Cp4.1LG08g04200 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG08g04200
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	pre-rRNA-processing protein TSR2 homolog
Location	Cp4.1LG08: 1708072 .. 1708871 (+)
RNA-Seq Expression	Cp4.1LG08g04200
Synteny	Cp4.1LG08g04200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAGAGGAGAAAGAAAAATAAGATTTCTAGGGTTTGGAGGAAGGAGAAGACGAAGACAAAGCTCTGAGGTTAATCCATGGAGCCAAATAATGGATTAACCTCAATCAATCACGAGGCAGGATCAATCTCCAGCCTCGAAATGGCTATTTCGTCGGTGTTTTCTCGGTGGGACGGCCTTCAAATGGCCATTGATAACAAATGGGGCGGTGGCGATTCTCACCAGAAATCGCTGAATCTCGCCTCTGATGTCTTCTCTTGGTTCTCTNAGTTCTCCGCTTTTCTCTCCGCCCGATTCTGCCATTAATTTCTCAATTCAACCGCCCTCTCTCTCTCTCTCTGTCTCTCTCTCTGATAATTCAATTAGAAGAGGAGAAAGAAAAATAAGATTTCTAGGGTTTGGAGGAAGGAGAAGACGAAGACGAAGCTCTGAGGTTAATCCATGGAGCCGAATAATGGATTAACCTCAATCAATCACAAGGCAGGATCAATCTCCAGCCTCGAAATGGCTATTTCGTCGGTGTTTTCTCGGTGGGACGGCCTTCAAATGGCCATTGATAACAAATGGGGCGGTGGCGATTCTCACCAGAAATCGCTGAATCTCGCCTCTGATGTCTTCTCTTGGTTCTCTCAATCCAAACGTTGTTACATTAAAATTACCTTCCGGAGTTTCTCGATCTTCTTCCATGGATCTAATTCCGCTATGCTTCCTTCCATTGCAGCTCCCCTGTACGTGGAAGATCTGGAAAATTTGCTCCATGAACACCTAACGAATTATTGGATTACGACATCGAAAATACAC

mRNA sequence

AGAAGAGGAGAAAGAAAAATAAGATTTCTAGGGTTTGGAGGAAGGAGAAGACGAAGACAAAGCTCTGAGCCAAATAATGGATTAACCTCAATCAATCACGAGGCAGGATCAATCTCCAGCCTCGAAATGGCTATTTCGTCGGTGTTTTCTCGGTGGGACGGCCTTCAAATGGCCATTGATAACAAATGGGGCGGTGGCGATTCTCACCAGAAATCGCTGAATCTCGCCTCTGATGCAGGATCAATCTCCAGCCTCGAAATGGCTATTTCGTCGGTGTTTTCTCGGTGGGACGGCCTTCAAATGGCCATTGATAACAAATGGGGCGGTGGCGATTCTCACCAGAAATCGCTGAATCTCGCCTCTGATGTCTTCTCTTGGTTCTCTCAATCCAAACGTTGTTACATTAAAATTACCTTCCGGAGTTTCTCGATCTTCTTCCATGGATCTAATTCCGCTATGCTTCCTTCCATTGCAGCTCCCCTGTACGTGGAAGATCTGGAAAATTTGCTCCATGAACACCTAACGAATTATTGGATTACGACATCGAAAATACAC

Coding sequence (CDS)

AGAAGAGGAGAAAGAAAAATAAGATTTCTAGGGTTTGGAGGAAGGAGAAGACGAAGACAAAGCTCTGAGCCAAATAATGGATTAACCTCAATCAATCACGAGGCAGGATCAATCTCCAGCCTCGAAATGGCTATTTCGTCGGTGTTTTCTCGGTGGGACGGCCTTCAAATGGCCATTGATAACAAATGGGGCGGTGGCGATTCTCACCAGAAATCGCTGAATCTCGCCTCTGATGCAGGATCAATCTCCAGCCTCGAAATGGCTATTTCGTCGGTGTTTTCTCGGTGGGACGGCCTTCAAATGGCCATTGATAACAAATGGGGCGGTGGCGATTCTCACCAGAAATCGCTGAATCTCGCCTCTGATGTCTTCTCTTGGTTCTCTCAATCCAAACGTTGTTACATTAAAATTACCTTCCGGAGTTTCTCGATCTTCTTCCATGGATCTAATTCCGCTATGCTTCCTTCCATTGCAGCTCCCCTGTACGTGGAAGATCTGGAAAATTTGCTCCATGAACACCTAACGAATTATTGGATTACGACATCGAAAATACAC

Protein sequence

RRGERKIRFLGFGGRRRRRQSSEPNNGLTSINHEAGSISSLEMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDAGSISSLEMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSAMLPSIAAPLYVEDLENLLHEHLTNYWITTSKIH

Homology

[Close]

BLAST of Cp4.1LG08g04200 vs. NCBI nr
Match: XP_022949537.1 (uncharacterized protein LOC111452853 [Cucurbita moschata])

HSP 1 Score: 194 bits (492), Expect = 5.67e-60
Identity = 106/152 (69.74%), Postives = 107/152 (70.39%), Query Frame = 0


Query: 23  EPNNGLTSINHEAGSISSLEMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDAGSI 82
           EPNNGLTSINH+AGSISSLEMAISSVFSRWDGLQMAIDNKW                   
Sbjct: 2   EPNNGLTSINHKAGSISSLEMAISSVFSRWDGLQMAIDNKW------------------- 61

Query: 83  SSLEMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFSWFSQSKRCYIKITFRSF 142
                                    GGGDSHQKSLNLASDVFSWFSQSKRCYIKITFRSF
Sbjct: 62  -------------------------GGGDSHQKSLNLASDVFSWFSQSKRCYIKITFRSF 109

Query: 143 SIFFHGSNSAMLPSIAAPLYVEDLENLLHEHL 174
           SIFFHGSNSAMLPSIAAPLYVEDLENL HEHL
Sbjct: 122 SIFFHGSNSAMLPSIAAPLYVEDLENLRHEHL 109

[Close]

BLAST of Cp4.1LG08g04200 vs. NCBI nr
Match: KAG7028903.1 (hypothetical protein SDJN02_10085, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 182 bits (463), Expect = 1.35e-55
Identity = 91/94 (96.81%), Postives = 92/94 (97.87%), Query Frame = 0


Query: 79  AGSISSLEMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFSWFSQSKRCYIKIT 138
           AGSISSLEMAISSVFSRWDGLQMAID+KWGGGDSHQK LNLASDVFSWFSQSKRCYIKIT
Sbjct: 2   AGSISSLEMAISSVFSRWDGLQMAIDHKWGGGDSHQKPLNLASDVFSWFSQSKRCYIKIT 61

Query: 139 FRSFSIFFHGSNSAMLPSIAAPLYVEDLENLLHE 172
           FRSFSIFFHGSNS MLPSIAAPLYVEDLENLLHE
Sbjct: 62  FRSFSIFFHGSNSVMLPSIAAPLYVEDLENLLHE 95

[Close]

BLAST of Cp4.1LG08g04200 vs. NCBI nr
Match: KAG6597442.1 (hypothetical protein SDJN03_10622, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 161 bits (408), Expect = 9.49e-47
Identity = 81/87 (93.10%), Postives = 83/87 (95.40%), Query Frame = 0


Query: 79  AGSISSLEMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFSWFSQSKRCYIKIT 138
           AGSISSLEMAISSVFSRWDGLQMAID+KWGGGDSHQK LNLASDVFSWFSQSKRCYIKIT
Sbjct: 2   AGSISSLEMAISSVFSRWDGLQMAIDHKWGGGDSHQKPLNLASDVFSWFSQSKRCYIKIT 61

Query: 139 FRSFSIFFHGSNSAMLPSIAAPLYVED 165
           FRSFSIFFHGSNS MLPSIAAPL V +
Sbjct: 62  FRSFSIFFHGSNSVMLPSIAAPLDVHE 88

[Close]

BLAST of Cp4.1LG08g04200 vs. NCBI nr
Match: XP_022973690.1 (LOW QUALITY PROTEIN: pre-rRNA-processing protein TSR2 [Cucurbita maxima])

HSP 1 Score: 125 bits (313), Expect = 2.69e-33
Identity = 76/152 (50.00%), Postives = 81/152 (53.29%), Query Frame = 0


Query: 23  EPNNGLTSINHEAGSISSLEMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDAGSI 82
           EPNNGLTS NH+AGSISSL+MAISSVFSRWDGLQMAIDNKW                   
Sbjct: 2   EPNNGLTSTNHKAGSISSLQMAISSVFSRWDGLQMAIDNKW------------------- 61

Query: 83  SSLEMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFSWFSQSKRCYIKITFRSF 142
                                    GGGDSHQKSLNLASDVF+WFSQSKR          
Sbjct: 62  -------------------------GGGDSHQKSLNLASDVFTWFSQSKR---------- 83

Query: 143 SIFFHGSNSAMLPSIAAPLYVEDLENLLHEHL 174
                           +PLYV+DLENLLHEHL
Sbjct: 122 ----------------SPLYVDDLENLLHEHL 83

[Close]

BLAST of Cp4.1LG08g04200 vs. NCBI nr
Match: XP_008438674.1 (PREDICTED: pre-rRNA-processing protein TSR2 homolog isoform X2 [Cucumis melo] >KAA0049359.1 pre-rRNA-processing protein TSR2-like protein isoform X2 [Cucumis melo var. makuwa] >TYK17199.1 pre-rRNA-processing protein TSR2-like protein isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 108 bits (270), Expect = 8.12e-27
Identity = 60/96 (62.50%), Postives = 64/96 (66.67%), Query Frame = 0


Query: 79  AGSISSLEMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFSWFSQSKRCYIKIT 138
           AGS+SSL+MAISSVFSRWDGLQMAI+N+WGG DSHQKSLNL SDVFSWFS SK       
Sbjct: 14  AGSVSSLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSYSK------- 73

Query: 139 FRSFSIFFHGSNSAMLPSIAAPLYVEDLENLLHEHL 174
                                PLYVEDLENLLHE L
Sbjct: 74  --------------------PPLYVEDLENLLHETL 82

[Close]

BLAST of Cp4.1LG08g04200 vs. ExPASy TrEMBL
Match: A0A6J1GCB9 (uncharacterized protein LOC111452853 OS=Cucurbita moschata OX=3662 GN=LOC111452853 PE=3 SV=1)

HSP 1 Score: 194 bits (492), Expect = 2.74e-60
Identity = 106/152 (69.74%), Postives = 107/152 (70.39%), Query Frame = 0


Query: 23  EPNNGLTSINHEAGSISSLEMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDAGSI 82
           EPNNGLTSINH+AGSISSLEMAISSVFSRWDGLQMAIDNKW                   
Sbjct: 2   EPNNGLTSINHKAGSISSLEMAISSVFSRWDGLQMAIDNKW------------------- 61

Query: 83  SSLEMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFSWFSQSKRCYIKITFRSF 142
                                    GGGDSHQKSLNLASDVFSWFSQSKRCYIKITFRSF
Sbjct: 62  -------------------------GGGDSHQKSLNLASDVFSWFSQSKRCYIKITFRSF 109

Query: 143 SIFFHGSNSAMLPSIAAPLYVEDLENLLHEHL 174
           SIFFHGSNSAMLPSIAAPLYVEDLENL HEHL
Sbjct: 122 SIFFHGSNSAMLPSIAAPLYVEDLENLRHEHL 109

[Close]

BLAST of Cp4.1LG08g04200 vs. ExPASy TrEMBL
Match: A0A6J1IC01 (LOW QUALITY PROTEIN: pre-rRNA-processing protein TSR2 OS=Cucurbita maxima OX=3661 GN=LOC111472276 PE=3 SV=1)

HSP 1 Score: 125 bits (313), Expect = 1.30e-33
Identity = 76/152 (50.00%), Postives = 81/152 (53.29%), Query Frame = 0


Query: 23  EPNNGLTSINHEAGSISSLEMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDAGSI 82
           EPNNGLTS NH+AGSISSL+MAISSVFSRWDGLQMAIDNKW                   
Sbjct: 2   EPNNGLTSTNHKAGSISSLQMAISSVFSRWDGLQMAIDNKW------------------- 61

Query: 83  SSLEMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFSWFSQSKRCYIKITFRSF 142
                                    GGGDSHQKSLNLASDVF+WFSQSKR          
Sbjct: 62  -------------------------GGGDSHQKSLNLASDVFTWFSQSKR---------- 83

Query: 143 SIFFHGSNSAMLPSIAAPLYVEDLENLLHEHL 174
                           +PLYV+DLENLLHEHL
Sbjct: 122 ----------------SPLYVDDLENLLHEHL 83

[Close]

BLAST of Cp4.1LG08g04200 vs. ExPASy TrEMBL
Match: A0A5D3D3A3 (Pre-rRNA-processing protein TSR2-like protein isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00450 PE=3 SV=1)

HSP 1 Score: 108 bits (270), Expect = 3.93e-27
Identity = 60/96 (62.50%), Postives = 64/96 (66.67%), Query Frame = 0


Query: 79  AGSISSLEMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFSWFSQSKRCYIKIT 138
           AGS+SSL+MAISSVFSRWDGLQMAI+N+WGG DSHQKSLNL SDVFSWFS SK       
Sbjct: 14  AGSVSSLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSYSK------- 73

Query: 139 FRSFSIFFHGSNSAMLPSIAAPLYVEDLENLLHEHL 174
                                PLYVEDLENLLHE L
Sbjct: 74  --------------------PPLYVEDLENLLHETL 82

[Close]

BLAST of Cp4.1LG08g04200 vs. ExPASy TrEMBL
Match: A0A1S3AWZ6 (pre-rRNA-processing protein TSR2 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483709 PE=3 SV=1)

HSP 1 Score: 108 bits (270), Expect = 3.93e-27
Identity = 60/96 (62.50%), Postives = 64/96 (66.67%), Query Frame = 0


Query: 79  AGSISSLEMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFSWFSQSKRCYIKIT 138
           AGS+SSL+MAISSVFSRWDGLQMAI+N+WGG DSHQKSLNL SDVFSWFS SK       
Sbjct: 14  AGSVSSLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSYSK------- 73

Query: 139 FRSFSIFFHGSNSAMLPSIAAPLYVEDLENLLHEHL 174
                                PLYVEDLENLLHE L
Sbjct: 74  --------------------PPLYVEDLENLLHETL 82

[Close]

BLAST of Cp4.1LG08g04200 vs. ExPASy TrEMBL
Match: A0A1S3AX32 (pre-rRNA-processing protein TSR2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483709 PE=3 SV=1)

HSP 1 Score: 108 bits (270), Expect = 4.04e-27
Identity = 60/96 (62.50%), Postives = 64/96 (66.67%), Query Frame = 0


Query: 79  AGSISSLEMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFSWFSQSKRCYIKIT 138
           AGS+SSL+MAISSVFSRWDGLQMAI+N+WGG DSHQKSLNL SDVFSWFS SK       
Sbjct: 14  AGSVSSLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFSWFSYSK------- 73

Query: 139 FRSFSIFFHGSNSAMLPSIAAPLYVEDLENLLHEHL 174
                                PLYVEDLENLLHE L
Sbjct: 74  --------------------PPLYVEDLENLLHETL 82

[Close]

BLAST of Cp4.1LG08g04200 vs. TAIR 10
Match: AT3G22510.1 (Pre-rRNA-processing protein TSR2, conserved region )

HSP 1 Score: 53.1 bits (126), Expect = 2.7e-07
Identity = 34/92 (36.96%), Postives = 44/92 (47.83%), Query Frame = 0


Query: 83  SSLEMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFSWFSQSKRCYIKITFRSF 142
           S L+  I  + SRW GLQMA+ N+WGG DS +KS  LA ++F   SQS            
Sbjct: 29  SVLQRDIGELLSRWGGLQMAVKNQWGGHDSLKKSQELAHNLFHLISQSN----------- 88

Query: 143 SIFFHGSNSAMLPSIAAPLYVEDLENLLHEHL 175
                             + VE++ENLLHE L
Sbjct: 89  -----------------VITVEEIENLLHESL 92

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g04200 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG08g04200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949537.1	5.67e-60	69.74	uncharacterized protein LOC111452853 [Cucurbita moschata]	[more]
KAG7028903.1	1.35e-55	96.81	hypothetical protein SDJN02_10085, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6597442.1	9.49e-47	93.10	hypothetical protein SDJN03_10622, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022973690.1	2.69e-33	50.00	LOW QUALITY PROTEIN: pre-rRNA-processing protein TSR2 [Cucurbita maxima]	[more]
XP_008438674.1	8.12e-27	62.50	PREDICTED: pre-rRNA-processing protein TSR2 homolog isoform X2 [Cucumis melo] >K...	[more]

BLAST of Cp4.1LG08g04200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GCB9	2.74e-60	69.74	uncharacterized protein LOC111452853 OS=Cucurbita moschata OX=3662 GN=LOC1114528...	[more]
A0A6J1IC01	1.30e-33	50.00	LOW QUALITY PROTEIN: pre-rRNA-processing protein TSR2 OS=Cucurbita maxima OX=366...	[more]
A0A5D3D3A3	3.93e-27	62.50	Pre-rRNA-processing protein TSR2-like protein isoform X2 OS=Cucumis melo var. ma...	[more]
A0A1S3AWZ6	3.93e-27	62.50	pre-rRNA-processing protein TSR2 homolog isoform X2 OS=Cucumis melo OX=3656 GN=L...	[more]
A0A1S3AX32	4.04e-27	62.50	pre-rRNA-processing protein TSR2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483...	[more]

BLAST of Cp4.1LG08g04200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G22510.1	2.7e-07	36.96	Pre-rRNA-processing protein TSR2, conserved region	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019398	Pre-rRNA-processing protein TSR2	PFAM	PF10273	WGG	coord: 86..176 e-value: 4.4E-12 score: 46.4 coord: 42..77 e-value: 1.2E-6 score: 28.9
IPR019398	Pre-rRNA-processing protein TSR2	PANTHER	PTHR21250	UNCHARACTERIZED	coord: 28..78
IPR019398	Pre-rRNA-processing protein TSR2	PANTHER	PTHR21250	UNCHARACTERIZED	coord: 81..135
None	No IPR available	PANTHER	PTHR21250:SF4	PRE-RRNA-PROCESSING PROTEIN TSR2, MOTIF PROTEIN	coord: 81..135
None	No IPR available	PANTHER	PTHR21250:SF4	PRE-RRNA-PROCESSING PROTEIN TSR2, MOTIF PROTEIN	coord: 28..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g04200.1	Cp4.1LG08g04200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing