Cp4.1LG07g10050 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG07g10050
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG07: 9163218 .. 9163642 (+)
RNA-Seq ExpressionCp4.1LG07g10050
SyntenyCp4.1LG07g10050
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACACACACCGTCTTCTCAATTAACAATCTCACAGAAGCACAAGCTTTCAAAGCTAAGAGTCATGGCATCCCGAAAGCTTTTCACCGTTTTCGCTATTGTCATGATGATGTTCTATTTTGCTTCATCGGGTAAGTGTTTTTATCTTGCCATCTTTTAAATTCTATATTATTTTTTTGTTTTCTTTTGCTAAAATAATATTTAATCCTTCGATTGCTTGCAGCCAAAGGCGACATGTTCATGGAATGTATTCGTCCGTGTGTTGATGCTTTTGACGACGATTCGTGTTATGATGATTGCGTTCGTGCAAATAAAGGTGCTGGGTTTTGTTATCCTAAACTACCTTCTGTTACGAATGAAAAGGATTGTTGTTGTAATAATTGAGAGGACGGAATCGTTTGATTTTATTTAATTTTGTGGGCAAATTG

mRNA sequence

ACACACACCGTCTTCTCAATTAACAATCTCACAGAAGCACAAGCTTTCAAAGCTAAGAGTCATGGCATCCCGAAAGCTTTTCACCGTTTTCGCTATTGTCATGATGATGTTCTATTTTGCTTCATCGGCCAAAGGCGACATGTTCATGGAATGTATTCGTCCGTGTGTTGATGCTTTTGACGACGATTCGTGTTATGATGATTGCGTTCGTGCAAATAAAGGTGCTGGGTTTTGTTATCCTAAACTACCTTCTGTTACGAATGAAAAGGATTGTTGTTGTAATAATTGAGAGGACGGAATCGTTTGATTTTATTTAATTTTGTGGGCAAATTG

Coding sequence (CDS)

ATGGCATCCCGAAAGCTTTTCACCGTTTTCGCTATTGTCATGATGATGTTCTATTTTGCTTCATCGGCCAAAGGCGACATGTTCATGGAATGTATTCGTCCGTGTGTTGATGCTTTTGACGACGATTCGTGTTATGATGATTGCGTTCGTGCAAATAAAGGTGCTGGGTTTTGTTATCCTAAACTACCTTCTGTTACGAATGAAAAGGATTGTTGTTGTAATAATTGA

Protein sequence

MASRKLFTVFAIVMMMFYFASSAKGDMFMECIRPCVDAFDDDSCYDDCVRANKGAGFCYPKLPSVTNEKDCCCNN
Homology
BLAST of Cp4.1LG07g10050 vs. NCBI nr
Match: KAG6586428.1 (hypothetical protein SDJN03_19161, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 162 bits (409), Expect = 3.03e-50
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0

Query: 1  MASRKLFTVFAIVMMMFYFASSAKGDMFMECIRPCVDAFDDDSCYDDCVRANKGAGFCYP 60
          MASRKLFTVFAIVMMMFYFASSAKGDMFMECIRPCVDAFDDDSCYDDCVRANKGAGFCYP
Sbjct: 1  MASRKLFTVFAIVMMMFYFASSAKGDMFMECIRPCVDAFDDDSCYDDCVRANKGAGFCYP 60

Query: 61 KLPSVTNEKDCCCNN 75
          KLPSVTNEKDCCCNN
Sbjct: 61 KLPSVTNEKDCCCNN 75

BLAST of Cp4.1LG07g10050 vs. NCBI nr
Match: KGN61228.1 (hypothetical protein Csa_006463 [Cucumis sativus])

HSP 1 Score: 93.2 bits (230), Expect = 6.21e-23
Identity = 43/76 (56.58%), Postives = 59/76 (77.63%), Query Frame = 0

Query: 1  MASRKLFTVFAIVMMMFY-FASSAKGDMF-MECIRPCVDAFDDDSCYDDCVRANKGAGFC 60
          MA++KL T+  +V+M+F   AS+ KGD+  + C+RPC D +DD+SCY+DC++ N GAGFC
Sbjct: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60

Query: 61 YPKLPSVTNEKDCCCN 74
          YPKLPS   +KDCCCN
Sbjct: 61 YPKLPST--DKDCCCN 74

BLAST of Cp4.1LG07g10050 vs. NCBI nr
Match: KAE8651697.1 (hypothetical protein Csa_006343 [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 7.25e-22
Identity = 45/77 (58.44%), Postives = 58/77 (75.32%), Query Frame = 0

Query: 1  MASRKLFTVFAIVMMMFY--FASSAKGDMF-MECIRPCVDAFDDDSCYDDCVRANKGAGF 60
          MA++KL TV +IVM+M      S+ KGD+  + C+RPC D +DD+SCY+DC+R N GAGF
Sbjct: 1  MATQKLATV-SIVMLMILACIVSTTKGDVLNVNCVRPCSDTYDDESCYNDCIRENLGAGF 60

Query: 61 CYPKLPSVTNEKDCCCN 74
          CYPKLPS   +KDCCCN
Sbjct: 61 CYPKLPST--DKDCCCN 74

BLAST of Cp4.1LG07g10050 vs. NCBI nr
Match: KAE8651701.1 (hypothetical protein Csa_006400, partial [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 1.22e-18
Identity = 33/53 (62.26%), Postives = 43/53 (81.13%), Query Frame = 0

Query: 23 AKGDMF-MECIRPCVDAFDDDSCYDDCVRANKGAGFCYPKLPSVTNEKDCCCN 74
          AKGD+  M C++PC D +DD+SCY+DC++ N GAGFCYPKLPS   +KDCCC+
Sbjct: 14 AKGDVLNMHCVQPCSDTYDDESCYNDCIKENLGAGFCYPKLPST--DKDCCCS 64

BLAST of Cp4.1LG07g10050 vs. NCBI nr
Match: KGN54497.1 (hypothetical protein Csa_012842 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 2.64e-13
Identity = 34/76 (44.74%), Postives = 47/76 (61.84%), Query Frame = 0

Query: 1  MASRKLFTVFAIVMMMFY-FASSAKGDMFMECIRPCVDAFDDDSCYDDCVRANKGAGFCY 60
          M ++KLF V  +V + F  FASS +GD    C+ PC +   D  C   C+  ++GAGFC 
Sbjct: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV 60

Query: 61 PKLPSVTNEKDCCCNN 75
          PKLP +++ K CCCNN
Sbjct: 61 PKLPGISDMKVCCCNN 76

BLAST of Cp4.1LG07g10050 vs. ExPASy TrEMBL
Match: A0A0A0LHG9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.01e-23
Identity = 43/76 (56.58%), Postives = 59/76 (77.63%), Query Frame = 0

Query: 1  MASRKLFTVFAIVMMMFY-FASSAKGDMF-MECIRPCVDAFDDDSCYDDCVRANKGAGFC 60
          MA++KL T+  +V+M+F   AS+ KGD+  + C+RPC D +DD+SCY+DC++ N GAGFC
Sbjct: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60

Query: 61 YPKLPSVTNEKDCCCN 74
          YPKLPS   +KDCCCN
Sbjct: 61 YPKLPST--DKDCCCN 74

BLAST of Cp4.1LG07g10050 vs. ExPASy TrEMBL
Match: A0A0A0LJG5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 6.07e-23
Identity = 42/77 (54.55%), Postives = 59/77 (76.62%), Query Frame = 0

Query: 1  MASRKLFTVFAIVMMMF-YFASSAKGDMF-MECIRPCVDAFDDDSCYDDCVRANKGAGFC 60
          MA++KL T+  +V+++F    S+ KGD+  + C+RPC D +DD+SCY+DC+R N GAGFC
Sbjct: 1  MATQKLATISIVVLVIFPCIVSTTKGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFC 60

Query: 61 YPKLPSVTNEKDCCCNN 75
          YPKLPS   +KDCCCN+
Sbjct: 61 YPKLPST--DKDCCCND 75

BLAST of Cp4.1LG07g10050 vs. ExPASy TrEMBL
Match: A0A0A0LKF5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070930 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.96e-20
Identity = 35/54 (64.81%), Postives = 44/54 (81.48%), Query Frame = 0

Query: 22 SAKGDMF-MECIRPCVDAFDDDSCYDDCVRANKGAGFCYPKLPSVTNEKDCCCN 74
          +AKGD+  + C+RPC D +DD+SCY+DC+R N GAGFCYPKLPS   +KDCCCN
Sbjct: 2  TAKGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLPST--DKDCCCN 53

BLAST of Cp4.1LG07g10050 vs. ExPASy TrEMBL
Match: A0A0A0L1R8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G339000 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.28e-13
Identity = 34/76 (44.74%), Postives = 47/76 (61.84%), Query Frame = 0

Query: 1  MASRKLFTVFAIVMMMFY-FASSAKGDMFMECIRPCVDAFDDDSCYDDCVRANKGAGFCY 60
          M ++KLF V  +V + F  FASS +GD    C+ PC +   D  C   C+  ++GAGFC 
Sbjct: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV 60

Query: 61 PKLPSVTNEKDCCCNN 75
          PKLP +++ K CCCNN
Sbjct: 61 PKLPGISDMKVCCCNN 76

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6586428.13.03e-50100.00hypothetical protein SDJN03_19161, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN61228.16.21e-2356.58hypothetical protein Csa_006463 [Cucumis sativus][more]
KAE8651697.17.25e-2258.44hypothetical protein Csa_006343 [Cucumis sativus][more]
KAE8651701.11.22e-1862.26hypothetical protein Csa_006400, partial [Cucumis sativus][more]
KGN54497.12.64e-1344.74hypothetical protein Csa_012842 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A0A0LHG93.01e-2356.58Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1[more]
A0A0A0LJG56.07e-2354.55Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1[more]
A0A0A0LKF51.96e-2064.81Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070930 PE=4 SV=1[more]
A0A0A0L1R81.28e-1344.74Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G339000 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG07g10050.1Cp4.1LG07g10050.1mRNA