Cp4.1LG08g07470 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG08g07470
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	tRNA_edit domain-containing protein
Location	Cp4.1LG08: 5927944 .. 5930599 (-)
RNA-Seq Expression	Cp4.1LG08g07470
Synteny	Cp4.1LG08g07470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAAAATTGTCAAAAAGAAAGAAGGAAACTGCATTCATCCGAATTGGCCAATGGGGACCGAGGCTGGAGCAATGGCAGAGCGAAACTCCATGGAAGCACTAGCGAAGCTCGAATATCGCCAGACCCTAATCATCAATCGAATTTTGAAGCTGGAGCTCGCTTATCTTCCAAATCTCGACTCGGAACCTTCTCCAATTTCCTCTGATGAGGCAGATGGCGACACTGTGTCTCGACTCTCCACCATTCTTCGAACCAACGCTGTCAATGACTTCTCCTTCAAGAGGGTTCCCTCTGATTACTACGATTGGTCTCTCGAAGCCCGACGGGACGTTCTTAATGCCGCTTCGGTTGACCATCTCTGCAAGAGCATTGTTCTGGTGCGTTTTGGAATCGGATTCTTTTTTTTGCAATTTCGATATGTGATTTTGTATTGACGATTTCGAGTGCGTATGTTGATTCCTTTTAGGCCTTTTTCATTAGTTACTTTTGGGTTTGAAGGAATGGGTAGAATTGGATTAATGAGAGGAAATGTTTGGATCGAATGATGGCGTTTATTAAAATGCCTCTCTTCCTGAAAAAATTATTTCAGGGTGGAACAGTATGGCCAATGATTTTGCACCATTTGAAACTTATTGGATGCGAGAGAACTAAAAAATGTATTTCAAATCTTTATTGAATGGTTATTAGAGGTAGACATTTTGAACCTGAATTCAACGGTCATTAGAGAGCAGTCAGTGGCTTATTCGTTGAATCTAGTCTTTTTTTTTCCCTTCCTGAGTTATAACACTGTTGGGGAGGGACAAACATTTTCAGCTAGTTGAAAATTAAAATGAATTGAACCAAGCATTTATGTTGTGCTTTATTCAAGTCCTTATGTAATCATACTTCCAATGTAATTAGTACTAGTTGAGATTCTAGTTTTCTGTAATGAAAATGACATCGCATTACATTACATTGTGATCATATATGCTCTCGAGAATTCCTATGTTTTATGCTGGGTTGCTTGAGACCATCTCTTTGGTGGCAAACACGGGGCTTTTTGATAGCATCATGGGATCTTTGTGAAAAGCTTTGGTGTTGAAGGAGGATTTGAGATGGAACTGAACTATATTTGTATGATTTTCTCGGAGCTTGTGCATTTTGTAGTTTTTTTTTACTCTTATATATAATTTTTTTCTGTGCTAATCGGAGAGTGTGTTACATTCTTGAAAGGTTTCTATTCATCCTTATGTTAAATGGATTGATTTGGGAAATTTTCATAAAAGAACCAAATAATTCTTACAATACACAAGTATTTTCAGCTTCCAAATAGTTCTCGGCTTAGGCGTTCAAGGATTTTACTTTTAACAAAGTAAAATTTCTCATCAACACTTGAAAGGAAGAGAAAGGAGGGAAAGAAAAGGCCTTACTTTGTTCCTTTTGCATATATGTTGATATAATTTGACAATTGTTAGATGTATGACTGCCAGTTTAAAGATGATAGAAAAATTTCATTGTTAGCTACTGTATGGCTTATGGCATCCATTTTTAATCGAATTTTGGTTGATAACAACTCGACATTTATATATATTATATACCATATACCATATCTAGAAGTTCAATTAGGACCTCTCCTTCCTAGGCCATGCTTTTGTAGATGCTAAAACGTAACTGGGATCGCGTGTACTTCTGTTTTGTACTGTCAGGTAAATACTCAAGCCCAATCCCATGTCGTTGATTGCAGTAACCGCAACAATTCAAAATACTATGTTGTCGTTGTTCAGGTATGCCTTCCTTTCTAATTTTCTCTAAACAGTTTGATCTAATGACCTGTATTCTCCTCTTTTAAAACATAACATTTCTTTATGTAGTATTCTGCTAAATTCAATGCTGAAACTGTTAGAAGCTTCCTGTATTCACTCAACGATGGAAAGATACCAAAAAAGAAATTCAACTGTAAGTTTTCTATTATCCTATTGGTGATGCCTTAATGGTTCTAAATGTGGTAATCCAAATTTTTAGTTTACTTGATTCATTAATTGTTCATATATTCACATCCATGCTTTGATTAAGTTAAGTGAGAAGGAGATCACGACACGATTCAAGCACCATTACTTTGTGCATGCTTTGCTTAATATAGATGAAAGAACAAGAGGGGGCCATAAAAACCAAGACCAAACCAACCACGAGAAAAAATTACTGAAAAAAAAGGAAAAAGGAAAATCTCTAAACAAATTATACTTGAAATGCCAAGGGTAGGCACTGATGTTTCAGATACTATAGTGGCTTGAAGTTTTCTTATTCATGGTTTCCTATTTACACAGTGAGACTTGCTCCAGAGGAGATATCTGCAGAGCTAACTGGATATGTGCATAATGCAGTGACATGCATTGGCATGAAAACGGATATTCCAGTAAGAATGTTAATGTTTGACTTGATAAATTGTAGATTTGAAAATTTTCTAGCTCGAGCAACCCATATTTAAATCTTTATTCTGCATTTTTACATATATGCTTTAATTTTTAAAGATCCCATCCCGTAATCGATATGCTCGTTTCTTAATTTGCCCCTAAATTTTCGAAGTGGTACATGTTATTTTGTGCAAATGTGATGATGGCCAATTTTGTTGTAGGGTTCTTCTTGTCTTCTCTTGCTGGATGCAAGGCTAATTCTTTAG

mRNA sequence

TGAAAATTGTCAAAAAGAAAGAAGGAAACTGCATTCATCCGAATTGGCCAATGGGGACCGAGGCTGGAGCAATGGCAGAGCGAAACTCCATGGAAGCACTAGCGAAGCTCGAATATCGCCAGACCCTAATCATCAATCGAATTTTGAAGCTGGAGCTCGCTTATCTTCCAAATCTCGACTCGGAACCTTCTCCAATTTCCTCTGATGAGGCAGATGGCGACACTGTGTCTCGACTCTCCACCATTCTTCGAACCAACGCTGTCAATGACTTCTCCTTCAAGAGGGTTCCCTCTGATTACTACGATTGGTCTCTCGAAGCCCGACGGGACGTTCTTAATGCCGCTTCGGTTGACCATCTCTGCAAGAGCATTGTTCTGGTAAATACTCAAGCCCAATCCCATGTCGTTGATTGCAGTAACCGCAACAATTCAAAATACTATGTTGTCGTTGTTCAGTATTCTGCTAAATTCAATGCTGAAACTGTTAGAAGCTTCCTGTATTCACTCAACGATGGAAAGATACCAAAAAAGAAATTCAACTTGAGACTTGCTCCAGAGGAGATATCTGCAGAGCTAACTGGATATGTGCATAATGCAGTGACATGCATTGGCATGAAAACGGATATTCCAGGTTCTTCTTGTCTTCTCTTGCTGGATGCAAGGCTAATTCTTTAG

Coding sequence (CDS)

ATGGGGACCGAGGCTGGAGCAATGGCAGAGCGAAACTCCATGGAAGCACTAGCGAAGCTCGAATATCGCCAGACCCTAATCATCAATCGAATTTTGAAGCTGGAGCTCGCTTATCTTCCAAATCTCGACTCGGAACCTTCTCCAATTTCCTCTGATGAGGCAGATGGCGACACTGTGTCTCGACTCTCCACCATTCTTCGAACCAACGCTGTCAATGACTTCTCCTTCAAGAGGGTTCCCTCTGATTACTACGATTGGTCTCTCGAAGCCCGACGGGACGTTCTTAATGCCGCTTCGGTTGACCATCTCTGCAAGAGCATTGTTCTGGTAAATACTCAAGCCCAATCCCATGTCGTTGATTGCAGTAACCGCAACAATTCAAAATACTATGTTGTCGTTGTTCAGTATTCTGCTAAATTCAATGCTGAAACTGTTAGAAGCTTCCTGTATTCACTCAACGATGGAAAGATACCAAAAAAGAAATTCAACTTGAGACTTGCTCCAGAGGAGATATCTGCAGAGCTAACTGGATATGTGCATAATGCAGTGACATGCATTGGCATGAAAACGGATATTCCAGGTTCTTCTTGTCTTCTCTTGCTGGATGCAAGGCTAATTCTTTAG

Protein sequence

MGTEAGAMAERNSMEALAKLEYRQTLIINRILKLELAYLPNLDSEPSPISSDEADGDTVSRLSTILRTNAVNDFSFKRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVDCSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVHNAVTCIGMKTDIPGSSCLLLLDARLIL

Homology

[Close]

BLAST of Cp4.1LG08g07470 vs. NCBI nr
Match: XP_023538668.1 (uncharacterized protein LOC111799544 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 380 bits (977), Expect = 3.97e-132
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MGTEAGAMAERNSMEALAKLEYRQTLIINRILKLELAYLPNLDSEPSPISSDEADGDTVS 60
           MGTEAGAMAERNSMEALAKLEYRQTLIINRILKLELAYLPNLDSEPSPISSDEADGDTVS
Sbjct: 1   MGTEAGAMAERNSMEALAKLEYRQTLIINRILKLELAYLPNLDSEPSPISSDEADGDTVS 60

Query: 61  RLSTILRTNAVNDFSFKRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVD 120
           RLSTILRTNAVNDFSFKRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVD
Sbjct: 61  RLSTILRTNAVNDFSFKRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVD 120

Query: 121 CSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVH 180
           CSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVH
Sbjct: 121 CSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVH 180

Query: 181 NAVTCIGMKTDIP 193
           NAVTCIGMKTDIP
Sbjct: 181 NAVTCIGMKTDIP 193

[Close]

BLAST of Cp4.1LG08g07470 vs. NCBI nr
Match: XP_023005520.1 (uncharacterized protein LOC111498483 [Cucurbita maxima])

HSP 1 Score: 373 bits (958), Expect = 3.12e-129
Identity = 189/193 (97.93%), Postives = 191/193 (98.96%), Query Frame = 0


Query: 1   MGTEAGAMAERNSMEALAKLEYRQTLIINRILKLELAYLPNLDSEPSPISSDEADGDTVS 60
           MGTEAGA+AERNSMEALAKLEYRQTLIINRI KLELAYLPNLDSEPSPISSD+ADGDTVS
Sbjct: 1   MGTEAGAIAERNSMEALAKLEYRQTLIINRISKLELAYLPNLDSEPSPISSDKADGDTVS 60

Query: 61  RLSTILRTNAVNDFSFKRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVD 120
           RLSTILRTNAVNDFSF RVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVD
Sbjct: 61  RLSTILRTNAVNDFSFNRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVD 120

Query: 121 CSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVH 180
           CSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVH
Sbjct: 121 CSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVH 180

Query: 181 NAVTCIGMKTDIP 193
           NAVTCIGMKTDIP
Sbjct: 181 NAVTCIGMKTDIP 193

[Close]

BLAST of Cp4.1LG08g07470 vs. NCBI nr
Match: XP_022951583.1 (uncharacterized protein LOC111454353 [Cucurbita moschata] >KAG7028382.1 hypothetical protein SDJN02_09563 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 373 bits (957), Expect = 4.43e-129
Identity = 189/193 (97.93%), Postives = 191/193 (98.96%), Query Frame = 0


Query: 1   MGTEAGAMAERNSMEALAKLEYRQTLIINRILKLELAYLPNLDSEPSPISSDEADGDTVS 60
           MGTEAGAMAERNSMEALAKLEYRQTLIINRI KLELAYLPNLDSEPSPISS+ ADGDTV+
Sbjct: 1   MGTEAGAMAERNSMEALAKLEYRQTLIINRISKLELAYLPNLDSEPSPISSEGADGDTVA 60

Query: 61  RLSTILRTNAVNDFSFKRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVD 120
           RLSTILRTNAVNDFSFKRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVD
Sbjct: 61  RLSTILRTNAVNDFSFKRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVD 120

Query: 121 CSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVH 180
           CSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVH
Sbjct: 121 CSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVH 180

Query: 181 NAVTCIGMKTDIP 193
           NAVTCIGMKTDIP
Sbjct: 181 NAVTCIGMKTDIP 193

[Close]

BLAST of Cp4.1LG08g07470 vs. NCBI nr
Match: KAG6596854.1 (hypothetical protein SDJN03_10034, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 373 bits (957), Expect = 2.08e-128
Identity = 190/193 (98.45%), Postives = 190/193 (98.45%), Query Frame = 0


Query: 1   MGTEAGAMAERNSMEALAKLEYRQTLIINRILKLELAYLPNLDSEPSPISSDEADGDTVS 60
           MGTEAGAMAERNSMEALAKLEYRQT IINRI KLELAYLPNLDSEPSPISSDEADGDTVS
Sbjct: 1   MGTEAGAMAERNSMEALAKLEYRQTQIINRISKLELAYLPNLDSEPSPISSDEADGDTVS 60

Query: 61  RLSTILRTNAVNDFSFKRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVD 120
           RLSTILRTNAVNDFSFKRV SDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVD
Sbjct: 61  RLSTILRTNAVNDFSFKRVSSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVD 120

Query: 121 CSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVH 180
           CSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVH
Sbjct: 121 CSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVH 180

Query: 181 NAVTCIGMKTDIP 193
           NAVTCIGMKTDIP
Sbjct: 181 NAVTCIGMKTDIP 193

[Close]

BLAST of Cp4.1LG08g07470 vs. NCBI nr
Match: KAA0041095.1 (YbaK/aminoacyl-tRNA synthetase-associated domain isoform 2 [Cucumis melo var. makuwa])

HSP 1 Score: 324 bits (831), Expect = 3.93e-110
Identity = 162/196 (82.65%), Postives = 179/196 (91.33%), Query Frame = 0


Query: 1   MGTEAGAMAERNSMEALAKLEYRQTLIINRILKLELAYLPNLDSEPSPISSDEADGDTVS 60
           MG+E+ AMAE+NSMEALAKLE+RQTLI++RI  LEL YLPNLDS PS + SD AD DTV+
Sbjct: 5   MGSESEAMAEQNSMEALAKLEHRQTLILHRISNLELKYLPNLDSPPSSVPSDGADDDTVA 64

Query: 61  RLSTILRTNAVNDFSFKRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVD 120
           RLS ILRTNAVNDFSFKRVPSDYYDW+LEARRDVL+AAS+DHLCKSIVLVNTQA SHVVD
Sbjct: 65  RLSAILRTNAVNDFSFKRVPSDYYDWALEARRDVLDAASIDHLCKSIVLVNTQAPSHVVD 124

Query: 121 CSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVH 180
           CS+RNNSKYY+VVVQY+AKFNAE V+SFLYSLNDGKI KKKFNLRLAPEE SA+LTGY H
Sbjct: 125 CSDRNNSKYYIVVVQYTAKFNAEAVKSFLYSLNDGKIAKKKFNLRLAPEETSAKLTGYEH 184

Query: 181 NAVTCIGMKTDIPGSS 196
           N VTCIGMKTDIP S+
Sbjct: 185 NGVTCIGMKTDIPVST 200

[Close]

BLAST of Cp4.1LG08g07470 vs. ExPASy TrEMBL
Match: A0A6J1KXM4 (uncharacterized protein LOC111498483 OS=Cucurbita maxima OX=3661 GN=LOC111498483 PE=4 SV=1)

HSP 1 Score: 373 bits (958), Expect = 1.51e-129
Identity = 189/193 (97.93%), Postives = 191/193 (98.96%), Query Frame = 0


Query: 1   MGTEAGAMAERNSMEALAKLEYRQTLIINRILKLELAYLPNLDSEPSPISSDEADGDTVS 60
           MGTEAGA+AERNSMEALAKLEYRQTLIINRI KLELAYLPNLDSEPSPISSD+ADGDTVS
Sbjct: 1   MGTEAGAIAERNSMEALAKLEYRQTLIINRISKLELAYLPNLDSEPSPISSDKADGDTVS 60

Query: 61  RLSTILRTNAVNDFSFKRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVD 120
           RLSTILRTNAVNDFSF RVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVD
Sbjct: 61  RLSTILRTNAVNDFSFNRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVD 120

Query: 121 CSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVH 180
           CSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVH
Sbjct: 121 CSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVH 180

Query: 181 NAVTCIGMKTDIP 193
           NAVTCIGMKTDIP
Sbjct: 181 NAVTCIGMKTDIP 193

[Close]

BLAST of Cp4.1LG08g07470 vs. ExPASy TrEMBL
Match: A0A6J1GI39 (uncharacterized protein LOC111454353 OS=Cucurbita moschata OX=3662 GN=LOC111454353 PE=4 SV=1)

HSP 1 Score: 373 bits (957), Expect = 2.14e-129
Identity = 189/193 (97.93%), Postives = 191/193 (98.96%), Query Frame = 0


Query: 1   MGTEAGAMAERNSMEALAKLEYRQTLIINRILKLELAYLPNLDSEPSPISSDEADGDTVS 60
           MGTEAGAMAERNSMEALAKLEYRQTLIINRI KLELAYLPNLDSEPSPISS+ ADGDTV+
Sbjct: 1   MGTEAGAMAERNSMEALAKLEYRQTLIINRISKLELAYLPNLDSEPSPISSEGADGDTVA 60

Query: 61  RLSTILRTNAVNDFSFKRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVD 120
           RLSTILRTNAVNDFSFKRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVD
Sbjct: 61  RLSTILRTNAVNDFSFKRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVD 120

Query: 121 CSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVH 180
           CSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVH
Sbjct: 121 CSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVH 180

Query: 181 NAVTCIGMKTDIP 193
           NAVTCIGMKTDIP
Sbjct: 181 NAVTCIGMKTDIP 193

[Close]

BLAST of Cp4.1LG08g07470 vs. ExPASy TrEMBL
Match: A0A5A7TI57 (YbaK/aminoacyl-tRNA synthetase-associated domain isoform 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold477G00690 PE=4 SV=1)

HSP 1 Score: 324 bits (831), Expect = 1.90e-110
Identity = 162/196 (82.65%), Postives = 179/196 (91.33%), Query Frame = 0


Query: 1   MGTEAGAMAERNSMEALAKLEYRQTLIINRILKLELAYLPNLDSEPSPISSDEADGDTVS 60
           MG+E+ AMAE+NSMEALAKLE+RQTLI++RI  LEL YLPNLDS PS + SD AD DTV+
Sbjct: 5   MGSESEAMAEQNSMEALAKLEHRQTLILHRISNLELKYLPNLDSPPSSVPSDGADDDTVA 64

Query: 61  RLSTILRTNAVNDFSFKRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVD 120
           RLS ILRTNAVNDFSFKRVPSDYYDW+LEARRDVL+AAS+DHLCKSIVLVNTQA SHVVD
Sbjct: 65  RLSAILRTNAVNDFSFKRVPSDYYDWALEARRDVLDAASIDHLCKSIVLVNTQAPSHVVD 124

Query: 121 CSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVH 180
           CS+RNNSKYY+VVVQY+AKFNAE V+SFLYSLNDGKI KKKFNLRLAPEE SA+LTGY H
Sbjct: 125 CSDRNNSKYYIVVVQYTAKFNAEAVKSFLYSLNDGKIAKKKFNLRLAPEETSAKLTGYEH 184

Query: 181 NAVTCIGMKTDIPGSS 196
           N VTCIGMKTDIP S+
Sbjct: 185 NGVTCIGMKTDIPVST 200

[Close]

BLAST of Cp4.1LG08g07470 vs. ExPASy TrEMBL
Match: A0A5D3CLG6 (YbaK/aminoacyl-tRNA synthetase-associated domain isoform 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00230 PE=4 SV=1)

HSP 1 Score: 323 bits (829), Expect = 2.90e-110
Identity = 161/193 (83.42%), Postives = 177/193 (91.71%), Query Frame = 0


Query: 1   MGTEAGAMAERNSMEALAKLEYRQTLIINRILKLELAYLPNLDSEPSPISSDEADGDTVS 60
           MG+E+ AMAE+NSMEALAKLE+RQTLI++RI  LEL YLPNLDS PS + SD AD DTV+
Sbjct: 1   MGSESEAMAEQNSMEALAKLEHRQTLILHRISNLELKYLPNLDSPPSSVPSDGADDDTVA 60

Query: 61  RLSTILRTNAVNDFSFKRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVD 120
           RLS ILRTNAVNDFSFKRVPSDYYDW+LEARRDVL+AAS+DHLCKSIVLVNTQA SHVVD
Sbjct: 61  RLSAILRTNAVNDFSFKRVPSDYYDWALEARRDVLDAASIDHLCKSIVLVNTQAPSHVVD 120

Query: 121 CSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVH 180
           CS+RNNSKYY+VVVQY+AKFNAE V+SFLYSLNDGKI KKKFNLRLAPEE SA+LTGY H
Sbjct: 121 CSDRNNSKYYIVVVQYTAKFNAEAVKSFLYSLNDGKIAKKKFNLRLAPEETSAKLTGYEH 180

Query: 181 NAVTCIGMKTDIP 193
           N VTCIGMKTDIP
Sbjct: 181 NGVTCIGMKTDIP 193

[Close]

BLAST of Cp4.1LG08g07470 vs. ExPASy TrEMBL
Match: A0A1S3BLB4 (uncharacterized protein LOC103490895 OS=Cucumis melo OX=3656 GN=LOC103490895 PE=4 SV=1)

HSP 1 Score: 322 bits (825), Expect = 3.12e-109
Identity = 160/193 (82.90%), Postives = 176/193 (91.19%), Query Frame = 0


Query: 1   MGTEAGAMAERNSMEALAKLEYRQTLIINRILKLELAYLPNLDSEPSPISSDEADGDTVS 60
           MG+E+ AMAE+NSMEALAKLE+RQTLI++RI  LEL YLPNLDS PS + SD AD DTV+
Sbjct: 5   MGSESEAMAEQNSMEALAKLEHRQTLILHRISNLELKYLPNLDSPPSSVPSDGADDDTVA 64

Query: 61  RLSTILRTNAVNDFSFKRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVD 120
           RLS ILRTNAVNDFSFKRVPSDYYDW+LEARRDVL+AAS+DHLCKSIVLVNTQA SHVVD
Sbjct: 65  RLSAILRTNAVNDFSFKRVPSDYYDWALEARRDVLDAASIDHLCKSIVLVNTQAPSHVVD 124

Query: 121 CSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVH 180
           CS+RNNSKYY+VVVQY+AKFNAE V+SFLYSLNDGKI KKKFNLRLAPEE S +LTGY H
Sbjct: 125 CSDRNNSKYYIVVVQYTAKFNAEAVKSFLYSLNDGKIAKKKFNLRLAPEETSVKLTGYEH 184

Query: 181 NAVTCIGMKTDIP 193
           N VTCIGMKTDIP
Sbjct: 185 NGVTCIGMKTDIP 197

[Close]

BLAST of Cp4.1LG08g07470 vs. TAIR 10
Match: AT4G16510.1 (YbaK/aminoacyl-tRNA synthetase-associated domain )

HSP 1 Score: 235.3 bits (599), Expect = 4.3e-62
Identity = 123/188 (65.43%), Postives = 151/188 (80.32%), Query Frame = 0


Query: 8   MAERNSME-ALAKLEYRQTLIINRILKLELAYLP-NLDSEPSPISSDEADGDTVSRLSTI 67
           M +   ME A A+LE  Q  I+++I  LE ++LP N  + PSP S    + +TV+RLSTI
Sbjct: 1   MDDGEGMETAAAELERLQIEILHKISILESSFLPQNSSAAPSP-SLPVDENETVTRLSTI 60

Query: 68  LRTNAVNDFSFKRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVDCSNRN 127
           L++  VNDF FKRV +DYYDW LE+RRDVL A+SVDHLCKSIVLVNTQA S+++DCS+ N
Sbjct: 61  LQSGGVNDFCFKRVATDYYDWPLESRRDVLGASSVDHLCKSIVLVNTQAASNILDCSDPN 120

Query: 128 NSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVHNAVTC 187
           NSKYYVVVVQY+A+FNAE V+ FLYSLN+GKIPKK+FNLRLAPEE S +LTG+ HN VTC
Sbjct: 121 NSKYYVVVVQYTARFNAEAVKQFLYSLNEGKIPKKRFNLRLAPEETSIKLTGFEHNGVTC 180

Query: 188 IGMKTDIP 194
           IGMKT+IP
Sbjct: 181 IGMKTNIP 187

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g07470 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG08g07470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023538668.1	3.97e-132	100.00	uncharacterized protein LOC111799544 [Cucurbita pepo subsp. pepo]	[more]
XP_023005520.1	3.12e-129	97.93	uncharacterized protein LOC111498483 [Cucurbita maxima]	[more]
XP_022951583.1	4.43e-129	97.93	uncharacterized protein LOC111454353 [Cucurbita moschata] >KAG7028382.1 hypothet...	[more]
KAG6596854.1	2.08e-128	98.45	hypothetical protein SDJN03_10034, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0041095.1	3.93e-110	82.65	YbaK/aminoacyl-tRNA synthetase-associated domain isoform 2 [Cucumis melo var. ma...	[more]

BLAST of Cp4.1LG08g07470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KXM4	1.51e-129	97.93	uncharacterized protein LOC111498483 OS=Cucurbita maxima OX=3661 GN=LOC111498483...	[more]
A0A6J1GI39	2.14e-129	97.93	uncharacterized protein LOC111454353 OS=Cucurbita moschata OX=3662 GN=LOC1114543...	[more]
A0A5A7TI57	1.90e-110	82.65	YbaK/aminoacyl-tRNA synthetase-associated domain isoform 2 OS=Cucumis melo var. ...	[more]
A0A5D3CLG6	2.90e-110	83.42	YbaK/aminoacyl-tRNA synthetase-associated domain isoform 2 OS=Cucumis melo var. ...	[more]
A0A1S3BLB4	3.12e-109	82.90	uncharacterized protein LOC103490895 OS=Cucumis melo OX=3656 GN=LOC103490895 PE=...	[more]

BLAST of Cp4.1LG08g07470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16510.1	4.3e-62	65.43	YbaK/aminoacyl-tRNA synthetase-associated domain	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036754	YbaK/aminoacyl-tRNA synthetase-associated domain superfamily	GENE3D	3.90.960.10		coord: 71..206 e-value: 3.1E-15 score: 58.1
IPR036754	YbaK/aminoacyl-tRNA synthetase-associated domain superfamily	SUPERFAMILY	55826	YbaK/ProRS associated domain	coord: 74..193
None	No IPR available	PANTHER	PTHR30411	UNCHARACTERIZED	coord: 14..193
None	No IPR available	PANTHER	PTHR30411:SF4	YBAK/AMINOACYL-TRNA SYNTHETASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN	coord: 14..193
None	No IPR available	CDD	cd04332	YbaK_like	coord: 87..193 e-value: 3.63558E-9 score: 51.3897

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g07470.1	Cp4.1LG08g07470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0106074	aminoacyl-tRNA metabolism involved in translational fidelity
molecular_function	GO:0002161	aminoacyl-tRNA editing activity
molecular_function	GO:0004812	aminoacyl-tRNA ligase activity