Cp4.1LG08g12210 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG08g12210
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	DUF962 domain-containing protein
Location	Cp4.1LG08: 8824473 .. 8824811 (-)
RNA-Seq Expression	Cp4.1LG08g12210
Synteny	Cp4.1LG08g12210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTTCAGAAGTTTGGATGAGTTCTGGGTTTTCTATATGAACCAGCACTCAAAACCCTCGACGAGACGATGGCACTTTATTGGAACTCTGTCTTCTATCTTCTTCTTTCTTTGCTCTTTACTGTTTAGCTGGTGGTTCCTGTTCTTTGTGCCTTTGACTGGATATGGATTCGCGTGGTACAGCCATTTCTTCGTCGAGGAAAATGTTCCTGCTTCCTTCGGTCATCCATTTTGGTCTCTTCTTTGTGATTTCAAGATGTTTGGATTGATGCTTACTGGGAACATGGACAGGGAAATCAAGAGGCTGGGGAAAAGACCTGTGTTGCAGGCGTTCTAA

mRNA sequence

ATGAATTTCAGAAGTTTGGATGAGTTCTGGGTTTTCTATATGAACCAGCACTCAAAACCCTCGACGAGACGATGGCACTTTATTGGAACTCTGTCTTCTATCTTCTTCTTTCTTTGCTCTTTACTGTTTAGCTGGTGGTTCCTGTTCTTTGTGCCTTTGACTGGATATGGATTCGCGTGGTACAGCCATTTCTTCGTCGAGGAAAATGTTCCTGCTTCCTTCGGTCATCCATTTTGGTCTCTTCTTTGTGATTTCAAGATGTTTGGATTGATGCTTACTGGGAACATGGACAGGGAAATCAAGAGGCTGGGGAAAAGACCTGTGTTGCAGGCGTTCTAA

Coding sequence (CDS)

ATGAATTTCAGAAGTTTGGATGAGTTCTGGGTTTTCTATATGAACCAGCACTCAAAACCCTCGACGAGACGATGGCACTTTATTGGAACTCTGTCTTCTATCTTCTTCTTTCTTTGCTCTTTACTGTTTAGCTGGTGGTTCCTGTTCTTTGTGCCTTTGACTGGATATGGATTCGCGTGGTACAGCCATTTCTTCGTCGAGGAAAATGTTCCTGCTTCCTTCGGTCATCCATTTTGGTCTCTTCTTTGTGATTTCAAGATGTTTGGATTGATGCTTACTGGGAACATGGACAGGGAAATCAAGAGGCTGGGGAAAAGACCTGTGTTGCAGGCGTTCTAA

Protein sequence

MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAWYSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF

Homology

[Close]

BLAST of Cp4.1LG08g12210 vs. NCBI nr
Match: XP_022946132.1 (uncharacterized protein LOC111450283 [Cucurbita moschata] >XP_022946207.1 uncharacterized protein LOC111450283 [Cucurbita moschata] >XP_022971548.1 uncharacterized protein LOC111470232 [Cucurbita maxima] >XP_022971549.1 uncharacterized protein LOC111470232 [Cucurbita maxima] >XP_022971550.1 uncharacterized protein LOC111470232 [Cucurbita maxima] >XP_023538975.1 uncharacterized protein LOC111799748 [Cucurbita pepo subsp. pepo] >XP_023538976.1 uncharacterized protein LOC111799748 [Cucurbita pepo subsp. pepo] >XP_038903172.1 uncharacterized protein LOC120089838 [Benincasa hispida] >KAG7027913.1 hypothetical protein SDJN02_09092, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 241 bits (615), Expect = 1.64e-80
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAW 60
           MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAW
Sbjct: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAW 60

Query: 61  YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 112
           YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF
Sbjct: 61  YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 112

[Close]

BLAST of Cp4.1LG08g12210 vs. NCBI nr
Match: XP_022145672.1 (uncharacterized protein LOC111015066 [Momordica charantia] >XP_022145673.1 uncharacterized protein LOC111015066 [Momordica charantia])

HSP 1 Score: 237 bits (605), Expect = 5.50e-79
Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAW 60
           MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLS+IFFFLCSLLFSWWFLFFVPL GYGFAW
Sbjct: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSAIFFFLCSLLFSWWFLFFVPLFGYGFAW 60

Query: 61  YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 112
           YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF
Sbjct: 61  YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 112

[Close]

BLAST of Cp4.1LG08g12210 vs. NCBI nr
Match: XP_008442469.1 (PREDICTED: uncharacterized protein LOC103486326 [Cucumis melo] >XP_016899716.1 PREDICTED: uncharacterized protein LOC103486326 [Cucumis melo] >KAA0044148.1 DUF962 domain-containing protein [Cucumis melo var. makuwa] >TYK24989.1 DUF962 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 236 bits (603), Expect = 1.11e-78
Identity = 109/112 (97.32%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAW 60
           MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLS+IFFFLCSLLFSWWFLF VPLTGYGFAW
Sbjct: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSAIFFFLCSLLFSWWFLFLVPLTGYGFAW 60

Query: 61  YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 112
           YSHFFVEENVPA+FGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF
Sbjct: 61  YSHFFVEENVPATFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 112

[Close]

BLAST of Cp4.1LG08g12210 vs. NCBI nr
Match: XP_004137736.1 (uncharacterized protein LOC101216787 [Cucumis sativus] >KGN58796.1 hypothetical protein Csa_001372 [Cucumis sativus])

HSP 1 Score: 234 bits (597), Expect = 9.15e-78
Identity = 107/112 (95.54%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAW 60
           MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLS+IFFFLCSLLFSWWFLFFVPLTGYGFAW
Sbjct: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSAIFFFLCSLLFSWWFLFFVPLTGYGFAW 60

Query: 61  YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 112
           YSHFF+EENVPA+F HPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQ F
Sbjct: 61  YSHFFIEENVPATFAHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQIF 112

[Close]

BLAST of Cp4.1LG08g12210 vs. NCBI nr
Match: PQM42170.1 (uncharacterized protein Pyn_13924 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 218 bits (556), Expect = 1.65e-71
Identity = 100/112 (89.29%), Postives = 104/112 (92.86%), Query Frame = 0


Query: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAW 60
           MNFRSL+EFWVFYMNQHSKPSTRRWHF+GTL SIFFFLCSLLF+WW LF VPL GYG AW
Sbjct: 1   MNFRSLEEFWVFYMNQHSKPSTRRWHFVGTLVSIFFFLCSLLFNWWLLFLVPLAGYGCAW 60

Query: 61  YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 112
           YSHFFVE NVPA+FGHPFWSLLCDFKMF LMLTGNMDREIKRLGKRPVLQ F
Sbjct: 61  YSHFFVEGNVPATFGHPFWSLLCDFKMFALMLTGNMDREIKRLGKRPVLQGF 112

[Close]

BLAST of Cp4.1LG08g12210 vs. ExPASy TrEMBL
Match: A0A6J1I767 (uncharacterized protein LOC111470232 OS=Cucurbita maxima OX=3661 GN=LOC111470232 PE=4 SV=1)

HSP 1 Score: 241 bits (615), Expect = 7.94e-81
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAW 60
           MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAW
Sbjct: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAW 60

Query: 61  YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 112
           YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF
Sbjct: 61  YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 112

[Close]

BLAST of Cp4.1LG08g12210 vs. ExPASy TrEMBL
Match: A0A6J1G2W8 (uncharacterized protein LOC111450283 OS=Cucurbita moschata OX=3662 GN=LOC111450283 PE=4 SV=1)

HSP 1 Score: 241 bits (615), Expect = 7.94e-81
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAW 60
           MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAW
Sbjct: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAW 60

Query: 61  YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 112
           YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF
Sbjct: 61  YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 112

[Close]

BLAST of Cp4.1LG08g12210 vs. ExPASy TrEMBL
Match: A0A6J1CWL4 (uncharacterized protein LOC111015066 OS=Momordica charantia OX=3673 GN=LOC111015066 PE=4 SV=1)

HSP 1 Score: 237 bits (605), Expect = 2.66e-79
Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAW 60
           MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLS+IFFFLCSLLFSWWFLFFVPL GYGFAW
Sbjct: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSAIFFFLCSLLFSWWFLFFVPLFGYGFAW 60

Query: 61  YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 112
           YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF
Sbjct: 61  YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 112

[Close]

BLAST of Cp4.1LG08g12210 vs. ExPASy TrEMBL
Match: A0A1S4DUQ8 (uncharacterized protein LOC103486326 OS=Cucumis melo OX=3656 GN=LOC103486326 PE=4 SV=1)

HSP 1 Score: 236 bits (603), Expect = 5.38e-79
Identity = 109/112 (97.32%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAW 60
           MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLS+IFFFLCSLLFSWWFLF VPLTGYGFAW
Sbjct: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSAIFFFLCSLLFSWWFLFLVPLTGYGFAW 60

Query: 61  YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 112
           YSHFFVEENVPA+FGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF
Sbjct: 61  YSHFFVEENVPATFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 112

[Close]

BLAST of Cp4.1LG08g12210 vs. ExPASy TrEMBL
Match: A0A5A7TMP5 (DUF962 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001060 PE=4 SV=1)

HSP 1 Score: 236 bits (603), Expect = 5.38e-79
Identity = 109/112 (97.32%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAW 60
           MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLS+IFFFLCSLLFSWWFLF VPLTGYGFAW
Sbjct: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSAIFFFLCSLLFSWWFLFLVPLTGYGFAW 60

Query: 61  YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 112
           YSHFFVEENVPA+FGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF
Sbjct: 61  YSHFFVEENVPATFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 112

[Close]

BLAST of Cp4.1LG08g12210 vs. TAIR 10
Match: AT3G09085.1 (Protein of unknown function (DUF962) )

HSP 1 Score: 180.3 bits (456), Expect = 8.8e-46
Identity = 82/110 (74.55%), Postives = 92/110 (83.64%), Query Frame = 0


Query: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAW 60
           MNFRS +EFW FYM QHS PSTRR HFIG ++SI   +CS+L +WWFL  VPL GYGFAW
Sbjct: 1   MNFRSFEEFWPFYMMQHSNPSTRRLHFIGIIASIVALICSILINWWFLALVPLLGYGFAW 60

Query: 61  YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQ 111
           YSHFFVE NVPASFGHP WS LCD KMF LMLTG+M+RE+KRLGKRP+LQ
Sbjct: 61  YSHFFVEGNVPASFGHPLWSFLCDLKMFSLMLTGSMEREMKRLGKRPLLQ 110

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g12210 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG08g12210 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946132.1	1.64e-80	100.00	uncharacterized protein LOC111450283 [Cucurbita moschata] >XP_022946207.1 unchar...	[more]
XP_022145672.1	5.50e-79	98.21	uncharacterized protein LOC111015066 [Momordica charantia] >XP_022145673.1 uncha...	[more]
XP_008442469.1	1.11e-78	97.32	PREDICTED: uncharacterized protein LOC103486326 [Cucumis melo] >XP_016899716.1 P...	[more]
XP_004137736.1	9.15e-78	95.54	uncharacterized protein LOC101216787 [Cucumis sativus] >KGN58796.1 hypothetical ...	[more]
PQM42170.1	1.65e-71	89.29	uncharacterized protein Pyn_13924 [Prunus yedoensis var. nudiflora]	[more]

BLAST of Cp4.1LG08g12210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I767	7.94e-81	100.00	uncharacterized protein LOC111470232 OS=Cucurbita maxima OX=3661 GN=LOC111470232...	[more]
A0A6J1G2W8	7.94e-81	100.00	uncharacterized protein LOC111450283 OS=Cucurbita moschata OX=3662 GN=LOC1114502...	[more]
A0A6J1CWL4	2.66e-79	98.21	uncharacterized protein LOC111015066 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A1S4DUQ8	5.38e-79	97.32	uncharacterized protein LOC103486326 OS=Cucumis melo OX=3656 GN=LOC103486326 PE=...	[more]
A0A5A7TMP5	5.38e-79	97.32	DUF962 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]

BLAST of Cp4.1LG08g12210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09085.1	8.8e-46	74.55	Protein of unknown function (DUF962)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009305	2-hydroxy-palmitic acid dioxygenase Mpo1-like	PFAM	PF06127	DUF962	coord: 3..96 e-value: 3.4E-28 score: 97.6
None	No IPR available	PANTHER	PTHR34205	TRANSMEMBRANE PROTEIN	coord: 3..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g12210.1	Cp4.1LG08g12210.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane