g12540 vs. ExPASy TrEMBL
Match: A0A6J1GIB8 (putative pentatricopeptide repeat-containing protein At3g08820 OS=Cucurbita moschata OX=3662 GN=LOC111454160 PE=3 SV=1)

HSP 1 Score: 645 bits (1665), Expect = 1.66e-225
Identity = 316/322 (98.14%), Postives = 319/322 (99.07%), Query Frame = 0


Query: 8   MSILTNPASPIFSKALEIKNFLANGVNCFKQLKHIHCRLLRLHLDQDNYLLNTLLSCGLD 67
           MSILTNPASP+FSKALEIKN+LANGVNCFKQLKHIHCRLLRLHLDQDNYLLNTLLS GLD
Sbjct: 1   MSILTNPASPVFSKALEIKNYLANGVNCFKQLKHIHCRLLRLHLDQDNYLLNTLLSSGLD 60

Query: 68  SGCTNYSKLVFSQAKEPNIFLWNTMIRGLVSKDCFDDAIDVYGSMRREGFLPNNFTFPFV 127
           SGCT+YSKLVFSQAKEPNIFLWNTMIRGLVSKDCFDDAIDVYGSMRREGFLPNNFTFPFV
Sbjct: 61  SGCTDYSKLVFSQAKEPNIFLWNTMIRGLVSKDCFDDAIDVYGSMRREGFLPNNFTFPFV 120

Query: 128 LKACARKLDIRLGVKIHTLVVKAGFDYDVFVKTSLLSLYAKCDNLENALKVFDDMPDKNV 187
           LKACARKLDIRLGVKIHTLVVKAGFDYDVFVKTSLLSLYAKCDNLENALKVFDDMPDKNV
Sbjct: 121 LKACARKLDIRLGVKIHTLVVKAGFDYDVFVKTSLLSLYAKCDNLENALKVFDDMPDKNV 180

Query: 188 VSWTAIITGYIGSGQFREAIDAFKRLLEMGLRPDSFSLVKVLSACAQLGDFTSGEWIDRY 247
           VSWTAIITGYIGSGQFREAIDAFKRLLEMGLRPDSFSLVKVLSACAQLGDFTSGEWIDRY
Sbjct: 181 VSWTAIITGYIGSGQFREAIDAFKRLLEMGLRPDSFSLVKVLSACAQLGDFTSGEWIDRY 240

Query: 248 ISDCGFVRNVFVATSLLDMYVKCGNMERANLIFNAMSEKDIVSWSTMIQGYAFNGLPKQA 307
           ISDCGFVRNVFVATSLLDMYVKCGNMERANLIFNAMSEKDIVSWSTMIQGYAFNGLPKQA
Sbjct: 241 ISDCGFVRNVFVATSLLDMYVKCGNMERANLIFNAMSEKDIVSWSTMIQGYAFNGLPKQA 300

Query: 308 LDLFFQMQSENLKPDCYAMTCV 329
           LDLFFQMQSENLKPDCYAM  V
Sbjct: 301 LDLFFQMQSENLKPDCYAMVGV 322

[Close]

BLAST of Cp4.1LG08g12540 vs. ExPASy TrEMBL
Match: A0A6J1CU24 (putative pentatricopeptide repeat-containing protein At3g08820 OS=Momordica charantia OX=3673 GN=LOC111014228 PE=3 SV=1)

HSP 1 Score: 592 bits (1527), Expect = 1.38e-204
Identity = 289/322 (89.75%), Postives = 303/322 (94.10%), Query Frame = 0


Query: 8   MSILTNPASPIFSKALEIKNFLANGVNCFKQLKHIHCRLLRLHLDQDNYLLNTLLSCGLD 67
           M+ILTNP+SP+FSKALEIKN+L+NGV+CFK LK +H RLLRL LDQDNYLLN +L CGL 
Sbjct: 1   MTILTNPSSPVFSKALEIKNYLSNGVHCFKHLKQVHARLLRLDLDQDNYLLNIILCCGLH 60

Query: 68  SGCTNYSKLVFSQAKEPNIFLWNTMIRGLVSKDCFDDAIDVYGSMRREGFLPNNFTFPFV 127
           S  TNY+KLVFSQAKEPNIFLWNTMIRGLVSKDCFDDAIDVYGSMRR+GFLPNNFTFPFV
Sbjct: 61  SNSTNYTKLVFSQAKEPNIFLWNTMIRGLVSKDCFDDAIDVYGSMRRQGFLPNNFTFPFV 120

Query: 128 LKACARKLDIRLGVKIHTLVVKAGFDYDVFVKTSLLSLYAKCDNLENALKVFDDMPDKNV 187
           LKACARK DIRLGVKIHTLVVKAGFDYDVFVKTSLLSLYAKCDNLENALKVFDD+PDKNV
Sbjct: 121 LKACARKFDIRLGVKIHTLVVKAGFDYDVFVKTSLLSLYAKCDNLENALKVFDDIPDKNV 180

Query: 188 VSWTAIITGYIGSGQFREAIDAFKRLLEMGLRPDSFSLVKVLSACAQLGDFTSGEWIDRY 247
           VSWTAIITGYIGSGQFREAIDAFKRLLEMGLRPDSFSLVKVLSACAQ GDF SGEWIDRY
Sbjct: 181 VSWTAIITGYIGSGQFREAIDAFKRLLEMGLRPDSFSLVKVLSACAQHGDFKSGEWIDRY 240

Query: 248 ISDCGFVRNVFVATSLLDMYVKCGNMERANLIFNAMSEKDIVSWSTMIQGYAFNGLPKQA 307
           I+D G  RNVFVATSLLDMYVKCGNMERANLIF+AM EKDIVSWSTMIQGYAFNGLPKQA
Sbjct: 241 ITDSGLGRNVFVATSLLDMYVKCGNMERANLIFHAMPEKDIVSWSTMIQGYAFNGLPKQA 300

Query: 308 LDLFFQMQSENLKPDCYAMTCV 329
           LDLFFQM S+NLKPDCYAM  V
Sbjct: 301 LDLFFQMHSQNLKPDCYAMVGV 322

[Close]

BLAST of Cp4.1LG08g12540 vs. ExPASy TrEMBL
Match: A0A5D3DMV5 (Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00430 PE=3 SV=1)

HSP 1 Score: 567 bits (1461), Expect = 1.34e-194
Identity = 274/322 (85.09%), Postives = 299/322 (92.86%), Query Frame = 0


Query: 8   MSILTNPASPIFSKALEIKNFLANGVNCFKQLKHIHCRLLRLHLDQDNYLLNTLLSCGLD 67
           M+ILTNP+SP+FSKAL+IKN+L+NGVN FKQLKHIH RLLRLHL QDNYLLN +L CGLD
Sbjct: 1   MTILTNPSSPVFSKALDIKNYLSNGVNFFKQLKHIHARLLRLHLHQDNYLLNMILCCGLD 60

Query: 68  SGCTNYSKLVFSQAKEPNIFLWNTMIRGLVSKDCFDDAIDVYGSMRREGFLPNNFTFPFV 127
            G T+Y+KLVFSQ KEPNIFLWNTMIRGLVSKDCFDDAI +YGSMR  GFLPNNFTFPFV
Sbjct: 61  FGSTDYTKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTFPFV 120

Query: 128 LKACARKLDIRLGVKIHTLVVKAGFDYDVFVKTSLLSLYAKCDNLENALKVFDDMPDKNV 187
           LKACARKLDIRLG+KIHTL+VKAG+D DVFVKTSLLSLY KCDNL++ALKVFDD+PDKNV
Sbjct: 121 LKACARKLDIRLGLKIHTLLVKAGYDCDVFVKTSLLSLYVKCDNLDDALKVFDDIPDKNV 180

Query: 188 VSWTAIITGYIGSGQFREAIDAFKRLLEMGLRPDSFSLVKVLSACAQLGDFTSGEWIDRY 247
           VSWTAIITGYI SG FREAI AF++LLEMGL+PDSFSLVKVL+ACA+LGDFTSGEWIDRY
Sbjct: 181 VSWTAIITGYISSGHFREAIGAFRKLLEMGLKPDSFSLVKVLAACARLGDFTSGEWIDRY 240

Query: 248 ISDCGFVRNVFVATSLLDMYVKCGNMERANLIFNAMSEKDIVSWSTMIQGYAFNGLPKQA 307
           ISD G  RNVFVATSLLDMYVKCGN+ERANLIF+AM EKD+VSWSTMIQGYAFNGLP+QA
Sbjct: 241 ISDNGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDVVSWSTMIQGYAFNGLPQQA 300

Query: 308 LDLFFQMQSENLKPDCYAMTCV 329
           LDLFFQMQSENLKPDCY M  V
Sbjct: 301 LDLFFQMQSENLKPDCYTMVGV 322

[Close]

BLAST of Cp4.1LG08g12540 vs. ExPASy TrEMBL
Match: A0A1S3B518 (putative pentatricopeptide repeat-containing protein At3g08820 OS=Cucumis melo OX=3656 GN=LOC103486253 PE=3 SV=1)

HSP 1 Score: 567 bits (1461), Expect = 1.34e-194
Identity = 274/322 (85.09%), Postives = 299/322 (92.86%), Query Frame = 0


Query: 8   MSILTNPASPIFSKALEIKNFLANGVNCFKQLKHIHCRLLRLHLDQDNYLLNTLLSCGLD 67
           M+ILTNP+SP+FSKAL+IKN+L+NGVN FKQLKHIH RLLRLHL QDNYLLN +L CGLD
Sbjct: 1   MTILTNPSSPVFSKALDIKNYLSNGVNFFKQLKHIHARLLRLHLHQDNYLLNMILCCGLD 60

Query: 68  SGCTNYSKLVFSQAKEPNIFLWNTMIRGLVSKDCFDDAIDVYGSMRREGFLPNNFTFPFV 127
            G T+Y+KLVFSQ KEPNIFLWNTMIRGLVSKDCFDDAI +YGSMR  GFLPNNFTFPFV
Sbjct: 61  FGSTDYTKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTFPFV 120

Query: 128 LKACARKLDIRLGVKIHTLVVKAGFDYDVFVKTSLLSLYAKCDNLENALKVFDDMPDKNV 187
           LKACARKLDIRLG+KIHTL+VKAG+D DVFVKTSLLSLY KCDNL++ALKVFDD+PDKNV
Sbjct: 121 LKACARKLDIRLGLKIHTLLVKAGYDCDVFVKTSLLSLYVKCDNLDDALKVFDDIPDKNV 180

Query: 188 VSWTAIITGYIGSGQFREAIDAFKRLLEMGLRPDSFSLVKVLSACAQLGDFTSGEWIDRY 247
           VSWTAIITGYI SG FREAI AF++LLEMGL+PDSFSLVKVL+ACA+LGDFTSGEWIDRY
Sbjct: 181 VSWTAIITGYISSGHFREAIGAFRKLLEMGLKPDSFSLVKVLAACARLGDFTSGEWIDRY 240

Query: 248 ISDCGFVRNVFVATSLLDMYVKCGNMERANLIFNAMSEKDIVSWSTMIQGYAFNGLPKQA 307
           ISD G  RNVFVATSLLDMYVKCGN+ERANLIF+AM EKD+VSWSTMIQGYAFNGLP+QA
Sbjct: 241 ISDNGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDVVSWSTMIQGYAFNGLPQQA 300

Query: 308 LDLFFQMQSENLKPDCYAMTCV 329
           LDLFFQMQSENLKPDCY M  V
Sbjct: 301 LDLFFQMQSENLKPDCYTMVGV 322

[Close]

BLAST of Cp4.1LG08g12540 vs. TAIR 10
Match: AT3G08820.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 318.2 bits (814), Expect = 1.2e-86
Identity = 155/320 (48.44%), Postives = 223/320 (69.69%), Query Frame = 0


Query: 8   MSILTNPASPIFSKALEIKNFLANGVNC-FKQLKHIHCRLLRLHLDQDNYLLNTLLSCGL 67
           MSI+T P++   SK  +IK  ++  V C    LK IH  L+  HL  D +L+N LL   L
Sbjct: 1   MSIVTVPSAT--SKVQQIKTLIS--VACTVNHLKQIHVSLINHHLHHDTFLVNLLLKRTL 60

Query: 68  DSGCTNYSKLVFSQAKEPNIFLWNTMIRGLVSKDCFDDAIDVYGSMRREGFLPNNFTFPF 127
               T YS L+FS  + PNIFL+N++I G V+   F + +D++ S+R+ G   + FTFP 
Sbjct: 61  FFRQTKYSYLLFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPL 120

Query: 128 VLKACARKLDIRLGVKIHTLVVKAGFDYDVFVKTSLLSLYAKCDNLENALKVFDDMPDKN 187
           VLKAC R    +LG+ +H+LVVK GF++DV   TSLLS+Y+    L +A K+FD++PD++
Sbjct: 121 VLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRS 180

Query: 188 VVSWTAIITGYIGSGQFREAIDAFKRLLEMGLRPDSFSLVKVLSACAQLGDFTSGEWIDR 247
           VV+WTA+ +GY  SG+ REAID FK+++EMG++PDS+ +V+VLSAC  +GD  SGEWI +
Sbjct: 181 VVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVK 240

Query: 248 YISDCGFVRNVFVATSLLDMYVKCGNMERANLIFNAMSEKDIVSWSTMIQGYAFNGLPKQ 307
           Y+ +    +N FV T+L+++Y KCG ME+A  +F++M EKDIV+WSTMIQGYA N  PK+
Sbjct: 241 YMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKE 300

Query: 308 ALDLFFQMQSENLKPDCYAM 327
            ++LF QM  ENLKPD +++
Sbjct: 301 GIELFLQMLQENLKPDQFSI 316

[Close]

BLAST of Cp4.1LG08g12540 vs. TAIR 10
Match: AT1G08070.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 216.9 bits (551), Expect = 3.7e-56
Identity = 118/335 (35.22%), Postives = 182/335 (54.33%), Query Frame = 0


Query: 29  LANGVNCFKQLKHIHCRLLRLHLDQDNYLLNTLLS-CGLDSGCTN--YSKLVFSQAKEPN 88
           L +     + L+ IH +++++ L   NY L+ L+  C L        Y+  VF   +EPN
Sbjct: 39  LLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPN 98

Query: 89  IFLWNTMIRGLVSKDCFDDAIDVYGSMRREGFLPNNFTFPFVLKACARKLDIRLGVKIHT 148
           + +WNTM RG         A+ +Y  M   G LPN++TFPFVLK+CA+    + G +IH 
Sbjct: 99  LLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHG 158

Query: 149 LVVKAGFDYDVFVKTSLLSLYAKCDNL-------------------------------EN 208
            V+K G D D++V TSL+S+Y +   L                               EN
Sbjct: 159 HVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIEN 218

Query: 209 ALKVFDDMPDKNVVSWTAIITGYIGSGQFREAIDAFKRLLEMGLRPDSFSLVKVLSACAQ 268
           A K+FD++P K+VVSW A+I+GY  +G ++EA++ FK +++  +RPD  ++V V+SACAQ
Sbjct: 219 AQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQ 278

Query: 269 LGDFTSGEWIDRYISDCGFVRNVFVATSLLDMYVKCGNMERANLIFNAMSEKDIVSWSTM 328
            G    G  +  +I D GF  N+ +  +L+D+Y KCG +E A  +F  +  KD++SW+T+
Sbjct: 279 SGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTL 338

Query: 329 IQGYAFNGLPKQALDLFFQMQSENLKPDCYAMTCV 330
           I GY    L K+AL LF +M      P+   M  +
Sbjct: 339 IGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSI 373

[Close]

BLAST of Cp4.1LG08g12540 vs. TAIR 10
Match: AT3G12770.1 (mitochondrial editing factor 22 )

HSP 1 Score: 216.5 bits (550), Expect = 4.8e-56
Identity = 107/292 (36.64%), Postives = 172/292 (58.90%), Query Frame = 0


Query: 38  QLKHIHCRLLRLHLDQDNYLLNTLLSCGLDSGCTNYSKLVFSQAKEPNIFLWNTMIRGLV 97
           QLK IH RLL L L    +L+  L+      G   +++ VF     P IF WN +IRG  
Sbjct: 36  QLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYS 95

Query: 98  SKDCFDDAIDVYGSMRREGFLPNNFTFPFVLKACARKLDIRLGVKIHTLVVKAGFDYDVF 157
             + F DA+ +Y +M+     P++FTFP +LKAC+    +++G  +H  V + GFD DVF
Sbjct: 96  RNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVF 155

Query: 158 VKTSLLSLYAKCDNLENALKVFD--DMPDKNVVSWTAIITGYIGSGQFREAIDAFKRLLE 217
           V+  L++LYAKC  L +A  VF+   +P++ +VSWTAI++ Y  +G+  EA++ F ++ +
Sbjct: 156 VQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRK 215

Query: 218 MGLRPDSFSLVKVLSACAQLGDFTSGEWIDRYISDCGFVRNVFVATSLLDMYVKCGNMER 277
           M ++PD  +LV VL+A   L D   G  I   +   G      +  SL  MY KCG +  
Sbjct: 216 MDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVAT 275

Query: 278 ANLIFNAMSEKDIVSWSTMIQGYAFNGLPKQALDLFFQMQSENLKPDCYAMT 328
           A ++F+ M   +++ W+ MI GYA NG  ++A+D+F +M +++++PD  ++T
Sbjct: 276 AKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISIT 327

[Close]

BLAST of Cp4.1LG08g12540 vs. TAIR 10
Match: AT3G26630.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 215.7 bits (548), Expect = 8.2e-56
Identity = 122/345 (35.36%), Postives = 186/345 (53.91%), Query Frame = 0


Query: 13  NPASPIFSKALEIKNFLANGVNCFKQLKHIHCRLLRLHLDQDNYLLNTLLSCGLDSGCTN 72
           N  SP   ++ E   FL    N F QLK IH ++++ +L  D  L+  L+S     G T 
Sbjct: 11  NLLSPPPFRSPEASYFLRTCSN-FSQLKQIHTKIIKHNLTNDQLLVRQLISVSSSFGETQ 70

Query: 73  YSKLVFSQAKEPNIFLWNTMIRGLVSKDCFDDAIDVYGSM---RREGFLPNNFTFPFVLK 132
           Y+ LVF+Q + P+ F WN MIR L       +A+ ++  M    +  F  + FTFPFV+K
Sbjct: 71  YASLVFNQLQSPSTFTWNLMIRSLSVNHKPREALLLFILMMISHQSQF--DKFTFPFVIK 130

Query: 133 ACARKLDIRLGVKIHTLVVKAGFDYDVFVKTSLLSLYAKCDNLENALKVFDDMPD----- 192
           AC     IRLG ++H L +KAGF  DVF + +L+ LY KC   ++  KVFD MP      
Sbjct: 131 ACLASSSIRLGTQVHGLAIKAGFFNDVFFQNTLMDLYFKCGKPDSGRKVFDKMPGRSIVS 190

Query: 193 --------------------------KNVVSWTAIITGYIGSGQFREAIDAFKRLLEMGL 252
                                     +NVVSWTA+IT Y+ + +  EA   F+R+    +
Sbjct: 191 WTTMLYGLVSNSQLDSAEIVFNQMPMRNVVSWTAMITAYVKNRRPDEAFQLFRRMQVDDV 250

Query: 253 RPDSFSLVKVLSACAQLGDFTSGEWIDRYISDCGFVRNVFVATSLLDMYVKCGNMERANL 312
           +P+ F++V +L A  QLG  + G W+  Y    GFV + F+ T+L+DMY KCG+++ A  
Sbjct: 251 KPNEFTIVNLLQASTQLGSLSMGRWVHDYAHKNGFVLDCFLGTALIDMYSKCGSLQDARK 310

Query: 313 IFNAMSEKDIVSWSTMIQGYAFNGLPKQALDLFFQMQSE-NLKPD 323
           +F+ M  K + +W++MI     +G  ++AL LF +M+ E +++PD
Sbjct: 311 VFDVMQGKSLATWNSMITSLGVHGCGEEALSLFEEMEEEASVEPD 352

[Close]

BLAST of Cp4.1LG08g12540 vs. TAIR 10
Match: AT4G21065.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 214.9 bits (546), Expect = 1.4e-55
Identity = 101/253 (39.92%), Postives = 165/253 (65.22%), Query Frame = 0


Query: 72  NYSKLVFSQAKEP-NIFLWNTMIRGLVSKDCFDDAIDVYGSMRREGFL-PNNFTFPFVLK 131
           +Y+  VFS+ ++P N+F+WNT+IRG         A  +Y  MR  G + P+  T+PF++K
Sbjct: 70  SYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIK 129

Query: 132 ACARKLDIRLGVKIHTLVVKAGFDYDVFVKTSLLSLYAKCDNLENALKVFDDMPDKNVVS 191
           A     D+RLG  IH++V+++GF   ++V+ SLL LYA C ++ +A KVFD MP+K++V+
Sbjct: 130 AVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVA 189

Query: 192 WTAIITGYIGSGQFREAIDAFKRLLEMGLRPDSFSLVKVLSACAQLGDFTSGEWIDRYIS 251
           W ++I G+  +G+  EA+  +  +   G++PD F++V +LSACA++G  T G+ +  Y+ 
Sbjct: 190 WNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMI 249

Query: 252 DCGFVRNVFVATSLLDMYVKCGNMERANLIFNAMSEKDIVSWSTMIQGYAFNGLPKQALD 311
             G  RN+  +  LLD+Y +CG +E A  +F+ M +K+ VSW+++I G A NG  K+A++
Sbjct: 250 KVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIE 309

Query: 312 LFFQMQS-ENLKP 322
           LF  M+S E L P
Sbjct: 310 LFKYMESTEGLLP 322

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g12540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SR82	1.6e-85	48.44	Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis th...	[more]
Q9LN01	5.2e-55	35.22	Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop...	[more]
Q9LTV8	6.8e-55	36.64	Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana OX...	[more]
Q38959	1.2e-54	35.36	Pentatricopeptide repeat-containing protein At3g26630, chloroplastic OS=Arabidop...	[more]
A8MQA3	2.0e-54	39.92	Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX...	[more]

BLAST of Cp4.1LG08g12540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023538778.1	4.66e-228	99.38	putative pentatricopeptide repeat-containing protein At3g08820 [Cucurbita pepo s...	[more]
KAG6596322.1	4.36e-226	98.14	putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyros...	[more]
KAG7027873.1	5.53e-226	98.14	putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyros...	[more]
XP_022971519.1	1.76e-225	97.83	putative pentatricopeptide repeat-containing protein At3g08820 [Cucurbita maxima...	[more]
XP_022951275.1	3.43e-225	98.14	putative pentatricopeptide repeat-containing protein At3g08820 [Cucurbita moscha...	[more]

BLAST of Cp4.1LG08g12540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I8T1	8.54e-226	97.83	putative pentatricopeptide repeat-containing protein At3g08820 OS=Cucurbita maxi...	[more]
A0A6J1GIB8	1.66e-225	98.14	putative pentatricopeptide repeat-containing protein At3g08820 OS=Cucurbita mosc...	[more]
A0A6J1CU24	1.38e-204	89.75	putative pentatricopeptide repeat-containing protein At3g08820 OS=Momordica char...	[more]
A0A5D3DMV5	1.34e-194	85.09	Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa...	[more]
A0A1S3B518	1.34e-194	85.09	putative pentatricopeptide repeat-containing protein At3g08820 OS=Cucumis melo O...	[more]

BLAST of Cp4.1LG08g12540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G08820.1	1.2e-86	48.44	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G08070.1	3.7e-56	35.22	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G12770.1	4.8e-56	36.64	mitochondrial editing factor 22	[more]
AT3G26630.1	8.2e-56	35.36	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G21065.1	1.4e-55	39.92	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 247..344 e-value: 1.0E-20 score: 75.8 coord: 21..135 e-value: 6.4E-14 score: 53.7
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 136..246 e-value: 2.4E-21 score: 78.5
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 185..233 e-value: 3.6E-8 score: 33.5 coord: 84..133 e-value: 1.2E-11 score: 44.6 coord: 286..329 e-value: 7.9E-9 score: 35.6
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 188..222 e-value: 3.7E-6 score: 24.8 coord: 88..120 e-value: 4.2E-9 score: 34.0 coord: 289..323 e-value: 2.5E-6 score: 25.3 coord: 160..188 e-value: 0.0032 score: 15.5 coord: 261..289 e-value: 0.0022 score: 16.0
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 186..220 score: 11.684803
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 85..119 score: 11.629997
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 287..321 score: 11.805378
None	No IPR available	PANTHER	PTHR47924:SF28	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED	coord: 21..329
None	No IPR available	PANTHER	PTHR47924	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 21..329

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g12540.1	Cp4.1LG08g12540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding