Cp4.1LG08g05130 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG08g05130
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	DNA-directed RNA polymerase subunit
Location	Cp4.1LG08: 1018527 .. 1022326 (-)
RNA-Seq Expression	Cp4.1LG08g05130
Synteny	Cp4.1LG08g05130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCATTTACAAGAACTGTAAGCAGTCAAAGTTCACTTTCTCCCGCCAATGGAAGAAAACTCTTCTCTTTCGCCTGATCGACGTTTCTAGAACCGCAGCCGATTACGGATAGATGCGCTAGCTGAGCATTCCAGTGATTCCACTCCTCAAATTCTTTCTTTCTGTTGAATATAGCGTTTGATTTTTGCGCAGATTCCTTCTGATTTTCAGCTGAACAGCTGCTAAAACCCTAGCTGAAAGTTGATCTGTATTAGTTCAGGGTTTCTTGTTTTTCCATCTTCTGCAAGATGAGTACCATGAAGTTTTGCCGGGAATGGTATGTGTTAGAGTTTAATGTCGCATATGACTCTTGTTCTTCTGCGTTGATTAGTTTAAGTTGTTGAAAAATGTTGAGAATATGGAAATTCTTATTTTGCAGTAACAACATTCTCTATCCGAAGGAGGATAGGGATGAGAAGATTCTTCTCTATGCGTGTCGCAACTGTGATCACCAGGTAACCTTCTCCTTCTTTTCATTTCAACTTTCTATTCTAACTTCGTGAACGTTTTAGGTTTATTAGTTAGTCTTTCATTTCTAATGTAATAGTTTACGACTTACGAGTACGATGTTCTCTCTATATATTTGTCGGGTCTCTGGTGAAACCTTTAGCTATCGTTTTGTAGTTCAAATCAAATATCATTCTGCTTCTGGATGTGAGTTGCCCTACTTTATAGTAATTTTAACCTAGGACAACGATATTTGGTTCTGATTCGTGATTATGCCTTCAGATACTCAAGGTTGTCACTTTCACTCGTCACCCTGTTAAGTGTTCCTGTCGTCTTATCATCTCTGTTGTTAGCTTACCCTTCTCTGAATTTGAAGGACATACTATCCCATTGTTCTTGGTTGCTTTTGTAGTTCATTTCGGTATAATAGTTTTCAGGAAGGAACAATGTAAGAAGATTATGATTTAACTAATTCTCATCTTTTGATGACATGTCAACGGGTCCATTACAGTTCTTAGTTGGAGATATGCATGTACATCAGTATAAATATAGATCTAGACAAATGCTAGAAACAGCTACTCGTTTCATTTAATCTAGGTGAGGGAATATAACTTCTGTGCTGACGGTTAATTCAGCCTTTATAAAATTATTAGGATAGTATTACTAATTTAATTCTGAACGATGCAAGTTTGGGCCATTCTTTAGTTGATATTAGTGTTAACTCACTCCCTTAGGTCGTGGAATCGTTAAAGTTAATCTTCACGGATGGCTTTTGATTTCCTGGTTCTTTTGAATTTATTTGGGTTCTGAAATTCTTTACTAATTGAGTTGCATATTTTCTCTACCTCTAGTCAATGTATGTTTTCCTGATGGATCGTTGTTGGAAACTTCCTTTCTATTTTCTTGTAGCCGAGTAGCTTTTATTTTTGCCTACTGGAAGATAGACCTGTATCTGTACACTGAAATCAATATCCTCCCTTCTTTTCTTCTGATTCGACTTACTGATACTCCCTTCCATGTATTGACATGTTTTAATTTCTAGGACTTGATGGTTTCCTTCCCCCTTATTCTGACCATTAATTCTCATGTTTTGTTTTAAATTTCTGTTTGCAGGAAGTTGCTGACAATAACTGTGTCTATAGGAATGAGATTCATCACGCCGTAGGGGAACGCACTCAAGTTCTGCAAGATGTTGCTGCGGATCCAACACTCCCTCGCACAAAAGCTGTCCGATGTGCTCAATGCAACCATGGAGAAGCTGTTTTCTTCCAGGTTCACTTCCTTTTTATTTCCTAACTCTGTGTTGCTAGGCTTGAGCTTTCTTCTTCCCTCTCTTGATTTCATCAGTGTTACATTTTCCAACCCAAGCTTCATTCGTTCTTAACTCCCAAAAGTTGTAGTTTGTTCTAAATTACATGCCACATCATTATCTTAATTGGGCTGTGAATACCGCCGGTAAGGTTTTCTTGAATGAAATGTGAACAGTCTTCTTTTGTTGGATTTTTGTAGGCTGCTAGAGGTTACCAATTTTGATTTGCATCATTTCATCATGTTCATACTTATATCTAGCCATGATCTCATTGCATAATTTTATGCAGGCCACTGCCAGAGGGGAGGAAGGTATGACATTATTCTTCGTTTGCTGCAATCCAAATTGTGGCCACAGGTGGAGAGATTGATGTCAAATATGTGCTGAACATATGTTTACTTCATTGACTCTTGGTATGTCATCAAGTGTTTTAACAATCTTATGCTTAAAGACGTCTTTTTTGGCATGGGGTGTACAATTGTACTGATTGTCAATGTGGGTTGATGAGGACCACGAACTTCAACTAAGTCTTATTTTATAGATCTTAATTTTTATGAAGATTTCATCATTACCATAAAGTTTTGATATTTATTGAACCCTTTGTCTATGGACATACTAAAAGAATATTGAACAAAAAGATTGGTCTAAATTTGTAGGCATCAACCACCGGAGCAATTGGGAGTGCTGAATACTGATTTTTCATTTGTTATTGCTGTGGATGTGAAAGATAAAGAGTATTGTATACACAAATGAATCCGGGTGAAAGATGCTTTCCCTCTCTAATTTCCTAAAGGATTTGAATGAAAGGCATTGATTTGATCAAATAGGGAAAAAGAATTATCTACAATCAAGATAAATAGCCAAAGTGAGCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCTTCAACCTAACATTGGCCAATAATTTCTACCAAAATTCTTAGAATGCTAAGAGGCGTATTGTACAAGAATCTACAAAGGTGATACGTTGCGACTAAACCAGTCCGACAATCGTCTAATTTTCTTCGACATGTCTTCATTCTTTGCCACGAATGACTCGAAATTTGATAGCATTACCATGAAGTCGTGCTTCAATGCTTCCAAGCTTCGGTAGTAATCATTCTGTAATCTTTCCTGGATTATCTCAAGGCACAATGGTACAGGAAACCTATACATACATGTACAAAAGGCCAAAATTACATTCGAATACCGTATATACGGGTCTAGGGAGTTAAGTTTCTCGGAAGATGGATCAAGAAATTGATAGCAAATGGATTCATGAAAGTACCTGTTCTTGTATTGTGTCTTTCGTGCGAGAAGCATCAAATCTTGAATCCCGTAACGACCCTGAGATTTGAAGGACAACATCAGGTTATACCCATTCAAAAGGATATAAACAGAAAACATAATAACCTTGAAGAAGCAGACTACCTGCATAGAAGTCGACGTTAATTGGTCGAAGGCAGTTAACAACTTCGCTTTGTTTTCGTCGTCTATTCGAGGCTGATCCCACTGAGTAACAGTATCATACAGCTCCCAAGGACTATGTAAATGTGGTTCTGCAGGATCACTCCTATACTTAATTGTGTACCTCTCCCAAGGACTTTCTGGATACTCCAAAGATTTTGCCTGCACGGAGACAATCCGACCATCCCACCAACTACCATCTACTCCGACGTCGTTTTTCCACCACACTTTGCACTTATCCCTGAATGTCCAATTCCTCTGCATTGCCGCTTCAAACCGAGTTCTTTCGACTAAGAAGTCGGGGAAACTAGTCAACTCGGGCAGAGTTAACTTCAAAGATTGGAGGTATACATGGGAAGTAGGATCTATGAACTTGAGTAGCATTTTACAGCAACTATCTCCAGAACCTGCAGAAGTAGAATAAACAAGCTCGACAACCTTACAGAACTCAACCGCTCGTACAGGTCCCCGGATTGAGGTCCAAGGTCCGGTGTCTTTTGTGTGATAGTAATTTGTACAACAGTGATCTATGTAT

mRNA sequence

CCATTTACAAGAACTGTAAGCAGTCAAAGTTCACTTTCTCCCGCCAATGGAAGAAAACTCTTCTCTTTCGCCTGATCGACGTTTCTAGAACCGCAGCCGATTACGGATAGATGCGCTAGCTGAGCATTCCAGTGATTCCACTCCTCAAATTCTTTCTTTCTGTTGAATATAGCGTTTGATTTTTGCGCAGATTCCTTCTGATTTTCAGCTGAACAGCTGCTAAAACCCTAGCTGAAAGTTGATCTGTATTAGTTCAGGGTTTCTTGTTTTTCCATCTTCTGCAAGATGAGTACCATGAAGTTTTGCCGGGAATGTAACAACATTCTCTATCCGAAGGAGGATAGGGATGAGAAGATTCTTCTCTATGCGTGTCGCAACTGTGATCACCAGATACTCAAGGTTGTCACTTTCACTCGTCACCCTGTTAAGTGTTCCTGTCGTCTTATCATCTCTGTTGTTAGCTTACCCTTCTCTGAATTTGAAGGACATACTATCCCATTGTTCTTGGTTGCTTTTGTAGTTCATTTCGGTATAATAGTTTTCAGGAAGGAACAATTCAATGTATGTTTTCCTGATGGATCGTTGTTGGAAACTTCCTTTCTATTTTCTTGTAGCCGAGTAGCTTTTATTTTTGCCTACTGGAAGATAGACCTGTATCTGTACACTGAAATCAATATCCTCCCTTCTTTTCTTCTGATTCGACTTACTGATACTCCCTTCCATGAAGTTGCTGACAATAACTGTGTCTATAGGAATGAGATTCATCACGCCGTAGGGGAACGCACTCAAGTTCTGCAAGATGTTGCTGCGGATCCAACACTCCCTCGCACAAAAGCTGTCCGATGTGCTCAATGCAACCATGGAGAAGCTGTTTTCTTCCAGGCCACTGCCAGAGGGGAGGAAGGTATGACATTATTCTTCGTTTGCTGCAATCCAAATTGTGGCCACAGGTGGAGAGATTGATGTCAAATATGTGCTGAACATATGTTTACTTCATTGACTCTTGGTATGTCATCAAGTGTTTTAACAATCTTATGCTTAAAGACGTCTTTTTTGGCATGGGGTGTACAATTGTACTGATTGTCAATGTGGGTTGATGAGGACCACGAACTTCAACTAAGTCTTATTTTATAGATCTTAATTTTTATGAAGATTTCATCATTACCATAAAGTTTTGATATTTATTGAACCCTTTGTCTATGGACATACTAAAAGAATATTGAACAAAAAGATTGGTCTAAATTTGTAGGCATCAACCACCGGAGCAATTGGGAGTGCTGAATACTGATTTTTCATTTGTTATTGCTGTGGATGTGAAAGATAAAGAGTATTGTATACACAAATGAATCCGGGTGAAAGATGCTTTCCCTCTCTAATTTCCTAAAGGATTTGAATGAAAGGCATTGATTTGATCAAATAGGGAAAAAGAATTATCTACAATCAAGATAAATAGCCAAAGTGAGCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCTTCAACCTAACATTGGCCAATAATTTCTACCAAAATTCTTAGAATGCTAAGAGGCGTATTGTACAAGAATCTACAAAGGTGATACGTTGCGACTAAACCAGTCCGACAATCGTCTAATTTTCTTCGACATGTCTTCATTCTTTGCCACGAATGACTCGAAATTTGATAGCATTACCATGAAGTCGTGCTTCAATGCTTCCAAGCTTCGGTAGTAATCATTCTGTAATCTTTCCTGGATTATCTCAAGGCACAATGGTACAGGAAACCTATACATACATGTACAAAAGGCCAAAATTACATTCGAATACCGTATATACGGGTCTAGGGAGTTAAGTTTCTCGGAAGATGGATCAAGAAATTGATAGCAAATGGATTCATGAAAGTACCTGTTCTTGTATTGTGTCTTTCGTGCGAGAAGCATCAAATCTTGAATCCCGTAACGACCCTGAGATTTGAAGGACAACATCAGGTTATACCCATTCAAAAGGATATAAACAGAAAACATAATAACCTTGAAGAAGCAGACTACCTGCATAGAAGTCGACGTTAATTGGTCGAAGGCAGTTAACAACTTCGCTTTGTTTTCGTCGTCTATTCGAGGCTGATCCCACTGAGTAACAGTATCATACAGCTCCCAAGGACTATGTAAATGTGGTTCTGCAGGATCACTCCTATACTTAATTGTGTACCTCTCCCAAGGACTTTCTGGATACTCCAAAGATTTTGCCTGCACGGAGACAATCCGACCATCCCACCAACTACCATCTACTCCGACGTCGTTTTTCCACCACACTTTGCACTTATCCCTGAATGTCCAATTCCTCTGCATTGCCGCTTCAAACCGAGTTCTTTCGACTAAGAAGTCGGGGAAACTAGTCAACTCGGGCAGAGTTAACTTCAAAGATTGGAGGTATACATGGGAAGTAGGATCTATGAACTTGAGTAGCATTTTACAGCAACTATCTCCAGAACCTGCAGAAGTAGAATAAACAAGCTCGACAACCTTACAGAACTCAACCGCTCGTACAGGTCCCCGGATTGAGGTCCAAGGTCCGGTGTCTTTTGTGTGATAGTAATTTGTACAACAGTGATCTATGTAT

Coding sequence (CDS)

ATGAGTACCATGAAGTTTTGCCGGGAATGTAACAACATTCTCTATCCGAAGGAGGATAGGGATGAGAAGATTCTTCTCTATGCGTGTCGCAACTGTGATCACCAGATACTCAAGGTTGTCACTTTCACTCGTCACCCTGTTAAGTGTTCCTGTCGTCTTATCATCTCTGTTGTTAGCTTACCCTTCTCTGAATTTGAAGGACATACTATCCCATTGTTCTTGGTTGCTTTTGTAGTTCATTTCGGTATAATAGTTTTCAGGAAGGAACAATTCAATGTATGTTTTCCTGATGGATCGTTGTTGGAAACTTCCTTTCTATTTTCTTGTAGCCGAGTAGCTTTTATTTTTGCCTACTGGAAGATAGACCTGTATCTGTACACTGAAATCAATATCCTCCCTTCTTTTCTTCTGATTCGACTTACTGATACTCCCTTCCATGAAGTTGCTGACAATAACTGTGTCTATAGGAATGAGATTCATCACGCCGTAGGGGAACGCACTCAAGTTCTGCAAGATGTTGCTGCGGATCCAACACTCCCTCGCACAAAAGCTGTCCGATGTGCTCAATGCAACCATGGAGAAGCTGTTTTCTTCCAGGCCACTGCCAGAGGGGAGGAAGGTATGACATTATTCTTCGTTTGCTGCAATCCAAATTGTGGCCACAGGTGGAGAGATTGA

Protein sequence

MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQILKVVTFTRHPVKCSCRLIISVVSLPFSEFEGHTIPLFLVAFVVHFGIIVFRKEQFNVCFPDGSLLETSFLFSCSRVAFIFAYWKIDLYLYTEINILPSFLLIRLTDTPFHEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD

Homology

[Close]

BLAST of Cp4.1LG08g05130 vs. ExPASy Swiss-Prot
Match: Q6NLH0 (DNA-directed RNA polymerases II, IV and V subunit 9A OS=Arabidopsis thaliana OX=3702 GN=NRPB9A PE=1 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 4.6e-46
Identity = 99/225 (44.00%), Postives = 110/225 (48.89%), Query Frame = 0


Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQILKVVTFTRHPVKCSCRLIISVVSL 60
           MSTMKFCRECNNILYPKED+++KILLYACRNCDHQ                         
Sbjct: 1   MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQ------------------------- 60

Query: 61  PFSEFEGHTIPLFLVAFVVHFGIIVFRKEQFNVCFPDGSLLETSFLFSCSRVAFIFAYWK 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 114

Query: 121 IDLYLYTEINILPSFLLIRLTDTPFHEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLP 180
                                     EVADN+CVYRNE+HH+V ERTQ+L DVA+DPTLP
Sbjct: 121 --------------------------EVADNSCVYRNEVHHSVSERTQILTDVASDPTLP 114

Query: 181 RTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 226
           RTKAVRC++C H EAVFFQATARGEEGMTLFFVCCNPNCGHRWR+
Sbjct: 181 RTKAVRCSKCQHREAVFFQATARGEEGMTLFFVCCNPNCGHRWRE 114

[Close]

BLAST of Cp4.1LG08g05130 vs. ExPASy Swiss-Prot
Match: Q8L5V0 (DNA-directed RNA polymerases II, IV and V subunit 9B OS=Arabidopsis thaliana OX=3702 GN=NRPB9B PE=1 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 7.8e-46
Identity = 98/225 (43.56%), Postives = 108/225 (48.00%), Query Frame = 0


Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQILKVVTFTRHPVKCSCRLIISVVSL 60
           MSTMKFCRECNNILYPKED+++ ILLYACRNCDHQ                         
Sbjct: 1   MSTMKFCRECNNILYPKEDKEQSILLYACRNCDHQ------------------------- 60

Query: 61  PFSEFEGHTIPLFLVAFVVHFGIIVFRKEQFNVCFPDGSLLETSFLFSCSRVAFIFAYWK 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 114

Query: 121 IDLYLYTEINILPSFLLIRLTDTPFHEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLP 180
                                     E ADNNCVYRNE+HH+V E+TQ+L DVA+DPTLP
Sbjct: 121 --------------------------EAADNNCVYRNEVHHSVSEQTQILSDVASDPTLP 114

Query: 181 RTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 226
           RTKAVRCA+C HGEAVFFQATARGEEGMTLFFVCCNPNC HRWR+
Sbjct: 181 RTKAVRCAKCQHGEAVFFQATARGEEGMTLFFVCCNPNCSHRWRE 114

[Close]

BLAST of Cp4.1LG08g05130 vs. ExPASy Swiss-Prot
Match: Q32P73 (DNA-directed RNA polymerase II subunit RPB9 OS=Bos taurus OX=9913 GN=POLR2I PE=1 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.8e-24
Identity = 66/223 (29.60%), Postives = 90/223 (40.36%), Query Frame = 0


Query: 4   MKFCRECNNILYPKEDRDEKILLYACRNCDHQILKVVTFTRHPVKCSCRLIISVVSLPFS 63
           ++FC+ECNN+LYPKED++ +ILLYACRNCD+Q                            
Sbjct: 14  IRFCQECNNMLYPKEDKENRILLYACRNCDYQ---------------------------- 73

Query: 64  EFEGHTIPLFLVAFVVHFGIIVFRKEQFNVCFPDGSLLETSFLFSCSRVAFIFAYWKIDL 123
                                                                       
Sbjct: 74  ------------------------------------------------------------ 125

Query: 124 YLYTEINILPSFLLIRLTDTPFHEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTK 183
                                  + ADN+C+Y N+I H V E TQ++ DV+ DPTLPRT+
Sbjct: 134 -----------------------QEADNSCIYVNKITHEVDELTQIIADVSQDPTLPRTE 125

Query: 184 AVRCAQCNHGEAVFFQA-TARGEEGMTLFFVCCNPNCGHRWRD 226
              C +C H EAVFFQ+ +AR E+ M L++VC  P+CGHRW +
Sbjct: 194 DHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125

[Close]

BLAST of Cp4.1LG08g05130 vs. ExPASy Swiss-Prot
Match: P36954 (DNA-directed RNA polymerase II subunit RPB9 OS=Homo sapiens OX=9606 GN=POLR2I PE=1 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.8e-24
Identity = 66/223 (29.60%), Postives = 90/223 (40.36%), Query Frame = 0


Query: 4   MKFCRECNNILYPKEDRDEKILLYACRNCDHQILKVVTFTRHPVKCSCRLIISVVSLPFS 63
           ++FC+ECNN+LYPKED++ +ILLYACRNCD+Q                            
Sbjct: 14  IRFCQECNNMLYPKEDKENRILLYACRNCDYQ---------------------------- 73

Query: 64  EFEGHTIPLFLVAFVVHFGIIVFRKEQFNVCFPDGSLLETSFLFSCSRVAFIFAYWKIDL 123
                                                                       
Sbjct: 74  ------------------------------------------------------------ 125

Query: 124 YLYTEINILPSFLLIRLTDTPFHEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTK 183
                                  + ADN+C+Y N+I H V E TQ++ DV+ DPTLPRT+
Sbjct: 134 -----------------------QEADNSCIYVNKITHEVDELTQIIADVSQDPTLPRTE 125

Query: 184 AVRCAQCNHGEAVFFQA-TARGEEGMTLFFVCCNPNCGHRWRD 226
              C +C H EAVFFQ+ +AR E+ M L++VC  P+CGHRW +
Sbjct: 194 DHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125

[Close]

BLAST of Cp4.1LG08g05130 vs. ExPASy Swiss-Prot
Match: P60898 (DNA-directed RNA polymerase II subunit RPB9 OS=Mus musculus OX=10090 GN=Polr2i PE=1 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.8e-24
Identity = 66/223 (29.60%), Postives = 90/223 (40.36%), Query Frame = 0


Query: 4   MKFCRECNNILYPKEDRDEKILLYACRNCDHQILKVVTFTRHPVKCSCRLIISVVSLPFS 63
           ++FC+ECNN+LYPKED++ +ILLYACRNCD+Q                            
Sbjct: 14  IRFCQECNNMLYPKEDKENRILLYACRNCDYQ---------------------------- 73

Query: 64  EFEGHTIPLFLVAFVVHFGIIVFRKEQFNVCFPDGSLLETSFLFSCSRVAFIFAYWKIDL 123
                                                                       
Sbjct: 74  ------------------------------------------------------------ 125

Query: 124 YLYTEINILPSFLLIRLTDTPFHEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTK 183
                                  + ADN+C+Y N+I H V E TQ++ DV+ DPTLPRT+
Sbjct: 134 -----------------------QEADNSCIYVNKITHEVDELTQIIADVSQDPTLPRTE 125

Query: 184 AVRCAQCNHGEAVFFQA-TARGEEGMTLFFVCCNPNCGHRWRD 226
              C +C H EAVFFQ+ +AR E+ M L++VC  P+CGHRW +
Sbjct: 194 DHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125

[Close]

BLAST of Cp4.1LG08g05130 vs. NCBI nr
Match: EXB55730.1 (DNA-directed RNA polymerase II subunit [Morus notabilis])

HSP 1 Score: 220 bits (560), Expect = 4.61e-69
Identity = 121/227 (53.30%), Postives = 138/227 (60.79%), Query Frame = 0


Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQ-ILKVVTFTRHPVKCSCRL-IISVV 60
           MSTM FCRECNNILYPKEDR  K LLYACRNCDHQ + +     R+ +  S R  I+  V
Sbjct: 1   MSTMIFCRECNNILYPKEDRANKTLLYACRNCDHQEVAENNCVFRNELNLSVRAQILQDV 60

Query: 61  SLPFSEFEGHTIPLFLVAFVVHFGIIVFRKEQFNVCFPDGSLLETSFLFSCSRVAFIFAY 120
           +   +     T+     A   H   + F+    N+ +P     +   L++C         
Sbjct: 61  TADPTLPRTRTVRC---AQCSHEQAVFFQHSN-NILYPKEDRDQKILLYACRNC------ 120

Query: 121 WKIDLYLYTEINILPSFLLIRLTDTPFHEVADNNCVYRNEIHHAVGERTQVLQDVAADPT 180
                                       EVADNNCVYRNEIHH+VGERTQVLQDVAADPT
Sbjct: 121 -------------------------DHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPT 180

Query: 181 LPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 225
           LPRTK+VRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 181 LPRTKSVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 192

[Close]

BLAST of Cp4.1LG08g05130 vs. NCBI nr
Match: RVW39915.1 (DNA-directed RNA polymerases II, IV and V subunit 9A [Vitis vinifera])

HSP 1 Score: 215 bits (548), Expect = 5.70e-68
Identity = 116/225 (51.56%), Postives = 126/225 (56.00%), Query Frame = 0


Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQILKVVTFTRHPVKCSCRLIISVVSL 60
           MSTMKFCRECNNILYPKEDR++KILLYACRNCDHQ                         
Sbjct: 1   MSTMKFCRECNNILYPKEDREQKILLYACRNCDHQ------------------------- 60

Query: 61  PFSEFEGHTIPLFLVAFVVHFGIIVFRKEQFNVCFPDGSLLETSFLFSCSRVAFIFAYWK 120
                                          +VC     L++                  
Sbjct: 61  -------------------------------SVCAGQQFLIK------------------ 120

Query: 121 IDLYLYTEINILPSFLLIRLTDTPFHEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLP 180
                     I P  LL  L +    EVA+NNCVYRNEIHH+VGERTQVLQDVAADPTLP
Sbjct: 121 ----------ITPCSLLSILFNNTVQEVAENNCVYRNEIHHSVGERTQVLQDVAADPTLP 141

Query: 181 RTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 225
           RTK+VRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCG+RWRD
Sbjct: 181 RTKSVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGYRWRD 141

[Close]

BLAST of Cp4.1LG08g05130 vs. NCBI nr
Match: XP_008438942.1 (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Cucumis melo] >XP_022137993.1 DNA-directed RNA polymerases II, IV and V subunit 9A isoform X2 [Momordica charantia] >XP_022939240.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Cucurbita moschata] >XP_022972305.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Cucurbita maxima] >XP_022972306.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Cucurbita maxima] >XP_023539282.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Cucurbita pepo subsp. pepo] >XP_023539283.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Cucurbita pepo subsp. pepo] >XP_031737720.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Cucumis sativus] >XP_038880081.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Benincasa hispida] >KAA0049537.1 DNA-directed RNA polymerase, M/15kDa subunit [Cucumis melo var. makuwa] >KAG7029011.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Cucurbita argyrosperma subsp. argyrosperma] >TYK16215.1 DNA-directed RNA polymerase, M/15kDa subunit [Cucumis melo var. makuwa])

HSP 1 Score: 207 bits (526), Expect = 5.20e-65
Identity = 114/225 (50.67%), Postives = 114/225 (50.67%), Query Frame = 0


Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQILKVVTFTRHPVKCSCRLIISVVSL 60
           MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQ                         
Sbjct: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQ------------------------- 60

Query: 61  PFSEFEGHTIPLFLVAFVVHFGIIVFRKEQFNVCFPDGSLLETSFLFSCSRVAFIFAYWK 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 114

Query: 121 IDLYLYTEINILPSFLLIRLTDTPFHEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLP 180
                                     EVADNNCVYRNEIHHAVGERTQVLQDVAADPTLP
Sbjct: 121 --------------------------EVADNNCVYRNEIHHAVGERTQVLQDVAADPTLP 114

Query: 181 RTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 225
           RTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 181 RTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114

[Close]

BLAST of Cp4.1LG08g05130 vs. NCBI nr
Match: XP_030503042.1 (DNA-directed RNA polymerases II, IV and V subunit 9A [Cannabis sativa] >XP_030503043.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Cannabis sativa] >KAF4356255.1 hypothetical protein F8388_000702 [Cannabis sativa] >KAF4357777.1 hypothetical protein G4B88_025012 [Cannabis sativa])

HSP 1 Score: 206 bits (523), Expect = 1.48e-64
Identity = 113/225 (50.22%), Postives = 114/225 (50.67%), Query Frame = 0


Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQILKVVTFTRHPVKCSCRLIISVVSL 60
           MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQ                         
Sbjct: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQ------------------------- 60

Query: 61  PFSEFEGHTIPLFLVAFVVHFGIIVFRKEQFNVCFPDGSLLETSFLFSCSRVAFIFAYWK 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 114

Query: 121 IDLYLYTEINILPSFLLIRLTDTPFHEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLP 180
                                     EVADNNCVYRNEIHH+VGERTQVLQDVAADPTLP
Sbjct: 121 --------------------------EVADNNCVYRNEIHHSVGERTQVLQDVAADPTLP 114

Query: 181 RTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 225
           RTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 181 RTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114

[Close]

BLAST of Cp4.1LG08g05130 vs. NCBI nr
Match: XP_024019992.1 (DNA-directed RNA polymerases II, IV and V subunit 9A [Morus notabilis])

HSP 1 Score: 203 bits (517), Expect = 1.21e-63
Identity = 111/225 (49.33%), Postives = 114/225 (50.67%), Query Frame = 0


Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQILKVVTFTRHPVKCSCRLIISVVSL 60
           MSTMKFCRECNNILYPKEDRD+KILLYACRNCDHQ                         
Sbjct: 1   MSTMKFCRECNNILYPKEDRDQKILLYACRNCDHQ------------------------- 60

Query: 61  PFSEFEGHTIPLFLVAFVVHFGIIVFRKEQFNVCFPDGSLLETSFLFSCSRVAFIFAYWK 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 114

Query: 121 IDLYLYTEINILPSFLLIRLTDTPFHEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLP 180
                                     EVADNNCVYRNEIHH+VGERTQVLQDVAADPTLP
Sbjct: 121 --------------------------EVADNNCVYRNEIHHSVGERTQVLQDVAADPTLP 114

Query: 181 RTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 225
           RTK+VRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 181 RTKSVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114

[Close]

BLAST of Cp4.1LG08g05130 vs. ExPASy TrEMBL
Match: W9QW59 (DNA-directed RNA polymerase II subunit OS=Morus notabilis OX=981085 GN=L484_007725 PE=3 SV=1)

HSP 1 Score: 220 bits (560), Expect = 2.23e-69
Identity = 121/227 (53.30%), Postives = 138/227 (60.79%), Query Frame = 0


Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQ-ILKVVTFTRHPVKCSCRL-IISVV 60
           MSTM FCRECNNILYPKEDR  K LLYACRNCDHQ + +     R+ +  S R  I+  V
Sbjct: 1   MSTMIFCRECNNILYPKEDRANKTLLYACRNCDHQEVAENNCVFRNELNLSVRAQILQDV 60

Query: 61  SLPFSEFEGHTIPLFLVAFVVHFGIIVFRKEQFNVCFPDGSLLETSFLFSCSRVAFIFAY 120
           +   +     T+     A   H   + F+    N+ +P     +   L++C         
Sbjct: 61  TADPTLPRTRTVRC---AQCSHEQAVFFQHSN-NILYPKEDRDQKILLYACRNC------ 120

Query: 121 WKIDLYLYTEINILPSFLLIRLTDTPFHEVADNNCVYRNEIHHAVGERTQVLQDVAADPT 180
                                       EVADNNCVYRNEIHH+VGERTQVLQDVAADPT
Sbjct: 121 -------------------------DHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPT 180

Query: 181 LPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 225
           LPRTK+VRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 181 LPRTKSVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 192

[Close]

BLAST of Cp4.1LG08g05130 vs. ExPASy TrEMBL
Match: A0A438DWM0 (DNA-directed RNA polymerase subunit OS=Vitis vinifera OX=29760 GN=NRPB9A PE=3 SV=1)

HSP 1 Score: 215 bits (548), Expect = 2.76e-68
Identity = 116/225 (51.56%), Postives = 126/225 (56.00%), Query Frame = 0


Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQILKVVTFTRHPVKCSCRLIISVVSL 60
           MSTMKFCRECNNILYPKEDR++KILLYACRNCDHQ                         
Sbjct: 1   MSTMKFCRECNNILYPKEDREQKILLYACRNCDHQ------------------------- 60

Query: 61  PFSEFEGHTIPLFLVAFVVHFGIIVFRKEQFNVCFPDGSLLETSFLFSCSRVAFIFAYWK 120
                                          +VC     L++                  
Sbjct: 61  -------------------------------SVCAGQQFLIK------------------ 120

Query: 121 IDLYLYTEINILPSFLLIRLTDTPFHEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLP 180
                     I P  LL  L +    EVA+NNCVYRNEIHH+VGERTQVLQDVAADPTLP
Sbjct: 121 ----------ITPCSLLSILFNNTVQEVAENNCVYRNEIHHSVGERTQVLQDVAADPTLP 141

Query: 181 RTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 225
           RTK+VRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCG+RWRD
Sbjct: 181 RTKSVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGYRWRD 141

[Close]

BLAST of Cp4.1LG08g05130 vs. ExPASy TrEMBL
Match: A0A6J1I879 (DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111470884 PE=3 SV=1)

HSP 1 Score: 207 bits (526), Expect = 2.52e-65
Identity = 114/225 (50.67%), Postives = 114/225 (50.67%), Query Frame = 0


Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQILKVVTFTRHPVKCSCRLIISVVSL 60
           MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQ                         
Sbjct: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQ------------------------- 60

Query: 61  PFSEFEGHTIPLFLVAFVVHFGIIVFRKEQFNVCFPDGSLLETSFLFSCSRVAFIFAYWK 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 114

Query: 121 IDLYLYTEINILPSFLLIRLTDTPFHEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLP 180
                                     EVADNNCVYRNEIHHAVGERTQVLQDVAADPTLP
Sbjct: 121 --------------------------EVADNNCVYRNEIHHAVGERTQVLQDVAADPTLP 114

Query: 181 RTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 225
           RTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 181 RTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114

[Close]

BLAST of Cp4.1LG08g05130 vs. ExPASy TrEMBL
Match: A0A5A7U5C7 (DNA-directed RNA polymerase subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001440 PE=3 SV=1)

HSP 1 Score: 207 bits (526), Expect = 2.52e-65
Identity = 114/225 (50.67%), Postives = 114/225 (50.67%), Query Frame = 0


Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQILKVVTFTRHPVKCSCRLIISVVSL 60
           MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQ                         
Sbjct: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQ------------------------- 60

Query: 61  PFSEFEGHTIPLFLVAFVVHFGIIVFRKEQFNVCFPDGSLLETSFLFSCSRVAFIFAYWK 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 114

Query: 121 IDLYLYTEINILPSFLLIRLTDTPFHEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLP 180
                                     EVADNNCVYRNEIHHAVGERTQVLQDVAADPTLP
Sbjct: 121 --------------------------EVADNNCVYRNEIHHAVGERTQVLQDVAADPTLP 114

Query: 181 RTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 225
           RTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 181 RTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114

[Close]

BLAST of Cp4.1LG08g05130 vs. ExPASy TrEMBL
Match: A0A0A0L816 (DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_3G166240 PE=3 SV=1)

HSP 1 Score: 207 bits (526), Expect = 2.52e-65
Identity = 114/225 (50.67%), Postives = 114/225 (50.67%), Query Frame = 0


Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQILKVVTFTRHPVKCSCRLIISVVSL 60
           MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQ                         
Sbjct: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQ------------------------- 60

Query: 61  PFSEFEGHTIPLFLVAFVVHFGIIVFRKEQFNVCFPDGSLLETSFLFSCSRVAFIFAYWK 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 114

Query: 121 IDLYLYTEINILPSFLLIRLTDTPFHEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLP 180
                                     EVADNNCVYRNEIHHAVGERTQVLQDVAADPTLP
Sbjct: 121 --------------------------EVADNNCVYRNEIHHAVGERTQVLQDVAADPTLP 114

Query: 181 RTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 225
           RTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
Sbjct: 181 RTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114

[Close]

BLAST of Cp4.1LG08g05130 vs. TAIR 10
Match: AT3G16980.1 (RNA polymerases M/15 Kd subunit )

HSP 1 Score: 186.0 bits (471), Expect = 3.2e-47
Identity = 99/225 (44.00%), Postives = 110/225 (48.89%), Query Frame = 0


Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQILKVVTFTRHPVKCSCRLIISVVSL 60
           MSTMKFCRECNNILYPKED+++KILLYACRNCDHQ                         
Sbjct: 1   MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQ------------------------- 60

Query: 61  PFSEFEGHTIPLFLVAFVVHFGIIVFRKEQFNVCFPDGSLLETSFLFSCSRVAFIFAYWK 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 114

Query: 121 IDLYLYTEINILPSFLLIRLTDTPFHEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLP 180
                                     EVADN+CVYRNE+HH+V ERTQ+L DVA+DPTLP
Sbjct: 121 --------------------------EVADNSCVYRNEVHHSVSERTQILTDVASDPTLP 114

Query: 181 RTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 226
           RTKAVRC++C H EAVFFQATARGEEGMTLFFVCCNPNCGHRWR+
Sbjct: 181 RTKAVRCSKCQHREAVFFQATARGEEGMTLFFVCCNPNCGHRWRE 114

[Close]

BLAST of Cp4.1LG08g05130 vs. TAIR 10
Match: AT4G16265.1 (RNA polymerases M/15 Kd subunit )

HSP 1 Score: 185.3 bits (469), Expect = 5.5e-47
Identity = 98/225 (43.56%), Postives = 108/225 (48.00%), Query Frame = 0


Query: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQILKVVTFTRHPVKCSCRLIISVVSL 60
           MSTMKFCRECNNILYPKED+++ ILLYACRNCDHQ                         
Sbjct: 1   MSTMKFCRECNNILYPKEDKEQSILLYACRNCDHQ------------------------- 60

Query: 61  PFSEFEGHTIPLFLVAFVVHFGIIVFRKEQFNVCFPDGSLLETSFLFSCSRVAFIFAYWK 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 114

Query: 121 IDLYLYTEINILPSFLLIRLTDTPFHEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLP 180
                                     E ADNNCVYRNE+HH+V E+TQ+L DVA+DPTLP
Sbjct: 121 --------------------------EAADNNCVYRNEVHHSVSEQTQILSDVASDPTLP 114

Query: 181 RTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 226
           RTKAVRCA+C HGEAVFFQATARGEEGMTLFFVCCNPNC HRWR+
Sbjct: 181 RTKAVRCAKCQHGEAVFFQATARGEEGMTLFFVCCNPNCSHRWRE 114

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g05130 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NLH0	4.6e-46	44.00	DNA-directed RNA polymerases II, IV and V subunit 9A OS=Arabidopsis thaliana OX=...	[more]
Q8L5V0	7.8e-46	43.56	DNA-directed RNA polymerases II, IV and V subunit 9B OS=Arabidopsis thaliana OX=...	[more]
Q32P73	3.8e-24	29.60	DNA-directed RNA polymerase II subunit RPB9 OS=Bos taurus OX=9913 GN=POLR2I PE=1...	[more]
P36954	3.8e-24	29.60	DNA-directed RNA polymerase II subunit RPB9 OS=Homo sapiens OX=9606 GN=POLR2I PE...	[more]
P60898	3.8e-24	29.60	DNA-directed RNA polymerase II subunit RPB9 OS=Mus musculus OX=10090 GN=Polr2i P...	[more]

BLAST of Cp4.1LG08g05130 vs. NCBI nr


Match Name	E-value	Identity	Description
EXB55730.1	4.61e-69	53.30	DNA-directed RNA polymerase II subunit [Morus notabilis]	[more]
RVW39915.1	5.70e-68	51.56	DNA-directed RNA polymerases II, IV and V subunit 9A [Vitis vinifera]	[more]
XP_008438942.1	5.20e-65	50.67	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Cucumis melo] >...	[more]
XP_030503042.1	1.48e-64	50.22	DNA-directed RNA polymerases II, IV and V subunit 9A [Cannabis sativa] >XP_03050...	[more]
XP_024019992.1	1.21e-63	49.33	DNA-directed RNA polymerases II, IV and V subunit 9A [Morus notabilis]	[more]

BLAST of Cp4.1LG08g05130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
W9QW59	2.23e-69	53.30	DNA-directed RNA polymerase II subunit OS=Morus notabilis OX=981085 GN=L484_0077...	[more]
A0A438DWM0	2.76e-68	51.56	DNA-directed RNA polymerase subunit OS=Vitis vinifera OX=29760 GN=NRPB9A PE=3 SV...	[more]
A0A6J1I879	2.52e-65	50.67	DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111470884 ...	[more]
A0A5A7U5C7	2.52e-65	50.67	DNA-directed RNA polymerase subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A0A0L816	2.52e-65	50.67	DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_3G166240 P...	[more]

BLAST of Cp4.1LG08g05130 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G16980.1	3.2e-47	44.00	RNA polymerases M/15 Kd subunit	[more]
AT4G16265.1	5.5e-47	43.56	RNA polymerases M/15 Kd subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001529	DNA-directed RNA polymerase, M/15kDa subunit	SMART	SM00661	rpol9cneu	coord: 5..57 e-value: 1.9E-5 score: 34.1
IPR001529	DNA-directed RNA polymerase, M/15kDa subunit	PFAM	PF02150	RNA_POL_M_15KD	coord: 4..33 e-value: 1.6E-10 score: 40.7
IPR001222	Zinc finger, TFIIS-type	SMART	SM00440	Cys4_2	coord: 185..225 e-value: 2.3E-6 score: 37.2
IPR001222	Zinc finger, TFIIS-type	PFAM	PF01096	TFIIS_C	coord: 186..224 e-value: 1.9E-10 score: 40.4
IPR001222	Zinc finger, TFIIS-type	PROSITE	PS51133	ZF_TFIIS_2	coord: 183..224 score: 12.77014
None	No IPR available	GENE3D	2.20.25.10		coord: 158..225 e-value: 1.6E-29 score: 103.5
None	No IPR available	GENE3D	2.20.25.10		coord: 1..44 e-value: 8.6E-20 score: 72.1
None	No IPR available	PANTHER	PTHR11239:SF17	DNA-DIRECTED RNA POLYMERASE SUBUNIT	coord: 138..225
None	No IPR available	PANTHER	PTHR11239:SF17	DNA-DIRECTED RNA POLYMERASE SUBUNIT	coord: 1..36
None	No IPR available	SUPERFAMILY	57783	Zinc beta-ribbon	coord: 163..225
None	No IPR available	SUPERFAMILY	57783	Zinc beta-ribbon	coord: 1..36
IPR012164	DNA-directed RNA polymerase subunit/transcription factor S	PANTHER	PTHR11239	DNA-DIRECTED RNA POLYMERASE	coord: 1..36
IPR012164	DNA-directed RNA polymerase subunit/transcription factor S	PANTHER	PTHR11239	DNA-DIRECTED RNA POLYMERASE	coord: 138..225
IPR019761	DNA-directed RNA polymerase M, 15kDa subunit, conserved site	PROSITE	PS01030	RNA_POL_M_15KD	coord: 6..32
IPR034012	Pol II subunit B9, C-terminal zinc ribbon	CDD	cd10508	Zn-ribbon_RPB9	coord: 175..224 e-value: 1.45871E-22 score: 84.6121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g05130.1	Cp4.1LG08g05130.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006379	mRNA cleavage
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding