Cp4.1LG08g08070 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG08g08070
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	BEST Arabidopsis thaliana protein match is: embryo defective 1303 .
Location	Cp4.1LG08: 6481506 .. 6484470 (+)
RNA-Seq Expression	Cp4.1LG08g08070
Synteny	Cp4.1LG08g08070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTTTATGAAGGGGAAATGAACAGGGGTGGGAATTCTCTCCGTAAAATTTTGGCTGGGAATCCAATTGTTCTAAGTAGGGAATTTCTTGGTATGGGGAATGCTTTAGGGCAAAGGGAGGGGACGAGGAAGCCATAGCTATCATTTAATTTCTTATCCTCCTCGAAGACTATGTCTCCATCACGACTCATTTATGAAAATGCAGTAGTGCATTTGAGGGTTTTATGCTCAGTTAAATTGAAACCAAACTAAACTCATGAATGGACTTAGCTTTGGTTTGGTTATATGCCTATTGCTTAGGACCACCATGGATTGACCTAGTGGTCAATAAGAGATCTTGTAAATGATAAGGAACTTAGAGGAAGTAGATGTAAATAGCAAAGGACTTTAAGGGAATAGATGCAAATAGTAAAAGACATAGAGAATAGGTTCAAGACACGGCGGCCAACGACGTAAGGGTTTAATATCCTATGAGTCACTTTGGTAACCAAATCTAAGTGTAGTAGCGTTAGACAGGCATTACGTGAGAATGGTTTAGGTGCACGCGAGTTGGTTTGGACACTCACAAATATTAGCGAAAAAAACAACTCAATGTTCAATTTTAATGGGACTTCAGTTGCTTTCAGTTCAACATAACTGAATCATACCAATAAACACGTTGCATTCTGGAAAATTTTATGGACTTCTGTTCTTTAAAGTGCATAAAAAAGAGTCCACCAAATCCATAGATAAATGTTTTTATGCCGTTTTATCATTTTATTCCTATTGTCATGTTCTTAATACATTCAGTCTTATGGGTTGCAACATGTAATCAGAAAATTCAATCATTCTCATTTTATTGGTGCTTTCATCTCAGAAATTCTTGTTTACAGTGTCAGGTTATCATCGACCTTCGAAGATGGAGATGCTTACTACAAATTCTGGTGCCATGCTTCCTCTTCTACCTCCAGGTACAAGCAACTAATTTCCAAATCGTTTTACTTATTTGATGTAAGTGGAAATGAATGGATTTTAATTATCATAAAAAAGGATGAGTACAAGAGAAAAAAAACTGGATAAGGGATATCCCCTACCTCAGAAAGGAACTTGTAAGAATCAACCCATCTAATTTGATTCCAGAAGCTAGATAATTTAGAATTACTATTATAGTACTCCAACATGAGGGGCTGTAGTGTGTACAATTCAAGAAATTGACCAAAGTTCTAAAGATACATTGAAGGATTCTGTTGTTCTTTTCAATCTAAAGTTGCATATAATGGTTTTGGAAGGATTTCCTAGAAGAAATCTACCTTTTTCAGCCACCAGCCATCAAAAACTTCTGAAATCAGATATCTCACATCCTTCAGGAAGCTCCGAGAATCCTAAATTTGACATGATTAAAATTCCAGCTTTTAGTGGCAGCTCAGTAGAGAAAGCGATGTTCTATATTGTGGAAAGTTCTTTGTGGTTCCCTTCTTCCTAATCAAGTTGGCCATGTTGATCACTGAGGTTGGGGTTAGCAAATAAGATCTGACTTGCAATAGTATGTCCCCAAATTATCAAATTTCCGAATGGAAAGAGATGTTATATGCTCTCATACTAATATCTACCTTGGGTTATTAAGTTTGGAAACTTAATTTTGCTGGTATAGGGAATTCAAGCAATCTGATTGTTGAGATAACATTTCTCAGGCTAAGAAATGAAACTAATTAGCTTATGTTTTGAATTTGAAGATCATTTATGTTTACATTGGTTTTCTTATTCAGTTAAAAAGTGGATTCTCGTTTAAATTATTGTTCCAACTTTTTGATATTTAGTTGTAATATTGTTATTGTAAAACAGTGGGTCAGCATTGGGGAAGAATGGAAGCCATGAACTTCCATCTTAGTAGGGATAGTTTCCAAGTTCAAACTTCTAATGGGAGGAGACAACCGGTGATTGCTAAAGCAGGACCACTTTATGTCAAACCAATTCTATCTACTGGGACAAGGGGAGGTGTTCTATATTCAAGTAGAAAGAACAACGCTTTCGTATGTTTTGCTGCTTTGGTAAGTTGGTTCTTGTTCTATATGTGTACTTTTAATGCTTGTTTATTTTCTTTTGGTATTTAGTTGGTAATAACTTTTTTTTGGTTAGAAACATAAACATGAAATGTACAGCCTTAAGCGTAGATGCCAAAGGAGATTATCAAAAGTCTTCCCAACTTGTTGGAACGAGTTGGGGGACTTCTCTGGAAAGCAATCATCAAAGTTTTAGTGGGGGTGAGAGATATGCGGAGGGGTTGTGATAGGTTATTTTATTAGGTTTAATATATTGGTTTGGGTCGTTGATGTATATTATATGATTGATGTCTCTTGGTTCATATCACTTTTTGCATATCAGTTTTTGTTAACTAAACAAATAGTCAAAAAGAAATTGATTTACAGAATATTTGAAAGAGGGATGAAAAAAAATATATATATATTTAATGGTGCTGTTCCTCTGCAGAATGCTAGATGTGCGGCGGAGCAGACCCAAACTGTTACAAGAGAGGCTCCTACAATCACTGTTCTTCCTGGTAATGCAGATTTTATGAATAATATAGTAACTGCTAACATCAATATTCCTAGCACTAATCTTTTACACCTTGAAAATAACTTGCATCACTATGTTCTTAACATTTTGTTGTCTCCCTCGCACACATGCACACATGCACACATGATGTTGTCATAGGCTGTCATAATTATGGCTGTTGCTTACCCTTATTTTTAAACCATACGTTGGATTACCTAAAACTAAAATTGCAGGCAAGGAGAAGTCGCCGCAACTGGATGATGGTGATTCTGGGTTTCCACCTCGTGATGATGGTGATGGCGGCGGCGGTGGCGGTGGAGGGGGTGGCAACTGGTCTGGTGGATTCTTCTTCTTTGGCTTCCTTGCTTTCCTAGGCTTCTTAAAAGATAAAGAAAGCGAAGAGCCTTATCAGAATGACCGGAGAAGATAA

mRNA sequence

ATGGATGTTTATGAAGGGGAAATGAACAGGGGTGGGAATTCTCTCCGTAAAATTTTGGCTGGGAATCCAATTGTTCTAAGTAGGGAATTTCTTGTGTCAGGTTATCATCGACCTTCGAAGATGGAGATGCTTACTACAAATTCTGGTGCCATGCTTCCTCTTCTACCTCCAGTGGGTCAGCATTGGGGAAGAATGGAAGCCATGAACTTCCATCTTAGTAGGGATAGTTTCCAAGTTCAAACTTCTAATGGGAGGAGACAACCGGTGATTGCTAAAGCAGGACCACTTTATGTCAAACCAATTCTATCTACTGGGACAAGGGGAGGTGTTCTATATTCAAGTAGAAAGAACAACGCTTTCGTATGTTTTGCTGCTTTGAATGCTAGATGTGCGGCGGAGCAGACCCAAACTGTTACAAGAGAGGCTCCTACAATCACTGTTCTTCCTGGCAAGGAGAAGTCGCCGCAACTGGATGATGGTGATTCTGGGTTTCCACCTCGTGATGATGGTGATGGCGGCGGCGGTGGCGGTGGAGGGGGTGGCAACTGGTCTGGTGGATTCTTCTTCTTTGGCTTCCTTGCTTTCCTAGGCTTCTTAAAAGATAAAGAAAGCGAAGAGCCTTATCAGAATGACCGGAGAAGATAA

Coding sequence (CDS)

ATGGATGTTTATGAAGGGGAAATGAACAGGGGTGGGAATTCTCTCCGTAAAATTTTGGCTGGGAATCCAATTGTTCTAAGTAGGGAATTTCTTGTGTCAGGTTATCATCGACCTTCGAAGATGGAGATGCTTACTACAAATTCTGGTGCCATGCTTCCTCTTCTACCTCCAGTGGGTCAGCATTGGGGAAGAATGGAAGCCATGAACTTCCATCTTAGTAGGGATAGTTTCCAAGTTCAAACTTCTAATGGGAGGAGACAACCGGTGATTGCTAAAGCAGGACCACTTTATGTCAAACCAATTCTATCTACTGGGACAAGGGGAGGTGTTCTATATTCAAGTAGAAAGAACAACGCTTTCGTATGTTTTGCTGCTTTGAATGCTAGATGTGCGGCGGAGCAGACCCAAACTGTTACAAGAGAGGCTCCTACAATCACTGTTCTTCCTGGCAAGGAGAAGTCGCCGCAACTGGATGATGGTGATTCTGGGTTTCCACCTCGTGATGATGGTGATGGCGGCGGCGGTGGCGGTGGAGGGGGTGGCAACTGGTCTGGTGGATTCTTCTTCTTTGGCTTCCTTGCTTTCCTAGGCTTCTTAAAAGATAAAGAAAGCGAAGAGCCTTATCAGAATGACCGGAGAAGATAA

Protein sequence

MDVYEGEMNRGGNSLRKILAGNPIVLSREFLVSGYHRPSKMEMLTTNSGAMLPLLPPVGQHWGRMEAMNFHLSRDSFQVQTSNGRRQPVIAKAGPLYVKPILSTGTRGGVLYSSRKNNAFVCFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEEPYQNDRRR

Homology

[Close]

BLAST of Cp4.1LG08g08070 vs. ExPASy Swiss-Prot
Match: Q0E3V2 (Protein YELLOW LEAF 1, choloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=YL1 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-08
Identity = 44/99 (44.44%), Postives = 56/99 (56.57%), Query Frame = 0


Query: 122 CFAALNARCAAEQTQTVTRE------APTITVLPGKEKSPQLDDGDSGFPPRDDGDGGGG 181
           C A++   C A QTQT  R+      +P    +  K +SP+LDDG +GFPP   G GGGG
Sbjct: 58  CEASMRITCCANQTQTARRKSFSGPTSPPSGSVKEKVRSPKLDDGGTGFPPFRFGGGGGG 117

Query: 182 GGGGGGNWSGGFFFFGFLAFLGFLKDKESEEPYQNDRRR 215
           GGGGG N +GGF  F  +  L +L  +E E   QN  RR
Sbjct: 118 GGGGGSNSAGGFILFVIVLLLDYL--REFERNLQNGTRR 154

[Close]

BLAST of Cp4.1LG08g08070 vs. ExPASy Swiss-Prot
Match: F1SZ44 (Protein FERTILITY RESTORER RF2, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=RF2 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.1e-08
Identity = 41/83 (49.40%), Postives = 51/83 (61.45%), Query Frame = 0


Query: 127 NARCAAEQTQTVTREAPTITVL----PGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGG- 186
           + RC A QTQ+  R++ T TV      GK + P+LDDG  GFPP   G GGGGGGGGGG 
Sbjct: 49  SVRCNATQTQSAQRKSSTATVKRSDPKGKTQGPKLDDGSGGFPPFRFGKGGGGGGGGGGG 108

Query: 187 -NWSGGFFFFGFLAFLGFLKDKE 204
            N+ GGF  F  +  L +LK+ E
Sbjct: 109 SNYFGGFLLFTCVLLLDYLKEFE 131

[Close]

BLAST of Cp4.1LG08g08070 vs. ExPASy Swiss-Prot
Match: F1SZ42 (Protein FERTILITY RESTORER RF2, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=RF2 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.0e-07
Identity = 41/83 (49.40%), Postives = 51/83 (61.45%), Query Frame = 0


Query: 127 NARCAAEQTQTVTREAPTITVL----PGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGG- 186
           + RC A QTQ+  R++ T TV      GK + P+LDDG  GFPP   G GGGGGGGGGG 
Sbjct: 49  SVRCNATQTQSAQRKSSTATVKRSDPKGKIQGPKLDDGSGGFPPFRFGKGGGGGGGGGGG 108

Query: 187 -NWSGGFFFFGFLAFLGFLKDKE 204
            N+ GGF  F  +  L +LK+ E
Sbjct: 109 SNYFGGFLLFTCVLLLDYLKEFE 131

[Close]

BLAST of Cp4.1LG08g08070 vs. ExPASy Swiss-Prot
Match: F1SZ41 (Protein FERTILITY RESTORER RF2, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=RF2 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.0e-07
Identity = 41/83 (49.40%), Postives = 51/83 (61.45%), Query Frame = 0


Query: 127 NARCAAEQTQTVTREAPTITVL----PGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGG- 186
           + RC A QTQ+  R++ T TV      GK + P+LDDG  GFPP   G GGGGGGGGGG 
Sbjct: 49  SVRCNATQTQSAQRKSSTATVKRSDPKGKIQGPKLDDGSGGFPPFRFGKGGGGGGGGGGG 108

Query: 187 -NWSGGFFFFGFLAFLGFLKDKE 204
            N+ GGF  F  +  L +LK+ E
Sbjct: 109 SNYFGGFLLFTCVLLLDYLKEFE 131

[Close]

BLAST of Cp4.1LG08g08070 vs. NCBI nr
Match: XP_023540533.1 (uncharacterized protein LOC111800870 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 347 bits (891), Expect = 6.97e-120
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 41  MEMLTTNSGAMLPLLPPVGQHWGRMEAMNFHLSRDSFQVQTSNGRRQPVIAKAGPLYVKP 100
           MEMLTTNSGAMLPLLPPVGQHWGRMEAMNFHLSRDSFQVQTSNGRRQPVIAKAGPLYVKP
Sbjct: 1   MEMLTTNSGAMLPLLPPVGQHWGRMEAMNFHLSRDSFQVQTSNGRRQPVIAKAGPLYVKP 60

Query: 101 ILSTGTRGGVLYSSRKNNAFVCFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDG 160
           ILSTGTRGGVLYSSRKNNAFVCFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDG
Sbjct: 61  ILSTGTRGGVLYSSRKNNAFVCFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDG 120

Query: 161 DSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEEPYQNDRRR 214
           DSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEEPYQNDRRR
Sbjct: 121 DSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEEPYQNDRRR 174

[Close]

BLAST of Cp4.1LG08g08070 vs. NCBI nr
Match: XP_023005574.1 (uncharacterized protein LOC111498519 isoform X1 [Cucurbita maxima] >XP_023005575.1 uncharacterized protein LOC111498519 isoform X1 [Cucurbita maxima] >XP_023005577.1 uncharacterized protein LOC111498519 isoform X2 [Cucurbita maxima])

HSP 1 Score: 340 bits (871), Expect = 7.79e-117
Identity = 169/174 (97.13%), Postives = 173/174 (99.43%), Query Frame = 0


Query: 41  MEMLTTNSGAMLPLLPPVGQHWGRMEAMNFHLSRDSFQVQTSNGRRQPVIAKAGPLYVKP 100
           MEMLTTNSGAMLPLLPPVGQHWGRM+A+NFHLSRDSFQV+TSNGRRQPVIAKAGPLYVKP
Sbjct: 1   MEMLTTNSGAMLPLLPPVGQHWGRMKAINFHLSRDSFQVKTSNGRRQPVIAKAGPLYVKP 60

Query: 101 ILSTGTRGGVLYSSRKNNAFVCFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDG 160
           ILSTGT GGVLYSSRKNNAF+CFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDG
Sbjct: 61  ILSTGTGGGVLYSSRKNNAFICFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDG 120

Query: 161 DSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEEPYQNDRRR 214
           DSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEEPYQNDRRR
Sbjct: 121 DSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEEPYQNDRRR 174

[Close]

BLAST of Cp4.1LG08g08070 vs. NCBI nr
Match: KAG6596785.1 (Protein YELLOW LEAF 1, choloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 335 bits (858), Expect = 7.46e-115
Identity = 167/174 (95.98%), Postives = 171/174 (98.28%), Query Frame = 0


Query: 41  MEMLTTNSGAMLPLLPPVGQHWGRMEAMNFHLSRDSFQVQTSNGRRQPVIAKAGPLYVKP 100
           MEMLTT SGAML LLPPVGQHWGRM+A+NFHLSRDSFQV+TSNGRRQPVIAKAGPLYVKP
Sbjct: 1   MEMLTTTSGAMLSLLPPVGQHWGRMKAINFHLSRDSFQVRTSNGRRQPVIAKAGPLYVKP 60

Query: 101 ILSTGTRGGVLYSSRKNNAFVCFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDG 160
           ILSTG RGGVLYSSRKNNAF+CFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDG
Sbjct: 61  ILSTGKRGGVLYSSRKNNAFICFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDG 120

Query: 161 DSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEEPYQNDRRR 214
           DSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEEPYQNDRRR
Sbjct: 121 DSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEEPYQNDRRR 174

[Close]

BLAST of Cp4.1LG08g08070 vs. NCBI nr
Match: XP_022949842.1 (uncharacterized protein LOC111453117 [Cucurbita moschata] >XP_022949851.1 uncharacterized protein LOC111453117 [Cucurbita moschata])

HSP 1 Score: 332 bits (851), Expect = 8.70e-114
Identity = 166/174 (95.40%), Postives = 170/174 (97.70%), Query Frame = 0


Query: 41  MEMLTTNSGAMLPLLPPVGQHWGRMEAMNFHLSRDSFQVQTSNGRRQPVIAKAGPLYVKP 100
           MEMLTT SGAML LLPPVGQHWGRM+A+NFHLS DSFQV+TSNGRRQPVIAKAGPLYVKP
Sbjct: 1   MEMLTTTSGAMLSLLPPVGQHWGRMKAINFHLSGDSFQVRTSNGRRQPVIAKAGPLYVKP 60

Query: 101 ILSTGTRGGVLYSSRKNNAFVCFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDG 160
           ILSTG RGGVLYSSRKNNAF+CFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDG
Sbjct: 61  ILSTGKRGGVLYSSRKNNAFICFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDG 120

Query: 161 DSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEEPYQNDRRR 214
           DSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEEPYQNDRRR
Sbjct: 121 DSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEEPYQNDRRR 174

[Close]

BLAST of Cp4.1LG08g08070 vs. NCBI nr
Match: KAG7028313.1 (hypothetical protein SDJN02_09494 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 330 bits (846), Expect = 5.21e-113
Identity = 167/175 (95.43%), Postives = 171/175 (97.71%), Query Frame = 0


Query: 41  MEMLTTNSGAMLPLLPPVGQHWGRMEAMNFHLSRDSFQVQTSNGRRQPVIAKAGPLYVKP 100
           MEMLTT SGAML LLPPVGQHWGRM+A+NFHLSRDSFQV+TSNGRRQPVIAKAGPLYVKP
Sbjct: 1   MEMLTTTSGAMLSLLPPVGQHWGRMKAINFHLSRDSFQVRTSNGRRQPVIAKAGPLYVKP 60

Query: 101 ILSTGTRGGVLYSSRKNNAFVCFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDG 160
           ILSTG RGGVLYSSRKNNAF+CFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDG
Sbjct: 61  ILSTGKRGGVLYSSRKNNAFICFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDG 120

Query: 161 DSGFPPRDDGDGGGGGGGGGG-NWSGGFFFFGFLAFLGFLKDKESEEPYQNDRRR 214
           DSGFPPRDDGDGGGGGGGGGG NWSGGFFFFGFLAFLGFLKDKESEEPYQNDRRR
Sbjct: 121 DSGFPPRDDGDGGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEEPYQNDRRR 175

[Close]

BLAST of Cp4.1LG08g08070 vs. ExPASy TrEMBL
Match: A0A6J1KZM4 (uncharacterized protein LOC111498519 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498519 PE=4 SV=1)

HSP 1 Score: 340 bits (871), Expect = 3.77e-117
Identity = 169/174 (97.13%), Postives = 173/174 (99.43%), Query Frame = 0


Query: 41  MEMLTTNSGAMLPLLPPVGQHWGRMEAMNFHLSRDSFQVQTSNGRRQPVIAKAGPLYVKP 100
           MEMLTTNSGAMLPLLPPVGQHWGRM+A+NFHLSRDSFQV+TSNGRRQPVIAKAGPLYVKP
Sbjct: 1   MEMLTTNSGAMLPLLPPVGQHWGRMKAINFHLSRDSFQVKTSNGRRQPVIAKAGPLYVKP 60

Query: 101 ILSTGTRGGVLYSSRKNNAFVCFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDG 160
           ILSTGT GGVLYSSRKNNAF+CFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDG
Sbjct: 61  ILSTGTGGGVLYSSRKNNAFICFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDG 120

Query: 161 DSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEEPYQNDRRR 214
           DSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEEPYQNDRRR
Sbjct: 121 DSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEEPYQNDRRR 174

[Close]

BLAST of Cp4.1LG08g08070 vs. ExPASy TrEMBL
Match: A0A6J1GD79 (uncharacterized protein LOC111453117 OS=Cucurbita moschata OX=3662 GN=LOC111453117 PE=4 SV=1)

HSP 1 Score: 332 bits (851), Expect = 4.21e-114
Identity = 166/174 (95.40%), Postives = 170/174 (97.70%), Query Frame = 0


Query: 41  MEMLTTNSGAMLPLLPPVGQHWGRMEAMNFHLSRDSFQVQTSNGRRQPVIAKAGPLYVKP 100
           MEMLTT SGAML LLPPVGQHWGRM+A+NFHLS DSFQV+TSNGRRQPVIAKAGPLYVKP
Sbjct: 1   MEMLTTTSGAMLSLLPPVGQHWGRMKAINFHLSGDSFQVRTSNGRRQPVIAKAGPLYVKP 60

Query: 101 ILSTGTRGGVLYSSRKNNAFVCFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDG 160
           ILSTG RGGVLYSSRKNNAF+CFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDG
Sbjct: 61  ILSTGKRGGVLYSSRKNNAFICFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDG 120

Query: 161 DSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEEPYQNDRRR 214
           DSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEEPYQNDRRR
Sbjct: 121 DSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEEPYQNDRRR 174

[Close]

BLAST of Cp4.1LG08g08070 vs. ExPASy TrEMBL
Match: A0A6J1CP11 (uncharacterized protein LOC111013392 OS=Momordica charantia OX=3673 GN=LOC111013392 PE=4 SV=1)

HSP 1 Score: 305 bits (780), Expect = 2.77e-103
Identity = 153/174 (87.93%), Postives = 159/174 (91.38%), Query Frame = 0


Query: 41  MEMLTTNSGAMLPLLPPVGQHWGRMEAMNFHLSRDSFQVQTSNGRRQPVIAKAGPLYVKP 100
           MEMLTTNSGAMLPLLPPVG+HWGR +A NFHL RDSFQ+Q  NGR Q V+AK GPL++KP
Sbjct: 1   MEMLTTNSGAMLPLLPPVGRHWGRTKAKNFHLGRDSFQLQPLNGRIQQVVAKVGPLFLKP 60

Query: 101 ILSTGTRGGVLYSSRKNNAFVCFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDG 160
           I S GTR  VLYSSRK NAF CFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDG
Sbjct: 61  IPSIGTRESVLYSSRKTNAFTCFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDG 120

Query: 161 DSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEEPYQNDRRR 214
           DSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESE PYQNDRRR
Sbjct: 121 DSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQNDRRR 174

[Close]

BLAST of Cp4.1LG08g08070 vs. ExPASy TrEMBL
Match: A0A6J1HQC3 (uncharacterized protein LOC111465127 OS=Cucurbita maxima OX=3661 GN=LOC111465127 PE=4 SV=1)

HSP 1 Score: 296 bits (758), Expect = 6.43e-100
Identity = 150/175 (85.71%), Postives = 162/175 (92.57%), Query Frame = 0


Query: 41  MEMLTTNSGAMLPLLPPVGQHWGRMEAMNFHLSRDSFQVQTSNGRRQPVIAKAGPLYVKP 100
           MEMLTTNSGAML LLPPVGQHWG+M+  +F L RDS Q+QT NGRRQ VIAKAGP+++KP
Sbjct: 1   MEMLTTNSGAMLTLLPPVGQHWGKMKVKDFLLRRDSVQLQTPNGRRQSVIAKAGPVFLKP 60

Query: 101 ILSTGTRGGVLYSSRKNN-AFVCFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDD 160
           I STGT+GG LYS+RKNN AF+CFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDD
Sbjct: 61  IPSTGTKGGFLYSTRKNNNAFICFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDD 120

Query: 161 GDSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEEPYQNDRRR 214
           GDSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESE  Y++DRRR
Sbjct: 121 GDSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGSYEDDRRR 175

[Close]

BLAST of Cp4.1LG08g08070 vs. ExPASy TrEMBL
Match: A0A6J1F258 (uncharacterized protein LOC111438781 OS=Cucurbita moschata OX=3662 GN=LOC111438781 PE=4 SV=1)

HSP 1 Score: 296 bits (758), Expect = 6.43e-100
Identity = 150/175 (85.71%), Postives = 163/175 (93.14%), Query Frame = 0


Query: 41  MEMLTTNSGAMLPLLPPVGQHWGRMEAMNFHLSRDSFQVQTSNGRRQPVIAKAGPLYVKP 100
           MEMLTT+SGAML LLPPVGQHWG+M+  +F L RDS Q+QT NGRRQ VIAKAGP+++KP
Sbjct: 1   MEMLTTSSGAMLTLLPPVGQHWGKMKGKDFLLRRDSVQLQTPNGRRQSVIAKAGPVFLKP 60

Query: 101 ILSTGTRGGVLYSSRKNN-AFVCFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDD 160
           I STGT+GGVLYS+RKNN AF+CFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDD
Sbjct: 61  IPSTGTKGGVLYSTRKNNNAFICFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDD 120

Query: 161 GDSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEEPYQNDRRR 214
           GDSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESE  Y++DRRR
Sbjct: 121 GDSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGAYEDDRRR 175

[Close]

BLAST of Cp4.1LG08g08070 vs. TAIR 10
Match: AT1G56200.1 (embryo defective 1303 )

HSP 1 Score: 143.7 bits (361), Expect = 1.8e-34
Identity = 78/119 (65.55%), Postives = 90/119 (75.63%), Query Frame = 0


Query: 98  VKPILSTGTRGGVLYSSRKNNAFVCFAALNARCAAEQTQTVTREAPTITVLP--GKEKSP 157
           V P+ + G   G+   SR+ +  +C +A+NA+C+  QTQTVTRE+PTIT  P   KEKSP
Sbjct: 39  VSPLSAVGLSSGL--GSRRKSLLICHSAINAKCSEGQTQTVTRESPTITQAPVHSKEKSP 98

Query: 158 QLDDGDSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEEPYQNDRRR 215
            LDDG  GFPPRDDGD GGGGGGGGGNWSGGFFFFGFLAFLG LKDKE EE Y+  RRR
Sbjct: 99  SLDDGGDGFPPRDDGD-GGGGGGGGGNWSGGFFFFGFLAFLGLLKDKEGEEDYRGSRRR 154

[Close]

BLAST of Cp4.1LG08g08070 vs. TAIR 10
Match: AT1G56200.2 (embryo defective 1303 )

HSP 1 Score: 143.7 bits (361), Expect = 1.8e-34
Identity = 78/119 (65.55%), Postives = 90/119 (75.63%), Query Frame = 0


Query: 98  VKPILSTGTRGGVLYSSRKNNAFVCFAALNARCAAEQTQTVTREAPTITVLP--GKEKSP 157
           V P+ + G   G+   SR+ +  +C +A+NA+C+  QTQTVTRE+PTIT  P   KEKSP
Sbjct: 36  VSPLSAVGLSSGL--GSRRKSLLICHSAINAKCSEGQTQTVTRESPTITQAPVHSKEKSP 95

Query: 158 QLDDGDSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEEPYQNDRRR 215
            LDDG  GFPPRDDGD GGGGGGGGGNWSGGFFFFGFLAFLG LKDKE EE Y+  RRR
Sbjct: 96  SLDDGGDGFPPRDDGD-GGGGGGGGGNWSGGFFFFGFLAFLGLLKDKEGEEDYRGSRRR 151

[Close]

BLAST of Cp4.1LG08g08070 vs. TAIR 10
Match: AT1G30475.1 (BEST Arabidopsis thaliana protein match is: embryo defective 1303 (TAIR:AT1G56200.1); Has 148 Blast hits to 148 proteins in 34 species: Archae - 0; Bacteria - 14; Metazoa - 63; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). )

HSP 1 Score: 114.0 bits (284), Expect = 1.5e-25
Identity = 64/98 (65.31%), Postives = 76/98 (77.55%), Query Frame = 0


Query: 110 VLYSSRKNNAFVCFAALNARCAAEQTQTVTREAPTITVLP--GKEKSPQLDDGDSGFPPR 169
           V+ S  K   F C +ALN++C+  QTQTVTR++PTIT  P  GK KSP+LDDG +GFPPR
Sbjct: 90  VVVSKNKRPVFACNSALNSKCSQGQTQTVTRQSPTITQAPTHGKVKSPKLDDGGNGFPPR 149

Query: 170 DDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESE 206
           DDG GGGGGGGGGG+ SGGFF FGFL F+G+LKD E E
Sbjct: 150 DDG-GGGGGGGGGGSSSGGFFLFGFLLFMGYLKDLEGE 186

[Close]

BLAST of Cp4.1LG08g08070 vs. TAIR 10
Match: AT1G30475.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: embryo defective 1303 (TAIR:AT1G56200.1); Has 142 Blast hits to 142 proteins in 33 species: Archae - 0; Bacteria - 14; Metazoa - 57; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). )

HSP 1 Score: 114.0 bits (284), Expect = 1.5e-25
Identity = 64/98 (65.31%), Postives = 76/98 (77.55%), Query Frame = 0


Query: 110 VLYSSRKNNAFVCFAALNARCAAEQTQTVTREAPTITVLP--GKEKSPQLDDGDSGFPPR 169
           V+ S  K   F C +ALN++C+  QTQTVTR++PTIT  P  GK KSP+LDDG +GFPPR
Sbjct: 61  VVVSKNKRPVFACNSALNSKCSQGQTQTVTRQSPTITQAPTHGKVKSPKLDDGGNGFPPR 120

Query: 170 DDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESE 206
           DDG GGGGGGGGGG+ SGGFF FGFL F+G+LKD E E
Sbjct: 121 DDG-GGGGGGGGGGSSSGGFFLFGFLLFMGYLKDLEGE 157

[Close]

BLAST of Cp4.1LG08g08070 vs. TAIR 10
Match: AT1G30475.3 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: embryo defective 1303 (TAIR:AT1G56200.1); Has 142 Blast hits to 142 proteins in 33 species: Archae - 0; Bacteria - 14; Metazoa - 57; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). )

HSP 1 Score: 114.0 bits (284), Expect = 1.5e-25
Identity = 64/98 (65.31%), Postives = 76/98 (77.55%), Query Frame = 0


Query: 110 VLYSSRKNNAFVCFAALNARCAAEQTQTVTREAPTITVLP--GKEKSPQLDDGDSGFPPR 169
           V+ S  K   F C +ALN++C+  QTQTVTR++PTIT  P  GK KSP+LDDG +GFPPR
Sbjct: 61  VVVSKNKRPVFACNSALNSKCSQGQTQTVTRQSPTITQAPTHGKVKSPKLDDGGNGFPPR 120

Query: 170 DDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESE 206
           DDG GGGGGGGGGG+ SGGFF FGFL F+G+LKD E E
Sbjct: 121 DDG-GGGGGGGGGGSSSGGFFLFGFLLFMGYLKDLEGE 157

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g08070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0E3V2	1.2e-08	44.44	Protein YELLOW LEAF 1, choloroplastic OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
F1SZ44	6.1e-08	49.40	Protein FERTILITY RESTORER RF2, mitochondrial OS=Oryza sativa subsp. japonica OX...	[more]
F1SZ42	1.0e-07	49.40	Protein FERTILITY RESTORER RF2, mitochondrial OS=Oryza sativa subsp. japonica OX...	[more]
F1SZ41	1.0e-07	49.40	Protein FERTILITY RESTORER RF2, mitochondrial OS=Oryza sativa subsp. indica OX=3...	[more]

BLAST of Cp4.1LG08g08070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023540533.1	6.97e-120	100.00	uncharacterized protein LOC111800870 [Cucurbita pepo subsp. pepo]	[more]
XP_023005574.1	7.79e-117	97.13	uncharacterized protein LOC111498519 isoform X1 [Cucurbita maxima] >XP_023005575...	[more]
KAG6596785.1	7.46e-115	95.98	Protein YELLOW LEAF 1, choloroplastic, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_022949842.1	8.70e-114	95.40	uncharacterized protein LOC111453117 [Cucurbita moschata] >XP_022949851.1 unchar...	[more]
KAG7028313.1	5.21e-113	95.43	hypothetical protein SDJN02_09494 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Cp4.1LG08g08070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KZM4	3.77e-117	97.13	uncharacterized protein LOC111498519 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1GD79	4.21e-114	95.40	uncharacterized protein LOC111453117 OS=Cucurbita moschata OX=3662 GN=LOC1114531...	[more]
A0A6J1CP11	2.77e-103	87.93	uncharacterized protein LOC111013392 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1HQC3	6.43e-100	85.71	uncharacterized protein LOC111465127 OS=Cucurbita maxima OX=3661 GN=LOC111465127...	[more]
A0A6J1F258	6.43e-100	85.71	uncharacterized protein LOC111438781 OS=Cucurbita moschata OX=3662 GN=LOC1114387...	[more]

BLAST of Cp4.1LG08g08070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G56200.1	1.8e-34	65.55	embryo defective 1303	[more]
AT1G56200.2	1.8e-34	65.55	embryo defective 1303	[more]
AT1G30475.1	1.5e-25	65.31	BEST Arabidopsis thaliana protein match is: embryo defective 1303 (TAIR:AT1G5620...	[more]
AT1G30475.2	1.5e-25	65.31	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G30475.3	1.5e-25	65.31	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 135..180
None	No IPR available	PANTHER	PTHR34938:SF1	PROTEIN FERTILITY RESTORER RF2, MITOCHONDRIAL	coord: 105..213
IPR040299	Protein FERTILITY RESTORER RF2-like	PANTHER	PTHR34938	PROTEIN FERTILITY RESTORER RF2, MITOCHONDRIAL	coord: 105..213

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g08070.1	Cp4.1LG08g08070.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0010027	thylakoid membrane organization
cellular_component	GO:0009507	chloroplast