Cp4.1LG08g03900 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG08g03900
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptionprotein argonaute 10-like
LocationCp4.1LG08: 1875661 .. 1877514 (-)
RNA-Seq ExpressionCp4.1LG08g03900
SyntenyCp4.1LG08g03900
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTTATACCTGACATGACAAAGATGACGAGCAACAAATACTTAAGCTCAATTAGCATCAAGCCCGGTTGACATACACTCTTTTTCTACCAAGTTATACTCGATCCACCCAAATGCCTCACTGGGTGATGGGCCATAGGCTCTAAATTCTATTTGTAACATCTTTTTACTTCCCTTTACTGTCAAATTTCTATCAATTCAATCCATTCCTTTCAAATTGAATTTAAATCTTGATTTTGATTCATTATGTTCTTTGTACTCTCACATCGCTCCCTTTTGATTTAAAACTTTAGATTCACTTTTATATTCAAAATAGATTCTTAAGTGAATCATACTTCATTATGGTAAACCCCAAATATTGGGTATTTAGTTTAGTCACTACGTGGCAAAATTATGGGCCTAGTGGACACAAATGATTGCGTGTCCCTGCCTTGCAGAATGCAGTCAATAGTCAACTATAGTAATCATCTCATCTTGTAACAACATCCAATCACAACCGTCCAAATTCTAATGAGTGCTCTTTGAATCAGCACTTGGAAAACTCATAACTTAATATGGTACACGTGGCGTCTGGGTCCCATTTTTTTACCCCTCTACAAGTCGTGGATGTCATCATACACAACCACTACTCCTTCCTTCCGTGGGCGTTCCATTCGTCCACATCAGCCAGAGATGTGATTTCCTCCTCCACGTCCCATTTTCCTAATTTTGCTTTCTAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCTCGTTTCTTTTTGTTTCTTAGCTGAGTTATAGAGCTATTCTGCAGTGACCCTTTTCTGGTTTGGGGTTTTGGAGCTCTGAAATTGTACTGCTTGTAGATTGCATTGGTTTTTAGGGTGAGTTCTTTTCTTTTTGAATTCTGGGTTTGCTTCTTCTTAGTGGTTATTCAATGGGGCCGCCACTTTTGCAGCATTGAATCTTTGGGTATCAGCTGGATAGTGATTTTGCTACCCTTTTCTATATTTATTCTTGATTTGGGTATCAATGAATCTTTGGGTATCAGCTGGGTGTTCCTGCATAGTTTATTTTTCTGGGTTTTCTGTGTTGTCTTCCTTAATGGAAGATTTCGTCCTTGTTTTCGATGATGGACTCCCAAACAAGATCTGGGTTTCTAAAATTTTTTTTTACTGATTGTGTATTCGATTGTTTGAATTTGCTGAAACAATGGCTGTAAAATTGGGTTTTGATTTAACATAGGAATAGTAATGTTTGAAAACGTTGAAGAAACTGCCAAAGTTTTGGACATGTTTTCAACTTTTCGTATGAAACAATGATTCATTTCTCTTTTGAAGGATTCTTCGTCGTATTTATGCTGACATGAAGTTTTCCTCTTCTGGGTTCTTTTTTTTTTTCCCTTCTCAATAGAATGACGTCTTGAATCCGTGAAGAAGATGGTAAAAAATGAGTTCAGAGTAAGCGTGATTATGAAGAGACATCATGTTCATCATTTCGTGAAGCTTTATCAAGTTCTTTAGCCATTGCCAGTCGATTTCTCAGCCCACCAGCAATGACAGAGAGCTCGGAGCAGCACCTTGTAATCAAACCCCACTTTCAGAACTCTGTTCAAAAAGCTCAAAAACCAATCCAAAATGGCAAAGGCCACCCGAATCTCGAACACCAAAACANCCCATATGGTGCA

mRNA sequence

ACTTATACCTGACATGACAAAGATGACGAGCAACAAATACTTAAGCTCAATTAGCATCAAGCCCGCCATTGCCAGTCGATTTCTCAGCCCACCAGCAATGACAGAGAGCTCGGAGCAGCACCTTGTAATCAAACCCCACTTTCAGAACTCTGTTCAAAAAGCTCAAAAACCAATCCAAAATGGCAAAGGCCACCCGAATCTCGAACACCAAAACANCCCATATGGTGCA

Coding sequence (CDS)

ATGACAAAGATGACGAGCAACAAATACTTAAGCTCAATTAGCATCAAGCCCGCCATTGCCAGTCGATTTCTCAGCCCACCAGCAATGACAGAGAGCTCGGAGCAGCACCTTGTAATCAAACCCCACTTTCAGAACTCTGTTCAAAAAGCTCAAAAACCAATCCAAAATGGCAAAGGCCACCCGAATCTCGAACACCAAAACANCCCATATGGTGCA

Protein sequence

MTKMTSNKYLSSISIKPAIASRFLSPPAMTESSEQHLVIKPHFQNSVQKAQKPIQNGKGHPNLEHQNXPYGA
Homology
[Close]
BLAST of Cp4.1LG08g03900 vs. NCBI nr
Match: KAG6597411.1 (Protein argonaute 10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 82.4 bits (202), Expect = 3.18e-16
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 0 

Query: 29 MTESSEQHLVIKPHFQNSVQKAQKPIQNGKGHPNLEHQN 67
          MTESSEQHLV+KPHFQNSVQKAQKPIQNGKGHPNLEHQN
Sbjct: 1  MTESSEQHLVVKPHFQNSVQKAQKPIQNGKGHPNLEHQN 39

[Close]
BLAST of Cp4.1LG08g03900 vs. NCBI nr
Match: KAG7028869.1 (Protein argonaute 10, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 80.1 bits (196), Expect = 2.07e-15
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 0 

Query: 29 MTESSEQHLVIKPHFQNSVQKAQKPIQNGKGHPNLEHQN 67
          MTESSEQHLV+ PHFQNSVQKAQKPIQNGKGHPNLEHQN
Sbjct: 1  MTESSEQHLVVTPHFQNSVQKAQKPIQNGKGHPNLEHQN 39

[Close]
BLAST of Cp4.1LG08g03900 vs. NCBI nr
Match: XP_022947595.1 (protein argonaute 10-like [Cucurbita moschata] >XP_022947603.1 protein argonaute 10-like [Cucurbita moschata])

HSP 1 Score: 78.6 bits (192), Expect = 7.19e-15
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 29 MTESSEQHLVIKPHFQNSVQKAQKPIQNGKGHPNLEHQ 66
          MTESSEQH VIKPHFQNSVQKAQKPIQNGKGHPNLEHQ
Sbjct: 1  MTESSEQHRVIKPHFQNSVQKAQKPIQNGKGHPNLEHQ 38

[Close]
BLAST of Cp4.1LG08g03900 vs. NCBI nr
Match: XP_022975433.1 (protein argonaute 10-like [Cucurbita maxima])

HSP 1 Score: 76.6 bits (187), Expect = 3.42e-14
Identity = 37/39 (94.87%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 29 MTESSEQHLVIKPHFQNSVQKAQKPIQNGKGHPNLEHQN 67
          MTESSEQ LVIKPHFQNSVQKAQKPIQNGKG PNLEHQN
Sbjct: 1  MTESSEQQLVIKPHFQNSVQKAQKPIQNGKGQPNLEHQN 39

[Close]
BLAST of Cp4.1LG08g03900 vs. NCBI nr
Match: XP_022974445.1 (protein argonaute 10-like [Cucurbita maxima])

HSP 1 Score: 76.6 bits (187), Expect = 3.42e-14
Identity = 37/39 (94.87%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 29 MTESSEQHLVIKPHFQNSVQKAQKPIQNGKGHPNLEHQN 67
          MTESSEQ LVIKPHFQNSVQKAQKPIQNGKG PNLEHQN
Sbjct: 1  MTESSEQQLVIKPHFQNSVQKAQKPIQNGKGQPNLEHQN 39

[Close]
BLAST of Cp4.1LG08g03900 vs. ExPASy TrEMBL
Match: A0A6J1G729 (protein argonaute 10-like OS=Cucurbita moschata OX=3662 GN=LOC111451413 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.48e-15
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 29 MTESSEQHLVIKPHFQNSVQKAQKPIQNGKGHPNLEHQ 66
          MTESSEQH VIKPHFQNSVQKAQKPIQNGKGHPNLEHQ
Sbjct: 1  MTESSEQHRVIKPHFQNSVQKAQKPIQNGKGHPNLEHQ 38

[Close]
BLAST of Cp4.1LG08g03900 vs. ExPASy TrEMBL
Match: A0A6J1IJ66 (protein argonaute 10-like OS=Cucurbita maxima OX=3661 GN=LOC111474751 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.66e-14
Identity = 37/39 (94.87%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 29 MTESSEQHLVIKPHFQNSVQKAQKPIQNGKGHPNLEHQN 67
          MTESSEQ LVIKPHFQNSVQKAQKPIQNGKG PNLEHQN
Sbjct: 1  MTESSEQQLVIKPHFQNSVQKAQKPIQNGKGQPNLEHQN 39

[Close]
BLAST of Cp4.1LG08g03900 vs. ExPASy TrEMBL
Match: A0A6J1IDZ4 (protein argonaute 10-like OS=Cucurbita maxima OX=3661 GN=LOC111473106 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.66e-14
Identity = 37/39 (94.87%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 29 MTESSEQHLVIKPHFQNSVQKAQKPIQNGKGHPNLEHQN 67
          MTESSEQ LVIKPHFQNSVQKAQKPIQNGKG PNLEHQN
Sbjct: 1  MTESSEQQLVIKPHFQNSVQKAQKPIQNGKGQPNLEHQN 39

[Close]
BLAST of Cp4.1LG08g03900 vs. ExPASy TrEMBL
Match: A0A6J1GX34 (protein argonaute 10-like OS=Cucurbita moschata OX=3662 GN=LOC111457947 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.61e-10
Identity = 32/39 (82.05%), Postives = 32/39 (82.05%), Query Frame = 0 

Query: 29 MTESSEQHLVIKPHFQNSVQKAQKPIQNGKGHPNLEHQN 67
          M ESSEQHLVIK H QNSVQK QK  QNGKG PNLEHQN
Sbjct: 6  MKESSEQHLVIKTHLQNSVQKPQKATQNGKGPPNLEHQN 44

[Close]
BLAST of Cp4.1LG08g03900 vs. ExPASy TrEMBL
Match: A0A1S3AWX3 (protein argonaute 10 OS=Cucumis melo OX=3656 GN=LOC103483666 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.26e-09
Identity = 31/39 (79.49%), Postives = 32/39 (82.05%), Query Frame = 0 

Query: 29 MTESSEQHLVIKPHFQNSVQKAQKPIQNGKGHPNLEHQN 67
          M ESSEQHLVIK H QN+VQKA K  QNGKG PNLEHQN
Sbjct: 6  MKESSEQHLVIKTHLQNTVQKAPKSTQNGKGPPNLEHQN 44

The following BLAST results are available for this feature:
BLAST of Cp4.1LG08g03900 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG08g03900 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6597411.13.18e-1697.44Protein argonaute 10, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG7028869.12.07e-1594.87Protein argonaute 10, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022947595.17.19e-1597.37protein argonaute 10-like [Cucurbita moschata] >XP_022947603.1 protein argonaute... [more]
XP_022975433.13.42e-1494.87protein argonaute 10-like [Cucurbita maxima][more]
XP_022974445.13.42e-1494.87protein argonaute 10-like [Cucurbita maxima][more]
BLAST of Cp4.1LG08g03900 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1G7293.48e-1597.37protein argonaute 10-like OS=Cucurbita moschata OX=3662 GN=LOC111451413 PE=3 SV=... [more]
A0A6J1IJ661.66e-1494.87protein argonaute 10-like OS=Cucurbita maxima OX=3661 GN=LOC111474751 PE=3 SV=1[more]
A0A6J1IDZ41.66e-1494.87protein argonaute 10-like OS=Cucurbita maxima OX=3661 GN=LOC111473106 PE=3 SV=1[more]
A0A6J1GX343.61e-1082.05protein argonaute 10-like OS=Cucurbita moschata OX=3662 GN=LOC111457947 PE=3 SV=... [more]
A0A1S3AWX31.26e-0979.49protein argonaute 10 OS=Cucumis melo OX=3656 GN=LOC103483666 PE=3 SV=1[more]
BLAST of Cp4.1LG08g03900 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..71
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..55

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g03900.1Cp4.1LG08g03900.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051607 defense response to virus
biological_process GO:0031047 gene silencing by RNA
biological_process GO:0006955 immune response
molecular_function GO:0003676 nucleic acid binding