Cp4.1LG08g08710 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG08g08710
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	nucleolar protein 12
Location	Cp4.1LG08: 6815561 .. 6819330 (-)
RNA-Seq Expression	Cp4.1LG08g08710
Synteny	Cp4.1LG08g08710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTCCCAATCCGACACGGAATAAGCCCTAGGGCTCCAAAATTCATCTTCTCCAATGTCCATTGTTCGCCGCAATTACTTCAACCTGTAAATTCACAGAATCTGCAGAAAACCAGCCCAGAAGAAGAGTAATGGGGAAGAAGAAAACCAACGGCCCCAAAAGTTCCTCCGAAGAAGTCGCCATTGGTTCTGCTTCCTCCAGCGTTTTCGAGACTCTGTTCGGCAACGTTGGTGCTGAAAGTGATGGCGTTTCTATCTTCTCCACTGAGAACCCTTTTCGTAGGAAAGATACGAGTTCAACTCCTGTGGCGGCAGTTGCTGAAAAATCTCCCAGTGGCGGCGCTGATGGTCATACTATCGATGATGTAAAGAGTAGGGAGAAGAGCAAGGAGAAACGGGTTGGAATGGATTTGGATTCTGCTGAGAATGGTGTTAAAAGTTCGTCGGAAGTCAAGAAATCGAAGAGGAAGGAGAAGTCTCGGGACCGGGAATTGGATAATGAAGTTATCGAGAAGGATGATGAAGAAAGGGGTTTTCAATCCCGAGGCGTAGTGAAGAAGAACAAAAGGAACGGTGCGGAAATCGGTTCTGAATTTAGCGGCGAATTGAAGATAGACGAACAAAGGAGTGACAGTAAACTCGGTGTGGATGTGAAGTTGACGAAAGAGAAGAAGAAGAGGAAGAGAGACGAACTGGAGAGAGAGTATGAAGCGAAGAAGTATGGTGCATCAGAAGTAGCTGAAGATGAAGTGGAAGGTTCAGGGGGCACTGTTGTTGGGAAGAAGAGGAAAGCGATGGACGATTTTTCTGAGATGTTGGTAACGAAGGAGGGATTTGATGATGAAAGCAAGCTTTTGAGAACTGTTTTTGTTGGGAATTTGCCATTGAAAGTGAAGAAAAAAGCTTTAGGCAAGGAGTTTAGCCAATTTGGAGAAATAGAATCTGTTAGGATCCGTTCTGTGCCACTTGCAAATGTAAGCATTGTTTTCTATTTGTTCATTATCTTGAATTTCGAGTTCGTGGGGTTTTGTTTTTCTCAATTTATCGATCTTCAAACTTAAGAATTTTGTACTTTTTCTCTGATCAGAGCAAAAAACCTAGGAAGGGAGCAATTCTTTCAAAGAAAGTCAATGAAGATGCGGACAGGTAACGATTTTATATCATAATGTGATGTTATTGAATTTGATAAATGTCGCTTAATTGTTTCGATATTGAATCGTTGTTCACTTATAATCAAAATTAGAGAGAGGGATCGTGGTTTTAGGATGATCTTACTTGATCAGGGTTATACTATATGGTTGGTCACTTCAGTTGGAAGCCTAAGCCCAGAAGGTACAAACGAAGTGACGGGCCCTTTTAGAGTTTGAGAGATAGGGTAGGGGGCGGCTTGATTGTGATAGTGATAGTAATTTCGAACATCTCTCCCCTTTTCTCTTAGCGTGCACAGTTTGCTTGCATGCCGCTTTGACTCCTAGAGTTCTTTAAGAGATCATGATTTTAGGAAAGGTCCTTAGGAGAGAATTACTGGATATGGTTGCTTATTCTTATTTTAAGACATTATATACCGTTTTTAGTGATGAAAATGAATGATTTGCAGTTCTCATGCATATGTTGTTTTCAAAACGGAGGAATCAGCACAGGCTTCTCTGTCCCATAACATGGCTGTGGTATAGTTCTTACTCTCTTTTCCTCTTCTTCTTAGCTTTTCGAAGTCGAAACTTGTAGCTTTGGCTATTTCCATTCATGATCTTTATATATGTGAATTTAGTTTGCAGGAAATCATATACGTGTTGATAGGGCATGCCCGCCTCGTAAAAAGTTGAAAGTAGGAAGTTCCCCAATCTATGAACCCAAGAGAACTGTTTTTGTGGGTAACCTTCCATTTGATGTAAAGGTAACCTTTTCTATACGCAAGTTTTCTTTCCTCTTCCCTTCCTTGATGCTAAGTTATGTAAAGTTGGTTTATGGTTGTTTTATACATCTACATTTTCAGGATGAAGAATTGTATCAACTATTTTGCGGAATCGAGAATGTGGGATCTAATGTCGAAGCTGTTCGGGTCATCAGAGATCCTAATGTGAACATAGGGAAGGGTTTTGCGTATGTCTTCTTTAAAACAAAGGTACGATCGGCTTTTTTGATTTTAATGTTCATTCATTTAGAGAGATCTGTAAGCTCATTGGTTTTCTCTCATTTTCTTCACTTTTTACTAAATGACGAGAAAACACTTTTTACTGTTTTGTTAGTTCAATTAGTTTGATTGATCTAATAATAATATATGGTTTAAATTACATGTTTGCGCACACACGAGTATGCTGATAGGTGTATCGACATCGTGTGTGCGCACTTTCCTGTCTGTCTGGATCTAGTAGACGAGGTTTTAAATTCTGTTCTTTTGGTTGAGGAGCTTGGTATTTTTATTATGCTTTTTTATAACCGGGTACCTGAGGCCTCATCTCTTGCATCATGCTCACGGTGGATTCCGACTGGGCTTCATCCACTTTACGTCCCCACTCTTTGCATCATGTTCATGAATCATGACTAACTTCCACTAGTATTAAGGATGCGATCCTATACTGGTTGGGGAGGAGAACGAAGCATTCCTTATAAAGGTGTGGAACATTTCCCTAATAGACGCGTTTTAAAACTGTGAGGCTGACAGTGATGTATAACGGGCCGAAGCAAACAATATTTGTTAGCAGTGGACTTGGGCTGCTACACTGAAAGTTCAGCTCAACAATGGCTGAGTTATTGAGCTCTAACCTTCAGATTTAGTTAAATTAAAACCTCGTTGGTATTTCTGATCATCTCGAACCCTGGCTACCGAAACACTTGGGGAGCAGTTAGTAAATACATAGGCAAAAGCTAGATATCTGTTAACTTATTTTTCTCTCTATCTTCCCTGATTGTTTTTGTCACCTCTAGTCTTGAAGACAACTGCATGTTTTCCCATTGGTTTACATCTTTATCTTTCAATTTCAATCTAAGAACAACGCATTGCTTCTATGTCTGTGCAGGAAGCAGCAAATTCAGTAATTAACAATCAAAAACTACAGTTGCGTGATCGAGCACTGAGGCTCTTTCATGCCAAACCAAACTTGACATCGACCCCGCTCAAGAAACGTAATAACCCATCTACTGAAGTCGATCGCTCAGCAAAGAAAAGGGCTGTGGATTCAGGTTTAAGGACACCAGACAGCAGCAAGAGGGCAACCCCAAAAGCTACGGTTGCATCCTACCAGGGCCTGCGTGCGAGCAAACCCGGCTCCCAGAAGAAGAACCAAGCGAAAGGCAGTGGCACGAAATGGACTAAATCGCATTCCAACAGTAAGGAGAAGCGAGTAGATTACAAGAGGAGAAGACCGGAGGATTTCCCGGAGAGGACGAGTGAAAGGAAGGGGAAAAGACCGGAGAAGATGAGTGAAAGGAAGGGGAAGAGACCAGCAGTTGCCAACCGAAAGGCTGTGGCAAATGCATCGAGAAATGGCGTTGCAGCACCGAAACAAGGCGGGGCTAAACGCAAGTCCGATAGCCGAACGCCAGAGAGCTCTCACAGAAACAAAAGAGTCAAAAGGTTTAGATAGATAGGAAACACAGGAAGGAAGAAGTTGATGGTGTGGAATGAACTGAATACTCTTAGCGTTCTTTGTATTCTTTTATGTGGTTTACCAACTCACTTTTGAATTAAGCAAAAGTTAATATTAATCAGGTTTTATATTATTATATGTTAAGAAAACATCAAATTAAAATAATAACATAAAAAATGGTTGG

mRNA sequence

CATTCCCAATCCGACACGGAATAAGCCCTAGGGCTCCAAAATTCATCTTCTCCAATGTCCATTGTTCGCCGCAATTACTTCAACCTGTAAATTCACAGAATCTGCAGAAAACCAGCCCAGAAGAAGAGTAATGGGGAAGAAGAAAACCAACGGCCCCAAAAGTTCCTCCGAAGAAGTCGCCATTGGTTCTGCTTCCTCCAGCGTTTTCGAGACTCTGTTCGGCAACGTTGGTGCTGAAAGTGATGGCGTTTCTATCTTCTCCACTGAGAACCCTTTTCGTAGGAAAGATACGAGTTCAACTCCTGTGGCGGCAGTTGCTGAAAAATCTCCCAGTGGCGGCGCTGATGGTCATACTATCGATGATGTAAAGAGTAGGGAGAAGAGCAAGGAGAAACGGGTTGGAATGGATTTGGATTCTGCTGAGAATGGTGTTAAAAGTTCGTCGGAAGTCAAGAAATCGAAGAGGAAGGAGAAGTCTCGGGACCGGGAATTGGATAATGAAGTTATCGAGAAGGATGATGAAGAAAGGGGTTTTCAATCCCGAGGCGTAGTGAAGAAGAACAAAAGGAACGGTGCGGAAATCGGTTCTGAATTTAGCGGCGAATTGAAGATAGACGAACAAAGGAGTGACAGTAAACTCGGTGTGGATGTGAAGTTGACGAAAGAGAAGAAGAAGAGGAAGAGAGACGAACTGGAGAGAGAGTATGAAGCGAAGAAGTATGGTGCATCAGAAGTAGCTGAAGATGAAGTGGAAGGTTCAGGGGGCACTGTTGTTGGGAAGAAGAGGAAAGCGATGGACGATTTTTCTGAGATGTTGGTAACGAAGGAGGGATTTGATGATGAAAGCAAGCTTTTGAGAACTGTTTTTGTTGGGAATTTGCCATTGAAAGTGAAGAAAAAAGCTTTAGGCAAGGAGTTTAGCCAATTTGGAGAAATAGAATCTGTTAGGATCCGTTCTGTGCCACTTGCAAATAGCAAAAAACCTAGGAAGGGAGCAATTCTTTCAAAGAAAGTCAATGAAGATGCGGACAGTTCTCATGCATATGTTGTTTTCAAAACGGAGGAATCAGCACAGGCTTCTCTGTCCCATAACATGGCTGTGTTTGCAGGAAATCATATACGTGTTGATAGGGCATGCCCGCCTCGTAAAAAGTTGAAAGTAGGAAGTTCCCCAATCTATGAACCCAAGAGAACTGTTTTTGTGGGTAACCTTCCATTTGATGTAAAGGATGAAGAATTGTATCAACTATTTTGCGGAATCGAGAATGTGGGATCTAATGTCGAAGCTGTTCGGGTCATCAGAGATCCTAATGTGAACATAGGGAAGGGTTTTGCGTATGTCTTCTTTAAAACAAAGGAAGCAGCAAATTCAGTAATTAACAATCAAAAACTACAGTTGCGTGATCGAGCACTGAGGCTCTTTCATGCCAAACCAAACTTGACATCGACCCCGCTCAAGAAACGTAATAACCCATCTACTGAAGTCGATCGCTCAGCAAAGAAAAGGGCTGTGGATTCAGGTTTAAGGACACCAGACAGCAGCAAGAGGGCAACCCCAAAAGCTACGGTTGCATCCTACCAGGGCCTGCGTGCGAGCAAACCCGGCTCCCAGAAGAAGAACCAAGCGAAAGGCAGTGGCACGAAATGGACTAAATCGCATTCCAACAGTAAGGAGAAGCGAGTAGATTACAAGAGGAGAAGACCGGAGGATTTCCCGGAGAGGACGAGTGAAAGGAAGGGGAAAAGACCGGAGAAGATGAGTGAAAGGAAGGGGAAGAGACCAGCAGTTGCCAACCGAAAGGCTGTGGCAAATGCATCGAGAAATGGCGTTGCAGCACCGAAACAAGGCGGGGCTAAACGCAAGTCCGATAGCCGAACGCCAGAGAGCTCTCACAGAAACAAAAGAGTCAAAAGGTTTAGATAGATAGGAAACACAGGAAGGAAGAAGTTGATGGTGTGGAATGAACTGAATACTCTTAGCGTTCTTTGTATTCTTTTATGTGGTTTACCAACTCACTTTTGAATTAAGCAAAAGTTAATATTAATCAGGTTTTATATTATTATATGTTAAGAAAACATCAAATTAAAATAATAACATAAAAAATGGTTGG

Coding sequence (CDS)

ATGGGGAAGAAGAAAACCAACGGCCCCAAAAGTTCCTCCGAAGAAGTCGCCATTGGTTCTGCTTCCTCCAGCGTTTTCGAGACTCTGTTCGGCAACGTTGGTGCTGAAAGTGATGGCGTTTCTATCTTCTCCACTGAGAACCCTTTTCGTAGGAAAGATACGAGTTCAACTCCTGTGGCGGCAGTTGCTGAAAAATCTCCCAGTGGCGGCGCTGATGGTCATACTATCGATGATGTAAAGAGTAGGGAGAAGAGCAAGGAGAAACGGGTTGGAATGGATTTGGATTCTGCTGAGAATGGTGTTAAAAGTTCGTCGGAAGTCAAGAAATCGAAGAGGAAGGAGAAGTCTCGGGACCGGGAATTGGATAATGAAGTTATCGAGAAGGATGATGAAGAAAGGGGTTTTCAATCCCGAGGCGTAGTGAAGAAGAACAAAAGGAACGGTGCGGAAATCGGTTCTGAATTTAGCGGCGAATTGAAGATAGACGAACAAAGGAGTGACAGTAAACTCGGTGTGGATGTGAAGTTGACGAAAGAGAAGAAGAAGAGGAAGAGAGACGAACTGGAGAGAGAGTATGAAGCGAAGAAGTATGGTGCATCAGAAGTAGCTGAAGATGAAGTGGAAGGTTCAGGGGGCACTGTTGTTGGGAAGAAGAGGAAAGCGATGGACGATTTTTCTGAGATGTTGGTAACGAAGGAGGGATTTGATGATGAAAGCAAGCTTTTGAGAACTGTTTTTGTTGGGAATTTGCCATTGAAAGTGAAGAAAAAAGCTTTAGGCAAGGAGTTTAGCCAATTTGGAGAAATAGAATCTGTTAGGATCCGTTCTGTGCCACTTGCAAATAGCAAAAAACCTAGGAAGGGAGCAATTCTTTCAAAGAAAGTCAATGAAGATGCGGACAGTTCTCATGCATATGTTGTTTTCAAAACGGAGGAATCAGCACAGGCTTCTCTGTCCCATAACATGGCTGTGTTTGCAGGAAATCATATACGTGTTGATAGGGCATGCCCGCCTCGTAAAAAGTTGAAAGTAGGAAGTTCCCCAATCTATGAACCCAAGAGAACTGTTTTTGTGGGTAACCTTCCATTTGATGTAAAGGATGAAGAATTGTATCAACTATTTTGCGGAATCGAGAATGTGGGATCTAATGTCGAAGCTGTTCGGGTCATCAGAGATCCTAATGTGAACATAGGGAAGGGTTTTGCGTATGTCTTCTTTAAAACAAAGGAAGCAGCAAATTCAGTAATTAACAATCAAAAACTACAGTTGCGTGATCGAGCACTGAGGCTCTTTCATGCCAAACCAAACTTGACATCGACCCCGCTCAAGAAACGTAATAACCCATCTACTGAAGTCGATCGCTCAGCAAAGAAAAGGGCTGTGGATTCAGGTTTAAGGACACCAGACAGCAGCAAGAGGGCAACCCCAAAAGCTACGGTTGCATCCTACCAGGGCCTGCGTGCGAGCAAACCCGGCTCCCAGAAGAAGAACCAAGCGAAAGGCAGTGGCACGAAATGGACTAAATCGCATTCCAACAGTAAGGAGAAGCGAGTAGATTACAAGAGGAGAAGACCGGAGGATTTCCCGGAGAGGACGAGTGAAAGGAAGGGGAAAAGACCGGAGAAGATGAGTGAAAGGAAGGGGAAGAGACCAGCAGTTGCCAACCGAAAGGCTGTGGCAAATGCATCGAGAAATGGCGTTGCAGCACCGAAACAAGGCGGGGCTAAACGCAAGTCCGATAGCCGAACGCCAGAGAGCTCTCACAGAAACAAAAGAGTCAAAAGGTTTAGATAG

Protein sequence

MGKKKTNGPKSSSEEVAIGSASSSVFETLFGNVGAESDGVSIFSTENPFRRKDTSSTPVAAVAEKSPSGGADGHTIDDVKSREKSKEKRVGMDLDSAENGVKSSSEVKKSKRKEKSRDRELDNEVIEKDDEERGFQSRGVVKKNKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKEKKKRKRDELEREYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLVTKEGFDDESKLLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDADSSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPPRKKLKVGSSPIYEPKRTVFVGNLPFDVKDEELYQLFCGIENVGSNVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINNQKLQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRSAKKRAVDSGLRTPDSSKRATPKATVASYQGLRASKPGSQKKNQAKGSGTKWTKSHSNSKEKRVDYKRRRPEDFPERTSERKGKRPEKMSERKGKRPAVANRKAVANASRNGVAAPKQGGAKRKSDSRTPESSHRNKRVKRFR

Homology

[Close]

BLAST of Cp4.1LG08g08710 vs. ExPASy Swiss-Prot
Match: Q5M9F1 (RNA-binding protein 34 OS=Rattus norvegicus OX=10116 GN=Rbm34 PE=1 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 3.9e-28
Identity = 96/269 (35.69%), Postives = 138/269 (51.30%), Query Frame = 0


Query: 236 DDESKLLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKV 295
           ++  K  RTVFVGNLP+   KK L   F ++G++ESVR RSV  A     +K A + +K 
Sbjct: 176 EERLKNERTVFVGNLPVTCNKKKLKSFFKEYGQVESVRFRSVMPAEGTLSKKLAAIKRKF 235

Query: 296 NEDADSSHAYVVFKTEESAQASLSHNMAVFA-GNHIRVDRACPPRKKLKVGSSPIYEPKR 355
           + D  S +AYVVFK E +A  +L  N A  A G  IRVD A          S      KR
Sbjct: 236 HPDQKSINAYVVFKEERAAAKALQRNGAQIAEGFRIRVDLA----------SETASRDKR 295

Query: 356 TVFVGNLPFDVKDEELYQLF--CGIENVGSNVEAVRVIRDPNVNIGKGFAYVFFKTKEAA 415
           +VFVGNLP+ V +  L + F  CG      ++ AVR++R+P   +G+GF YV F+  +A 
Sbjct: 296 SVFVGNLPYRVDESALEEHFLDCG------SIVAVRIVRNPLTGVGRGFGYVLFENTDAV 355

Query: 416 NSVINNQKLQLRDRALRLFHAKPNLTSTPLKKRN-NPSTEVDRSAKKRAVDSGLRTPDSS 475
           +  +     +L  R LR+     ++    LK++N NPS + D S  K+ ++    T    
Sbjct: 356 HLALKLNNSELMGRKLRVMR---SVNKEKLKQQNSNPSVKKDGSKSKQRLNF---TSKEG 415

Query: 476 KRATPKATVASYQGLRASKPGSQKKNQAK 501
           K  +  A +     L   K G +KK Q K
Sbjct: 416 KSHSKNAFIGEKAVLMKKKKGQKKKGQTK 422

[Close]

BLAST of Cp4.1LG08g08710 vs. ExPASy Swiss-Prot
Match: O13741 (Nucleolar protein 12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=nop12 PE=1 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 9.0e-25
Identity = 119/397 (29.97%), Postives = 195/397 (49.12%), Query Frame = 0


Query: 166 SDSKLGVDVKLTKEKKKRK----RDELEREY----------EAKKYGASEVAEDEVEGSG 225
           SD+K   ++K   +KKK+K     D++E +Y          E  K  A  + ++E +   
Sbjct: 72  SDTKEVQNIKPKSKKKKKKLNDSSDDIEGKYFEELLAEEDEEKDKDSAGLINDEEDKSPA 131

Query: 226 GTVVGKKRKAMDDF-SEMLVTKEGFDDESKLLRTVFVGNLPLKV-----KKKALGKEFSQ 285
              V ++R + +D  SE  V ++  ++  K  +TVFV NLP +V       K L K F Q
Sbjct: 132 KQSVLEERTSQEDVKSEREVAEKLANELEKSDKTVFVNNLPARVVTNKGDYKDLTKHFRQ 191

Query: 286 FGEIESVRIRSVPLANSKKPRKGAILSKKVNEDADSSHAYVVFKTEESAQASLSHNMAVF 345
           FG ++S+R RS+  + +  PRK A   KK + + D+ +AY+VF+   SA+++LS N  +F
Sbjct: 192 FGAVDSIRFRSLAFSEA-IPRKVAFFEKKFHSERDTVNAYIVFRDSSSARSALSLNGTMF 251

Query: 346 AGNHIRVDRACPPRKKLKVGSSPIYEPKRTVFVGNLPFDVKDEELYQLF--CGIENVGSN 405
              H+RVD    P  +         + KR VFVGNL F+ ++E L++ F  CG      +
Sbjct: 252 MDRHLRVDSVSHPMPQ---------DTKRCVFVGNLAFEAEEEPLWRYFGDCG------S 311

Query: 406 VEAVRVIRDPNVNIGKGFAYVFFK-TKEAANSVINNQKLQLRDRALRLFHAKPNLTSTPL 465
           ++ VR++RDP  N+GKGFAY+ FK T     +++ N+K     R LR+  AK   T    
Sbjct: 312 IDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLNEKKMPEGRTLRIMRAKS--TKPKS 371

Query: 466 KKRNNPSTEVDRSAKKRAVDSGLRTPDSSKRATPKATVASYQGLRASKPGSQKKNQAKGS 525
             R+    E  R+ + RA     +    +  A  +  +A  +G RA KPG     +    
Sbjct: 372 ITRSKRGDEKTRTLQGRA----RKLIGKAGNALLQQELA-LEGHRA-KPGENPLAK---- 431

Query: 526 GTKWTKSHSNSKEKRVDYKRRRPEDFPERTSERKGKR 540
                K +   KE+   ++ ++ E   ++     GK+
Sbjct: 432 ----KKVNKKRKERAAQWRNKKAESVGKKQKTAAGKK 436

[Close]

BLAST of Cp4.1LG08g08710 vs. ExPASy Swiss-Prot
Match: Q5AHI7 (Nucleolar protein 12 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=NOP12 PE=3 SV=2)

HSP 1 Score: 110.9 bits (276), Expect = 4.9e-23
Identity = 124/438 (28.31%), Postives = 207/438 (47.26%), Query Frame = 0


Query: 106 EVKKSKRKEKSRDRELDNEVIEKDDEERGFQSRGVVKKNKRNGAEIGSEFSGELKIDEQR 165
           +V   K++    +  L+    E D+EE  +      + N+ + ++   +     K D++ 
Sbjct: 47  KVTAPKQQTNENESTLNQSANESDEEEEEYND----ESNEGDDSDDAEQTEPTSKNDDEN 106

Query: 166 SDSKLGVDVKLTKEKKKRKRDELEREYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDF 225
            + +     KL  E+ + ++DE +   EAK   +S+VAE+  +    T V  K K ++  
Sbjct: 107 ENLEAQYFDKLLSEQNE-EQDESKESSEAK---SSKVAEERTKAKVATTVDLKEKELE-- 166

Query: 226 SEMLVTKEGFDDESKLLRTVFVGNLPL-----KVKKKALGKEFSQFGEIESVRIRSVPLA 285
                         K  RTVFVGN+P      K+  K     F  +G+I+S+R RS+   
Sbjct: 167 --------------KADRTVFVGNVPADVITSKIIAKNFKNLFKHYGKIDSIRYRSISF- 226

Query: 286 NSKKPRKGAILSKKVNEDADSSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPPRK 345
           +   PRK A   K +++  DS +AY+V+K + ++ A+   N  VF  +H+RVD    P  
Sbjct: 227 DEHLPRKVAFAKKNLHKSRDSVNAYIVYKEKPASIAAKELNATVFEDHHLRVDHVSHPAP 286

Query: 346 KLKVGSSPIYEPKRTVFVGNLPFDVKDEELYQLFCGIENVGSNVEAVRVIRDPNVNIGKG 405
           K         + KRT+FVGNL F+ K+E L++ F     +  +VE+VR+IRD   N+GKG
Sbjct: 287 K---------DNKRTIFVGNLDFEEKEETLWKYF--NSKLDQDVESVRIIRDSKTNLGKG 346

Query: 406 FAYVFFKTKEAANS--VINNQKL----QLRDRALRL----FHAKPNLTS----------- 465
           FA V FK   + N   ++N++ L    Q + R LR+     +AKP+L S           
Sbjct: 347 FALVQFKDTLSVNKALLLNDKPLETGTQKKGRKLRISRAKSNAKPSLMSPNHFDNQKKKF 406

Query: 466 ----TPLKKRNNPSTEVDRS------AKKRAVDSGLRTPDSSKRATPKATVASYQGLRAS 507
               +  K  +N  T++ R+      A +  V    R     +RAT    +   +G++ S
Sbjct: 407 AAGKSQQKLNDNQKTKIGRAQSTLGKADRSTVGKAKRIILEGQRATKGEAI---KGIKGS 445

[Close]

BLAST of Cp4.1LG08g08710 vs. ExPASy Swiss-Prot
Match: P42696 (RNA-binding protein 34 OS=Homo sapiens OX=9606 GN=RBM34 PE=1 SV=2)

HSP 1 Score: 110.5 bits (275), Expect = 6.5e-23
Identity = 115/380 (30.26%), Postives = 178/380 (46.84%), Query Frame = 0


Query: 141 VKKNKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKEKKKRKRDELEREYEAKKYG-A 200
           +KK KRN  E   E + +++    +  +K        K K K+K    E++   ++   A
Sbjct: 79  IKKTKRNEEE---ESTSQIERPLSQEPAK--------KVKAKKKHTNAEKKLADRESALA 138

Query: 201 SEVAEDEVEGSGGT--------VVGKKRKAMDDFSEMLVT---KEGFDDESKLL---RTV 260
           S   E+E+    G         V    RK +DD  + +V+   K   + E + L   RTV
Sbjct: 139 SADLEEEIHQKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEERLKNERTV 198

Query: 261 FVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDADSSHAY 320
           FVGNLP+   KK L   F ++G+IESVR RS+  A     +K A + +K++ D  + +AY
Sbjct: 199 FVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAY 258

Query: 321 VVFKTEESAQASLSHNMAVFA-GNHIRVDRACPPRKKLKVGSSPIYEPKRTVFVGNLPFD 380
           VVFK E +A  +L  N A  A G  IRVD A          S      KR+VFVGNLP+ 
Sbjct: 259 VVFKEESAATQALKRNGAQIADGFRIRVDLA----------SETSSRDKRSVFVGNLPYK 318

Query: 381 VKDE--ELYQLFCGIENVGSNVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINNQKLQ 440
           V++   E + L CG      ++ AVR++RD    IGKGF YV F+  ++ +  +     +
Sbjct: 319 VEESAIEKHFLDCG------SIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSE 378

Query: 441 LRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRSAKKRAVDSGLRTPDSSKRATPKATVAS 500
           L  R LR+  +     +    K+ N +  +   +K +    GL     +    PK+    
Sbjct: 379 LMGRKLRVMRS----VNKEKFKQQNSNPRLKNVSKPK---QGLNFTSKTAEGHPKSLFIG 424

[Close]

BLAST of Cp4.1LG08g08710 vs. ExPASy Swiss-Prot
Match: Q8C5L7 (RNA-binding protein 34 OS=Mus musculus OX=10090 GN=Rbm34 PE=1 SV=2)

HSP 1 Score: 102.8 bits (255), Expect = 1.3e-20
Identity = 116/394 (29.44%), Postives = 189/394 (47.97%), Query Frame = 0


Query: 113 KEKSRDRELDNEVIEKDDEERGFQSRGVVKKNKRNGAEIGSEFSGELKIDEQRSDSKLGV 172
           +E S+ R+LD+   + DDEE        V + K+    +  E S ++K+ ++ SD+    
Sbjct: 74  QETSKKRKLDD---DDDDEEES------VSQTKK---PVLQEPSRKVKV-KKLSDA---- 133

Query: 173 DVKLTKEKKKRKRDELERE-YEAKKYGASEVAEDEVEGSGGTVVGKKRK-AMDDFSEMLV 232
           D +L   +      +LE E ++ +  G    ++   + + G  +      A D      +
Sbjct: 134 DKRLANRESALASADLEEELHQDQGQGRRRRSQSRGKVADGEALDVALSLAKDGGQRTKI 193

Query: 233 TKEGFDDESKLLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAI 292
                ++  K  RTVFVGNLP+   KK L   F ++G++ESVR RSV  A     +K A 
Sbjct: 194 PVNPEEERLKNERTVFVGNLPVTCNKKKLKSFFKEYGQVESVRFRSVMPAEGTLTKKLAA 253

Query: 293 LSKKVNEDADSSHAYVVFKTEESAQASLSHNMAVFA-GNHIRVDRACPPRKKLKVGSSPI 352
           + +K + D  S +AYVVFK E +A  +L  N A  A G  IRVD A          S   
Sbjct: 254 IKRKFHPDQKSINAYVVFKDESAAAKALQRNGAQIAEGFRIRVDLA----------SETA 313

Query: 353 YEPKRTVFVGNLPFDVKDEELYQLF--CGIENVGSNVEAVRVIRDPNVNIGKGFAYVFFK 412
              KR+VFVGNLP+ ++D  L + F  CG      ++ AVR++R+P   +G+GF YV F+
Sbjct: 314 SRDKRSVFVGNLPYKIEDSALEEHFLDCG------SIVAVRIVRNPLTGVGRGFGYVLFE 373

Query: 413 TKEAANSVINNQKLQLRDRALRLFHAKPNLTSTPLKKRN-NPSTEVDRSAKKRAVDSGLR 472
             +A +  +     +L  R LR+     ++    LK++N NPS + D    K+ ++   +
Sbjct: 374 NTDAVHLALKLNNSELMGRKLRVMR---SVNKEKLKQQNSNPSLKKDVIKPKQRLNFTSK 431

Query: 473 TPDSSKRATPKATVASYQGLRASKPGSQKKNQAK 501
                 +     +  ++ G +A     +KK Q K
Sbjct: 434 EGKFHSKEGKFHSKNAFIGEKAVLMKKKKKGQKK 431

[Close]

BLAST of Cp4.1LG08g08710 vs. NCBI nr
Match: XP_023540437.1 (nucleolar protein 12 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1104 bits (2856), Expect = 0.0
Identity = 597/597 (100.00%), Postives = 597/597 (100.00%), Query Frame = 0


Query: 1   MGKKKTNGPKSSSEEVAIGSASSSVFETLFGNVGAESDGVSIFSTENPFRRKDTSSTPVA 60
           MGKKKTNGPKSSSEEVAIGSASSSVFETLFGNVGAESDGVSIFSTENPFRRKDTSSTPVA
Sbjct: 1   MGKKKTNGPKSSSEEVAIGSASSSVFETLFGNVGAESDGVSIFSTENPFRRKDTSSTPVA 60

Query: 61  AVAEKSPSGGADGHTIDDVKSREKSKEKRVGMDLDSAENGVKSSSEVKKSKRKEKSRDRE 120
           AVAEKSPSGGADGHTIDDVKSREKSKEKRVGMDLDSAENGVKSSSEVKKSKRKEKSRDRE
Sbjct: 61  AVAEKSPSGGADGHTIDDVKSREKSKEKRVGMDLDSAENGVKSSSEVKKSKRKEKSRDRE 120

Query: 121 LDNEVIEKDDEERGFQSRGVVKKNKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKEK 180
           LDNEVIEKDDEERGFQSRGVVKKNKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKEK
Sbjct: 121 LDNEVIEKDDEERGFQSRGVVKKNKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKEK 180

Query: 181 KKRKRDELEREYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLVTKEGFDDESK 240
           KKRKRDELEREYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLVTKEGFDDESK
Sbjct: 181 KKRKRDELEREYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLVTKEGFDDESK 240

Query: 241 LLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDAD 300
           LLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDAD
Sbjct: 241 LLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDAD 300

Query: 301 SSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPPRKKLKVGSSPIYEPKRTVFVGN 360
           SSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPPRKKLKVGSSPIYEPKRTVFVGN
Sbjct: 301 SSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPPRKKLKVGSSPIYEPKRTVFVGN 360

Query: 361 LPFDVKDEELYQLFCGIENVGSNVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINNQK 420
           LPFDVKDEELYQLFCGIENVGSNVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINNQK
Sbjct: 361 LPFDVKDEELYQLFCGIENVGSNVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINNQK 420

Query: 421 LQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRSAKKRAVDSGLRTPDSSKRATPKATV 480
           LQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRSAKKRAVDSGLRTPDSSKRATPKATV
Sbjct: 421 LQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRSAKKRAVDSGLRTPDSSKRATPKATV 480

Query: 481 ASYQGLRASKPGSQKKNQAKGSGTKWTKSHSNSKEKRVDYKRRRPEDFPERTSERKGKRP 540
           ASYQGLRASKPGSQKKNQAKGSGTKWTKSHSNSKEKRVDYKRRRPEDFPERTSERKGKRP
Sbjct: 481 ASYQGLRASKPGSQKKNQAKGSGTKWTKSHSNSKEKRVDYKRRRPEDFPERTSERKGKRP 540

Query: 541 EKMSERKGKRPAVANRKAVANASRNGVAAPKQGGAKRKSDSRTPESSHRNKRVKRFR 597
           EKMSERKGKRPAVANRKAVANASRNGVAAPKQGGAKRKSDSRTPESSHRNKRVKRFR
Sbjct: 541 EKMSERKGKRPAVANRKAVANASRNGVAAPKQGGAKRKSDSRTPESSHRNKRVKRFR 597

[Close]

BLAST of Cp4.1LG08g08710 vs. NCBI nr
Match: XP_022922379.1 (nucleolar protein 12 [Cucurbita moschata])

HSP 1 Score: 1081 bits (2796), Expect = 0.0
Identity = 585/597 (97.99%), Postives = 590/597 (98.83%), Query Frame = 0


Query: 1   MGKKKTNGPKSSSEEVAIGSASSSVFETLFGNVGAESDGVSIFSTENPFRRKDTSSTPVA 60
           MGKKKTNGPKSSSEEVAIGSA SSVFETLFGNVGAESDGVSIFST+NPFRRKDTS TPVA
Sbjct: 1   MGKKKTNGPKSSSEEVAIGSAPSSVFETLFGNVGAESDGVSIFSTDNPFRRKDTSLTPVA 60

Query: 61  AVAEKSPSGGADGHTIDDVKSREKSKEKRVGMDLDSAENGVKSSSEVKKSKRKEKSRDRE 120
           AVAEKSPSGGAD HTIDDVKSR+KSKEKRVGMDLDSAENGVKSSSEVKKSKRKEKSRDRE
Sbjct: 61  AVAEKSPSGGADDHTIDDVKSRKKSKEKRVGMDLDSAENGVKSSSEVKKSKRKEKSRDRE 120

Query: 121 LDNEVIEKDDEERGFQSRGVVKKNKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKEK 180
           LDNEVIEKDDEERGFQSRGVVKKNKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKEK
Sbjct: 121 LDNEVIEKDDEERGFQSRGVVKKNKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKEK 180

Query: 181 KKRKRDELEREYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLVTKEGFDDESK 240
           KKRKRDELEREYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLVTKEGFDDESK
Sbjct: 181 KKRKRDELEREYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLVTKEGFDDESK 240

Query: 241 LLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDAD 300
           LLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDAD
Sbjct: 241 LLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDAD 300

Query: 301 SSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPPRKKLKVGSSPIYEPKRTVFVGN 360
           SSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPPRKKLKVGSSPIY+PKRTVFVGN
Sbjct: 301 SSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPPRKKLKVGSSPIYDPKRTVFVGN 360

Query: 361 LPFDVKDEELYQLFCGIENVGSNVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINNQK 420
           LPFDVKDEELYQLFCGIENVGS+VEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINNQK
Sbjct: 361 LPFDVKDEELYQLFCGIENVGSSVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINNQK 420

Query: 421 LQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRSAKKRAVDSGLRTPDSSKRATPKATV 480
           LQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRSAKKRAVDSGLRTPDSSKR TPKATV
Sbjct: 421 LQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRSAKKRAVDSGLRTPDSSKRVTPKATV 480

Query: 481 ASYQGLRASKPGSQKKNQAKGSGTKWTKSHSNSKEKRVDYKRRRPEDFPERTSERKGKRP 540
           ASYQGLRASKPGSQKKNQAKGSGTKWTKSHSNSKEKRV +KRRRPEDFPERTSERKGKRP
Sbjct: 481 ASYQGLRASKPGSQKKNQAKGSGTKWTKSHSNSKEKRVAHKRRRPEDFPERTSERKGKRP 540

Query: 541 EKMSERKGKRPAVANRKAVANASRNGVAAPKQGGAKRKSDSRTPESSHRNKRVKRFR 597
           EKMSERKGKRPAVANRKAVANASRNGVAAPKQGG KRKSDSRTPESSHRNKRVKR R
Sbjct: 541 EKMSERKGKRPAVANRKAVANASRNGVAAPKQGGVKRKSDSRTPESSHRNKRVKRLR 597

[Close]

BLAST of Cp4.1LG08g08710 vs. NCBI nr
Match: KAG7028265.1 (nop12, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 1080 bits (2794), Expect = 0.0
Identity = 581/597 (97.32%), Postives = 591/597 (98.99%), Query Frame = 0


Query: 1   MGKKKTNGPKSSSEEVAIGSASSSVFETLFGNVGAESDGVSIFSTENPFRRKDTSSTPVA 60
           MGKKKTNGPKSSSEEVAIGSA SSVFETLFGNVGAESDGVSIFSTENPFRRKDTSSTPVA
Sbjct: 1   MGKKKTNGPKSSSEEVAIGSAPSSVFETLFGNVGAESDGVSIFSTENPFRRKDTSSTPVA 60

Query: 61  AVAEKSPSGGADGHTIDDVKSREKSKEKRVGMDLDSAENGVKSSSEVKKSKRKEKSRDRE 120
           AVAEK PSGGAD HTIDDV+SR+K+KEKRVGMDLDSAENGVKSSSEVKKSKRKEKSRDRE
Sbjct: 61  AVAEKFPSGGADDHTIDDVRSRKKNKEKRVGMDLDSAENGVKSSSEVKKSKRKEKSRDRE 120

Query: 121 LDNEVIEKDDEERGFQSRGVVKKNKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKEK 180
           LDNEVIE DDEERGFQSRGVVKKNKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKEK
Sbjct: 121 LDNEVIENDDEERGFQSRGVVKKNKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKEK 180

Query: 181 KKRKRDELEREYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLVTKEGFDDESK 240
           KKRKRDELEREYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEML+TKEGFDDESK
Sbjct: 181 KKRKRDELEREYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLITKEGFDDESK 240

Query: 241 LLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDAD 300
           LLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDAD
Sbjct: 241 LLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDAD 300

Query: 301 SSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPPRKKLKVGSSPIYEPKRTVFVGN 360
           SSHAYVVFKTEESAQASL+HNMAVFAGNHIRVDRACPPRKKLKVGSSPIY+PKRTVFVGN
Sbjct: 301 SSHAYVVFKTEESAQASLTHNMAVFAGNHIRVDRACPPRKKLKVGSSPIYDPKRTVFVGN 360

Query: 361 LPFDVKDEELYQLFCGIENVGSNVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINNQK 420
           LPFDVKDEELYQLFCG+ENVGS+VEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINNQK
Sbjct: 361 LPFDVKDEELYQLFCGMENVGSSVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINNQK 420

Query: 421 LQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRSAKKRAVDSGLRTPDSSKRATPKATV 480
           LQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRSAKKRAVDSGLRTPDSSKR TPKATV
Sbjct: 421 LQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRSAKKRAVDSGLRTPDSSKRVTPKATV 480

Query: 481 ASYQGLRASKPGSQKKNQAKGSGTKWTKSHSNSKEKRVDYKRRRPEDFPERTSERKGKRP 540
           ASYQGLRASKPGSQKKNQAKGSGTKWTKSHSNSKEKRVD+KRRRPEDFPERTSERKGKRP
Sbjct: 481 ASYQGLRASKPGSQKKNQAKGSGTKWTKSHSNSKEKRVDHKRRRPEDFPERTSERKGKRP 540

Query: 541 EKMSERKGKRPAVANRKAVANASRNGVAAPKQGGAKRKSDSRTPESSHRNKRVKRFR 597
           EKMSERKGKRPAVANRKAVANASRNG+AAPKQGG KRKSDSRTPESSHRNKRVKRFR
Sbjct: 541 EKMSERKGKRPAVANRKAVANASRNGIAAPKQGGVKRKSDSRTPESSHRNKRVKRFR 597

[Close]

BLAST of Cp4.1LG08g08710 vs. NCBI nr
Match: KAG6596731.1 (Inositol-tetrakisphosphate 1-kinase 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 1071 bits (2771), Expect = 0.0
Identity = 578/594 (97.31%), Postives = 586/594 (98.65%), Query Frame = 0


Query: 1   MGKKKTNGPKSSSEEVAIGSASSSVFETLFGNVGAESDGVSIFSTENPFRRKDTSSTPVA 60
           MGKKKTNGPKSSSEEVAIGSA SSVFETLFGNVGAESDGVSIFSTENPFRRKDTSSTPVA
Sbjct: 1   MGKKKTNGPKSSSEEVAIGSAPSSVFETLFGNVGAESDGVSIFSTENPFRRKDTSSTPVA 60

Query: 61  AVAEKSPSGGADGHTIDDVKSREKSKEKRVGMDLDSAENGVKSSSEVKKSKRKEKSRDRE 120
           AVAEK PSGGAD HTIDDV+SR+K+KEKRVGMDLDSAENGVKSSSEVKKSKRKEKSRDRE
Sbjct: 61  AVAEKFPSGGADDHTIDDVRSRKKNKEKRVGMDLDSAENGVKSSSEVKKSKRKEKSRDRE 120

Query: 121 LDNEVIEKDDEERGFQSRGVVKKNKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKEK 180
           LDNEVIE DDEERGFQSRGVVKKNKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKEK
Sbjct: 121 LDNEVIENDDEERGFQSRGVVKKNKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKEK 180

Query: 181 KKRKRDELEREYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLVTKEGFDDESK 240
           KKRKRDELEREYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLVTKEGFDDESK
Sbjct: 181 KKRKRDELEREYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLVTKEGFDDESK 240

Query: 241 LLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDAD 300
           LLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDAD
Sbjct: 241 LLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDAD 300

Query: 301 SSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPPRKKLKVGSSPIYEPKRTVFVGN 360
           SSHAYVVFKTEESAQASL+HNMAVFAGNHIRVDRACPPRKKLKVGSSPIY+PKRTVFVGN
Sbjct: 301 SSHAYVVFKTEESAQASLTHNMAVFAGNHIRVDRACPPRKKLKVGSSPIYDPKRTVFVGN 360

Query: 361 LPFDVKDEELYQLFCGIENVGSNVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINNQK 420
           LPFDVKDEELYQLFCGIENVGS+VEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINNQK
Sbjct: 361 LPFDVKDEELYQLFCGIENVGSSVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINNQK 420

Query: 421 LQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRSAKKRAVDSGLRTPDSSKRATPKATV 480
           LQLRDRALRLFHAKPNLTS PLKKRNNPSTEVDRSAKKRAVDSGLRTPDSSKR TPKATV
Sbjct: 421 LQLRDRALRLFHAKPNLTSIPLKKRNNPSTEVDRSAKKRAVDSGLRTPDSSKRVTPKATV 480

Query: 481 ASYQGLRASKPGSQKKNQAKGSGTKWTKSHSNSKEKRVDYKRRRPEDFPERTSERKGKRP 540
           ASYQGLRASKPGSQKKNQAKGSGTKWTKSHSNSKEKRV +KRRRPEDFPERTSERKGKRP
Sbjct: 481 ASYQGLRASKPGSQKKNQAKGSGTKWTKSHSNSKEKRVAHKRRRPEDFPERTSERKGKRP 540

Query: 541 EKMSERKGKRPAVANRKAVANASRNGVAAPKQGGAKRKSDSRTPESSHRNKRVK 594
           EKMSERKGKRPAVANRKAVANASRNG+AAPKQGG KRKSDSRTPESSHRNKRVK
Sbjct: 541 EKMSERKGKRPAVANRKAVANASRNGIAAPKQGGVKRKSDSRTPESSHRNKRVK 594

[Close]

BLAST of Cp4.1LG08g08710 vs. NCBI nr
Match: XP_023005336.1 (nucleolar protein 12 [Cucurbita maxima])

HSP 1 Score: 1065 bits (2755), Expect = 0.0
Identity = 582/598 (97.32%), Postives = 589/598 (98.49%), Query Frame = 0


Query: 1   MGKKKTNGPKSSSEEVAIGSASSSVFETLFGNVGAESDGVSIFSTENPFRRKDTSSTPVA 60
           MGKKKTN PKSSSEEVAIGSA SSVFETLFGNVGAESDGVSIFSTENPFRRKDTSSTP+A
Sbjct: 1   MGKKKTNDPKSSSEEVAIGSAPSSVFETLFGNVGAESDGVSIFSTENPFRRKDTSSTPLA 60

Query: 61  AVAEKSPSGGADGHTIDDVKSREKSKEKRVGMDLDSAENGVKSSSEVKKSKRKEKSRDRE 120
           AVAEKSPSGGAD HTIDDVKSR+KSKEKRVGMDLDSAENGVKSSS+VKKSKRK+KSRDRE
Sbjct: 61  AVAEKSPSGGADDHTIDDVKSRKKSKEKRVGMDLDSAENGVKSSSQVKKSKRKDKSRDRE 120

Query: 121 LDNEVIEKDDEERGFQSRGVVKKNKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKEK 180
           LDNEVIEKDDEERGFQSRGVVKKNKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKEK
Sbjct: 121 LDNEVIEKDDEERGFQSRGVVKKNKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKEK 180

Query: 181 KKRKRDELEREYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLVTKEGFDDESK 240
           KKRKRDELEREYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLVTKEGFDDESK
Sbjct: 181 KKRKRDELEREYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLVTKEGFDDESK 240

Query: 241 LLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDAD 300
           LLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDAD
Sbjct: 241 LLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDAD 300

Query: 301 SSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPPRKKLKVGSSPIYEPKRTVFVGN 360
           SSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPPRKKLKVGSSPIY+PKRTVFVGN
Sbjct: 301 SSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPPRKKLKVGSSPIYDPKRTVFVGN 360

Query: 361 LPFDVKDEELYQLFCGIENVGSNVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINNQK 420
           LPFDVKDEELYQLFCGIENVGS+VEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINNQK
Sbjct: 361 LPFDVKDEELYQLFCGIENVGSSVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINNQK 420

Query: 421 LQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRS-AKKRAVDSGLRTPDSSKRATPKAT 480
           LQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRS AKKRAVDSGLRTPDSSKRA  KAT
Sbjct: 421 LQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRSSAKKRAVDSGLRTPDSSKRA--KAT 480

Query: 481 VASYQGLRASKPGSQKKNQAKGSGTKWTKSHSNSKEKRVDYKRRRPEDFPERTSERKGKR 540
           VASYQGLRASKP SQKKNQAKGSGTKWTKSHSNSKEKRVD+KRRRPEDFPE TSERKGKR
Sbjct: 481 VASYQGLRASKPVSQKKNQAKGSGTKWTKSHSNSKEKRVDHKRRRPEDFPESTSERKGKR 540

Query: 541 PEKMSERKGKRPAVANRKAVANASRNGVAAPKQGGAKRKSDSRTPESSHRNKRVKRFR 597
           PEKMSERKGKRPAVANRKAVANASRNGVAAPKQGG KRKSDSRTPESSHRNKRVKRFR
Sbjct: 541 PEKMSERKGKRPAVANRKAVANASRNGVAAPKQGGVKRKSDSRTPESSHRNKRVKRFR 596

[Close]

BLAST of Cp4.1LG08g08710 vs. ExPASy TrEMBL
Match: A0A6J1E378 (nucleolar protein 12 OS=Cucurbita moschata OX=3662 GN=LOC111430358 PE=4 SV=1)

HSP 1 Score: 1081 bits (2796), Expect = 0.0
Identity = 585/597 (97.99%), Postives = 590/597 (98.83%), Query Frame = 0


Query: 1   MGKKKTNGPKSSSEEVAIGSASSSVFETLFGNVGAESDGVSIFSTENPFRRKDTSSTPVA 60
           MGKKKTNGPKSSSEEVAIGSA SSVFETLFGNVGAESDGVSIFST+NPFRRKDTS TPVA
Sbjct: 1   MGKKKTNGPKSSSEEVAIGSAPSSVFETLFGNVGAESDGVSIFSTDNPFRRKDTSLTPVA 60

Query: 61  AVAEKSPSGGADGHTIDDVKSREKSKEKRVGMDLDSAENGVKSSSEVKKSKRKEKSRDRE 120
           AVAEKSPSGGAD HTIDDVKSR+KSKEKRVGMDLDSAENGVKSSSEVKKSKRKEKSRDRE
Sbjct: 61  AVAEKSPSGGADDHTIDDVKSRKKSKEKRVGMDLDSAENGVKSSSEVKKSKRKEKSRDRE 120

Query: 121 LDNEVIEKDDEERGFQSRGVVKKNKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKEK 180
           LDNEVIEKDDEERGFQSRGVVKKNKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKEK
Sbjct: 121 LDNEVIEKDDEERGFQSRGVVKKNKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKEK 180

Query: 181 KKRKRDELEREYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLVTKEGFDDESK 240
           KKRKRDELEREYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLVTKEGFDDESK
Sbjct: 181 KKRKRDELEREYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLVTKEGFDDESK 240

Query: 241 LLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDAD 300
           LLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDAD
Sbjct: 241 LLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDAD 300

Query: 301 SSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPPRKKLKVGSSPIYEPKRTVFVGN 360
           SSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPPRKKLKVGSSPIY+PKRTVFVGN
Sbjct: 301 SSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPPRKKLKVGSSPIYDPKRTVFVGN 360

Query: 361 LPFDVKDEELYQLFCGIENVGSNVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINNQK 420
           LPFDVKDEELYQLFCGIENVGS+VEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINNQK
Sbjct: 361 LPFDVKDEELYQLFCGIENVGSSVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINNQK 420

Query: 421 LQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRSAKKRAVDSGLRTPDSSKRATPKATV 480
           LQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRSAKKRAVDSGLRTPDSSKR TPKATV
Sbjct: 421 LQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRSAKKRAVDSGLRTPDSSKRVTPKATV 480

Query: 481 ASYQGLRASKPGSQKKNQAKGSGTKWTKSHSNSKEKRVDYKRRRPEDFPERTSERKGKRP 540
           ASYQGLRASKPGSQKKNQAKGSGTKWTKSHSNSKEKRV +KRRRPEDFPERTSERKGKRP
Sbjct: 481 ASYQGLRASKPGSQKKNQAKGSGTKWTKSHSNSKEKRVAHKRRRPEDFPERTSERKGKRP 540

Query: 541 EKMSERKGKRPAVANRKAVANASRNGVAAPKQGGAKRKSDSRTPESSHRNKRVKRFR 597
           EKMSERKGKRPAVANRKAVANASRNGVAAPKQGG KRKSDSRTPESSHRNKRVKR R
Sbjct: 541 EKMSERKGKRPAVANRKAVANASRNGVAAPKQGGVKRKSDSRTPESSHRNKRVKRLR 597

[Close]

BLAST of Cp4.1LG08g08710 vs. ExPASy TrEMBL
Match: A0A6J1KUP0 (nucleolar protein 12 OS=Cucurbita maxima OX=3661 GN=LOC111498364 PE=4 SV=1)

HSP 1 Score: 1065 bits (2755), Expect = 0.0
Identity = 582/598 (97.32%), Postives = 589/598 (98.49%), Query Frame = 0


Query: 1   MGKKKTNGPKSSSEEVAIGSASSSVFETLFGNVGAESDGVSIFSTENPFRRKDTSSTPVA 60
           MGKKKTN PKSSSEEVAIGSA SSVFETLFGNVGAESDGVSIFSTENPFRRKDTSSTP+A
Sbjct: 1   MGKKKTNDPKSSSEEVAIGSAPSSVFETLFGNVGAESDGVSIFSTENPFRRKDTSSTPLA 60

Query: 61  AVAEKSPSGGADGHTIDDVKSREKSKEKRVGMDLDSAENGVKSSSEVKKSKRKEKSRDRE 120
           AVAEKSPSGGAD HTIDDVKSR+KSKEKRVGMDLDSAENGVKSSS+VKKSKRK+KSRDRE
Sbjct: 61  AVAEKSPSGGADDHTIDDVKSRKKSKEKRVGMDLDSAENGVKSSSQVKKSKRKDKSRDRE 120

Query: 121 LDNEVIEKDDEERGFQSRGVVKKNKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKEK 180
           LDNEVIEKDDEERGFQSRGVVKKNKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKEK
Sbjct: 121 LDNEVIEKDDEERGFQSRGVVKKNKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKEK 180

Query: 181 KKRKRDELEREYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLVTKEGFDDESK 240
           KKRKRDELEREYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLVTKEGFDDESK
Sbjct: 181 KKRKRDELEREYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLVTKEGFDDESK 240

Query: 241 LLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDAD 300
           LLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDAD
Sbjct: 241 LLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDAD 300

Query: 301 SSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPPRKKLKVGSSPIYEPKRTVFVGN 360
           SSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPPRKKLKVGSSPIY+PKRTVFVGN
Sbjct: 301 SSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPPRKKLKVGSSPIYDPKRTVFVGN 360

Query: 361 LPFDVKDEELYQLFCGIENVGSNVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINNQK 420
           LPFDVKDEELYQLFCGIENVGS+VEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINNQK
Sbjct: 361 LPFDVKDEELYQLFCGIENVGSSVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINNQK 420

Query: 421 LQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRS-AKKRAVDSGLRTPDSSKRATPKAT 480
           LQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRS AKKRAVDSGLRTPDSSKRA  KAT
Sbjct: 421 LQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRSSAKKRAVDSGLRTPDSSKRA--KAT 480

Query: 481 VASYQGLRASKPGSQKKNQAKGSGTKWTKSHSNSKEKRVDYKRRRPEDFPERTSERKGKR 540
           VASYQGLRASKP SQKKNQAKGSGTKWTKSHSNSKEKRVD+KRRRPEDFPE TSERKGKR
Sbjct: 481 VASYQGLRASKPVSQKKNQAKGSGTKWTKSHSNSKEKRVDHKRRRPEDFPESTSERKGKR 540

Query: 541 PEKMSERKGKRPAVANRKAVANASRNGVAAPKQGGAKRKSDSRTPESSHRNKRVKRFR 597
           PEKMSERKGKRPAVANRKAVANASRNGVAAPKQGG KRKSDSRTPESSHRNKRVKRFR
Sbjct: 541 PEKMSERKGKRPAVANRKAVANASRNGVAAPKQGGVKRKSDSRTPESSHRNKRVKRFR 596

[Close]

BLAST of Cp4.1LG08g08710 vs. ExPASy TrEMBL
Match: A0A6J1CWE3 (nucleolar protein 12 OS=Momordica charantia OX=3673 GN=LOC111014841 PE=4 SV=1)

HSP 1 Score: 780 bits (2013), Expect = 1.48e-277
Identity = 457/630 (72.54%), Postives = 506/630 (80.32%), Query Frame = 0


Query: 1   MGKKKTNGPKSSSEEVAIGSASSSVFETLFGNVGAESDGVSIFSTENPFRRK----DTSS 60
           MGKKKT+ PK+  E +A  SASSSVFETLFGNVG +S GVSIFS++NPFRR+    D+ S
Sbjct: 1   MGKKKTSDPKNPREAMASLSASSSVFETLFGNVGVQSGGVSIFSSDNPFRRRHQAADSDS 60

Query: 61  TPVAAVAEKSPSGGADGHTIDDVKSREKSKEKRVGMDLDSAENGVKSSSEVKKSKRKEKS 120
            P AA AE++P  G++ H +DDVKS +  KEKR G DL SAE   KSSSE+KKSKRKEK+
Sbjct: 61  IPAAA-AEETPGAGSNDHIVDDVKSLKNGKEKRAGNDLGSAEEASKSSSEIKKSKRKEKN 120

Query: 121 RD-RELDNEVIEKDDEERG---FQSRGVVKKNKRNGAEIGSE----------FSGELKID 180
           RD R+L N  IE++  E G    QS GV+KKNKR G+  GSE          FSG LK++
Sbjct: 121 RDHRDLGNGAIEEEGGENGGLGSQSLGVLKKNKRKGSASGSEINDTKETSPEFSGALKVE 180

Query: 181 EQ-------------RSDSKLGVDVKLTKEKKKRKRDELEREYEAKKYGASEVAEDEVEG 240
           EQ             R+DSKLG   KL KEKKKRKRDELEREYEA+KYGASEVAED  EG
Sbjct: 181 EQSNRKLNPRSKTGERTDSKLGEVGKLMKEKKKRKRDELEREYEARKYGASEVAEDGEEG 240

Query: 241 SGGTVVGKKRKAMDDFSEMLVTKEGFDDESKLLRTVFVGNLPLKVKKKALGKEFSQFGEI 300
           SGG V GKKRKA+DD SEMLV+KEGFDDESKLLRTVFVGNLPLKVKKKALGKEFS+FGEI
Sbjct: 241 SGGNVAGKKRKALDDPSEMLVSKEGFDDESKLLRTVFVGNLPLKVKKKALGKEFSRFGEI 300

Query: 301 ESVRIRSVPLANSKKPRKGAILSKKVNEDADSSHAYVVFKTEESAQASLSHNMAVFAGNH 360
           ESVRIRSVPLANSKKPRKGAILSKKVNE A+SSHAY+VFK  ESAQASLSHNMAVFAGNH
Sbjct: 301 ESVRIRSVPLANSKKPRKGAILSKKVNESAESSHAYIVFKMVESAQASLSHNMAVFAGNH 360

Query: 361 IRVDRACPPRKKLKVGSSPIYEPKRTVFVGNLPFDVKDEELYQLFCGIENVGSNVEAVRV 420
           IRVDRACPPRKKLKVGS+PIY+PKRTVFVGNLPFDVKDEELYQLFCGI+N+G++VEAVRV
Sbjct: 361 IRVDRACPPRKKLKVGSAPIYDPKRTVFVGNLPFDVKDEELYQLFCGIDNLGASVEAVRV 420

Query: 421 IRDPNVNIGKGFAYVFFKTKEAANSVINNQKLQLRDRALRLFHAKPNLTSTPLKKRNNPS 480
           IRDPNVNIGKGFAYVFFKT+EAANSV+N QKL+LRDR+LRLFHA PNL STPLKKR+ P 
Sbjct: 421 IRDPNVNIGKGFAYVFFKTREAANSVVNKQKLELRDRSLRLFHANPNLVSTPLKKRSRPP 480

Query: 481 TEVDRS-AKKRAVDSGLRTPDSSKRATPKATVASYQGLRASKPGS-QKKNQAKGSGTKWT 540
           TE DR+ AKK AV  G  TPDSSKRATPK+T ASYQGLR+SK GS QKK   K +G KW 
Sbjct: 481 TEADRTPAKKMAVGPGSWTPDSSKRATPKSTPASYQGLRSSKTGSAQKKTGTKRTGLKWP 540

Query: 541 KSHSNSKEKRVDYKRRRPEDFPERTSERKGKRPEKMSERKGKRPAVANRKAVANASRNGV 597
           KS+SNSKEK VD+KR               K+PEK  ERKGKRPAVANRKA A AS+NG 
Sbjct: 541 KSNSNSKEKPVDHKR---------------KKPEKTPERKGKRPAVANRKAEARASKNGG 600

[Close]

BLAST of Cp4.1LG08g08710 vs. ExPASy TrEMBL
Match: A0A5A7UHL8 (Nucleolar protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001480 PE=4 SV=1)

HSP 1 Score: 747 bits (1929), Expect = 1.45e-265
Identity = 433/602 (71.93%), Postives = 484/602 (80.40%), Query Frame = 0


Query: 1   MGKKKTNGPKSSSEEVAIGSASSSVFETLFGNVGAESDGVSIFSTENPFRRKDTSSTPVA 60
           MGK K    K+  +E+   +   SVF+TLFG+ G E+  VSIFS++NPFRRKD+ S    
Sbjct: 1   MGKNKITDLKNPPDEIPTVATPFSVFDTLFGSAGVENPTVSIFSSDNPFRRKDSDSIS-P 60

Query: 61  AVAEKSPSGGADGHTIDDVKSREKSKEKRVGMDLDSAENGVKSSSEVKKSKRKEK--SRD 120
            +AE                SR K KEKRVG+DLDS E GVK+SSE+KKSK+KEK  SRD
Sbjct: 61  PLAEN---------------SRTKGKEKRVGIDLDSTE-GVKTSSEIKKSKKKEKEKSRD 120

Query: 121 RELDNEVIEKDDEERGFQSRGVVKKNKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTK 180
           RELDN     DD ERGF+S+G +K N++ G  +GSE S + +  ++   SKLG +VKL K
Sbjct: 121 RELDNVD---DDGERGFESQGGLKDNRKKGTALGSETSEKSRGFDR---SKLGENVKLMK 180

Query: 181 EKKKRKRDELEREYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLVTKEGFDDE 240
           E+KKRKRDELEREYEAKKYG S+VAEDEVEGSGG VVGKKRKA+DD SEMLVTKEGFDDE
Sbjct: 181 ERKKRKRDELEREYEAKKYGVSDVAEDEVEGSGGNVVGKKRKALDDPSEMLVTKEGFDDE 240

Query: 241 SKLLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPL--ANSKKPRKGAILSKKVN 300
           SKLLRTVFVGNLPLKVKKKAL KEFSQFGEI+SVRIRSVP+  ANSKKPRKGAI+SKK+N
Sbjct: 241 SKLLRTVFVGNLPLKVKKKALAKEFSQFGEIDSVRIRSVPIDIANSKKPRKGAIISKKLN 300

Query: 301 EDADSSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPPRKKLKVGSSPIYEPKRTV 360
           E ADSSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPP KKLKVG+ PIY+PKRTV
Sbjct: 301 EAADSSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPPHKKLKVGNGPIYDPKRTV 360

Query: 361 FVGNLPFDVKDEELYQLFCGIENVGSNVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVI 420
           FVGNLPFDVKDEELYQLFCGI+ +GS+VEAVRVIRDP VN+GKGFAYVFFKT+EAANSV+
Sbjct: 361 FVGNLPFDVKDEELYQLFCGIDTMGSSVEAVRVIRDPKVNVGKGFAYVFFKTREAANSVV 420

Query: 421 NNQKLQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRS-AKKRAVDSGLRTPDSSKRAT 480
           NNQKL+LR R LRLFHAK N TSTP KKRN P TE D + AKK AVDSGL TPDSSKR T
Sbjct: 421 NNQKLELRGRTLRLFHAKTNPTSTPFKKRNRPPTEADHTPAKKNAVDSGLGTPDSSKRVT 480

Query: 481 PKATVASYQGLRASKPGSQKKNQAKGSGTKWTKSHSNSKEKRVDYKRRRPEDFPERTSER 540
           PKAT ASYQGLRASK GSQKK   KGS TKW KSHSNSKEK +D+K+R            
Sbjct: 481 PKATNASYQGLRASKSGSQKKIHTKGSSTKWPKSHSNSKEKPIDHKKR------------ 540

Query: 541 KGKRPEKMSERKGKRPAVANRKAVANASRNGVAAPKQGGAKRKSDSRTPESSHRNKRVKR 597
             K PEK SERKGKRPAVANRKAVANA++NG+A PKQ G KRKSDSR+P SSHRNKRVK+
Sbjct: 541 --KGPEKTSERKGKRPAVANRKAVANATKNGIATPKQAGLKRKSDSRSPGSSHRNKRVKK 565

[Close]

BLAST of Cp4.1LG08g08710 vs. ExPASy TrEMBL
Match: A0A1S3BK91 (nucleolar protein 12 OS=Cucumis melo OX=3656 GN=LOC103490769 PE=4 SV=1)

HSP 1 Score: 746 bits (1927), Expect = 2.92e-265
Identity = 432/602 (71.76%), Postives = 483/602 (80.23%), Query Frame = 0


Query: 1   MGKKKTNGPKSSSEEVAIGSASSSVFETLFGNVGAESDGVSIFSTENPFRRKDTSSTPVA 60
           MGK K    K+  +E+   +   SVF+TLFG+ G E+  VSIFS++NPFRRKD+ S    
Sbjct: 1   MGKNKITDLKNPPDEIPTVATPFSVFDTLFGSAGVENPSVSIFSSDNPFRRKDSDSIS-P 60

Query: 61  AVAEKSPSGGADGHTIDDVKSREKSKEKRVGMDLDSAENGVKSSSEVKKSKRKEK--SRD 120
            +AE                SR K KEKRVG+DLDS E GVK+SSE+KKSK+KEK  SRD
Sbjct: 61  PLAEN---------------SRTKGKEKRVGIDLDSTE-GVKTSSEIKKSKKKEKEKSRD 120

Query: 121 RELDNEVIEKDDEERGFQSRGVVKKNKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTK 180
           RELDN     DD ERGF+S+G +K N++ G  +GSE S + +  ++   SKLG +VKL K
Sbjct: 121 RELDNVD---DDGERGFESQGGLKDNRKKGTALGSETSEKSRGFDR---SKLGENVKLMK 180

Query: 181 EKKKRKRDELEREYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLVTKEGFDDE 240
           E+KKRKRDELEREYEAKKYG S+VAEDEVEGSGG VVGKKRKA+DD SEMLVTKEGFDDE
Sbjct: 181 ERKKRKRDELEREYEAKKYGVSDVAEDEVEGSGGNVVGKKRKALDDPSEMLVTKEGFDDE 240

Query: 241 SKLLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPL--ANSKKPRKGAILSKKVN 300
           SKLLRTVFVGNLPLKVKKKAL KEFSQFGEI+SVRIRSVP+  ANSKKPRKGAI+SKK+N
Sbjct: 241 SKLLRTVFVGNLPLKVKKKALAKEFSQFGEIDSVRIRSVPIDIANSKKPRKGAIISKKLN 300

Query: 301 EDADSSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPPRKKLKVGSSPIYEPKRTV 360
           E ADSSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPP KKLKVG+ PIY+PKRTV
Sbjct: 301 EAADSSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPPHKKLKVGNGPIYDPKRTV 360

Query: 361 FVGNLPFDVKDEELYQLFCGIENVGSNVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVI 420
           FVGNLPFDVKDEELYQLFCGI+ +GS+VEAVRVIRDP VN+GKGFAYVFFKT+EA NSV+
Sbjct: 361 FVGNLPFDVKDEELYQLFCGIDTMGSSVEAVRVIRDPKVNVGKGFAYVFFKTREAVNSVV 420

Query: 421 NNQKLQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRS-AKKRAVDSGLRTPDSSKRAT 480
           NNQKL+LR R LRLFHAK N TSTP KKRN P TE D + AKK AVDSGL TPDSSKR T
Sbjct: 421 NNQKLELRGRTLRLFHAKTNPTSTPFKKRNRPPTEADHTPAKKNAVDSGLGTPDSSKRVT 480

Query: 481 PKATVASYQGLRASKPGSQKKNQAKGSGTKWTKSHSNSKEKRVDYKRRRPEDFPERTSER 540
           PKAT ASYQGLRASK GSQKK   KGS TKW KSHSNSKEK +D+K+R            
Sbjct: 481 PKATNASYQGLRASKSGSQKKIHTKGSSTKWPKSHSNSKEKPIDHKKR------------ 540

Query: 541 KGKRPEKMSERKGKRPAVANRKAVANASRNGVAAPKQGGAKRKSDSRTPESSHRNKRVKR 597
             K PEK SERKGKRPAVANRKAVANA++NG+A PKQ G KRKSDSR+P SSHRNKRVK+
Sbjct: 541 --KGPEKTSERKGKRPAVANRKAVANATKNGIATPKQAGLKRKSDSRSPGSSHRNKRVKK 565

[Close]

BLAST of Cp4.1LG08g08710 vs. TAIR 10
Match: AT5G46840.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 375.2 bits (962), Expect = 1.0e-103
Identity = 265/600 (44.17%), Postives = 351/600 (58.50%), Query Frame = 0


Query: 1   MGKKKT--NGPKSSSEEVAIGSASSSVFETLFGNVGAESDGVSIFSTENPFRRKDTSSTP 60
           MGKKK+    P+S ++E      S ++F TLF      S   S+FS +NPFRRK      
Sbjct: 1   MGKKKSKVTEPESQNDE------SQTIFSTLFSGEVESSGFASLFSADNPFRRKQPQEIK 60

Query: 61  VAAVAEKSPSGGADGHTIDDVKSREKSKEKRVGMDLDSAENGVKSSSEVKKSKRKEKSRD 120
            +++ +                  EK  +KR   + +  E       + KKSK+++K  D
Sbjct: 61  ESSIPD------------------EKKGDKR-NAENEEEEEETDLPVKTKKSKKEKKLTD 120

Query: 121 RELDNEVIEKDDEERGFQSRGVVKKNKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTK 180
              + E I +  EE G                                         L  
Sbjct: 121 SGDEKETISEAVEESG-----------------------------------------LVS 180

Query: 181 EKKKRKRDELEREYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLVTKEGFDDE 240
           ++KKRKRDE+E EYE KKYG+ E+ E +        VG+KRK  D+ ++ +V+KEGFDDE
Sbjct: 181 KRKKRKRDEIENEYETKKYGSVEMKEKK--------VGEKRKKADEVADTMVSKEGFDDE 240

Query: 241 SKLLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNED 300
           SKLLRTVFVGNLPLKVKKK + KEFS+FGE+ESVRIRSVP+ +SK+ RKGAI+ K++NE 
Sbjct: 241 SKLLRTVFVGNLPLKVKKKVILKEFSKFGEVESVRIRSVPIVDSKRTRKGAIMLKQINEK 300

Query: 301 ADSSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPPRKKLK-VGSSPIYEPKRTVF 360
           A S HAYVVF+TE+SA ASL+HNM++  GNH+RVDRACPPRKK K    + +Y+PKRTVF
Sbjct: 301 ASSVHAYVVFETEQSAAASLAHNMSLIDGNHVRVDRACPPRKKQKGHDDTHLYDPKRTVF 360

Query: 361 VGNLPFDVKDEELYQLFCGIENVGSNVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVIN 420
           +GNLPFDVKDEE+YQLF G  N+ +++EAVRVIRDP++NIGKG AYV FKT+EAAN V+ 
Sbjct: 361 MGNLPFDVKDEEVYQLFTGKSNLENSIEAVRVIRDPHLNIGKGIAYVLFKTREAANLVLK 420

Query: 421 NQKLQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRSAKKRAVDSGLRTPDSSKRATPK 480
              L+LR+R LR+   KP+   TP K+++NPS E    A+KR     + TP  + +A   
Sbjct: 421 KGYLKLRERELRISRVKPD---TPSKRKSNPS-EAYSPAQKRLQKDKVVTPTPTGKAN-- 480

Query: 481 ATVASYQGLRASKPGSQKKNQAKGSGTKWTKSHSNSKEKRVDYKRRRPEDFPERTSERKG 540
               SYQG+RASK G  KK       T + KS + +K         RP       +++ G
Sbjct: 481 ---LSYQGVRASKSGDDKK-------TPYQKSSAQTK--------MRPRGSSSNDNKKSG 501

Query: 541 KRPEKMSERKGKRPAVANRKAVANASRNGVAAPKQ-GGAKRKSDSRTPESSHRNKRVKRF 597
                  ER  KRPAVA RKA ANA  +  +  K+  G KRK ++RTPES  + K+ KRF
Sbjct: 541 NN-SASKERSQKRPAVAARKAKANAKGSKESGGKRFAGTKRKQENRTPESFSKKKKTKRF 501

[Close]

BLAST of Cp4.1LG08g08710 vs. TAIR 10
Match: AT5G46840.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 345.9 bits (886), Expect = 6.5e-95
Identity = 208/384 (54.17%), Postives = 267/384 (69.53%), Query Frame = 0


Query: 215 VGKKRKAMDDFSEMLVTKEGFDDESKLLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRI 274
           VG+KRK  D+ ++ +V+KEGFDDESKLLRTVFVGNLPLKVKKK + KEFS+FGE+ESVRI
Sbjct: 6   VGEKRKKADEVADTMVSKEGFDDESKLLRTVFVGNLPLKVKKKVILKEFSKFGEVESVRI 65

Query: 275 RSVPLANSKKPRKGAILSKKVNEDADSSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDR 334
           RSVP+ +SK+ RKGAI+ K++NE A S HAYVVF+TE+SA ASL+HNM++  GNH+RVDR
Sbjct: 66  RSVPIVDSKRTRKGAIMLKQINEKASSVHAYVVFETEQSAAASLAHNMSLIDGNHVRVDR 125

Query: 335 ACPPRKKLK-VGSSPIYEPKRTVFVGNLPFDVKDEELYQLFCGIENVGSNVEAVRVIRDP 394
           ACPPRKK K    + +Y+PKRTVF+GNLPFDVKDEE+YQLF G  N+ +++EAVRVIRDP
Sbjct: 126 ACPPRKKQKGHDDTHLYDPKRTVFMGNLPFDVKDEEVYQLFTGKSNLENSIEAVRVIRDP 185

Query: 395 NVNIGKGFAYVFFKTKEAANSVINNQKLQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVD 454
           ++NIGKG AYV FKT+EAAN V+    L+LR+R LR+   KP+   TP K+++NPS E  
Sbjct: 186 HLNIGKGIAYVLFKTREAANLVLKKGYLKLRERELRISRVKPD---TPSKRKSNPS-EAY 245

Query: 455 RSAKKRAVDSGLRTPDSSKRATPKATVASYQGLRASKPGSQKKNQAKGSGTKWTKSHSNS 514
             A+KR     + TP  + +A       SYQG+RASK G  KK       T + KS + +
Sbjct: 246 SPAQKRLQKDKVVTPTPTGKAN-----LSYQGVRASKSGDDKK-------TPYQKSSAQT 305

Query: 515 KEKRVDYKRRRPEDFPERTSERKGKRPEKMSERKGKRPAVANRKAVANASRNGVAAPKQ- 574
           K         RP       +++ G       ER  KRPAVA RKA ANA  +  +  K+ 
Sbjct: 306 K--------MRPRGSSSNDNKKSGNN-SASKERSQKRPAVAARKAKANAKGSKESGGKRF 364

Query: 575 GGAKRKSDSRTPESSHRNKRVKRF 597
            G KRK ++RTPES  + K+ KRF
Sbjct: 366 AGTKRKQENRTPESFSKKKKTKRF 364

[Close]

BLAST of Cp4.1LG08g08710 vs. TAIR 10
Match: AT2G18510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 64.3 bits (155), Expect = 3.8e-10
Identity = 54/221 (24.43%), Postives = 104/221 (47.06%), Query Frame = 0


Query: 244 TVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDADSSH 303
           TV+VG L  ++ ++ L + F Q G + +V +    + N                    ++
Sbjct: 26  TVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTN-----------------LHQNY 85

Query: 304 AYVVFKTEESAQASLS-HNMAVFAGNHIRVDRACPPRKKLKVGSSPIYEPKRTVFVGNLP 363
            ++ +++EE A  ++   NM    G  IRV++A   +K L VG++        +F+GNL 
Sbjct: 86  GFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQDKKSLDVGAN--------LFIGNLD 145

Query: 364 FDVKDEELYQLFCGIENVGSNVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINNQKLQ 423
            DV ++ LY  F     + SN    +++RDP+    +GF ++ + + EA+++ I +   Q
Sbjct: 146 PDVDEKLLYDTFSAFGVIASN---PKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQ 205

Query: 424 -LRDRALRLFHA-----KPNLTSTPLKK---RNNPSTEVDR 455
            L +R + + +A     K     TP ++     NP+ +  R
Sbjct: 206 YLSNRQITVSYAYKKDTKGERHGTPAERLLAATNPTAQKSR 218

[Close]

BLAST of Cp4.1LG08g08710 vs. TAIR 10
Match: AT4G24770.1 (31-kDa RNA binding protein )

HSP 1 Score: 62.0 bits (149), Expect = 1.9e-09
Identity = 70/246 (28.46%), Postives = 100/246 (40.65%), Query Frame = 0


Query: 189 EREYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLVTKEGFDDESKLLRTVFVG 248
           E E   +    SE  E E + S G  V +  ++  D SE  V++     E      +FVG
Sbjct: 97  ETENSLESQDVSEGDESEGDASEGD-VSEGDESEGDVSEGAVSERAEFPEPSEEAKLFVG 156

Query: 249 NLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDADSSHAY--- 308
           NL   V  +AL   F Q G +E                   I     N + D S  +   
Sbjct: 157 NLAYDVNSQALAMLFEQAGTVE-------------------IAEVIYNRETDQSRGFGFV 216

Query: 309 VVFKTEESAQASLSHNMAVFAGNHIRVDRACPPRKKLKVGSSPIYEPKRTVFVGNLPFDV 368
            +   +E+  A    N     G  + V++A  PR      +  +YEP   V+VGNLP+DV
Sbjct: 217 TMSSVDEAETAVEKFNRYDLNGRLLTVNKAA-PRGSRPERAPRVYEPAFRVYVGNLPWDV 276

Query: 369 KDEELYQLFCGIENVGSNVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINNQKLQ-LR 428
            +  L QLF      G  VEA RV+ D      +GF +V     +  N  I+    Q L 
Sbjct: 277 DNGRLEQLF---SEHGKVVEA-RVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLE 317

Query: 429 DRALRL 431
            RA+R+
Sbjct: 337 GRAIRV 317

[Close]

BLAST of Cp4.1LG08g08710 vs. TAIR 10
Match: AT5G50250.1 (chloroplast RNA-binding protein 31B )

HSP 1 Score: 60.5 bits (145), Expect = 5.4e-09
Identity = 62/216 (28.70%), Postives = 87/216 (40.28%), Query Frame = 0


Query: 205 DEVEGSGGTVVGKKRKAMDDF-SEMLVTKEGFDDESKLLRTVFVGNLPLKVKKKALGKEF 264
           +E EG  G++ G      + F SE  V      +E+KL    FVGNLP  V  +AL   F
Sbjct: 78  EEEEGEDGSIGGTSVTVDESFESEDGVGFPEPPEEAKL----FVGNLPYDVDSQALAMLF 137

Query: 265 SQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDADSSHAY---VVFKTEESAQASLSH 324
            Q G +E                   I     N D D S  +    +   EE+ +A    
Sbjct: 138 EQAGTVE-------------------ISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKF 197

Query: 325 NMAVFAGNHIRVDRACPPRKKLKVGSSPIYEPKRTVFVGNLPFDVKDEELYQLFCGIENV 384
           N     G  + V+RA  PR         +Y+    ++VGNLP+DV    L +LF      
Sbjct: 198 NSFEVNGRRLTVNRAA-PRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLF---SEH 257

Query: 385 GSNVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVI 417
           G  V+A RV+ D      +GF +V    +   N  I
Sbjct: 258 GKVVDA-RVVSDRETGRSRGFGFVQMSNENEVNVAI 265

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g08710 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5M9F1	3.9e-28	35.69	RNA-binding protein 34 OS=Rattus norvegicus OX=10116 GN=Rbm34 PE=1 SV=1	[more]
O13741	9.0e-25	29.97	Nucleolar protein 12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=2...	[more]
Q5AHI7	4.9e-23	28.31	Nucleolar protein 12 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=2375...	[more]
P42696	6.5e-23	30.26	RNA-binding protein 34 OS=Homo sapiens OX=9606 GN=RBM34 PE=1 SV=2	[more]
Q8C5L7	1.3e-20	29.44	RNA-binding protein 34 OS=Mus musculus OX=10090 GN=Rbm34 PE=1 SV=2	[more]

BLAST of Cp4.1LG08g08710 vs. NCBI nr


Match Name	Identity	Description
XP_023540437.1	100.00	nucleolar protein 12 [Cucurbita pepo subsp. pepo]	[more]
XP_022922379.1	97.99	nucleolar protein 12 [Cucurbita moschata]	[more]
KAG7028265.1	97.32	nop12, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6596731.1	97.31	Inositol-tetrakisphosphate 1-kinase 5, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_023005336.1	97.32	nucleolar protein 12 [Cucurbita maxima]	[more]

BLAST of Cp4.1LG08g08710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E378	0.0	97.99	nucleolar protein 12 OS=Cucurbita moschata OX=3662 GN=LOC111430358 PE=4 SV=1	[more]
A0A6J1KUP0	0.0	97.32	nucleolar protein 12 OS=Cucurbita maxima OX=3661 GN=LOC111498364 PE=4 SV=1	[more]
A0A6J1CWE3	1.48e-277	72.54	nucleolar protein 12 OS=Momordica charantia OX=3673 GN=LOC111014841 PE=4 SV=1	[more]
A0A5A7UHL8	1.45e-265	71.93	Nucleolar protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139...	[more]
A0A1S3BK91	2.92e-265	71.76	nucleolar protein 12 OS=Cucumis melo OX=3656 GN=LOC103490769 PE=4 SV=1	[more]

BLAST of Cp4.1LG08g08710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G46840.1	1.0e-103	44.17	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G46840.2	6.5e-95	54.17	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G18510.1	3.8e-10	24.43	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G24770.1	1.9e-09	28.46	31-kDa RNA binding protein	[more]
AT5G50250.1	5.4e-09	28.70	chloroplast RNA-binding protein 31B	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 178..198
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 509..552
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 486..508
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..162
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 434..597
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..149
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 447..466
None	No IPR available	PANTHER	PTHR23236	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H	coord: 177..595
None	No IPR available	PANTHER	PTHR23236:SF25	RNA-BINDING PROTEIN 34	coord: 177..595
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 355..431 e-value: 8.3E-16 score: 68.5 coord: 244..333 e-value: 2.6E-10 score: 50.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 356..428 e-value: 1.4E-10 score: 40.9 coord: 245..285 e-value: 1.2E-5 score: 25.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 354..435 score: 16.261356
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 243..337 score: 13.157274
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 346..440 e-value: 1.6E-19 score: 71.8
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 240..342 e-value: 1.1E-17 score: 65.8
IPR034220	RBM34, RNA recognition motif 1	CDD	cd12394	RRM1_RBM34	coord: 243..333 e-value: 8.37099E-39 score: 135.465
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 238..345
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 349..444

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g08710.1	Cp4.1LG08g08710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding