Cp4.1LG07g09790 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG07g09790
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	histone H1-like
Location	Cp4.1LG07: 8731281 .. 8732833 (+)
RNA-Seq Expression	Cp4.1LG07g09790
Synteny	Cp4.1LG07g09790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACCCTAGATCTAACGGTCCAAATTCAAACTTCTACAAGGACTATGATCCGCGTCAAAGCCTCTCGACCAATCAGAATTCAGCAGTGTGACTCCATTGCATTATATAAATCTTCCCTCAACGATATTCAACCTCATTGAATTTTCTCTCTCTTCTGCAAACGTTTCGAGTTCGAGATTCTAATCGATTCCGATCATGGCTTCTGCCGCCGATCCCGTTGTCTCCTCCGTCGCGCCTGCTGCCGCTGTGGCGGTGGAGAACAATTCGAAGTCGAAGAAACCTGCAGCCTCTAAAGATTTGTCGAAGGCTAAGAAATCATCTGGTGCGAAGAAGACCAAATCTTCGCCGACTCATCCTCCTTTCTTTCAGGTATTTGCAATTTGTCTATATTCTGATCAGTAATGCTCGTTTGCTTTTGAATAATTTGTTCTGATCGGATTCTGAAATTGTTCTGTAGATGATTAGCGAAGCGATCGTATCGCTGAAGGAGAGGACAGGCTCGAGTCAGTACGCCATTACTAAGTTCAGCGAAGAGAAGCACAAGGTATTGCCATCGAATTTCAGGAAGCTCTTGCTTGTTCATTTGAAGAAGCTTGTCGCCGCTGATAAACTCGTTAAGGTCAAGAACTCGTACAAGCTTCCATCGGCGCGCTCTGTCCAGTCGAAATCTTCATCCGCGCCTGTCGTCGCTAAGAAAACAACGATCTCAAAGCTCAAGGCAGCCGCGAGTGTGAAGAAGGCGGCCGCTGTTGCTAAACCGAAGGCGAAAACTGCTGTGAAACCTAAGCCAAATGGCGTGGTGAAGCCGAAGACGATCGCAAAATCCAAGGTCGTCCAGAAGCCAAAGGCCGCCGCTGTGGCCAAGCCTAAGGCGGCGGAGAAGGTGAAGAAGGTCGCTCCAAAGCCGAAACCTAAATCAAAGCCTTCTAAAGTTGCCAAAACGTTGTCCCGAACATCGCCAGGAAAGAGAGTCGCACCAGCGACGAAGCCGAAGAAGGTAGCGGTGAAGAAGTCAAAGACAGTAAAGTCGCCGACGAGGAAATTGCTGGCCAGAAAAGTGAAGAAATGAATCGTTTAGGGTTTTGATCGATTTCTAGGGTTTGTTACTACTTACTACTCTCAGTTCGTCGCAATGTAAATTAGGGCGACGAGGTTGCAATCACACTAATTTTATTTCAATTCAACGGTTTATCAAATTAATCCTCCTTCTCTGTGTTCTTCAGAGAGTGATTTCCTCTTGATAAATTCATAGGGCTATCACAGATCCGAGTTTGAAGCTTCGAGTGCACAGCTTCAATGGCGGATTTCTCCATTGCTTTGTTTCTTTCGCATAACCACCAATTCGTGCCTTATCCGTGGGACGTCGTTTCGAAATCTGTATTTCGCACGTGCGTAAGCCACGCTGGCAAGAGCTACGGACTTGTGGGTTTTTTTTTTTTTTTTTTTTTAATTAAAAAAAATTAATGGACTTGGAAGGAATTTGAATTTAATTTTTTTTTTTTGGCAAAAAATAAAACGGAATATTTGTTGAAATCACGTTTCTTTGTTTCTAAA

mRNA sequence

AACCCTAGATCTAACGGTCCAAATTCAAACTTCTACAAGGACTATGATCCGCGTCAAAGCCTCTCGACCAATCAGAATTCAGCAGTGTGACTCCATTGCATTATATAAATCTTCCCTCAACGATATTCAACCTCATTGAATTTTCTCTCTCTTCTGCAAACGTTTCGAGTTCGAGATTCTAATCGATTCCGATCATGGCTTCTGCCGCCGATCCCGTTGTCTCCTCCGTCGCGCCTGCTGCCGCTGTGGCGGTGGAGAACAATTCGAAGTCGAAGAAACCTGCAGCCTCTAAAGATTTGTCGAAGGCTAAGAAATCATCTGGTGCGAAGAAGACCAAATCTTCGCCGACTCATCCTCCTTTCTTTCAGATGATTAGCGAAGCGATCGTATCGCTGAAGGAGAGGACAGGCTCGAGTCAGTACGCCATTACTAAGTTCAGCGAAGAGAAGCACAAGGTATTGCCATCGAATTTCAGGAAGCTCTTGCTTGTTCATTTGAAGAAGCTTGTCGCCGCTGATAAACTCGTTAAGGTCAAGAACTCGTACAAGCTTCCATCGGCGCGCTCTGTCCAGTCGAAATCTTCATCCGCGCCTGTCGTCGCTAAGAAAACAACGATCTCAAAGCTCAAGGCAGCCGCGAGTGTGAAGAAGGCGGCCGCTGTTGCTAAACCGAAGGCGAAAACTGCTGTGAAACCTAAGCCAAATGGCGTGGTGAAGCCGAAGACGATCGCAAAATCCAAGGTCGTCCAGAAGCCAAAGGCCGCCGCTGTGGCCAAGCCTAAGGCGGCGGAGAAGGTGAAGAAGGTCGCTCCAAAGCCGAAACCTAAATCAAAGCCTTCTAAAGTTGCCAAAACGTTGTCCCGAACATCGCCAGGAAAGAGAGTCGCACCAGCGACGAAGCCGAAGAAGGTAGCGGTGAAGAAGTCAAAGACAGTAAAGTCGCCGACGAGGAAATTGCTGGCCAGAAAAGTGAAGAAATGAATCGTTTAGGGTTTTGATCGATTTCTAGGGTTTGTTACTACTTACTACTCTCAGTTCGTCGCAATGTAAATTAGGGCGACGAGGTTGCAATCACACTAATTTTATTTCAATTCAACGGTTTATCAAATTAATCCTCCTTCTCTGTGTTCTTCAGAGAGTGATTTCCTCTTGATAAATTCATAGGGCTATCACAGATCCGAGTTTGAAGCTTCGAGTGCACAGCTTCAATGGCGGATTTCTCCATTGCTTTGTTTCTTTCGCATAACCACCAATTCGTGCCTTATCCGTGGGACGTCGTTTCGAAATCTGTATTTCGCACGTGCGTAAGCCACGCTGGCAAGAGCTACGGACTTGTGGGTTTTTTTTTTTTTTTTTTTTTAATTAAAAAAAATTAATGGACTTGGAAGGAATTTGAATTTAATTTTTTTTTTTTGGCAAAAAATAAAACGGAATATTTGTTGAAATCACGTTTCTTTGTTTCTAAA

Coding sequence (CDS)

ATGGCTTCTGCCGCCGATCCCGTTGTCTCCTCCGTCGCGCCTGCTGCCGCTGTGGCGGTGGAGAACAATTCGAAGTCGAAGAAACCTGCAGCCTCTAAAGATTTGTCGAAGGCTAAGAAATCATCTGGTGCGAAGAAGACCAAATCTTCGCCGACTCATCCTCCTTTCTTTCAGATGATTAGCGAAGCGATCGTATCGCTGAAGGAGAGGACAGGCTCGAGTCAGTACGCCATTACTAAGTTCAGCGAAGAGAAGCACAAGGTATTGCCATCGAATTTCAGGAAGCTCTTGCTTGTTCATTTGAAGAAGCTTGTCGCCGCTGATAAACTCGTTAAGGTCAAGAACTCGTACAAGCTTCCATCGGCGCGCTCTGTCCAGTCGAAATCTTCATCCGCGCCTGTCGTCGCTAAGAAAACAACGATCTCAAAGCTCAAGGCAGCCGCGAGTGTGAAGAAGGCGGCCGCTGTTGCTAAACCGAAGGCGAAAACTGCTGTGAAACCTAAGCCAAATGGCGTGGTGAAGCCGAAGACGATCGCAAAATCCAAGGTCGTCCAGAAGCCAAAGGCCGCCGCTGTGGCCAAGCCTAAGGCGGCGGAGAAGGTGAAGAAGGTCGCTCCAAAGCCGAAACCTAAATCAAAGCCTTCTAAAGTTGCCAAAACGTTGTCCCGAACATCGCCAGGAAAGAGAGTCGCACCAGCGACGAAGCCGAAGAAGGTAGCGGTGAAGAAGTCAAAGACAGTAAAGTCGCCGACGAGGAAATTGCTGGCCAGAAAAGTGAAGAAATGA

Protein sequence

MASAADPVVSSVAPAAAVAVENNSKSKKPAASKDLSKAKKSSGAKKTKSSPTHPPFFQMISEAIVSLKERTGSSQYAITKFSEEKHKVLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLPSARSVQSKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNGVVKPKTIAKSKVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPATKPKKVAVKKSKTVKSPTRKLLARKVKK

Homology

[Close]

BLAST of Cp4.1LG07g09790 vs. ExPASy Swiss-Prot
Match: P26569 (Histone H1.2 OS=Arabidopsis thaliana OX=3702 GN=At2g30620 PE=1 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 9.0e-38
Identity = 135/271 (49.82%), Postives = 166/271 (61.25%), Query Frame = 0


Query: 2   ASAADPVVSSVAPAAAVAVENNSKSKKPAASKDLSKAKKSSGAKKTKSSPTHPPFFQMIS 61
           + AAD  V S     A       KSKK   +K   K  K++   K K++ +HP + +MI 
Sbjct: 14  SGAADTTVKSPEKKPAA---KGGKSKKTTTAKATKKPVKAAAPTKKKTTSSHPTYEEMIK 73

Query: 62  EAIVSLKERTGSSQYAITKFSEEKHKVLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLPS 121
           +AIV+LKERTGSSQYAI KF EEKHK LP  FRKLLLV+LK+LVA++KLVKVK S+K+PS
Sbjct: 74  DAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKVKASFKIPS 133

Query: 122 ARSVQSKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNGVVKP--KTIA 181
           ARS  +   +APV  K T ++K K     K AAAVA  KAK A K    G  KP  K +A
Sbjct: 134 ARSAATPKPAAPVKKKATVVAKPKG----KVAAAVAPAKAKAAAK----GTKKPAAKVVA 193

Query: 182 KSKVVQKPKA-AAVAKPK-----AAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPA 241
           K+KV  KPKA    AKPK     A  K K VA KPK K +P+K ++T +RTSPGK+VA  
Sbjct: 194 KAKVTAKPKAKVTAAKPKSKSVAAVSKTKAVAAKPKAKERPAKASRTSTRTSPGKKVAAP 253

Query: 242 TKPKKVAVK---KSKTVKSPTRKLLARKVKK 262
            K   V  K   KS  VKSP ++   RK KK
Sbjct: 254 AKKVAVTKKAPAKSVKVKSPAKRASTRKAKK 273

[Close]

BLAST of Cp4.1LG07g09790 vs. ExPASy Swiss-Prot
Match: P37218 (Histone H1 OS=Solanum lycopersicum OX=4081 PE=3 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.2e-37
Identity = 142/279 (50.90%), Postives = 171/279 (61.29%), Query Frame = 0


Query: 8   VVSSVAPAAAVAVENNSKSKKPAASKDLSKAKKSSGAKKTKSSPTHPPFFQMISEAIVSL 67
           VV   A    V  E N  +K   A K+ +KAKK +  +K  ++PTHPP+F+MI +AIV+L
Sbjct: 12  VVEEQAAPETVKDEANPPAKSGKAKKE-TKAKKPAAPRKRSATPTHPPYFEMIKDAIVTL 71

Query: 68  KERTGSSQYAITKFSEEKHKVLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLPS-----A 127
           KERTGSSQ+AITKF EEK K LPSNF+KLLL  LKK VA++KLVKVKNSYKLPS     A
Sbjct: 72  KERTGSSQHAITKFIEEKQKSLPSNFKKLLLTQLKKFVASEKLVKVKNSYKLPSGSKPAA 131

Query: 128 RSVQSKSSSAPVVAKKTTISKLKAAASVK-------KAAAVAKP--KAKTAVKPKPNGVV 187
            +V +K    P  AK    +K KAA   K       K AA AKP  KAK A K KP    
Sbjct: 132 AAVPAKKK--PAAAKSKPAAKPKAAVKPKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKA 191

Query: 188 KPKTIAKSKVVQKPKAAAVAKPKAAEKVK------KVAPKP--KPKSKPSKVAKTLSRTS 247
           KP   AK     KPKAAA AKPKAA K K      K A KP  K K+  +KVAKT +RT+
Sbjct: 192 KPAAKAKPVAKAKPKAAAAAKPKAAVKPKAAPAKTKAAVKPNLKAKTTTAKVAKTATRTT 251

Query: 248 PGKRVAP-ATKPKKVAVKK--SKTVKSPTRKLLARKVKK 262
           P ++ AP AT  KK  VKK  +K VKSP +K   ++ +K
Sbjct: 252 PSRKAAPKATPAKKEPVKKAPAKNVKSPAKKATPKRGRK 287

[Close]

BLAST of Cp4.1LG07g09790 vs. ExPASy Swiss-Prot
Match: Q9M5W4 (Histone H1 OS=Euphorbia esula OX=3993 PE=2 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.3e-36
Identity = 131/252 (51.98%), Postives = 149/252 (59.13%), Query Frame = 0


Query: 4   AADPVVSSVAPAAAVAVENNSKSKKPAASKDLSKAKKSSGAKKTKSSPT--HPPFFQMIS 63
           A  PV + V P   V    + +  K AA K   + KK   AKK KS  T  HP FF+MIS
Sbjct: 2   ADTPVSAPVVP--EVTERKSKRGTKAAAVKVPKEKKKVIAAKKPKSKGTSSHPSFFEMIS 61

Query: 64  EAIVSLKERTGSSQYAITKFSEEKHKVLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLPS 123
           +AI +LKERTGSSQYAI KF E+KHK LPSNFRKLLL HLKKLVA+ KLVKVKNS+KLPS
Sbjct: 62  DAISTLKERTGSSQYAINKFVEDKHKQLPSNFRKLLLFHLKKLVASGKLVKVKNSFKLPS 121

Query: 124 ARSVQSKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNGVVKPKTIAKS 183
           AR     ++ AP +AKK TI K K AA  K A   AKPKAK  V  K       KT+AK 
Sbjct: 122 AR-----AAPAPALAKKPTIPKPKVAAKPKTAKIGAKPKAKAKVAAKTKATT--KTVAKK 181

Query: 184 KVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPATKPKKVAV 243
               KPKA    KPK               +KP+KVAKT +  SPGK+       K V V
Sbjct: 182 IPAAKPKAKTAGKPKTV------------AAKPAKVAKTAAVASPGKK-------KAVPV 225

Query: 244 KKSKTVKSPTRK 254
           KK KTVKSP  K
Sbjct: 242 KKVKTVKSPAGK 225

[Close]

BLAST of Cp4.1LG07g09790 vs. ExPASy Swiss-Prot
Match: P23444 (Histone H1 OS=Zea mays OX=4577 PE=2 SV=2)

HSP 1 Score: 137.1 bits (344), Expect = 2.8e-31
Identity = 129/264 (48.86%), Postives = 151/264 (57.20%), Query Frame = 0


Query: 5   ADPVVSSVAPAAAVAVENNSKS-KKPAASKDLSKAKKSSGAKKTKSSPTHPPFFQMISEA 64
           A  V  + AP    A E  + +   PAA  + +KAKK++  KK ++SPTH P+ +M+SEA
Sbjct: 2   ATDVTETPAPLVDAAPEAPADAPAAPAADANAAKAKKATAPKK-RASPTHLPYAEMVSEA 61

Query: 65  IVSLKERTGSSQYAITKFSEEKHKV-LPSNFRKLLLVHLKKLVAADKLVKVKNSYKLPSA 124
           I SLKERTGSS YAI KF E+KHK  LP NFRKLL V LKKLVA  KL KVKNSYKL SA
Sbjct: 62  ITSLKERTGSSSYAIAKFVEDKHKAKLPPNFRKLLNVQLKKLVAGGKLTKVKNSYKLSSA 121

Query: 125 RSVQSKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNGVVKPKTIAKSK 184
                K  +AP           K     KK  A AKPKAKT  K KP    KPK  AK K
Sbjct: 122 TKPNPKPKAAP----------KKPKTGAKKPKAAAKPKAKTPAKAKP--ATKPKPAAKPK 181

Query: 185 VVQKPKAAA--VAKPKAAEKVKKVAPKPKPKSKP---SKVAKTLSRTSPGKRVAPATKPK 244
            V KPK  A   AKP A  K K    KPKP +K    +K AKT ++ +PGK+ APA K  
Sbjct: 182 AVVKPKTPAKPKAKPAAKAKPKTAGAKPKPLAKKAGRAKAAKTSAKDTPGKK-APAKK-- 241

Query: 245 KVAVKKSKTVKSPTRKLLARKVKK 262
                 SK   +P RK  +RK KK
Sbjct: 242 ---AAPSKKAATPVRKAPSRKAKK 246

[Close]

BLAST of Cp4.1LG07g09790 vs. ExPASy Swiss-Prot
Match: P08283 (Histone H1 OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 9.1e-30
Identity = 123/265 (46.42%), Postives = 156/265 (58.87%), Query Frame = 0


Query: 6   DPVVSSVAPAAAVAVENNSKSKKPAASKDLSKAKKSSGAKKTKSSPTHPPFFQMISEAIV 65
           +P+V+         V    + K        +K  K   A K ++  +HP + +MI +AIV
Sbjct: 15  EPIVTEPTTITEPEVPEKEEPKAEVEKTKKAKGSKPKKASKPRNPASHPTYEEMIKDAIV 74

Query: 66  SLKERTGSSQYAITKFSEEKHKVLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLPSARSV 125
           SLKE+ GSSQYAI KF EEK K LP+NF+KLLL +LKK VA+ KL+KVK S+KL +A   
Sbjct: 75  SLKEKNGSSQYAIAKFIEEKQKQLPANFKKLLLQNLKKNVASGKLIKVKGSFKLSAA--- 134

Query: 126 QSKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNGVVKPKTIAKSK-VV 185
                     AKK  ++K KA    K AA     KAK A KPK   VVKPK  +K+K V 
Sbjct: 135 ----------AKKPAVAKPKA----KTAAKAKSVKAKPAAKPKAKAVVKPKVASKAKAVA 194

Query: 186 QKPKAAAVAKPK-AAEKVKKVAPKP----KPKS--KPSKVAKTLSRTSPGKRVAPATK-- 245
            KPK AA AKPK  A K K  A KP    KPKS  KP+KVAKT  +T+PGK+VA   K  
Sbjct: 195 AKPKKAA-AKPKTVAAKTKPTAAKPKAVVKPKSKVKPAKVAKTSVKTTPGKKVAAVKKVA 254

Query: 246 PKKVAVK--KSKTVKSPTRKLLARK 259
            KKV VK  K+K+VKSP +K+  ++
Sbjct: 255 AKKVPVKSVKAKSVKSPVKKVSVKR 261

[Close]

BLAST of Cp4.1LG07g09790 vs. NCBI nr
Match: XP_023538032.1 (histone H1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 434 bits (1115), Expect = 7.44e-152
Identity = 261/261 (100.00%), Postives = 261/261 (100.00%), Query Frame = 0


Query: 1   MASAADPVVSSVAPAAAVAVENNSKSKKPAASKDLSKAKKSSGAKKTKSSPTHPPFFQMI 60
           MASAADPVVSSVAPAAAVAVENNSKSKKPAASKDLSKAKKSSGAKKTKSSPTHPPFFQMI
Sbjct: 1   MASAADPVVSSVAPAAAVAVENNSKSKKPAASKDLSKAKKSSGAKKTKSSPTHPPFFQMI 60

Query: 61  SEAIVSLKERTGSSQYAITKFSEEKHKVLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLP 120
           SEAIVSLKERTGSSQYAITKFSEEKHKVLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLP
Sbjct: 61  SEAIVSLKERTGSSQYAITKFSEEKHKVLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLP 120

Query: 121 SARSVQSKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNGVVKPKTIAK 180
           SARSVQSKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNGVVKPKTIAK
Sbjct: 121 SARSVQSKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNGVVKPKTIAK 180

Query: 181 SKVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPATKPKKVA 240
           SKVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPATKPKKVA
Sbjct: 181 SKVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPATKPKKVA 240

Query: 241 VKKSKTVKSPTRKLLARKVKK 261
           VKKSKTVKSPTRKLLARKVKK
Sbjct: 241 VKKSKTVKSPTRKLLARKVKK 261

[Close]

BLAST of Cp4.1LG07g09790 vs. NCBI nr
Match: XP_022938185.1 (histone H1-like [Cucurbita moschata])

HSP 1 Score: 417 bits (1071), Expect = 3.62e-145
Identity = 255/261 (97.70%), Postives = 256/261 (98.08%), Query Frame = 0


Query: 1   MASAADPVVSSVAPAAAVAVENNSKSKKPAASKDLSKAKKSSGAKKTKSSPTHPPFFQMI 60
           MASAADPVVSSVAPAAAVAVENNSKSKK AASKD SKAKKSSGAKKTKSSPTHPPFFQMI
Sbjct: 1   MASAADPVVSSVAPAAAVAVENNSKSKKTAASKD-SKAKKSSGAKKTKSSPTHPPFFQMI 60

Query: 61  SEAIVSLKERTGSSQYAITKFSEEKHKVLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLP 120
           SEAIVSLKERTGSSQYAITKFSEEKHKVLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLP
Sbjct: 61  SEAIVSLKERTGSSQYAITKFSEEKHKVLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLP 120

Query: 121 SARSVQSKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNGVVKPKTIAK 180
           SARSVQ KSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPN VVKPKT+AK
Sbjct: 121 SARSVQQKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNAVVKPKTVAK 180

Query: 181 SKVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPATKPKKVA 240
           SKVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSK SKVAKTLSRTSPGKRVAPATKPKKVA
Sbjct: 181 SKVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKASKVAKTLSRTSPGKRVAPATKPKKVA 240

Query: 241 VKKSKTVKSPTRKLLARKVKK 261
           VKKSKTVKSPTRKLLARKVKK
Sbjct: 241 VKKSKTVKSPTRKLLARKVKK 260

[Close]

BLAST of Cp4.1LG07g09790 vs. NCBI nr
Match: KAG7021165.1 (Histone H1.2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 409 bits (1052), Expect = 2.83e-142
Identity = 252/261 (96.55%), Postives = 252/261 (96.55%), Query Frame = 0


Query: 1   MASAADPVVSSVAPAAAVAVENNSKSKKPAASKDLSKAKKSSGAKKTKSSPTHPPFFQMI 60
           MASAADPVVSSVAPAAAV VENNSKSKK AASKD SKAKKSSGAKKTKSSPTHPPFFQMI
Sbjct: 1   MASAADPVVSSVAPAAAVVVENNSKSKKTAASKD-SKAKKSSGAKKTKSSPTHPPFFQMI 60

Query: 61  SEAIVSLKERTGSSQYAITKFSEEKHKVLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLP 120
           SEAIVSLKERTGSSQYAITKFSEEKHKVLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLP
Sbjct: 61  SEAIVSLKERTGSSQYAITKFSEEKHKVLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLP 120

Query: 121 SARSVQSKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNGVVKPKTIAK 180
           SARSVQ KSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPN VVKPKTIAK
Sbjct: 121 SARSVQQKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNVVVKPKTIAK 180

Query: 181 SKVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPATKPKKVA 240
           SKVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKPSKVAKT SRTSPGKRVAPA K KKVA
Sbjct: 181 SKVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKPSKVAKTFSRTSPGKRVAPAAKSKKVA 240

Query: 241 VKKSKTVKSPTRKLLARKVKK 261
            KKSKTVKSPTRKLLARKVKK
Sbjct: 241 AKKSKTVKSPTRKLLARKVKK 260

[Close]

BLAST of Cp4.1LG07g09790 vs. NCBI nr
Match: XP_022965890.1 (histone H1-like [Cucurbita maxima])

HSP 1 Score: 408 bits (1049), Expect = 8.10e-142
Identity = 249/261 (95.40%), Postives = 254/261 (97.32%), Query Frame = 0


Query: 1   MASAADPVVSSVAPAAAVAVENNSKSKKPAASKDLSKAKKSSGAKKTKSSPTHPPFFQMI 60
           MASAADPVV S APAAAVAVENN+KSKK  ASKD SKAKK SGAKKTKSSPTHPPFF+MI
Sbjct: 1   MASAADPVVPSDAPAAAVAVENNAKSKKTKASKD-SKAKKLSGAKKTKSSPTHPPFFRMI 60

Query: 61  SEAIVSLKERTGSSQYAITKFSEEKHKVLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLP 120
           SEAIVSLKERTGSSQYAITKFSEEKHK+LPSNFRKLLLVHLKKLV+ADKLVKVKNSYKLP
Sbjct: 61  SEAIVSLKERTGSSQYAITKFSEEKHKLLPSNFRKLLLVHLKKLVSADKLVKVKNSYKLP 120

Query: 121 SARSVQSKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNGVVKPKTIAK 180
           SARSVQ KSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNGVVKPKT+AK
Sbjct: 121 SARSVQQKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNGVVKPKTVAK 180

Query: 181 SKVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPATKPKKVA 240
           SKVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPATKPKKVA
Sbjct: 181 SKVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPATKPKKVA 240

Query: 241 VKKSKTVKSPTRKLLARKVKK 261
           VKKSKTVKSPTRKLLARKVKK
Sbjct: 241 VKKSKTVKSPTRKLLARKVKK 260

[Close]

BLAST of Cp4.1LG07g09790 vs. NCBI nr
Match: KAG6586317.1 (hypothetical protein SDJN03_19050, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 353 bits (905), Expect = 2.79e-120
Identity = 228/261 (87.36%), Postives = 228/261 (87.36%), Query Frame = 0


Query: 1   MASAADPVVSSVAPAAAVAVENNSKSKKPAASKDLSKAKKSSGAKKTKSSPTHPPFFQMI 60
           MASAADPVVSSVAPAAAV VENNSKSKK AASKD SKAKKSSGAKKTKSSPTHPPFFQMI
Sbjct: 1   MASAADPVVSSVAPAAAVVVENNSKSKKTAASKD-SKAKKSSGAKKTKSSPTHPPFFQMI 60

Query: 61  SEAIVSLKERTGSSQYAITKFSEEKHKVLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLP 120
           SEAIVSLKERTGSSQYAITKFSEEKHKV                         KNSYKLP
Sbjct: 61  SEAIVSLKERTGSSQYAITKFSEEKHKV-------------------------KNSYKLP 120

Query: 121 SARSVQSKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNGVVKPKTIAK 180
           SARSVQ KSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPN VVKPKTIAK
Sbjct: 121 SARSVQQKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNVVVKPKTIAK 180

Query: 181 SKVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPATKPKKVA 240
           SKVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPA K KKVA
Sbjct: 181 SKVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPAAKSKKVA 235

Query: 241 VKKSKTVKSPTRKLLARKVKK 261
            KKSKTVKSPTRKLLARKVKK
Sbjct: 241 AKKSKTVKSPTRKLLARKVKK 235

[Close]

BLAST of Cp4.1LG07g09790 vs. ExPASy TrEMBL
Match: A0A6J1FIZ7 (histone H1-like OS=Cucurbita moschata OX=3662 GN=LOC111444347 PE=3 SV=1)

HSP 1 Score: 417 bits (1071), Expect = 1.75e-145
Identity = 255/261 (97.70%), Postives = 256/261 (98.08%), Query Frame = 0


Query: 1   MASAADPVVSSVAPAAAVAVENNSKSKKPAASKDLSKAKKSSGAKKTKSSPTHPPFFQMI 60
           MASAADPVVSSVAPAAAVAVENNSKSKK AASKD SKAKKSSGAKKTKSSPTHPPFFQMI
Sbjct: 1   MASAADPVVSSVAPAAAVAVENNSKSKKTAASKD-SKAKKSSGAKKTKSSPTHPPFFQMI 60

Query: 61  SEAIVSLKERTGSSQYAITKFSEEKHKVLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLP 120
           SEAIVSLKERTGSSQYAITKFSEEKHKVLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLP
Sbjct: 61  SEAIVSLKERTGSSQYAITKFSEEKHKVLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLP 120

Query: 121 SARSVQSKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNGVVKPKTIAK 180
           SARSVQ KSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPN VVKPKT+AK
Sbjct: 121 SARSVQQKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNAVVKPKTVAK 180

Query: 181 SKVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPATKPKKVA 240
           SKVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSK SKVAKTLSRTSPGKRVAPATKPKKVA
Sbjct: 181 SKVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKASKVAKTLSRTSPGKRVAPATKPKKVA 240

Query: 241 VKKSKTVKSPTRKLLARKVKK 261
           VKKSKTVKSPTRKLLARKVKK
Sbjct: 241 VKKSKTVKSPTRKLLARKVKK 260

[Close]

BLAST of Cp4.1LG07g09790 vs. ExPASy TrEMBL
Match: A0A6J1HQ08 (histone H1-like OS=Cucurbita maxima OX=3661 GN=LOC111465639 PE=3 SV=1)

HSP 1 Score: 408 bits (1049), Expect = 3.92e-142
Identity = 249/261 (95.40%), Postives = 254/261 (97.32%), Query Frame = 0


Query: 1   MASAADPVVSSVAPAAAVAVENNSKSKKPAASKDLSKAKKSSGAKKTKSSPTHPPFFQMI 60
           MASAADPVV S APAAAVAVENN+KSKK  ASKD SKAKK SGAKKTKSSPTHPPFF+MI
Sbjct: 1   MASAADPVVPSDAPAAAVAVENNAKSKKTKASKD-SKAKKLSGAKKTKSSPTHPPFFRMI 60

Query: 61  SEAIVSLKERTGSSQYAITKFSEEKHKVLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLP 120
           SEAIVSLKERTGSSQYAITKFSEEKHK+LPSNFRKLLLVHLKKLV+ADKLVKVKNSYKLP
Sbjct: 61  SEAIVSLKERTGSSQYAITKFSEEKHKLLPSNFRKLLLVHLKKLVSADKLVKVKNSYKLP 120

Query: 121 SARSVQSKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNGVVKPKTIAK 180
           SARSVQ KSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNGVVKPKT+AK
Sbjct: 121 SARSVQQKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNGVVKPKTVAK 180

Query: 181 SKVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPATKPKKVA 240
           SKVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPATKPKKVA
Sbjct: 181 SKVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPATKPKKVA 240

Query: 241 VKKSKTVKSPTRKLLARKVKK 261
           VKKSKTVKSPTRKLLARKVKK
Sbjct: 241 VKKSKTVKSPTRKLLARKVKK 260

[Close]

BLAST of Cp4.1LG07g09790 vs. ExPASy TrEMBL
Match: A0A6J1G2W2 (histone H1-like OS=Cucurbita moschata OX=3662 GN=LOC111450301 PE=3 SV=1)

HSP 1 Score: 329 bits (843), Expect = 8.71e-111
Identity = 217/265 (81.89%), Postives = 230/265 (86.79%), Query Frame = 0


Query: 1   MASAADPVVSSVAPA--AAVA--VENNSKSKKPAASKDLSKAKKSSGAKKTKSSPTHPPF 60
           M+SAADPV SS APA  AAVA  VEN+SKSKK AASK  SKAKK SGAK+T+SSPTHPPF
Sbjct: 1   MSSAADPVASSDAPATVAAVAQPVENDSKSKKAAASK-ASKAKKPSGAKRTRSSPTHPPF 60

Query: 61  FQMISEAIVSLKERTGSSQYAITKFSEEKHKVLPSNFRKLLLVHLKKLVAADKLVKVKNS 120
           F+MISEAIVSLKERTGSSQYAITKFSEEKHK LPSNFRKLLLVHLKKLVAADKLVKVKNS
Sbjct: 61  FEMISEAIVSLKERTGSSQYAITKFSEEKHKKLPSNFRKLLLVHLKKLVAADKLVKVKNS 120

Query: 121 YKLPSARSVQSKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNGVVKPK 180
           YKLPSARS   K+++APVVAKK   SKLKAA SVKKAA VAKPKAKTAVKPKP  V KPK
Sbjct: 121 YKLPSARS---KAAAAPVVAKKPASSKLKAAVSVKKAA-VAKPKAKTAVKPKPKAVAKPK 180

Query: 181 TIAKSKVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPATKP 240
           + AKSKVV KPKA A AK KAAEKVKKVAPKPKP +KP+KVAKTLSRTSPGK+ APA K 
Sbjct: 181 SAAKSKVVAKPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSRTSPGKKAAPAAKA 240

Query: 241 KKVAVKKSKTVKSPTRKLLARKVKK 261
           KKVA KK KTVKSP RK+ ARKVKK
Sbjct: 241 KKVAAKKPKTVKSPARKVQARKVKK 260

[Close]

BLAST of Cp4.1LG07g09790 vs. ExPASy TrEMBL
Match: A0A6J1KEC3 (histone H1-like OS=Cucurbita maxima OX=3661 GN=LOC111493576 PE=3 SV=1)

HSP 1 Score: 323 bits (829), Expect = 1.17e-108
Identity = 215/265 (81.13%), Postives = 227/265 (85.66%), Query Frame = 0


Query: 1   MASAADPVVSSVAPA--AAVA--VENNSKSKKPAASKDLSKAKKSSGAKKTKSSPTHPPF 60
           M+SAADPV SS APA  A VA  VEN+SKSKK AASK  SKAKK SGAK+T+SSPTHPPF
Sbjct: 1   MSSAADPVASSDAPATVAVVAPPVENDSKSKKAAASK-ASKAKKPSGAKRTRSSPTHPPF 60

Query: 61  FQMISEAIVSLKERTGSSQYAITKFSEEKHKVLPSNFRKLLLVHLKKLVAADKLVKVKNS 120
           F+MISEAIVSLKERTGSSQYAITKFSEEKHK LPSNFRKLLLVHLKKLVAADKLVKVKNS
Sbjct: 61  FEMISEAIVSLKERTGSSQYAITKFSEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNS 120

Query: 121 YKLPSARSVQSKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNGVVKPK 180
           YKLPSARS   K+++APVVAKK   SKLKAA SVKKAA VAKPKAKTAVKPKP  V KPK
Sbjct: 121 YKLPSARS---KAAAAPVVAKKPASSKLKAAVSVKKAA-VAKPKAKTAVKPKPKVVAKPK 180

Query: 181 TIAKSKVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPATKP 240
             AKSKVV KPKA A AK KAAEKVKKVAPKPKP +KP+KVAKTLSR SPGK+ APA K 
Sbjct: 181 AAAKSKVVGKPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSRASPGKKAAPAAKA 240

Query: 241 KKVAVKKSKTVKSPTRKLLARKVKK 261
           KKVA KK KTVKSP RK+ ARKVKK
Sbjct: 241 KKVAAKKPKTVKSPARKVQARKVKK 260

[Close]

BLAST of Cp4.1LG07g09790 vs. ExPASy TrEMBL
Match: A0A6J1CNP7 (histone H1-like OS=Momordica charantia OX=3673 GN=LOC111012938 PE=3 SV=1)

HSP 1 Score: 316 bits (809), Expect = 1.42e-105
Identity = 209/266 (78.57%), Postives = 225/266 (84.59%), Query Frame = 0


Query: 1   MASAADPVVSSVAPAAAVA----VENNSKSKKPAASKDLSKAKKSSGAKKTKSSPTHPPF 60
           MASAADP+V S APAA  A    V N++K KK A+SK  SKAKK SGAK+ KSSPTHPPF
Sbjct: 1   MASAADPIVPSDAPAADAAEVLTVANDAKPKKAASSK-ASKAKKPSGAKRPKSSPTHPPF 60

Query: 61  FQMISEAIVSLKERTGSSQYAITKFSEEKHKVLPSNFRKLLLVHLKKLVAADKLVKVKNS 120
           FQMISEAIVSLKERTGSSQYAITKFSEEKHK LPSNFRKLLLVHLKKLVAADKLVKVKNS
Sbjct: 61  FQMISEAIVSLKERTGSSQYAITKFSEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNS 120

Query: 121 YKLPSARSVQSKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNGVVKPK 180
           YKLPSARS+Q+K++ APV AKK   SKLKAAASVKK AAV KPKAKTAVKPKP  VVKPK
Sbjct: 121 YKLPSARSIQAKAA-APVAAKKPASSKLKAAASVKKKAAVVKPKAKTAVKPKPKAVVKPK 180

Query: 181 TIAKSKVVQKPKAAAVA-KPKAAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPATK 240
           TI+KSKVV KPKAAA A KPKAA KVK  A K KP ++P+KVAKTL++TSPGKR APA K
Sbjct: 181 TISKSKVVAKPKAAAAAAKPKAAAKVK-AAAKAKPAARPAKVAKTLTQTSPGKRAAPAAK 240

Query: 241 PKKVAVKKSKTVKSPTRKLLARKVKK 261
            KKVA KK KTVKSP RK+ ARKVKK
Sbjct: 241 AKKVAAKKPKTVKSPARKVQARKVKK 263

[Close]

BLAST of Cp4.1LG07g09790 vs. TAIR 10
Match: AT2G30620.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 158.7 bits (400), Expect = 6.4e-39
Identity = 135/271 (49.82%), Postives = 166/271 (61.25%), Query Frame = 0


Query: 2   ASAADPVVSSVAPAAAVAVENNSKSKKPAASKDLSKAKKSSGAKKTKSSPTHPPFFQMIS 61
           + AAD  V S     A       KSKK   +K   K  K++   K K++ +HP + +MI 
Sbjct: 14  SGAADTTVKSPEKKPAA---KGGKSKKTTTAKATKKPVKAAAPTKKKTTSSHPTYEEMIK 73

Query: 62  EAIVSLKERTGSSQYAITKFSEEKHKVLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLPS 121
           +AIV+LKERTGSSQYAI KF EEKHK LP  FRKLLLV+LK+LVA++KLVKVK S+K+PS
Sbjct: 74  DAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKVKASFKIPS 133

Query: 122 ARSVQSKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNGVVKP--KTIA 181
           ARS  +   +APV  K T ++K K     K AAAVA  KAK A K    G  KP  K +A
Sbjct: 134 ARSAATPKPAAPVKKKATVVAKPKG----KVAAAVAPAKAKAAAK----GTKKPAAKVVA 193

Query: 182 KSKVVQKPKA-AAVAKPK-----AAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPA 241
           K+KV  KPKA    AKPK     A  K K VA KPK K +P+K ++T +RTSPGK+VA  
Sbjct: 194 KAKVTAKPKAKVTAAKPKSKSVAAVSKTKAVAAKPKAKERPAKASRTSTRTSPGKKVAAP 253

Query: 242 TKPKKVAVK---KSKTVKSPTRKLLARKVKK 262
            K   V  K   KS  VKSP ++   RK KK
Sbjct: 254 AKKVAVTKKAPAKSVKVKSPAKRASTRKAKK 273

[Close]

BLAST of Cp4.1LG07g09790 vs. TAIR 10
Match: AT1G06760.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 130.6 bits (327), Expect = 1.9e-30
Identity = 124/262 (47.33%), Postives = 155/262 (59.16%), Query Frame = 0


Query: 13  APAAAVAVENN--SKSKKPAASKDLSKAKKSSGAKKTKSSPTHPPFFQMISEAIVSLKER 72
           AP    AVE    +K +K    K++ + K  + A K ++  +HP + +MI +AIV+LKER
Sbjct: 20  APVTDAAVEKKPAAKGRKTKNVKEVKEKKTVAAAPKKRTVSSHPTYEEMIKDAIVTLKER 79

Query: 73  TGSSQYAITKFSEEKHKVLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLPSARSVQSKSS 132
           TGSSQYAI KF EEK K LP  FRKLLL++LK+LVA+ KLVKVK S+KLPSA    +K+S
Sbjct: 80  TGSSQYAIQKFIEEKRKELPPTFRKLLLLNLKRLVASGKLVKVKASFKLPSA---SAKAS 139

Query: 133 SAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNGVVKPKTIAKSKVVQKPKAA 192
           S    A+K+  +K K A     A   AK K   A K K    VKPKT A  KV  K KA 
Sbjct: 140 SPKAAAEKSAPAKKKPAT---VAVTKAKRKVAAASKAKKTIAVKPKTAAAKKVTAKAKAK 199

Query: 193 AVAK-PKAAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPATK-------PKKVAVK 252
            V +   AA K K V  KPK K++P+K AKT   TSP K+   ATK        KK  VK
Sbjct: 200 PVPRATAAATKRKAVDAKPKAKARPAKAAKTAKVTSPAKKAVAATKKVATVATKKKTPVK 259

Query: 253 ---KSKTVKSPTRKLLARKVKK 262
              K KTVKSP ++  +R VKK
Sbjct: 260 KVVKPKTVKSPAKRASSR-VKK 274

[Close]

BLAST of Cp4.1LG07g09790 vs. TAIR 10
Match: AT2G30620.2 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 114.0 bits (284), Expect = 1.8e-25
Identity = 91/191 (47.64%), Postives = 118/191 (61.78%), Query Frame = 0


Query: 2   ASAADPVVSSVAPAAAVAVENNSKSKKPAASKDLSKAKKSSGAKKTKSSPTHPPFFQMIS 61
           + AAD  V S     A       KSKK   +K   K  K++   K K++ +HP + +MI 
Sbjct: 14  SGAADTTVKSPEKKPAA---KGGKSKKTTTAKATKKPVKAAAPTKKKTTSSHPTYEEMIK 73

Query: 62  EAIVSLKERTGSSQYAITKFSEEKHKVLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLPS 121
           +AIV+LKERTGSSQYAI KF EEKHK LP  FRKLLLV+LK+LVA++KLVKVK S+K+PS
Sbjct: 74  DAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKVKASFKIPS 133

Query: 122 ARSVQSKSSSAPVVAKKTTISKLKAAASVKKAA---AVAKPKAKTAV-KPKPNGVVKPKT 181
           ARS  +   +APV  K T ++K KA+ +  + +    VA P  K AV K  P   VK K+
Sbjct: 134 ARSAATPKPAAPVKKKATVVAKPKASRTSTRTSPGKKVAAPAKKVAVTKKAPAKSVKVKS 193

Query: 182 IAKSKVVQKPK 189
            AK    +K K
Sbjct: 194 PAKRASTRKAK 201

[Close]

BLAST of Cp4.1LG07g09790 vs. TAIR 10
Match: AT2G18050.1 (histone H1-3 )

HSP 1 Score: 72.0 bits (175), Expect = 7.9e-13
Identity = 67/164 (40.85%), Postives = 92/164 (56.10%), Query Frame = 0


Query: 39  KKSSGAKKTK--SSPTHPPFFQMISEAIVSLKERTGSSQYAITKFSEEKHK-VLPSNFRK 98
           KK+  AKK +   + THPP+FQMI EA++ LKE+ GSS YAI K  EEKHK +LP +FRK
Sbjct: 8   KKTPAAKKPRKPKTTTHPPYFQMIKEALMVLKEKNGSSPYAIAKKIEEKHKSLLPESFRK 67

Query: 99  LLLVHLKKLVAADKLVKVKNSYKLPSARSV----QSKSSSAPVVAKKTTISKLKAAASV- 158
            L + LK  VA  KLVK++ SYKL     +    Q K +   +  +   I+K   ++S  
Sbjct: 68  TLSLQLKNSVAKGKLVKIRASYKLSDTTKMITRQQDKKNKKNMKQEDKEITKRTRSSSTR 127

Query: 159 -KKAAAVAKPKAKTAVKPKPNGVVKPKTIAKSKVVQKPKAAAVA 194
            KK  +V K + K  VK       +PK+I  S   +K   A+ A
Sbjct: 128 PKKTVSVNKQEKKRKVKK----ARQPKSIKSSVGKKKAMKASAA 167

[Close]

BLAST of Cp4.1LG07g09790 vs. TAIR 10
Match: AT2G18050.2 (histone H1-3 )

HSP 1 Score: 55.5 bits (132), Expect = 7.7e-08
Identity = 56/142 (39.44%), Postives = 77/142 (54.23%), Query Frame = 0


Query: 59  MISEAIVSLKERTGSSQYAITKFSEEKHK-VLPSNFRKLLLVHLKKLVAADKLVKVKNSY 118
           MI EA++ LKE+ GSS YAI K  EEKHK +LP +FRK L + LK  VA  KLVK++ SY
Sbjct: 1   MIKEALMVLKEKNGSSPYAIAKKIEEKHKSLLPESFRKTLSLQLKNSVAKGKLVKIRASY 60

Query: 119 KLPSARSV----QSKSSSAPVVAKKTTISKLKAAASV--KKAAAVAKPKAKTAVKPKPNG 178
           KL     +    Q K +   +  +   I+K   ++S   KK  +V K + K  VK     
Sbjct: 61  KLSDTTKMITRQQDKKNKKNMKQEDKEITKRTRSSSTRPKKTVSVNKQEKKRKVKK---- 120

Query: 179 VVKPKTIAKSKVVQKPKAAAVA 194
             +PK+I  S   +K   A+ A
Sbjct: 121 ARQPKSIKSSVGKKKAMKASAA 138

The following BLAST results are available for this feature:

BLAST of Cp4.1LG07g09790 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P26569	9.0e-38	49.82	Histone H1.2 OS=Arabidopsis thaliana OX=3702 GN=At2g30620 PE=1 SV=1	[more]
P37218	1.2e-37	50.90	Histone H1 OS=Solanum lycopersicum OX=4081 PE=3 SV=1	[more]
Q9M5W4	1.3e-36	51.98	Histone H1 OS=Euphorbia esula OX=3993 PE=2 SV=1	[more]
P23444	2.8e-31	48.86	Histone H1 OS=Zea mays OX=4577 PE=2 SV=2	[more]
P08283	9.1e-30	46.42	Histone H1 OS=Pisum sativum OX=3888 PE=2 SV=1	[more]

BLAST of Cp4.1LG07g09790 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023538032.1	7.44e-152	100.00	histone H1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022938185.1	3.62e-145	97.70	histone H1-like [Cucurbita moschata]	[more]
KAG7021165.1	2.83e-142	96.55	Histone H1.2 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022965890.1	8.10e-142	95.40	histone H1-like [Cucurbita maxima]	[more]
KAG6586317.1	2.79e-120	87.36	hypothetical protein SDJN03_19050, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Cp4.1LG07g09790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FIZ7	1.75e-145	97.70	histone H1-like OS=Cucurbita moschata OX=3662 GN=LOC111444347 PE=3 SV=1	[more]
A0A6J1HQ08	3.92e-142	95.40	histone H1-like OS=Cucurbita maxima OX=3661 GN=LOC111465639 PE=3 SV=1	[more]
A0A6J1G2W2	8.71e-111	81.89	histone H1-like OS=Cucurbita moschata OX=3662 GN=LOC111450301 PE=3 SV=1	[more]
A0A6J1KEC3	1.17e-108	81.13	histone H1-like OS=Cucurbita maxima OX=3661 GN=LOC111493576 PE=3 SV=1	[more]
A0A6J1CNP7	1.42e-105	78.57	histone H1-like OS=Momordica charantia OX=3673 GN=LOC111012938 PE=3 SV=1	[more]

BLAST of Cp4.1LG07g09790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30620.1	6.4e-39	49.82	winged-helix DNA-binding transcription factor family protein	[more]
AT1G06760.1	1.9e-30	47.33	winged-helix DNA-binding transcription factor family protein	[more]
AT2G30620.2	1.8e-25	47.64	winged-helix DNA-binding transcription factor family protein	[more]
AT2G18050.1	7.9e-13	40.85	histone H1-3	[more]
AT2G18050.2	7.7e-08	39.44	histone H1-3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005819	Linker histone H1/H5	PRINTS	PR00624	HISTONEH5	coord: 39..60 score: 35.86 coord: 66..83 score: 38.89 coord: 176..193 score: 29.63 coord: 198..217 score: 31.67 coord: 145..159 score: 44.44
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 50..116 e-value: 4.4E-31 score: 119.3
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 53..119 e-value: 8.8E-16 score: 58.0
IPR005818	Linker histone H1/H5, domain H15	PROSITE	PS51504	H15	coord: 52..121 score: 28.368652
IPR005818	Linker histone H1/H5, domain H15	CDD	cd00073	H15	coord: 50..128 e-value: 1.36907E-12 score: 59.9423
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 47..133 e-value: 4.4E-20 score: 73.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 235..261
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 184..261
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..56
None	No IPR available	PANTHER	PTHR11467:SF128	SUBFAMILY NOT NAMED	coord: 6..261
None	No IPR available	PANTHER	PTHR11467	HISTONE H1	coord: 6..261
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 49..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG07g09790.1	Cp4.1LG07g09790.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008168	methyltransferase activity