Cp4.1LG08g06870 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG08g06870
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	tRNA_int_end_N2 domain-containing protein
Location	Cp4.1LG08: 5254731 .. 5257812 (+)
RNA-Seq Expression	Cp4.1LG08g06870
Synteny	Cp4.1LG08g06870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTATGATAATGCTTAAGATCATCAAATCTCAATCAAGACTGCTTGACATCATCAGTCTGCTCGATGGCATTCCACATGCTTTTGCTTTTTATCGTCATCTCATCTCTTTTGATGATAACATTTGTTTCAACATCCTTGCTCTGATAACAAATCTTGATTCTGACTCTCAATCGAACCACATCAAAATAAATAATTAAAGTAGGAAAAATGAAATAAATAACGAGATAACTATATATTTTATAAGTTTGAAATGCTAAGTAAGTTCCTAAATTGCCTTGCGGAAAAAAAGAAAATATATATCGATGTAAAATAAACAAAAAAGAAAAATAAGTAAACCCTACGCCCCGTTTCCATCCTCCTCTCCCAGTTTTGCTTTCCTGCTCGTCCGTTGTTGCCGCAGTCGCCCGTCCGATTCGCACGGCAACCAGGTTTTTTTTTGTCCCTTCATCTCTCTTAACTTCCGACTTCCGCCACGCCCCCACCGCCACGCCAATTCCGCCTTCTGTTACCAAATGAAATTTCAGAATTAGGAACCGTGCCATGTTAATATCTTGCAATTTTAGTAGTTTTGGGTCGTTATTTCTCAATGTATTATGTAATTGGAGTACCATTTCCATTCCCTGAACGATGAGTTTTGATATTTGATTAGGAGTTTTCTGATGGAGGCTACGGATTGGGAAATATCTTCAGGAGGGGCTAGTGATGATGACGATAATTTCGAGCAAGACATAAAAGAAGAAGAAGAATGTCTTTGTTCATCCGGGAACATGCGAAAGTTGCAATTCAGGTTGAGGATTTCAAGAATTTAGACTCCTCCAAATCCTTCAATAGGATGATGCTGTTTTCTTAGAAATATCTTCAATATTTTTGCTCTGTCTCCAGGAAGCATGCTTCAACTGCTCGCTGGAATGATGAAATGGGAATGGCGGAAGTTTTGGAGAACAAGGGTAGCCTTTGGACGACATCTGGCATTGTACGTTGTGGCAAGATTTATTGTTCCATTGAGGAAACTTTGTAGGTTAACTATGGTTTTATTATGGTTTGTTATCCCTATCGTTTTTGATGTTGATCACAACATTTTTTTTTTGGGAGTTCTTACCAAAAAATAAAACAACATTTTTTGGGGAGTTATTCTCTTCCACATTGTTTTAGTGTGATTCCTATAACATACTGTAATATAGTGAAAAAGAAATGAAAATGGAAGTTTTTCTGTCATTTTTTTGTTGCTTTATAGTCGTCTTTTGGGAGCCTTATTTAGAACATTACATTAGAAATAAAGGGAAGAAACTCAAGCTTACAGTATGCAGGAGGAAGCACTAGTAGTAGCCTTTTGTGTTTTGGTAAAGAAAGGAAATCATCATTGTTTAAGTACTAATTCTTTTTCTAGCATCAATGAAATTTTTATTAAGCTTATTTGTGTTCGTATATATGATTTTATCACTTTTCTTTTCTATCGTTTTACATTCACTTGGGCAATGTTTCTTTAATGTGTCTCTTATTTTTATAAAGTTAGAAGCTTGTTGCCTTAAATTGTGTTTTGTGCTCTGTAAATGTTGATAGTAGTATGAACTTGGCGCTAAAATAGAGTTTTACAAGCAGAAAATTTAGGATTGTGTTCATTTTTTAGTCATTCGGATGACAACTTTTAAGCATGCTATCAAACATTCCTTTCTATATGTTCAGATTTCTTATTGAAGTTGGGGCTTTACATCTTCTGGATCATGATAATTCAAGTCTTTCTCTGAAAGATGTATACAAGAAGGTAGCTGAAGGAAAAAGTGAATGCATTTGGGAGCAGTTTGAGGTTTATAGGCACCTCAAATCCCTTGGTTATATTGTTGGAAAGCATAAAGTTCCATGGTCTGTGAAGGGTGCTAGGAATGGCGGCGATATTTCTTCTCGAAGTTCTATTGAAAACAAAGGATCAACAGATTTTGGATCAGAAGACGAGAAGTCGATCTGTGAACTTATAGATGCCATTCAGCTCAATGAAGTGACACCCATTTTTGATGTTTATCTTCCACATAGCAAGTTTAGAAAGTCCTCTCCTGGTGATCCAAATTTTATGGTCTGCTTGACTAGGTAAGTTCACTTGTCAAAAATCCATGTAACTTGCTTATTGTTCTGTGTCTGGTTGGGTTATATTATTATTTCTTCTCNCTAAAAAAAAAAAAAAAAAAATGAATTGCACCTGACTTACTTTTTGATAATTTGCTTAATCTAAATGTCAATAATGGCAACACCAACACCAACTAGAGGACAATAGTTTTGACCCTAAGATAGTATGTGCACTACAACTTGTGTGCAAATATTTGTAAACTACACTTATTGTGTATTTTGGTATTCCTTTTGAAAAAGGAAGGTATGGAAGCAGTTTTTCTATAAGCACTCTTAAGTACCTTTATTTATTCATTCATACACTTTCACTTTTCAGTCATCCATAAAGGGTTTTTAGTAGGAATGTCAAACACACTTAGATTGGTCCCATTTCTATGGCTGTGAAATTGTTTACTCAATATATCAGCTTCATTTTTAGCCGTCTCTGAGTATTTAGTTTCATTCTGGAAATAACACCAATATGAGGTCAAGAATAGGCTGTGCCTTCTTTAAATAACACCATTATCAGGTCTATGATAGGCTTCAACTTGTGTCGTTTCTTTCTTTTGCGAAAGTCTATGCATTACTTAGTTTCGAGTTTATCTGATCCTTTAATTACTGTCGTATAAATCTTTTTTATAGGGGATATCCACCTCCAAAAACAGATATTGAAGTTATTGAAAGAAAATCAGGAGGTATACCAATGAAATATTGTCACGTTGAACATGGACGTGTCTGTTTCTTTTCATTTGATAAGGTGGAGCTGCCCGTCTTACCTTGACATTGTTGTGGATTGGTCATGGTCAACTAGTATATTATGCTATTCAAAGATTTAATTTATTGGATTTGTGTTTGGTATGTGATTTGAATCCTATTTTATGATTTCAGACGTGTGTAGGAATAGAAAGAATACAGATTAGGAGAGTTTGGTGGCAATTTGCTAACTTGACATGTAATTATTTTTAAATCTCATTTTATGCGTTT

mRNA sequence

TTTATGATAATGCTTAAGATCATCAAATCTCAATCAAGACTGCTTGACATCATCAGTCTGCTCGATGGCATTCCACATGCTTTTGCTTTTTATCGTCATCTCATCTCTTTTGATGATAACATTTGTTTCAACATCCTTGCTCTGATAACAAATCTTGATTCTGACTCTCAATCGAACCACATCAAAATAAATAATTAAAGTAGGAAAAATGAAATAAATAACGAGATAACTATATATTTTATAAGTTTGAAATGCTAAGTAAGTTCCTAAATTGCCTTGCGGAAAAAAAGAAAATATATATCGATGTAAAATAAACAAAAAAGAAAAATAAGTAAACCCTACGCCCCGTTTCCATCCTCCTCTCCCAGTTTTGCTTTCCTGCTCGTCCGTTGTTGCCGCAGTCGCCCGTCCGATTCGCACGGCAACCAGGAGTTTTCTGATGGAGGCTACGGATTGGGAAATATCTTCAGGAGGGGCTAGTGATGATGACGATAATTTCGAGCAAGACATAAAAGAAGAAGAAGAATGTCTTTGTTCATCCGGGAACATGCGAAAGTTGCAATTCAGGAAGCATGCTTCAACTGCTCGCTGGAATGATGAAATGGGAATGGCGGAAGTTTTGGAGAACAAGGGTAGCCTTTGGACGACATCTGGCATTGTACGTTGTGGCAAGATTTATTGTTCCATTGAGGAAACTTTATTTCTTATTGAAGTTGGGGCTTTACATCTTCTGGATCATGATAATTCAAGTCTTTCTCTGAAAGATGTATACAAGAAGGTAGCTGAAGGAAAAAGTGAATGCATTTGGGAGCAGTTTGAGGTTTATAGGCACCTCAAATCCCTTGGTTATATTGTTGGAAAGCATAAAGTTCCATGGTCTGTGAAGGGTGCTAGGAATGGCGGCGATATTTCTTCTCGAAGTTCTATTGAAAACAAAGGATCAACAGATTTTGGATCAGAAGACGAGAAGTCGATCTGTGAACTTATAGATGCCATTCAGCTCAATGAAGTGACACCCATTTTTGATGTTTATCTTCCACATAGCAAGTTTAGAAAGTCCTCTCCTGGTGATCCAAATTTTATGGTCTGCTTGACTAGGGGATATCCACCTCCAAAAACAGATATTGAAGTTATTGAAAGAAAATCAGGAGGTATACCAATGAAATATTGTCACGTTGAACATGGACGTGTCTGTTTCTTTTCATTTGATAAGGTGGAGCTGCCCGTCTTACCTTGACATTGTTGTGGATTGGTCATGGTCAACTAGTATATTATGCTATTCAAAGATTTAATTTATTGGATTTGTGTTTGGTATGTGATTTGAATCCTATTTTATGATTTCAGACGTGTGTAGGAATAGAAAGAATACAGATTAGGAGAGTTTGGTGGCAATTTGCTAACTTGACATGTAATTATTTTTAAATCTCATTTTATGCGTTT

Coding sequence (CDS)

ATGGAGGCTACGGATTGGGAAATATCTTCAGGAGGGGCTAGTGATGATGACGATAATTTCGAGCAAGACATAAAAGAAGAAGAAGAATGTCTTTGTTCATCCGGGAACATGCGAAAGTTGCAATTCAGGAAGCATGCTTCAACTGCTCGCTGGAATGATGAAATGGGAATGGCGGAAGTTTTGGAGAACAAGGGTAGCCTTTGGACGACATCTGGCATTGTACGTTGTGGCAAGATTTATTGTTCCATTGAGGAAACTTTATTTCTTATTGAAGTTGGGGCTTTACATCTTCTGGATCATGATAATTCAAGTCTTTCTCTGAAAGATGTATACAAGAAGGTAGCTGAAGGAAAAAGTGAATGCATTTGGGAGCAGTTTGAGGTTTATAGGCACCTCAAATCCCTTGGTTATATTGTTGGAAAGCATAAAGTTCCATGGTCTGTGAAGGGTGCTAGGAATGGCGGCGATATTTCTTCTCGAAGTTCTATTGAAAACAAAGGATCAACAGATTTTGGATCAGAAGACGAGAAGTCGATCTGTGAACTTATAGATGCCATTCAGCTCAATGAAGTGACACCCATTTTTGATGTTTATCTTCCACATAGCAAGTTTAGAAAGTCCTCTCCTGGTGATCCAAATTTTATGGTCTGCTTGACTAGGGGATATCCACCTCCAAAAACAGATATTGAAGTTATTGAAAGAAAATCAGGAGGTATACCAATGAAATATTGTCACGTTGAACATGGACGTGTCTGTTTCTTTTCATTTGATAAGGTGGAGCTGCCCGTCTTACCTTGA

Protein sequence

MEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEVLENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSECIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSRSSIENKGSTDFGSEDEKSICELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIPMKYCHVEHGRVCFFSFDKVELPVLP

Homology

[Close]

BLAST of Cp4.1LG08g06870 vs. ExPASy Swiss-Prot
Match: Q7Z6J9 (tRNA-splicing endonuclease subunit Sen54 OS=Homo sapiens OX=9606 GN=TSEN54 PE=1 SV=3)

HSP 1 Score: 52.8 bits (125), Expect = 7.1e-06
Identity = 27/74 (36.49%), Postives = 44/74 (59.46%), Query Frame = 0


Query: 194 IFDVYLPH--SKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIER---KSGGIPMKYCHVEH 253
           IFDVY     + FRK++PG P   +C++ G+  P  D+  ++R   +SG +P+ +  V+H
Sbjct: 449 IFDVYQADAVATFRKNNPGKPYARMCIS-GFDEPVPDLCSLKRLSYQSGDVPLIFALVDH 508

Query: 254 GRVCFFSFDKVELP 263
           G + F+SF    LP
Sbjct: 509 GDISFYSFRDFTLP 521

[Close]

BLAST of Cp4.1LG08g06870 vs. ExPASy Swiss-Prot
Match: Q8C2A2 (tRNA-splicing endonuclease subunit Sen54 OS=Mus musculus OX=10090 GN=Tsen54 PE=2 SV=2)

HSP 1 Score: 51.6 bits (122), Expect = 1.6e-05
Identity = 26/73 (35.62%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 195 FDVYLPH--SKFRKSSPGDPNFMVCLTRGYPPPKTD---IEVIERKSGGIPMKYCHVEHG 254
           FDVY     + FRK+SPG P   +C++ G+  P  D   ++ +  +SG +P+ +  V+HG
Sbjct: 449 FDVYQADAVATFRKNSPGKPYVRMCIS-GFDDPVPDLCSLKCLTYQSGDVPLIFALVDHG 508

Query: 255 RVCFFSFDKVELP 263
            + F+SF    LP
Sbjct: 509 DISFYSFRDFTLP 520

[Close]

BLAST of Cp4.1LG08g06870 vs. ExPASy Swiss-Prot
Match: O74908 (Probable tRNA-splicing endonuclease subunit sen54 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sen54 PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.3e-04
Identity = 32/105 (30.48%), Postives = 52/105 (49.52%), Query Frame = 0


Query: 36  NMRKLQFRKHASTARWNDEMGMAEVLENKGSLWTTSGIVRC-GKIYCSIEETLFLIEVGA 95
           ++ +L   KHA  A WN + GM+ V +  G L+ T G      +++   EETL+L+E G+
Sbjct: 73  SVERLISAKHAIIATWNAQNGMSCVEKAHGPLFKTMGTADSQNRMWLLPEETLYLVERGS 132

Query: 96  LHLLDHDNSSLSLKDVYKKVAEGKSECIWEQFEVYRHLKSLGYIV 140
           +     +   +SL+ VY            E + VY HL+  G+ V
Sbjct: 133 MECWSEEGLPMSLQAVYSASIPLCGSL--ENYLVYAHLRRCGFSV 175

[Close]

BLAST of Cp4.1LG08g06870 vs. ExPASy Swiss-Prot
Match: Q74ZJ5 (tRNA-splicing endonuclease subunit SEN54 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=SEN54 PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.7e-04
Identity = 31/102 (30.39%), Postives = 52/102 (50.98%), Query Frame = 0


Query: 49  ARWNDEMGMAEVLENKGSLWTTSGIV-RCGKIYCSIEETLFLIEVGAL----------HL 108
           A W +E  MA +   +GS   T G V + G+ +  + E ++L+E G +            
Sbjct: 88  AYWEEEQRMARIPNARGSFTNTMGKVDKHGQCWLQLHEFVYLVERGTVSPYLALTVGDEK 147

Query: 109 LDHDNSSLSLKDVYKKVAEGKSECIWEQFEVYRHLKSLGYIV 140
            +H++  LS++DVY   +  +     ++F VY HLK LG+IV
Sbjct: 148 SNHEDVLLSVQDVYALFSSTEE---LDEFLVYAHLKRLGFIV 186

[Close]

BLAST of Cp4.1LG08g06870 vs. NCBI nr
Match: XP_023538818.1 (tRNA-splicing endonuclease subunit Sen54-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 548 bits (1412), Expect = 5.45e-197
Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 0


Query: 1   MEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEV 60
           MEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEV
Sbjct: 1   MEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEV 60

Query: 61  LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE 120
           LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE
Sbjct: 61  LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE 120

Query: 121 CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSRSSIENKGSTDFGSEDEKSIC 180
           CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSRSSIENKGSTDFGSEDEKSIC
Sbjct: 121 CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSRSSIENKGSTDFGSEDEKSIC 180

Query: 181 ELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIP 240
           ELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIP
Sbjct: 181 ELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIP 240

Query: 241 MKYCHVEHGRVCFFSFDKVELPVLP 265
           MKYCHVEHGRVCFFSFDKVELPVLP
Sbjct: 241 MKYCHVEHGRVCFFSFDKVELPVLP 265

[Close]

BLAST of Cp4.1LG08g06870 vs. NCBI nr
Match: KAG7028441.1 (tRNA-splicing endonuclease subunit Sen54 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 546 bits (1408), Expect = 2.22e-196
Identity = 264/265 (99.62%), Postives = 265/265 (100.00%), Query Frame = 0


Query: 1   MEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEV 60
           MEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEV
Sbjct: 1   MEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEV 60

Query: 61  LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE 120
           LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE
Sbjct: 61  LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE 120

Query: 121 CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSRSSIENKGSTDFGSEDEKSIC 180
           CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISS+SSIENKGSTDFGSEDEKSIC
Sbjct: 121 CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSQSSIENKGSTDFGSEDEKSIC 180

Query: 181 ELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIP 240
           ELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIP
Sbjct: 181 ELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIP 240

Query: 241 MKYCHVEHGRVCFFSFDKVELPVLP 265
           MKYCHVEHGRVCFFSFDKVELPVLP
Sbjct: 241 MKYCHVEHGRVCFFSFDKVELPVLP 265

[Close]

BLAST of Cp4.1LG08g06870 vs. NCBI nr
Match: XP_022940787.1 (tRNA-splicing endonuclease subunit Sen54 [Cucurbita moschata])

HSP 1 Score: 545 bits (1405), Expect = 6.37e-196
Identity = 263/265 (99.25%), Postives = 265/265 (100.00%), Query Frame = 0


Query: 1   MEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEV 60
           MEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEV
Sbjct: 1   MEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEV 60

Query: 61  LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE 120
           LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE
Sbjct: 61  LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE 120

Query: 121 CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSRSSIENKGSTDFGSEDEKSIC 180
           CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGA+NGGDISS+SSIENKGSTDFGSEDEKSIC
Sbjct: 121 CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGAKNGGDISSQSSIENKGSTDFGSEDEKSIC 180

Query: 181 ELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIP 240
           ELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIP
Sbjct: 181 ELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIP 240

Query: 241 MKYCHVEHGRVCFFSFDKVELPVLP 265
           MKYCHVEHGRVCFFSFDKVELPVLP
Sbjct: 241 MKYCHVEHGRVCFFSFDKVELPVLP 265

[Close]

BLAST of Cp4.1LG08g06870 vs. NCBI nr
Match: KAG6596967.1 (Chromatin assembly factor 1 subunit FAS1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 546 bits (1408), Expect = 3.72e-192
Identity = 264/265 (99.62%), Postives = 265/265 (100.00%), Query Frame = 0


Query: 1   MEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEV 60
           MEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEV
Sbjct: 272 MEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEV 331

Query: 61  LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE 120
           LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE
Sbjct: 332 LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE 391

Query: 121 CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSRSSIENKGSTDFGSEDEKSIC 180
           CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISS+SSIENKGSTDFGSEDEKSIC
Sbjct: 392 CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSQSSIENKGSTDFGSEDEKSIC 451

Query: 181 ELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIP 240
           ELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIP
Sbjct: 452 ELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIP 511

Query: 241 MKYCHVEHGRVCFFSFDKVELPVLP 265
           MKYCHVEHGRVCFFSFDKVELPVLP
Sbjct: 512 MKYCHVEHGRVCFFSFDKVELPVLP 536

[Close]

BLAST of Cp4.1LG08g06870 vs. NCBI nr
Match: XP_022973340.1 (tRNA-splicing endonuclease subunit Sen54 isoform X3 [Cucurbita maxima] >XP_022973341.1 tRNA-splicing endonuclease subunit Sen54 isoform X3 [Cucurbita maxima])

HSP 1 Score: 535 bits (1377), Expect = 1.18e-191
Identity = 258/265 (97.36%), Postives = 263/265 (99.25%), Query Frame = 0


Query: 1   MEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEV 60
           MEATDWEISSGGASDDDDNFEQDIKEEEECL SSGNMRKLQFRKHASTARWNDEMGMAEV
Sbjct: 1   MEATDWEISSGGASDDDDNFEQDIKEEEECLRSSGNMRKLQFRKHASTARWNDEMGMAEV 60

Query: 61  LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE 120
           LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE
Sbjct: 61  LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE 120

Query: 121 CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSRSSIENKGSTDFGSEDEKSIC 180
           CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSRSSIENKGSTDF SEDEKSIC
Sbjct: 121 CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSRSSIENKGSTDFESEDEKSIC 180

Query: 181 ELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIP 240
           EL++A+QLNE+TPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIP
Sbjct: 181 ELLNAVQLNELTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIP 240

Query: 241 MKYCHVEHGRVCFFSFDKVELPVLP 265
           MKYCHVEHGRVCFFSFDKV+LPVLP
Sbjct: 241 MKYCHVEHGRVCFFSFDKVKLPVLP 265

[Close]

BLAST of Cp4.1LG08g06870 vs. ExPASy TrEMBL
Match: A0A6J1FKK4 (tRNA-splicing endonuclease subunit Sen54 OS=Cucurbita moschata OX=3662 GN=LOC111446255 PE=3 SV=1)

HSP 1 Score: 545 bits (1405), Expect = 3.08e-196
Identity = 263/265 (99.25%), Postives = 265/265 (100.00%), Query Frame = 0


Query: 1   MEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEV 60
           MEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEV
Sbjct: 1   MEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEV 60

Query: 61  LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE 120
           LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE
Sbjct: 61  LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE 120

Query: 121 CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSRSSIENKGSTDFGSEDEKSIC 180
           CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGA+NGGDISS+SSIENKGSTDFGSEDEKSIC
Sbjct: 121 CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGAKNGGDISSQSSIENKGSTDFGSEDEKSIC 180

Query: 181 ELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIP 240
           ELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIP
Sbjct: 181 ELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIP 240

Query: 241 MKYCHVEHGRVCFFSFDKVELPVLP 265
           MKYCHVEHGRVCFFSFDKVELPVLP
Sbjct: 241 MKYCHVEHGRVCFFSFDKVELPVLP 265

[Close]

BLAST of Cp4.1LG08g06870 vs. ExPASy TrEMBL
Match: A0A6J1I8D9 (tRNA-splicing endonuclease subunit Sen54 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111471897 PE=3 SV=1)

HSP 1 Score: 535 bits (1377), Expect = 5.73e-192
Identity = 258/265 (97.36%), Postives = 263/265 (99.25%), Query Frame = 0


Query: 1   MEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEV 60
           MEATDWEISSGGASDDDDNFEQDIKEEEECL SSGNMRKLQFRKHASTARWNDEMGMAEV
Sbjct: 1   MEATDWEISSGGASDDDDNFEQDIKEEEECLRSSGNMRKLQFRKHASTARWNDEMGMAEV 60

Query: 61  LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE 120
           LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE
Sbjct: 61  LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE 120

Query: 121 CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSRSSIENKGSTDFGSEDEKSIC 180
           CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSRSSIENKGSTDF SEDEKSIC
Sbjct: 121 CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSRSSIENKGSTDFESEDEKSIC 180

Query: 181 ELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIP 240
           EL++A+QLNE+TPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIP
Sbjct: 181 ELLNAVQLNELTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIP 240

Query: 241 MKYCHVEHGRVCFFSFDKVELPVLP 265
           MKYCHVEHGRVCFFSFDKV+LPVLP
Sbjct: 241 MKYCHVEHGRVCFFSFDKVKLPVLP 265

[Close]

BLAST of Cp4.1LG08g06870 vs. ExPASy TrEMBL
Match: A0A6J1ICR8 (tRNA-splicing endonuclease subunit Sen54 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111471897 PE=3 SV=1)

HSP 1 Score: 535 bits (1377), Expect = 6.64e-192
Identity = 258/265 (97.36%), Postives = 263/265 (99.25%), Query Frame = 0


Query: 1   MEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEV 60
           MEATDWEISSGGASDDDDNFEQDIKEEEECL SSGNMRKLQFRKHASTARWNDEMGMAEV
Sbjct: 5   MEATDWEISSGGASDDDDNFEQDIKEEEECLRSSGNMRKLQFRKHASTARWNDEMGMAEV 64

Query: 61  LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE 120
           LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE
Sbjct: 65  LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE 124

Query: 121 CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSRSSIENKGSTDFGSEDEKSIC 180
           CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSRSSIENKGSTDF SEDEKSIC
Sbjct: 125 CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSRSSIENKGSTDFESEDEKSIC 184

Query: 181 ELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIP 240
           EL++A+QLNE+TPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIP
Sbjct: 185 ELLNAVQLNELTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIP 244

Query: 241 MKYCHVEHGRVCFFSFDKVELPVLP 265
           MKYCHVEHGRVCFFSFDKV+LPVLP
Sbjct: 245 MKYCHVEHGRVCFFSFDKVKLPVLP 269

[Close]

BLAST of Cp4.1LG08g06870 vs. ExPASy TrEMBL
Match: A0A6J1I794 (tRNA-splicing endonuclease subunit Sen54 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111471897 PE=3 SV=1)

HSP 1 Score: 535 bits (1377), Expect = 9.61e-192
Identity = 258/265 (97.36%), Postives = 263/265 (99.25%), Query Frame = 0


Query: 1   MEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEV 60
           MEATDWEISSGGASDDDDNFEQDIKEEEECL SSGNMRKLQFRKHASTARWNDEMGMAEV
Sbjct: 15  MEATDWEISSGGASDDDDNFEQDIKEEEECLRSSGNMRKLQFRKHASTARWNDEMGMAEV 74

Query: 61  LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE 120
           LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE
Sbjct: 75  LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE 134

Query: 121 CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSRSSIENKGSTDFGSEDEKSIC 180
           CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSRSSIENKGSTDF SEDEKSIC
Sbjct: 135 CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSRSSIENKGSTDFESEDEKSIC 194

Query: 181 ELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIP 240
           EL++A+QLNE+TPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIP
Sbjct: 195 ELLNAVQLNELTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIP 254

Query: 241 MKYCHVEHGRVCFFSFDKVELPVLP 265
           MKYCHVEHGRVCFFSFDKV+LPVLP
Sbjct: 255 MKYCHVEHGRVCFFSFDKVKLPVLP 279

[Close]

BLAST of Cp4.1LG08g06870 vs. ExPASy TrEMBL
Match: A0A6J1DRN3 (uncharacterized protein LOC111023660 OS=Momordica charantia OX=3673 GN=LOC111023660 PE=3 SV=1)

HSP 1 Score: 468 bits (1204), Expect = 1.35e-165
Identity = 220/265 (83.02%), Postives = 246/265 (92.83%), Query Frame = 0


Query: 1   MEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEV 60
           MEATDWE SSGGAS DD+ +EQD+++EEECLC+SGNMRKLQFRKHASTARWND+MGMAEV
Sbjct: 1   MEATDWESSSGGASGDDEIYEQDVEDEEECLCASGNMRKLQFRKHASTARWNDQMGMAEV 60

Query: 61  LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE 120
           LEN+GSLWTT+GIVRCGKIYCS EETLFL+EVGALHLLDHDNSSLSLKDVYKKVAEGK+ 
Sbjct: 61  LENRGSLWTTTGIVRCGKIYCSFEETLFLMEVGALHLLDHDNSSLSLKDVYKKVAEGKNG 120

Query: 121 CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSRSSIENKGSTDFGSEDEKSIC 180
           C+WEQFEVYRHLKSLG+IVGKHKVPWSVKG RNG DIS +SSIEN+G+ D  S+DE+SI 
Sbjct: 121 CLWEQFEVYRHLKSLGFIVGKHKVPWSVKGVRNGSDISPQSSIENEGAWDLESKDERSIS 180

Query: 181 ELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIP 240
           EL+ +IQL++V PIFDV+LPHSKFRKSSPGDPNFMVCLTRGYPPPK DIE +ER S GI 
Sbjct: 181 ELLSSIQLDQVMPIFDVFLPHSKFRKSSPGDPNFMVCLTRGYPPPKKDIEFLERTSRGIH 240

Query: 241 MKYCHVEHGRVCFFSFDKVELPVLP 265
           +KYCHVEHGRVCFFSFDK+ELPVLP
Sbjct: 241 IKYCHVEHGRVCFFSFDKLELPVLP 265

[Close]

BLAST of Cp4.1LG08g06870 vs. TAIR 10
Match: AT3G57360.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02370.2); Has 122 Blast hits to 122 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 74; Fungi - 4; Plants - 41; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). )

HSP 1 Score: 235.0 bits (598), Expect = 7.2e-62
Identity = 121/266 (45.49%), Postives = 174/266 (65.41%), Query Frame = 0


Query: 1   MEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEV 60
           ME  DWE SS  +S+++  F  D  EE     S G++ KLQFR  +S ARW  E+GMAEV
Sbjct: 1   MEEKDWEASS--SSENEGGFPNDDDEE---FHSGGSVPKLQFRVGSSKARWITELGMAEV 60

Query: 61  LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLL-DHDNSSLSLKDVYKKVAEGKS 120
              +G LWTT+GI+R GK YC IEE L+L E+G L +L + D+  + LKD+Y+K+AE KS
Sbjct: 61  EVKRGKLWTTTGIIRSGKTYCFIEEALYLSEIGELQILGNEDDIVIPLKDLYEKIAEEKS 120

Query: 121 ECIWEQFEVYRHLKSLGYIVGKHKVPWSVK-GARNGGDISSRSSIENKGSTDFGSEDEKS 180
            C WE +EVYR+LK LGYI+G+H V W++K  AR  G+  S  + E     D       +
Sbjct: 121 GCSWENYEVYRYLKGLGYILGRHGVSWTLKDAARPNGEEESACAGECPADND-------T 180

Query: 181 ICELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGG 240
           + +L+  +Q+ +   +FDVYLP+S+F+KSSPG+P+F+ C +   PP K DI+V++++   
Sbjct: 181 VTKLLGDMQICDAKAVFDVYLPNSRFKKSSPGEPSFVACFSGDSPPSKEDIKVLQKRIAA 240

Query: 241 IPMKYCHVEHGRVCFFSFDKVELPVL 265
            P+ +CH+  GR  FFSF  ++LPVL
Sbjct: 241 -PLTFCHIAQGRASFFSFSSIDLPVL 253

[Close]

BLAST of Cp4.1LG08g06870 vs. TAIR 10
Match: AT3G02370.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57360.1). )

HSP 1 Score: 173.3 bits (438), Expect = 2.6e-43
Identity = 84/175 (48.00%), Postives = 120/175 (68.57%), Query Frame = 0


Query: 57  MAEVLENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLL-DHDNSSLSLKDVYKKVA 116
           MAEV   +G LWTT+GI+R GK YC IEE L+L E+G L LL D D+  +SLKD+Y ++A
Sbjct: 1   MAEVEVKRGKLWTTTGIIRTGKTYCFIEEALYLSEIGELQLLGDEDDVVISLKDLYGEIA 60

Query: 117 EGKSECIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSRSSIENKGSTDFGSED 176
           EGK  C WE +EVYR+LK LGYI+G+H VPW+ K A N    +     E+  + +F  +D
Sbjct: 61  EGKYGCCWENYEVYRYLKGLGYILGRHGVPWTTKYAVN---TTPSDEDESLCAAEF-FQD 120

Query: 177 EKSICELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIE 231
             S+ +L+  + + +  P+FDVYLP+S+F+KSSPG+P+F+ C +   PP K +I+
Sbjct: 121 RDSVTKLLSDMHICDARPVFDVYLPNSQFKKSSPGEPSFVTCFSGDSPPSKEEIK 171

[Close]

BLAST of Cp4.1LG08g06870 vs. TAIR 10
Match: AT3G02370.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57360.1); Has 95 Blast hits to 95 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 53; Fungi - 2; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 166.0 bits (419), Expect = 4.1e-41
Identity = 80/164 (48.78%), Postives = 114/164 (69.51%), Query Frame = 0


Query: 57  MAEVLENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLL-DHDNSSLSLKDVYKKVA 116
           MAEV   +G LWTT+GI+R GK YC IEE L+L E+G L LL D D+  +SLKD+Y ++A
Sbjct: 1   MAEVEVKRGKLWTTTGIIRTGKTYCFIEEALYLSEIGELQLLGDEDDVVISLKDLYGEIA 60

Query: 117 EGKSECIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSRSSIENKGSTDFGSED 176
           EGK  C WE +EVYR+LK LGYI+G+H VPW+ K A N    +     E+  + +F  +D
Sbjct: 61  EGKYGCCWENYEVYRYLKGLGYILGRHGVPWTTKYAVN---TTPSDEDESLCAAEF-FQD 120

Query: 177 EKSICELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLT 220
             S+ +L+  + + +  P+FDVYLP+S+F+KSSPG+P+F+ C +
Sbjct: 121 RDSVTKLLSDMHICDARPVFDVYLPNSQFKKSSPGEPSFVTCFS 160

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g06870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7Z6J9	7.1e-06	36.49	tRNA-splicing endonuclease subunit Sen54 OS=Homo sapiens OX=9606 GN=TSEN54 PE=1 ...	[more]
Q8C2A2	1.6e-05	35.62	tRNA-splicing endonuclease subunit Sen54 OS=Mus musculus OX=10090 GN=Tsen54 PE=2...	[more]
O74908	1.3e-04	30.48	Probable tRNA-splicing endonuclease subunit sen54 OS=Schizosaccharomyces pombe (...	[more]
Q74ZJ5	1.7e-04	30.39	tRNA-splicing endonuclease subunit SEN54 OS=Ashbya gossypii (strain ATCC 10895 /...	[more]

BLAST of Cp4.1LG08g06870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023538818.1	5.45e-197	100.00	tRNA-splicing endonuclease subunit Sen54-like [Cucurbita pepo subsp. pepo]	[more]
KAG7028441.1	2.22e-196	99.62	tRNA-splicing endonuclease subunit Sen54 [Cucurbita argyrosperma subsp. argyrosp...	[more]
XP_022940787.1	6.37e-196	99.25	tRNA-splicing endonuclease subunit Sen54 [Cucurbita moschata]	[more]
KAG6596967.1	3.72e-192	99.62	Chromatin assembly factor 1 subunit FAS1, partial [Cucurbita argyrosperma subsp....	[more]
XP_022973340.1	1.18e-191	97.36	tRNA-splicing endonuclease subunit Sen54 isoform X3 [Cucurbita maxima] >XP_02297...	[more]

BLAST of Cp4.1LG08g06870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FKK4	3.08e-196	99.25	tRNA-splicing endonuclease subunit Sen54 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1I8D9	5.73e-192	97.36	tRNA-splicing endonuclease subunit Sen54 isoform X3 OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1ICR8	6.64e-192	97.36	tRNA-splicing endonuclease subunit Sen54 isoform X2 OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1I794	9.61e-192	97.36	tRNA-splicing endonuclease subunit Sen54 isoform X1 OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1DRN3	1.35e-165	83.02	uncharacterized protein LOC111023660 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]

BLAST of Cp4.1LG08g06870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57360.1	7.2e-62	45.49	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G02370.2	2.6e-43	48.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G02370.1	4.1e-41	48.78	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.1350.150		coord: 67..156 e-value: 1.9E-5 score: 26.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
IPR024336	tRNA-splicing endonuclease, subunit Sen54, N-terminal	PFAM	PF12928	tRNA_int_end_N2	coord: 40..97 e-value: 3.3E-9 score: 36.8
IPR024337	tRNA-splicing endonuclease, subunit Sen54	PANTHER	PTHR21027	TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN54	coord: 1..265

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g06870.1	Cp4.1LG08g06870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0000379	tRNA-type intron splice site recognition and cleavage
cellular_component	GO:0000214	tRNA-intron endonuclease complex
molecular_function	GO:0004519	endonuclease activity