Cp4.1LG08g05500 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG08g05500
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	50S ribosomal protein l3
Location	Cp4.1LG08: 862572 .. 866322 (+)
RNA-Seq Expression	Cp4.1LG08g05500
Synteny	Cp4.1LG08g05500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGAACCCTAAACCCCGAGTGGTCACCTTGCTTGCTGCCGCTCTCCCTCCATTACACTGCGTACAGAGAGAGAGAGAATGAAATTCCAGTGTCTCCGAGATCGGAATCTACTCTGAAACTGAGCTAAAGCTTCCCATTTTCTCTCTTGCATCTCCCCATCCAAGCAATCGTTGCGAGTGTTCTTCACCATGTCGGCTTTATCCAGAGGTCTCATTTCTCGTTTTCGTCTTCTGTCGATCAATTCCGCCGCTTCTCCGATAATTACTTCTTCTTCTTCTTCTTCTTCATGGACGCATCCGTCTTGTTATTTCTTCTTCCGTACTTTCAGTACCGAGGGTTCGATTCAGGCCGGTGATGGCTCTTCGCTTTCTTCTCCGATTATTGAAGCTAAACCTGGTGTTATGAGCCCTAACTCGAAGCGTACGGGAGTCATTGCTGTCAAGTGTGGAATGTCGGCGCTGTGGGATAAATGGGGAGCTAGGGTACCCATCACTGTGCTCTGGGTTGATGATAATATTGTATCTCAGGTCAAGACTATTGAGAAAGAAGGCATCACAGCTCTCCAGGTACTGTTTAAATATCTTCTTCTCGTTTTCATTTCTGTCAGCGGAGTAGTTTTTGTTTATTATTCTTGTGAGCACTGCTTAGATGAAATTAGGAAGGGGACATTGTTGGCTCTGGTAGTCTTGGTTTCTGAATGGCATGGGATTTTGGCTTAATGATGCCGAGGAGTACATCTTTGGAATACTATTTGCTATGTTACTCTCTCTGTGAGAGGGATTTGAAGCTGTTACTCTGTTACTCCTACCCTTTCAATTCCATGGATTCTGGAACTATACTGAATTGAGCTGCACACTGTTGTTTTGGATCAGCATTTCACCTATGAAAGATATTCAGTTATCAGAATAGAAGTTGAAGAGGGTATTTATGTACGTTCTGTCTTTCATATGGAAATCAGAGGCCAATGGGCCATTCCCTTTACTCGTACCGATCAGAATCTGACCTCACGAGAAATTGAGCAAAAGGCTGCCGAATTGGCCTATTTCTTGCGTGTACCCATTGAAGTTTTTTGAAAATGAAGTTCAGAAGTAGGAAGAGGTATATAACTGAAATGAAAGAATAATCCTTTTAATAGACAATAGTAATAGTATAACTTAACGGGAGTTTCTTCAGAATGCTCATTTGAGACAAAGCAGACGTATACGGATCAGACAGAAAACTGTCTTGGTCCGAAATTTTGTGGCTTCCATTGTTACACTTAACTAGACGTGATTATATGACCTTTTTGTTCTTAATAACTGGGTTATCGAGGTTCAAATTCTCGTATCAAACTCATTGCCTACCTCCCTAATATTTGGGAAGCAACAAGAGTTTTGATTATTACTTACACTTACCATTGTTGATTTCACCATTTCTAAGGGGAAAAAAAGTTGTCTTGACCGTTAGACCATATGTATGAGATCTCTTTTTTCAGTTCTTACAAATTTTATGGTATAGGACTTGCATTTATTGACCAAGTGTGCTATGCTATGGTGCTAGTTAGATTGGCTGTGGACAGAAGAAGGCGAAGCATTTGACAAAACCCGAGGTAGGTCATTTTAGGGCTCAAGGTGTTCCATTGAAGAGGAAACTGAGGGAGTTTCCAGTGACAGAAGACGCCCTTCTTCCAGTTGGTACGACAATTGGTGTTCGTCATTTTGTCCCTGGACAGTTTGTTGATGTGACAGGAATAACAAGAGGGAAAGGTTTCCAGGTGAGTCCATTGCAGCATTCCTTCATTAAGTTTTTAGCTCACAGCCTCTACTCCTATTAGGTTTCTTTCATTCCCTTGTATTTGTTAATATGGTTAAGTTAATTACATATTCAAAACACATGAATGTTATTGTGGGAACATAAATGGTTAAGTTAATTGCATATTCAGGCAAATATTTTCAATAAACACCGTAACCCAACTCTAATATTTTACCATGATTTACCTAACTCGAACTTGTTTTGTTTGGCTTGAATGCTTAATTATCTAACATTCTGCATGATCTGCGGGGTGAAATTTGAACATCAAAGTCACAGTGCTGTACATGTGTATGTTATCACAAGATAATACGGACAATTTCTCGATGAGATCACGTGCATCCTCAAGATGACAAGAATTAAAACAATCACACAATTCATATATATAAGTATAAACACGAAAAATATTAAGGGCTCTATACAAACCCTAGGAGAAACTTGTGTAGCTGATAACTTATGTTGATCTTTGATCTTTGCTTTGTTTCTGTTTTTCATGTTTTTGCTAATCTGGTTGTATGTTTGTGTTCTAGACATAAAAAAGCTGTTTTCTTTCCATGTGTAAATGGTATAATATCTTTTCCATAAAATGATGTCTCTTATGGCTAATCTTTTTTCTTATTGTTCACAGGGAGTGATGAAAAAGCATGGATTTAAAGGAATGCCAGCATCCCACGGAGCATCATTATCCCACAGAAGCCTCGGTTCTACAGGTCAGAGGGATGCTCCTGGAAAGGTGTGTTTATCTTTTCATGGTGACACTCATTTTTAAGATTGAGTGGTTATTTCAGTTCTCAAATGCATTTTAAGGCTACCCAAAACTCACATCTGGTTGAAACTCGAGCATTGAAGATATCCGCGTAGTAGTAGGGTAATATATCGCGCTAGCCTACTTCGACATAGGACTTTGATTCTGTCTCCTTCGTTTCCTGTCAATGTGCAAGGTTCTTTCTCAATGAATGGAGATTTTAGAGAATAGAAACAAGAATTTGATGGGACTAAACAAAAAGGAATAACTTGCACGGTAAAAGGACGTTTTCTGGATTTATCTATGCTTGTGCAATGAATCAATATCGAGTAATTACTATATTGTAATAGAACAAGCTTGAATTGTTTTTTTAATACCAACTTTATCTGCAGTAGAATTACTATGTTGTAATAGAACACGCTTTGGTTTAGTCTGATTTATTTCTTGAATCGTTTTTATGGTCTGTTATGTTGTGAGTTCTACTCCGTTTTCTCTGTATGCCATGTCGTATACGACTGAGAAACGTGTTCTTATTTTCCAGGTTTTTAAAGGTAAGAAGATGGCTGGTCGTATGGGTGGGAAGCAGAGAACTGTGAAAAATGTGTGGGTCTACAAAATTGATCCTGCAAGAAACTTGATGTGGGTTAGAGGACAAGTAAGTTTCTTTCAATATACACATAAATATGACACTCTTGCGACATTGTGATCTGAGATTATTTGCTGCACAAAACTTCACCTTCCAGGTCCCGGGCGCCGAAGGAAACTTTGTATTTATAAAAGACGCCTTCTACAAGAAACCCAACAAGTCGATCCTTCCATTCCCTACCTACTTTGCGAACGACGACGAGGACACAGAGACGTTGGAACCTCTCGTTGCTGATCTTGGAGAAGTAGATCCATTCATGGTTGGAGAATGATAGGGAGTTGGGCTTTTCAGTGCAAGTTCTTCGATTTCGCTCTGTTTTTTTCGATCTTTTCAGCTACTGATGACCCTTTTTCGAGTAGAAACGCAGCTGGAGGTTCTGTATGAGGCAATCCAATCTCCTTATACGATGGGAATTTACCATTTACTTTTCTTTCAACTCAAAACTTGTACCGGAAAATGCCATTTTGAAATAAAGGATAGAGAAAAAGCTATGATTATTGAGGTTTTTTGTTGATGTTTATGTGAACTTGGAGAAAGAGATTGTTTATGGCTGCCGTCGCCTCTCTTCATTT

mRNA sequence

TAGAACCCTAAACCCCGAGTGGTCACCTTGCTTGCTGCCGCTCTCCCTCCATTACACTGCGTACAGAGAGAGAGAGAATGAAATTCCAGTGTCTCCGAGATCGGAATCTACTCTGAAACTGAGCTAAAGCTTCCCATTTTCTCTCTTGCATCTCCCCATCCAAGCAATCGTTGCGAGTGTTCTTCACCATGTCGGCTTTATCCAGAGGTCTCATTTCTCGTTTTCGTCTTCTGTCGATCAATTCCGCCGCTTCTCCGATAATTACTTCTTCTTCTTCTTCTTCTTCATGGACGCATCCGTCTTGTTATTTCTTCTTCCGTACTTTCAGTACCGAGGGTTCGATTCAGGCCGGTGATGGCTCTTCGCTTTCTTCTCCGATTATTGAAGCTAAACCTGGTGTTATGAGCCCTAACTCGAAGCGTACGGGAGTCATTGCTGTCAAGTGTGGAATGTCGGCGCTGTGGGATAAATGGGGAGCTAGGGTACCCATCACTGTGCTCTGGGTTGATGATAATATTGTATCTCAGGTCAAGACTATTGAGAAAGAAGGCATCACAGCTCTCCAGATTGGCTGTGGACAGAAGAAGGCGAAGCATTTGACAAAACCCGAGGTAGGTCATTTTAGGGCTCAAGGTGTTCCATTGAAGAGGAAACTGAGGGAGTTTCCAGTGACAGAAGACGCCCTTCTTCCAGTTGGTACGACAATTGGTGTTCGTCATTTTGTCCCTGGACAGTTTGTTGATGTGACAGGAATAACAAGAGGGAAAGGTTTCCAGGGAGTGATGAAAAAGCATGGATTTAAAGGAATGCCAGCATCCCACGGAGCATCATTATCCCACAGAAGCCTCGGTTCTACAGGTCAGAGGGATGCTCCTGGAAAGGTTTTTAAAGGTAAGAAGATGGCTGGTCGTATGGGTGGGAAGCAGAGAACTGTGAAAAATGTGTGGGTCTACAAAATTGATCCTGCAAGAAACTTGATGTGGGTTAGAGGACAAGTCCCGGGCGCCGAAGGAAACTTTGTATTTATAAAAGACGCCTTCTACAAGAAACCCAACAAGTCGATCCTTCCATTCCCTACCTACTTTGCGAACGACGACGAGGACACAGAGACGTTGGAACCTCTCGTTGCTGATCTTGGAGAAGTAGATCCATTCATGGTTGGAGAATGATAGGGAGTTGGGCTTTTCAGTGCAAGTTCTTCGATTTCGCTCTGTTTTTTTCGATCTTTTCAGCTACTGATGACCCTTTTTCGAGTAGAAACGCAGCTGGAGGTTCTGTATGAGGCAATCCAATCTCCTTATACGATGGGAATTTACCATTTACTTTTCTTTCAACTCAAAACTTGTACCGGAAAATGCCATTTTGAAATAAAGGATAGAGAAAAAGCTATGATTATTGAGGTTTTTTGTTGATGTTTATGTGAACTTGGAGAAAGAGATTGTTTATGGCTGCCGTCGCCTCTCTTCATTT

Coding sequence (CDS)

ATGTCGGCTTTATCCAGAGGTCTCATTTCTCGTTTTCGTCTTCTGTCGATCAATTCCGCCGCTTCTCCGATAATTACTTCTTCTTCTTCTTCTTCTTCATGGACGCATCCGTCTTGTTATTTCTTCTTCCGTACTTTCAGTACCGAGGGTTCGATTCAGGCCGGTGATGGCTCTTCGCTTTCTTCTCCGATTATTGAAGCTAAACCTGGTGTTATGAGCCCTAACTCGAAGCGTACGGGAGTCATTGCTGTCAAGTGTGGAATGTCGGCGCTGTGGGATAAATGGGGAGCTAGGGTACCCATCACTGTGCTCTGGGTTGATGATAATATTGTATCTCAGGTCAAGACTATTGAGAAAGAAGGCATCACAGCTCTCCAGATTGGCTGTGGACAGAAGAAGGCGAAGCATTTGACAAAACCCGAGGTAGGTCATTTTAGGGCTCAAGGTGTTCCATTGAAGAGGAAACTGAGGGAGTTTCCAGTGACAGAAGACGCCCTTCTTCCAGTTGGTACGACAATTGGTGTTCGTCATTTTGTCCCTGGACAGTTTGTTGATGTGACAGGAATAACAAGAGGGAAAGGTTTCCAGGGAGTGATGAAAAAGCATGGATTTAAAGGAATGCCAGCATCCCACGGAGCATCATTATCCCACAGAAGCCTCGGTTCTACAGGTCAGAGGGATGCTCCTGGAAAGGTTTTTAAAGGTAAGAAGATGGCTGGTCGTATGGGTGGGAAGCAGAGAACTGTGAAAAATGTGTGGGTCTACAAAATTGATCCTGCAAGAAACTTGATGTGGGTTAGAGGACAAGTCCCGGGCGCCGAAGGAAACTTTGTATTTATAAAAGACGCCTTCTACAAGAAACCCAACAAGTCGATCCTTCCATTCCCTACCTACTTTGCGAACGACGACGAGGACACAGAGACGTTGGAACCTCTCGTTGCTGATCTTGGAGAAGTAGATCCATTCATGGTTGGAGAATGA

Protein sequence

MSALSRGLISRFRLLSINSAASPIITSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGSSLSSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEKEGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFVPGQFVDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMAGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPNKSILPFPTYFANDDEDTETLEPLVADLGEVDPFMVGE

Homology

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BLAST of Cp4.1LG08g05500 vs. ExPASy Swiss-Prot
Match: Q9LRN8 (50S ribosomal protein L3-2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL3B PE=1 SV=1)

HSP 1 Score: 485.3 bits (1248), Expect = 5.3e-136
Identity = 248/330 (75.15%), Postives = 275/330 (83.33%), Query Frame = 0


Query: 1   MSALSRGLISRF-RLLSINSAASPIITSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGSS 60
           M+A+ RGL+SR  + LSI S       + SSS S  H S +F  R FS++  +  G GS 
Sbjct: 1   MAAVPRGLLSRINQFLSIRS------ITPSSSESLPHCSSFFLIRRFSSDTGLMDGGGSD 60

Query: 61  L---SSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKT 120
           +    + IIEAK G MS  SKRTG+IAVKCGM+ALWDKWG R+PI++LWVDDNIVSQVKT
Sbjct: 61  IIGAQTRIIEAKQGEMSSRSKRTGIIAVKCGMTALWDKWGKRIPISILWVDDNIVSQVKT 120

Query: 121 IEKEGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVR 180
           +EKEGI ALQIGCGQKK KHL+K  VGHFRAQGVPLKRKLREFPVTEDALLPVGT++GVR
Sbjct: 121 VEKEGIFALQIGCGQKKPKHLSKAVVGHFRAQGVPLKRKLREFPVTEDALLPVGTSLGVR 180

Query: 181 HFVPGQFVDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGK 240
           HFVPGQ+VDVTGITRGKGFQG MK+HGF GMPASHGASLSHRS GSTGQRDAPGKVFKG+
Sbjct: 181 HFVPGQYVDVTGITRGKGFQGCMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVFKGR 240

Query: 241 KMAGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPNKSILPFP 300
           KMAGRMG  QRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDA+ KKP+ S LPFP
Sbjct: 241 KMAGRMGADQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAWCKKPDISKLPFP 300

Query: 301 TYFANDDEDTETLEPLVADLGEVDPFMVGE 327
           TY A +DED   LEPLVADLGEVDPFM+ E
Sbjct: 301 TYLAPEDEDPSELEPLVADLGEVDPFMLAE 324

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BLAST of Cp4.1LG08g05500 vs. ExPASy Swiss-Prot
Match: Q5NQ64 (50S ribosomal protein L3 OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) OX=264203 GN=rplC PE=3 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.3e-57
Identity = 118/228 (51.75%), Postives = 156/228 (68.42%), Query Frame = 0


Query: 78  RTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEKEGITALQIGCGQKKAKHL 137
           RTGVIA K GM+ L+ + G  VP+TVL ++D  V  VK  +++G  A+Q+G G  KAK++
Sbjct: 2   RTGVIAKKVGMTRLFQEDGRHVPVTVLKLEDVQVVAVKNKDQDGYVAVQLGAGSAKAKNV 61

Query: 138 TKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFVPGQFVDVTGITRGKGFQG 197
           TKP  GHF    V LK KL EFPV+EDA+L VGT+I   HF+ GQ VD++G T+GKGF G
Sbjct: 62  TKPVRGHFAKAEVELKAKLVEFPVSEDAVLEVGTSISADHFIAGQLVDISGQTQGKGFAG 121

Query: 198 VMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMAGRMGGKQRTVKNVWVYKI 257
            MK+ GF G+ A+HG SLSHRS GSTG R  PG+VFK KKMAG MG +QRT +N+ V   
Sbjct: 122 AMKRWGFGGLRATHGVSLSHRSHGSTGNRQDPGRVFKNKKMAGHMGARQRTQQNLEVIST 181

Query: 258 DPARNLMWVRGQVPGAEGNFVFIKDAF-YKKPNKSILPFPTYFANDDE 305
           D  R+L++VRG VPG++G ++ I+DA    +P  +  P     AN +E
Sbjct: 182 DAERDLIFVRGSVPGSKGAWLIIRDAVKVARPTDAPYPAAIKAANGNE 229

[Close]

BLAST of Cp4.1LG08g05500 vs. ExPASy Swiss-Prot
Match: Q2G8Y0 (50S ribosomal protein L3 OS=Novosphingobium aromaticivorans (strain ATCC 700278 / DSM 12444 / CCUG 56034 / CIP 105152 / NBRC 16084 / F199) OX=279238 GN=rplC PE=3 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 2.2e-57
Identity = 112/219 (51.14%), Postives = 154/219 (70.32%), Query Frame = 0


Query: 78  RTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEKEGITALQIGCGQKKAKHL 137
           RTGVIA K GM+ L+ + G  VP+TVL +++  V  V+T E++G  ALQ+G G+ K K++
Sbjct: 2   RTGVIAKKVGMTRLFQEDGRHVPVTVLSLENCQVVSVRTAERDGYVALQLGAGEAKQKNV 61

Query: 138 TKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFVPGQFVDVTGITRGKGFQG 197
            KP+  HF    VPLK ++ EF V +DALL VG+TI   HFVPGQ+VD+TG T+GKGFQG
Sbjct: 62  AKPQREHFAKAEVPLKMEVAEFRVADDALLDVGSTIAASHFVPGQYVDITGQTQGKGFQG 121

Query: 198 VMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMAGRMGGKQRTVKNVWVYKI 257
            MK+ GF GM A+HG S+SHR+ GSTG R  PG+VFK KKMAG MG +QRT +N+ V + 
Sbjct: 122 AMKRWGFGGMRATHGVSISHRAHGSTGNRQDPGRVFKNKKMAGHMGDRQRTQQNLEVVRT 181

Query: 258 DPARNLMWVRGQVPGAEGNFVFIKDAFYKKPNKSILPFP 297
           D  R L++V+G VPG++  ++ ++DA  K    +  P+P
Sbjct: 182 DDERGLIFVKGSVPGSKNAWLLVRDA-VKVSRHAEAPYP 219

[Close]

BLAST of Cp4.1LG08g05500 vs. ExPASy Swiss-Prot
Match: Q5FTY3 (50S ribosomal protein L3 OS=Gluconobacter oxydans (strain 621H) OX=290633 GN=rplC PE=3 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 3.7e-57
Identity = 116/219 (52.97%), Postives = 148/219 (67.58%), Query Frame = 0


Query: 78  RTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEKEGITALQIGCGQKKAKHL 137
           RTG+IA K GM+ L+ + G  VP+TVL +D+  V   +T E++G TA+Q+G G  K K++
Sbjct: 2   RTGLIAKKLGMTRLFKEDGTHVPVTVLHLDNVEVVDARTNERDGYTAIQLGLGNAKVKNV 61

Query: 138 TKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFVPGQFVDVTGITRGKGFQG 197
           TK   GHF    V  KR L EF V+EDALL  GT +   HFV GQ VDVTG ++GKGF G
Sbjct: 62  TKANRGHFARTKVEPKRHLAEFRVSEDALLEAGTKLSAAHFVVGQKVDVTGQSKGKGFAG 121

Query: 198 VMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMAGRMGGKQRTVKNVWVYKI 257
           VMK+H F G+ ASHG S+SHRS GSTGQR  PGKVFKGKKMAG MG ++ T  N+ +  +
Sbjct: 122 VMKRHNFAGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGDERVTTLNLEIAAV 181

Query: 258 DPARNLMWVRGQVPGAEGNFVFIKDAFYKKPNKSILPFP 297
           D  RNL+ VRG +PGA+   V I+DA  KK   +  P+P
Sbjct: 182 DEERNLIMVRGAIPGAKNGLVLIRDAI-KKARHADAPYP 219

[Close]

BLAST of Cp4.1LG08g05500 vs. ExPASy Swiss-Prot
Match: Q5LLU6 (50S ribosomal protein L3 OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) OX=246200 GN=rplC PE=3 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 7.8e-55
Identity = 113/219 (51.60%), Postives = 149/219 (68.04%), Query Frame = 0


Query: 78  RTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEKEGITALQIGCGQKKAKHL 137
           R+G+IA K GM+ L+ + G ++P+TVL +D+  V   +T EK+G TA+Q+G G  K K +
Sbjct: 2   RSGIIAKKVGMTRLFMEDGKQIPVTVLQLDNLQVVAQRTTEKDGYTAVQLGAGTPKIKRV 61

Query: 138 TKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFVPGQFVDVTGITRGKGFQG 197
           +K   GHF AQ V  KRKL EF V+EDAL+ VG  I   HF+ GQ VDV+G + GKGF G
Sbjct: 62  SKAMRGHFAAQKVEPKRKLAEFRVSEDALIEVGAEISAEHFLTGQKVDVSGTSIGKGFAG 121

Query: 198 VMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMAGRMGGKQRTVKNVWVYKI 257
            MK+H F G+ ASHG S+SHRS GSTGQ   PG+VFKGKKMAG MG  + T +N+ V K 
Sbjct: 122 AMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGRVFKGKKMAGHMGAARVTTQNLEVVKT 181

Query: 258 DPARNLMWVRGQVPGAEGNFVFIKDAFYKKPNKSILPFP 297
           D  R L++++G VPG +  +V +KDA  KK  +  LPFP
Sbjct: 182 DAERGLVFIKGAVPGPKSGWVTVKDAVKKKAPEG-LPFP 219

[Close]

BLAST of Cp4.1LG08g05500 vs. NCBI nr
Match: XP_023540684.1 (50S ribosomal protein L3-2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 651 bits (1680), Expect = 8.68e-236
Identity = 326/326 (100.00%), Postives = 326/326 (100.00%), Query Frame = 0


Query: 1   MSALSRGLISRFRLLSINSAASPIITSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGSSL 60
           MSALSRGLISRFRLLSINSAASPIITSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGSSL
Sbjct: 1   MSALSRGLISRFRLLSINSAASPIITSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGSSL 60

Query: 61  SSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEKE 120
           SSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEKE
Sbjct: 61  SSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEKE 120

Query: 121 GITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFVP 180
           GITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFVP
Sbjct: 121 GITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFVP 180

Query: 181 GQFVDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMAG 240
           GQFVDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMAG
Sbjct: 181 GQFVDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMAG 240

Query: 241 RMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPNKSILPFPTYFA 300
           RMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPNKSILPFPTYFA
Sbjct: 241 RMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPNKSILPFPTYFA 300

Query: 301 NDDEDTETLEPLVADLGEVDPFMVGE 326
           NDDEDTETLEPLVADLGEVDPFMVGE
Sbjct: 301 NDDEDTETLEPLVADLGEVDPFMVGE 326

[Close]

BLAST of Cp4.1LG08g05500 vs. NCBI nr
Match: KAG6597593.1 (50S ribosomal protein L3-2, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 641 bits (1654), Expect = 8.29e-232
Identity = 323/327 (98.78%), Postives = 324/327 (99.08%), Query Frame = 0


Query: 1   MSALSRGLISRFRLLSINSAASPIITSSSSSSS-WTHPSCYFFFRTFSTEGSIQAGDGSS 60
           MSALSRGLISRFRLLSINSAASP ITSSSSSSS WTHPSCYFFFRTFSTEGSIQAGDGSS
Sbjct: 1   MSALSRGLISRFRLLSINSAASPTITSSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGSS 60

Query: 61  LSSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK 120
           LSSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK
Sbjct: 61  LSSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK 120

Query: 121 EGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFV 180
           EGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFV
Sbjct: 121 EGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFV 180

Query: 181 PGQFVDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMA 240
           PGQFVDVTGITRGKGFQGVMK+HGF GMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMA
Sbjct: 181 PGQFVDVTGITRGKGFQGVMKRHGFDGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMA 240

Query: 241 GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPNKSILPFPTYF 300
           GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPNKSILPFPTYF
Sbjct: 241 GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPNKSILPFPTYF 300

Query: 301 ANDDEDTETLEPLVADLGEVDPFMVGE 326
           ANDDEDTETLEPLVADLGEVDPFMVGE
Sbjct: 301 ANDDEDTETLEPLVADLGEVDPFMVGE 327

[Close]

BLAST of Cp4.1LG08g05500 vs. NCBI nr
Match: XP_022947107.1 (50S ribosomal protein L3-2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 640 bits (1652), Expect = 1.67e-231
Identity = 322/327 (98.47%), Postives = 325/327 (99.39%), Query Frame = 0


Query: 1   MSALSRGLISRFRLLSINSAASPIITSSSSSSS-WTHPSCYFFFRTFSTEGSIQAGDGSS 60
           MSALSRGLISRFRLLSINSAASP ITSSSSSSS WTHPSCYFFFRTFSTEGSIQAGDGSS
Sbjct: 1   MSALSRGLISRFRLLSINSAASPTITSSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGSS 60

Query: 61  LSSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK 120
           LSSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK
Sbjct: 61  LSSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK 120

Query: 121 EGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFV 180
           EGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFV
Sbjct: 121 EGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFV 180

Query: 181 PGQFVDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMA 240
           PGQF+DVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMA
Sbjct: 181 PGQFIDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMA 240

Query: 241 GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPNKSILPFPTYF 300
           GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKP+KSILPFPTYF
Sbjct: 241 GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPDKSILPFPTYF 300

Query: 301 ANDDEDTETLEPLVADLGEVDPFMVGE 326
           AN+DEDTETLEPLVADLGEVDPFMVGE
Sbjct: 301 ANNDEDTETLEPLVADLGEVDPFMVGE 327

[Close]

BLAST of Cp4.1LG08g05500 vs. NCBI nr
Match: KAG7029037.1 (50S ribosomal protein L3-2, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 639 bits (1649), Expect = 4.79e-231
Identity = 321/327 (98.17%), Postives = 325/327 (99.39%), Query Frame = 0


Query: 1   MSALSRGLISRFRLLSINSAASPIITSSSSSSS-WTHPSCYFFFRTFSTEGSIQAGDGSS 60
           MSALSRGLISRFRLLSINSAASP ITSSSSSSS WTHPSCYFFFRTFSTEGSIQAGDGSS
Sbjct: 1   MSALSRGLISRFRLLSINSAASPTITSSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGSS 60

Query: 61  LSSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK 120
           L+SPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK
Sbjct: 61  LTSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK 120

Query: 121 EGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFV 180
           EGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFV
Sbjct: 121 EGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFV 180

Query: 181 PGQFVDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMA 240
           PGQF+DVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMA
Sbjct: 181 PGQFIDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMA 240

Query: 241 GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPNKSILPFPTYF 300
           GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKP+KSILPFPTYF
Sbjct: 241 GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPDKSILPFPTYF 300

Query: 301 ANDDEDTETLEPLVADLGEVDPFMVGE 326
           AN+DEDTETLEPLVADLGEVDPFMVGE
Sbjct: 301 ANNDEDTETLEPLVADLGEVDPFMVGE 327

[Close]

BLAST of Cp4.1LG08g05500 vs. NCBI nr
Match: XP_022972230.1 (50S ribosomal protein L3-2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 636 bits (1641), Expect = 7.66e-230
Identity = 318/326 (97.55%), Postives = 322/326 (98.77%), Query Frame = 0


Query: 1   MSALSRGLISRFRLLSINSAASPIITSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGSSL 60
           MSALSRGLISRFRLLSINS ASP ITSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGSSL
Sbjct: 1   MSALSRGLISRFRLLSINSGASPTITSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGSSL 60

Query: 61  SSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEKE 120
           SSPIIEAK GVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEKE
Sbjct: 61  SSPIIEAKSGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEKE 120

Query: 121 GITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFVP 180
           GITALQIGCGQKKAKHLTKPE+GHFRAQGVPLKRKLREFPV+EDALLPVGTTIGVRHFVP
Sbjct: 121 GITALQIGCGQKKAKHLTKPELGHFRAQGVPLKRKLREFPVSEDALLPVGTTIGVRHFVP 180

Query: 181 GQFVDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMAG 240
           GQFVDVTGITRGKGFQGVMK+HGFKGMPASHGASLSHRS GSTGQRDAPGKVFKGKKMAG
Sbjct: 181 GQFVDVTGITRGKGFQGVMKRHGFKGMPASHGASLSHRSPGSTGQRDAPGKVFKGKKMAG 240

Query: 241 RMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPNKSILPFPTYFA 300
           RMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKP+KSILPFPTYFA
Sbjct: 241 RMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPDKSILPFPTYFA 300

Query: 301 NDDEDTETLEPLVADLGEVDPFMVGE 326
           NDDEDTETLEPLVADLGEVDPFMVGE
Sbjct: 301 NDDEDTETLEPLVADLGEVDPFMVGE 326

[Close]

BLAST of Cp4.1LG08g05500 vs. ExPASy TrEMBL
Match: A0A6J1G5I5 (50S ribosomal protein L3-2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111451076 PE=3 SV=1)

HSP 1 Score: 640 bits (1652), Expect = 8.10e-232
Identity = 322/327 (98.47%), Postives = 325/327 (99.39%), Query Frame = 0


Query: 1   MSALSRGLISRFRLLSINSAASPIITSSSSSSS-WTHPSCYFFFRTFSTEGSIQAGDGSS 60
           MSALSRGLISRFRLLSINSAASP ITSSSSSSS WTHPSCYFFFRTFSTEGSIQAGDGSS
Sbjct: 1   MSALSRGLISRFRLLSINSAASPTITSSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGSS 60

Query: 61  LSSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK 120
           LSSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK
Sbjct: 61  LSSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK 120

Query: 121 EGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFV 180
           EGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFV
Sbjct: 121 EGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFV 180

Query: 181 PGQFVDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMA 240
           PGQF+DVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMA
Sbjct: 181 PGQFIDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMA 240

Query: 241 GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPNKSILPFPTYF 300
           GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKP+KSILPFPTYF
Sbjct: 241 GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPDKSILPFPTYF 300

Query: 301 ANDDEDTETLEPLVADLGEVDPFMVGE 326
           AN+DEDTETLEPLVADLGEVDPFMVGE
Sbjct: 301 ANNDEDTETLEPLVADLGEVDPFMVGE 327

[Close]

BLAST of Cp4.1LG08g05500 vs. ExPASy TrEMBL
Match: A0A6J1I7Y9 (50S ribosomal protein L3-2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111470821 PE=3 SV=1)

HSP 1 Score: 636 bits (1641), Expect = 3.71e-230
Identity = 318/326 (97.55%), Postives = 322/326 (98.77%), Query Frame = 0


Query: 1   MSALSRGLISRFRLLSINSAASPIITSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGSSL 60
           MSALSRGLISRFRLLSINS ASP ITSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGSSL
Sbjct: 1   MSALSRGLISRFRLLSINSGASPTITSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGSSL 60

Query: 61  SSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEKE 120
           SSPIIEAK GVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEKE
Sbjct: 61  SSPIIEAKSGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEKE 120

Query: 121 GITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFVP 180
           GITALQIGCGQKKAKHLTKPE+GHFRAQGVPLKRKLREFPV+EDALLPVGTTIGVRHFVP
Sbjct: 121 GITALQIGCGQKKAKHLTKPELGHFRAQGVPLKRKLREFPVSEDALLPVGTTIGVRHFVP 180

Query: 181 GQFVDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMAG 240
           GQFVDVTGITRGKGFQGVMK+HGFKGMPASHGASLSHRS GSTGQRDAPGKVFKGKKMAG
Sbjct: 181 GQFVDVTGITRGKGFQGVMKRHGFKGMPASHGASLSHRSPGSTGQRDAPGKVFKGKKMAG 240

Query: 241 RMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPNKSILPFPTYFA 300
           RMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKP+KSILPFPTYFA
Sbjct: 241 RMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPDKSILPFPTYFA 300

Query: 301 NDDEDTETLEPLVADLGEVDPFMVGE 326
           NDDEDTETLEPLVADLGEVDPFMVGE
Sbjct: 301 NDDEDTETLEPLVADLGEVDPFMVGE 326

[Close]

BLAST of Cp4.1LG08g05500 vs. ExPASy TrEMBL
Match: A0A6J1CAF7 (50S ribosomal protein L3-2, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111009440 PE=3 SV=1)

HSP 1 Score: 585 bits (1508), Expect = 6.18e-210
Identity = 293/326 (89.88%), Postives = 309/326 (94.79%), Query Frame = 0


Query: 1   MSALSRGLISRFRLLSINSAASPIITSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGSSL 60
           MSALSRGL+SRFRLLSINS AS  I   S SSS THPSCY+FFR+FS+E  IQAGD SS 
Sbjct: 1   MSALSRGLVSRFRLLSINSGASSTI---SPSSSRTHPSCYYFFRSFSSEDLIQAGDVSSP 60

Query: 61  SSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEKE 120
           SSPIIEAKPGVM+PNSKRTGVIAVKCGMSALWDKWGAR+PITVLWVDDNIVSQVKTIEKE
Sbjct: 61  SSPIIEAKPGVMAPNSKRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEKE 120

Query: 121 GITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFVP 180
           GITALQIGCGQKKAKHLTKPE+GHFRAQGVPLKRKLREFPV+ DALLPVGTTIGVRHFVP
Sbjct: 121 GITALQIGCGQKKAKHLTKPELGHFRAQGVPLKRKLREFPVSADALLPVGTTIGVRHFVP 180

Query: 181 GQFVDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMAG 240
           GQ+VDVTGITRGKGFQGVMK+HGFKGMPASHGASLSHRS GSTGQRDAPGKVFKGKKM G
Sbjct: 181 GQYVDVTGITRGKGFQGVMKRHGFKGMPASHGASLSHRSPGSTGQRDAPGKVFKGKKMPG 240

Query: 241 RMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPNKSILPFPTYFA 300
           RMGGKQRTVKNVWVYKIDPARNL+WV+GQVPGAEGNFVFIKDAFYKKP+KSILPFPTYFA
Sbjct: 241 RMGGKQRTVKNVWVYKIDPARNLIWVKGQVPGAEGNFVFIKDAFYKKPDKSILPFPTYFA 300

Query: 301 NDDEDTETLEPLVADLGEVDPFMVGE 326
            +DED+E LEPLVADLGEVDPFMVG+
Sbjct: 301 TEDEDSEKLEPLVADLGEVDPFMVGD 323

[Close]

BLAST of Cp4.1LG08g05500 vs. ExPASy TrEMBL
Match: A0A0A0LAV0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171140 PE=3 SV=1)

HSP 1 Score: 552 bits (1423), Expect = 6.62e-197
Identity = 280/328 (85.37%), Postives = 299/328 (91.16%), Query Frame = 0


Query: 1   MSALSRGLISRFRLLSINSAAS-PIITSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGSS 60
           MSALSRGLISRFRLLSINS+AS  I TSSSSSSS T+ SCY+FFR FST+   QA DGS 
Sbjct: 1   MSALSRGLISRFRLLSINSSASHSITTSSSSSSSRTNASCYYFFRAFSTQDLTQASDGSL 60

Query: 61  LSSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK 120
            +S I EAKPG M  NS RTGVIAVKCGMSALWDKWGAR+PITVLWVDDNIVSQVKTIEK
Sbjct: 61  SASSIFEAKPGTMGSNSTRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120

Query: 121 EGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFV 180
           EGITALQIGCGQKK KHL+KPE+GHFRAQGVPLKRKLREFPV++DALLPVGT IGVRHFV
Sbjct: 121 EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIGVRHFV 180

Query: 181 PGQFVDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMA 240
           PGQ+VDVTGI+RGKGFQGVMK+HGFKGMPASHGASLSHRS GSTGQRDAPGKVFKG+KMA
Sbjct: 181 PGQYVDVTGISRGKGFQGVMKRHGFKGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMA 240

Query: 241 GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPNKS-ILPFPTY 300
           GRMGGKQRTVKNVW+YKIDPARNLMWV+G +PGAEGNFVFIKDA YKK NKS ILPFPTY
Sbjct: 241 GRMGGKQRTVKNVWIYKIDPARNLMWVKGPIPGAEGNFVFIKDAVYKKLNKSAILPFPTY 300

Query: 301 FANDDEDTETLEPLVADLGEVDPFMVGE 326
           FA D EDT+ LEPLVADLGEVDPFM G+
Sbjct: 301 FATDGEDTDKLEPLVADLGEVDPFMTGD 328

[Close]

BLAST of Cp4.1LG08g05500 vs. ExPASy TrEMBL
Match: E5GC40 (50S ribosomal protein l3 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 546 bits (1408), Expect = 1.28e-194
Identity = 275/328 (83.84%), Postives = 300/328 (91.46%), Query Frame = 0


Query: 1   MSALSRGLISRFRLLSINSAASPIITSSS-SSSSWTHPSCYFFFRTFSTEGSIQAGDGSS 60
           MSALSRGLISR RLLSINS AS  +TSSS SSSS T+ SCY+FFR FST+   QA DGS 
Sbjct: 1   MSALSRGLISRLRLLSINSGASHSVTSSSYSSSSRTNASCYYFFRAFSTQDLTQASDGSL 60

Query: 61  LSSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEK 120
            +S IIEAKPG MS NS+RTGVIAVKCGMSALWDKWGAR+PITVLWVDDNIVSQVKTIEK
Sbjct: 61  PASSIIEAKPGTMSSNSRRTGVIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTIEK 120

Query: 121 EGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFV 180
           EGITALQIGCGQKK KHL+KPE+GHFRAQGVPLKRKL+EFPV++DALLPVGT IG RHFV
Sbjct: 121 EGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLKEFPVSQDALLPVGTEIGARHFV 180

Query: 181 PGQFVDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKMA 240
           PGQ+VDVTGI+RGKGFQGVMK+HGFKGMPASHGASLSHRS GSTGQRDAPGKVFKG+KMA
Sbjct: 181 PGQYVDVTGISRGKGFQGVMKRHGFKGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMA 240

Query: 241 GRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPNKS-ILPFPTY 300
           GRMGGKQRTVKNVW+YKIDPARNL+WV+G +PGAEG+FVFIKDA YK+ NKS ILPFPTY
Sbjct: 241 GRMGGKQRTVKNVWIYKIDPARNLIWVKGPIPGAEGSFVFIKDAMYKRLNKSAILPFPTY 300

Query: 301 FANDDEDTETLEPLVADLGEVDPFMVGE 326
           FA D EDT+ LEPLVADLGEVDPFM+G+
Sbjct: 301 FATDGEDTDKLEPLVADLGEVDPFMIGD 328

[Close]

BLAST of Cp4.1LG08g05500 vs. TAIR 10
Match: AT3G17465.1 (ribosomal protein L3 plastid )

HSP 1 Score: 485.3 bits (1248), Expect = 3.7e-137
Identity = 248/330 (75.15%), Postives = 275/330 (83.33%), Query Frame = 0


Query: 1   MSALSRGLISRF-RLLSINSAASPIITSSSSSSSWTHPSCYFFFRTFSTEGSIQAGDGSS 60
           M+A+ RGL+SR  + LSI S       + SSS S  H S +F  R FS++  +  G GS 
Sbjct: 1   MAAVPRGLLSRINQFLSIRS------ITPSSSESLPHCSSFFLIRRFSSDTGLMDGGGSD 60

Query: 61  L---SSPIIEAKPGVMSPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKT 120
           +    + IIEAK G MS  SKRTG+IAVKCGM+ALWDKWG R+PI++LWVDDNIVSQVKT
Sbjct: 61  IIGAQTRIIEAKQGEMSSRSKRTGIIAVKCGMTALWDKWGKRIPISILWVDDNIVSQVKT 120

Query: 121 IEKEGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVR 180
           +EKEGI ALQIGCGQKK KHL+K  VGHFRAQGVPLKRKLREFPVTEDALLPVGT++GVR
Sbjct: 121 VEKEGIFALQIGCGQKKPKHLSKAVVGHFRAQGVPLKRKLREFPVTEDALLPVGTSLGVR 180

Query: 181 HFVPGQFVDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGK 240
           HFVPGQ+VDVTGITRGKGFQG MK+HGF GMPASHGASLSHRS GSTGQRDAPGKVFKG+
Sbjct: 181 HFVPGQYVDVTGITRGKGFQGCMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVFKGR 240

Query: 241 KMAGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAFYKKPNKSILPFP 300
           KMAGRMG  QRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDA+ KKP+ S LPFP
Sbjct: 241 KMAGRMGADQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAWCKKPDISKLPFP 300

Query: 301 TYFANDDEDTETLEPLVADLGEVDPFMVGE 327
           TY A +DED   LEPLVADLGEVDPFM+ E
Sbjct: 301 TYLAPEDEDPSELEPLVADLGEVDPFMLAE 324

[Close]

BLAST of Cp4.1LG08g05500 vs. TAIR 10
Match: AT2G43030.1 (Ribosomal protein L3 family protein )

HSP 1 Score: 155.2 bits (391), Expect = 8.9e-38
Identity = 92/229 (40.17%), Postives = 134/229 (58.52%), Query Frame = 0


Query: 61  SSPIIEAKPG----VMSPNSKRTGVIAVKCGMSALWDKWGARVPITVL-WVDDNIVSQVK 120
           SS +I++ P     V S      GV+  K GM + +++ G  VP+TV+ + + NIV+Q+K
Sbjct: 34  SSLLIKSSPKTRFVVSSSMEAGIGVMGSKLGMMSFFEEDGTVVPVTVVGFREGNIVTQIK 93

Query: 121 TIEKEGITALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTE-DALLPVGTTIG 180
           T+  +G  A+QIG  + + K LTKPE GH +  G    R L+EF +T  +   P    + 
Sbjct: 94  TLATDGYDAVQIGYRRVRDKKLTKPETGHLQKAGTIPMRHLQEFRLTNIEGFEPNQKLVF 153

Query: 181 VRHFVPGQFVDVTGITRGKGFQGVMKKHGFKGMPASHGASLSHRSLGSTGQRDAPGKVFK 240
              F  G  VDV G T GKGFQG +K+H FK    +HG S SHR+LGS G    PG+V+K
Sbjct: 154 DEIFKEGDLVDVAGTTIGKGFQGGIKRHHFKRGQMTHG-SKSHRALGSIGAGTTPGRVYK 213

Query: 241 GKKMAGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDA 284
           GKKM GRMGG +  ++ + + K+D   N++ ++G +PG  GN + I  A
Sbjct: 214 GKKMPGRMGGTRTKIRKLKIVKVDKELNVVMIKGALPGKPGNLLRITPA 261

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g05500 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LRN8	5.3e-136	75.15	50S ribosomal protein L3-2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL...	[more]
Q5NQ64	1.3e-57	51.75	50S ribosomal protein L3 OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 ...	[more]
Q2G8Y0	2.2e-57	51.14	50S ribosomal protein L3 OS=Novosphingobium aromaticivorans (strain ATCC 700278 ...	[more]
Q5FTY3	3.7e-57	52.97	50S ribosomal protein L3 OS=Gluconobacter oxydans (strain 621H) OX=290633 GN=rpl...	[more]
Q5LLU6	7.8e-55	51.60	50S ribosomal protein L3 OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / ...	[more]

BLAST of Cp4.1LG08g05500 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023540684.1	8.68e-236	100.00	50S ribosomal protein L3-2, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
KAG6597593.1	8.29e-232	98.78	50S ribosomal protein L3-2, mitochondrial, partial [Cucurbita argyrosperma subsp...	[more]
XP_022947107.1	1.67e-231	98.47	50S ribosomal protein L3-2, chloroplastic [Cucurbita moschata]	[more]
KAG7029037.1	4.79e-231	98.17	50S ribosomal protein L3-2, chloroplastic, partial [Cucurbita argyrosperma subsp...	[more]
XP_022972230.1	7.66e-230	97.55	50S ribosomal protein L3-2, chloroplastic [Cucurbita maxima]	[more]

BLAST of Cp4.1LG08g05500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G5I5	8.10e-232	98.47	50S ribosomal protein L3-2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A6J1I7Y9	3.71e-230	97.55	50S ribosomal protein L3-2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1CAF7	6.18e-210	89.88	50S ribosomal protein L3-2, chloroplastic OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A0A0LAV0	6.62e-197	85.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171140 PE=3 SV=1	[more]
E5GC40	1.28e-194	83.84	50S ribosomal protein l3 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]

BLAST of Cp4.1LG08g05500 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G17465.1	3.7e-137	75.15	ribosomal protein L3 plastid	[more]
AT2G43030.1	8.9e-38	40.17	Ribosomal protein L3 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019927	Ribosomal protein L3, bacterial/organelle-type	TIGRFAM	TIGR03625	TIGR03625	coord: 80..281 e-value: 7.0E-75 score: 249.2
IPR019927	Ribosomal protein L3, bacterial/organelle-type	PANTHER	PTHR11229	50S RIBOSOMAL PROTEIN L3	coord: 1..326
IPR019927	Ribosomal protein L3, bacterial/organelle-type	HAMAP	MF_01325_B	Ribosomal_L3_B	coord: 78..284 score: 33.727676
None	No IPR available	GENE3D	2.40.30.10	Translation factors	coord: 202..287 e-value: 3.3E-25 score: 90.4
None	No IPR available	GENE3D	3.30.160.810		coord: 110..173 e-value: 9.1E-23 score: 82.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 207..240
None	No IPR available	PANTHER	PTHR11229:SF15	BNAA01G27990D PROTEIN	coord: 1..326
IPR000597	Ribosomal protein L3	PFAM	PF00297	Ribosomal_L3	coord: 176..259 e-value: 6.1E-18 score: 64.9
IPR009000	Translation protein, beta-barrel domain superfamily	SUPERFAMILY	50447	Translation proteins	coord: 72..301

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g05500.1	Cp4.1LG08g05500.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome