Cp4.1LG07g06720 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG07g06720
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	double-stranded RNA-binding protein 2-like
Location	Cp4.1LG07: 5421929 .. 5425919 (-)
RNA-Seq Expression	Cp4.1LG07g06720
Synteny	Cp4.1LG07g06720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGGAAGAAAATTTTCCCTTTCTCTCTCACAAACCAGCCTCGGGGTTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTGAAAGTGAGAAAAAAAAAAAAAAAAAAAACCCCTAAAAAGCTTTTGATCTCGCCGGATTTTCGTCTCTGTCAACAACGACGGTGAGAATCTTCTTCTTTAGTTTTGATTTTTCTGCTAGATTACGGCGGATCAGATCTTGGTTAGGGTTTTTGGTTTCTGTGAAAAGCCCTAACGGAGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGTTAATTTGTGAAGTGAGTGGAAGGAGGAGTGAGGCGGTGCTGAGACTGAATCGGAGCGGAAATGTACAAGAACCAGCTTCAAGAGCTGGCACAGAGGAGTTGCTTTAATCTTCCCTCGTATACCTGCATTAGGGAAGGACCAGACCATGCGCCGAGGTTTAAAGCTACTGTTAACTTCAATGGCGAGGTCTTTGAATGCCCTCAGTACTGCTCTACTCTCCGTCAGGCTGAGCACTCCGCGGCTGAGGTTGCCTTGAACGCTCTCTCTAACCGTGGTCCTCCTCATTCACTTGCGGCTAGGATACTGGTGAGTCTTGTTTGGTTTTCGTTTTTGTTCTTCGGCTTGCTTCTCTTCTCTGCTTGATCTTCATTTCTTTGTTGTGTTTTCATGCGACGAATCAATGTTACTGTTTGCGGTAGGATTATTCGGTTCGTGGAAATTAGTTAGTAGTTTTAGGTTTTTGTTTTGTTAGTATTGGTTGAGCATTTTGTTCTTGTTCTCTTCTTAAGATTCCTGATATCATTTCCGGTTTCTGCGGCTAAGAAGCGTAGATTATAGAGAAATTGCACAATCTGTGCGTCTTGTTAGCAATGGCACCTTTGCACCTCAGCTAGAGTTCTTAGTCTGCGAGCATCTCGGTCGATGGGTTGATTAAGATCTTAGATATGGTTTTTCTGCTATCTGGGGTTAAAATGATGGCCGTGACATGGTTTAGGTTGGGGTTTTTCTTCTCAGTTACGAGATGGACTTGTAATCTCTCTGATCGGCCGGAATTCTCTGATTAGGCCTAAGGTTTAGGGTCATCTTCGAACGAAAAGTGTGACCTCGTGACGCTTCCTCGAGGTTCCGTTCCATGAGAGGAGGTATCTAGTTTTGTTTACCTTATTATCTCGGAACCAGCTGTCGGGAGTAGTCTTCTTGGGCAAGGTTGTGTAATTAATTTGCTCATTAATGGGTTTGTCGGTCGTCCAATTGTGTTTTCGGTAGCTCCCAACTTTGGCTCAGTTTATTTCTCCGATCTCATAAATGACCAGATGGGTATTGTAGCAACGGCAGGGACTAGGAATCCAGCACCAATTGTGATAAACTTGTCGGAGGCTGAATTTCAGATGAGATGATGATTCATGTTTAATCAATTAGAAATTTGGAGGACGTTGTCATTATCTACGTTCATAAAAAGTTCATAGGCTTTATAACTTCGGTTTTAAATGTAATTATTTCTCCCCGAGTTTCAGTAGAAATTGTTTGACTAAACTTTTCTTTGCTGTTTTTTGCCATTAGAGCGAATATCATGGTGTTTAAAGAGGGGGATGAGAAATTTTCGATCGATTTCTGGGTTACTTTTCCTTGAACATTGTTATGTATGAGATGAATCTTCTGATATGAGGATGTGATCTCTTTTGTATCGTTTCATTTAATTGATGGAATTGTTTGCATATGGAGCTTTAGGTTCTATGTATGGCCTTAGTGATTTCAGTTAAATGAGAATATTTTGCGATAGTAGCTTAAAATGGAAAATATTTTGTCCTTCGAGCTGCCTTCCCCGATTTTTGGTTTAATTATTTACAATAATCATCTATGATCAGGATGAAACAGGGGTTTACAAGAACCTCCTGCAGGAAATTGCGCAAAGAGTTGGAGCCCCATTGCCACAATATACAACGTTCAGATCAGGCCTTGGTCACCTACCTGTTTTTACAGGGATAGTAGAATTGGCTGGAATAACATTTACTGGAGAACCGGCCAAGAACAAAAAACAGGCAGAGAAGAATGCTGCAATGGCAGCTTGGTCAGCTTTAAAACAATGTGAGTTTTTTTTTTAATGCCTACCTTGTATAACTATTATCCAGTGAAAAGAGAGAATAGACCATCTTATTTTGTGCATATTTTGTGCAAGTTAATGGTATGCAAACCCGTATATGATATTATTATATGCTCGAACATGTAGACTAGCATTCAAACGATTCCTCTGCGACATGTTGATGCCAATGGTCTTTATTATATCGCCTAAATTTCCTATGGAAGCTAAATATCCTATGCTTGATGTGCTAATGGCATGCTTAACAATTAAATATTTTGCCTTCATCAGTTTTTCTTGTGCGAGTCTGAGAGAACACACCATGGAATTCCTTCTAATAGATAATATCAATTGCGAACACTCCTTGTTATGATTCAAAGTTGCCATAAGTTTATTCTAAGAATATTGCTTATCTTATCATGGTGCCTATTTATTATATATTCTGGTGTTGAGCTAACATTTTGTTTTAATTTTGGCTAGTGGCTAAGCAATCAGCAAGCTCGTCATCGGAACCAGAAAACAATGATGAGCTGGAGCAGATCACGATAGCTCGAGCCTTATTGAATTATCGCCAAAAAGAAAAAATGGCCATGTCGAATCCAAATGCAACAATACCATTCCCCAGAAGACTTCATATTCAAAGTCCAAGGCCAACTAGTCCCCAACGTCCCCCTGCACCAACATCAAAAATTCTTCCCTTAATTTGCCAAAAGGCAGCTCCTCGAAGCAGAGCGCCATTTTCTGCGAATAAAATCCTTATTCCACAATCCCCAACTTCTGCAGTAGAAGGCTCTGGAACCTGCCCCCAGAAGTTTAGTGCCGGAGCTGCTCTTTCTTATATTCCTGTTCAGCAGTTTAGGGCATCTTGCCGTGGTATTGCCCCACCAGTGACAATTAGAACAGCAATGCCTGTGTATTCAGCCCCGCCTCTACCGCAACCATCGAAGCTACCTCCACAGCAAGTAACTCGAGTCCCACCTGTACGTATTGCCCCACCCGTTTCTATTAGGCAAGCAATACCTGCTTTTGCTGCTCCCCCATTACGCAAGGAAAGTCCTCCTGTAGTTAAAAAAGAAGATTGTCCAGCTTCAACTGCTCCAAAGGAAGAGCCTCCTGCTCCCCCCGCACCTTCACAGCCTACTAAATCACCTGCTGAAGTAGAAGAACAAGCTACAACCACAATGTCAAACAGTCAGCAAGAAATTAAGACGTTAGAGAACCTCGAACAACTCCAAATTTGATGAGTTGAATCATTAGAAAGACCACATAGGAGATCGTCGTATTGTTTTGCAGTAAAGTTAGGTTATCTCATCTCGTCCGCATCTTATTTTGAGTGTCAACCTTTTTTCTTTTCATCTTTTTTGCCCTGTTTTGTTCAAACTTGAGTTTAGAGGTGGAAAAGTTGGTATCAGCATCCCTGCAGCAGCAATGCCATTCATCAGCAACTGTGTCAACTTATGTACTTATATATTAGTATCTTTGGGCATGTTGTCCTATCTTCTCCAAGAATTCTGTTCTGATTTATGCATGCCATCTTTGCATCCCAAGATAGGCTGATGAGAGCCCTAGGATGCATGGATGTCGTTAAGGTTGTCACCAAGAGTCTCTAGTTAACCACCTCGCCCATCGCTCGGGACCCTCATTTCCATTTTTCTGCATTCCTCCATTTTCATGCATATATATATATTTGCTGATCTTGTCTGAACAGTGATTCTAAAGATGCTCATGTTGTGGCTTCCCCCTGAAGGGGCCTTTCAAGAGGCATGGAATATTTCAGTTGCTGAAATTCGGAGTCGAAATTCTTGTTCGGAATGGAATGAATGATATTTGTATTTCAGGTGGTGTATTGCAGTATTTTAAGGACATATCCTTCCATTAGTAGCATAATTTAGATCC

mRNA sequence

CAGGAAGAAAATTTTCCCTTTCTCTCTCACAAACCAGCCTCGGGGTTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTGAAAGTGAGAAAAAAAAAAAAAAAAAAAACCCCTAAAAAGCTTTTGATCTCGCCGGATTTTCGTCTCTGTCAACAACGACGGTGAGAATCTTCTTCTTTAGTTTTGATTTTTCTGCTAGATTACGGCGGATCAGATCTTGGTTAGGGTTTTTGGTTTCTGTGAAAAGCCCTAACGGAGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGTTAATTTGTGAAGTGAGTGGAAGGAGGAGTGAGGCGGTGCTGAGACTGAATCGGAGCGGAAATGTACAAGAACCAGCTTCAAGAGCTGGCACAGAGGAGTTGCTTTAATCTTCCCTCGTATACCTGCATTAGGGAAGGACCAGACCATGCGCCGAGGTTTAAAGCTACTGTTAACTTCAATGGCGAGGTCTTTGAATGCCCTCAGTACTGCTCTACTCTCCGTCAGGCTGAGCACTCCGCGGCTGAGGTTGCCTTGAACGCTCTCTCTAACCGTGGTCCTCCTCATTCACTTGCGGCTAGGATACTGGATGAAACAGGGGTTTACAAGAACCTCCTGCAGGAAATTGCGCAAAGAGTTGGAGCCCCATTGCCACAATATACAACGTTCAGATCAGGCCTTGGTCACCTACCTGTTTTTACAGGGATAGTAGAATTGGCTGGAATAACATTTACTGGAGAACCGGCCAAGAACAAAAAACAGGCAGAGAAGAATGCTGCAATGGCAGCTTGGTCAGCTTTAAAACAATTGGCTAAGCAATCAGCAAGCTCGTCATCGGAACCAGAAAACAATGATGAGCTGGAGCAGATCACGATAGCTCGAGCCTTATTGAATTATCGCCAAAAAGAAAAAATGGCCATGTCGAATCCAAATGCAACAATACCATTCCCCAGAAGACTTCATATTCAAAGTCCAAGGCCAACTAGTCCCCAACGTCCCCCTGCACCAACATCAAAAATTCTTCCCTTAATTTGCCAAAAGGCAGCTCCTCGAAGCAGAGCGCCATTTTCTGCGAATAAAATCCTTATTCCACAATCCCCAACTTCTGCAGTAGAAGGCTCTGGAACCTGCCCCCAGAAGTTTAGTGCCGGAGCTGCTCTTTCTTATATTCCTGTTCAGCAGTTTAGGGCATCTTGCCGTGGTATTGCCCCACCAGTGACAATTAGAACAGCAATGCCTGTGTATTCAGCCCCGCCTCTACCGCAACCATCGAAGCTACCTCCACAGCAAGTAACTCGAGTCCCACCTGTACGTATTGCCCCACCCGTTTCTATTAGGCAAGCAATACCTGCTTTTGCTGCTCCCCCATTACGCAAGGAAAGTCCTCCTGTAGTTAAAAAAGAAGATTGTCCAGCTTCAACTGCTCCAAAGGAAGAGCCTCCTGCTCCCCCCGCACCTTCACAGCCTACTAAATCACCTGCTGAAGTAGAAGAACAAGCTACAACCACAATGTCAAACAGTCAGCAAGAAATTAAGACGTTAGAGAACCTCGAACAACTCCAAATTTGATGAGTTGAATCATTAGAAAGACCACATAGGAGATCGTCGTATTGTTTTGCAGTAAAGTTAGGTTATCTCATCTCGTCCGCATCTTATTTTGAGTGTCAACCTTTTTTCTTTTCATCTTTTTTGCCCTGTTTTGTTCAAACTTGAGTTTAGAGGTGGAAAAGTTGGTATCAGCATCCCTGCAGCAGCAATGCCATTCATCAGCAACTGTGTCAACTTATGTACTTATATATTAGTATCTTTGGGCATGTTGTCCTATCTTCTCCAAGAATTCTGTTCTGATTTATGCATGCCATCTTTGCATCCCAAGATAGGCTGATGAGAGCCCTAGGATGCATGGATGTCGTTAAGGTTGTCACCAAGAGTCTCTAGTTAACCACCTCGCCCATCGCTCGGGACCCTCATTTCCATTTTTCTGCATTCCTCCATTTTCATGCATATATATATATTTGCTGATCTTGTCTGAACAGTGATTCTAAAGATGCTCATGTTGTGGCTTCCCCCTGAAGGGGCCTTTCAAGAGGCATGGAATATTTCAGTTGCTGAAATTCGGAGTCGAAATTCTTGTTCGGAATGGAATGAATGATATTTGTATTTCAGGTGGTGTATTGCAGTATTTTAAGGACATATCCTTCCATTAGTAGCATAATTTAGATCC

Coding sequence (CDS)

ATGTACAAGAACCAGCTTCAAGAGCTGGCACAGAGGAGTTGCTTTAATCTTCCCTCGTATACCTGCATTAGGGAAGGACCAGACCATGCGCCGAGGTTTAAAGCTACTGTTAACTTCAATGGCGAGGTCTTTGAATGCCCTCAGTACTGCTCTACTCTCCGTCAGGCTGAGCACTCCGCGGCTGAGGTTGCCTTGAACGCTCTCTCTAACCGTGGTCCTCCTCATTCACTTGCGGCTAGGATACTGGATGAAACAGGGGTTTACAAGAACCTCCTGCAGGAAATTGCGCAAAGAGTTGGAGCCCCATTGCCACAATATACAACGTTCAGATCAGGCCTTGGTCACCTACCTGTTTTTACAGGGATAGTAGAATTGGCTGGAATAACATTTACTGGAGAACCGGCCAAGAACAAAAAACAGGCAGAGAAGAATGCTGCAATGGCAGCTTGGTCAGCTTTAAAACAATTGGCTAAGCAATCAGCAAGCTCGTCATCGGAACCAGAAAACAATGATGAGCTGGAGCAGATCACGATAGCTCGAGCCTTATTGAATTATCGCCAAAAAGAAAAAATGGCCATGTCGAATCCAAATGCAACAATACCATTCCCCAGAAGACTTCATATTCAAAGTCCAAGGCCAACTAGTCCCCAACGTCCCCCTGCACCAACATCAAAAATTCTTCCCTTAATTTGCCAAAAGGCAGCTCCTCGAAGCAGAGCGCCATTTTCTGCGAATAAAATCCTTATTCCACAATCCCCAACTTCTGCAGTAGAAGGCTCTGGAACCTGCCCCCAGAAGTTTAGTGCCGGAGCTGCTCTTTCTTATATTCCTGTTCAGCAGTTTAGGGCATCTTGCCGTGGTATTGCCCCACCAGTGACAATTAGAACAGCAATGCCTGTGTATTCAGCCCCGCCTCTACCGCAACCATCGAAGCTACCTCCACAGCAAGTAACTCGAGTCCCACCTGTACGTATTGCCCCACCCGTTTCTATTAGGCAAGCAATACCTGCTTTTGCTGCTCCCCCATTACGCAAGGAAAGTCCTCCTGTAGTTAAAAAAGAAGATTGTCCAGCTTCAACTGCTCCAAAGGAAGAGCCTCCTGCTCCCCCCGCACCTTCACAGCCTACTAAATCACCTGCTGAAGTAGAAGAACAAGCTACAACCACAATGTCAAACAGTCAGCAAGAAATTAAGACGTTAGAGAACCTCGAACAACTCCAAATTTGA

Protein sequence

MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSAAEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFTGIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQITIARALLNYRQKEKMAMSNPNATIPFPRRLHIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRAPFSANKILIPQSPTSAVEGSGTCPQKFSAGAALSYIPVQQFRASCRGIAPPVTIRTAMPVYSAPPLPQPSKLPPQQVTRVPPVRIAPPVSIRQAIPAFAAPPLRKESPPVVKKEDCPASTAPKEEPPAPPAPSQPTKSPAEVEEQATTTMSNSQQEIKTLENLEQLQI

Homology

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BLAST of Cp4.1LG07g06720 vs. ExPASy Swiss-Prot
Match: Q9SKN2 (Double-stranded RNA-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=DRB2 PE=1 SV=1)

HSP 1 Score: 444.5 bits (1142), Expect = 1.3e-123
Identity = 256/386 (66.32%), Postives = 294/386 (76.17%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGE+FE PQYCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALNALSNRGP HSLAARILDETGVYKNLLQEIAQRVGAPLP+YTTFRSGLGH PVFT
Sbjct: 61  AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQITIAR 180
           G VELAGITFTG+PAKNKKQAEKNAAMAAWS+LKQLAK+++SS  EPEN DELEQ+ IAR
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQLAKETSSSMPEPENIDELEQVIIAR 180

Query: 181 ALLNYRQKEKMAM-SNPNATIPFPRRLHIQSPRPTSPQRPPAPTSKILPLICQKAAPRSR 240
           AL+NYR KE +   S+ +A +PF ++  +Q+ RPTSPQ  PA TS+ILP IC K   RS 
Sbjct: 181 ALINYRIKENIGTGSSSSAPVPFAKKFFMQNLRPTSPQPSPATTSRILPFICPKQPSRSS 240

Query: 241 APFSANKILIPQSPTSAVEG-SGTCPQKFSAGAALSYIPVQQFRASCRGIAPPVTIRTAM 300
               A    I +   +A+E  S   PQ+  A     Y+P++QFR+ C G+APPVTIRTA+
Sbjct: 241 RSSLAATSGIDRIMAAALESRSYQRPQQRFANP--PYVPMRQFRSQCHGMAPPVTIRTAV 300

Query: 301 PVYSAPPLPQP-----SKLP-----PQQVTRVPPVRIAPPVSIRQAIPAFA-APPLRKES 360
           PV+SAPP+P P     ++LP     P  +   PPVRIAPPV+IR A+P FA APP+R  +
Sbjct: 301 PVFSAPPMPPPPCTNNTQLPSSVYVPSLMRTAPPVRIAPPVTIRTAVPVFASAPPVRIRT 360

Query: 361 ---PPVVKKEDCPASTAPKEEPPAPP 371
              P V   E   +S   KE  P  P
Sbjct: 361 AVKPTVEAGETRISSVQEKESIPVLP 384

[Close]

BLAST of Cp4.1LG07g06720 vs. ExPASy Swiss-Prot
Match: Q9AV50 (Double-stranded RNA-binding protein 6 OS=Oryza sativa subsp. japonica OX=39947 GN=DRB6 PE=2 SV=1)

HSP 1 Score: 401.0 bits (1029), Expect = 1.6e-110
Identity = 225/353 (63.74%), Postives = 261/353 (73.94%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLP+YTC+REGPDHAPRFKA VNFNGE FE P + +TLRQAEH+A
Sbjct: 1   MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQAEHAA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVAL AL+ RGP +SLAARILDETGVYKNLLQE+AQRVGAPLP YTT RSGLGHLPVFT
Sbjct: 61  AEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQITIAR 180
             VELAGITFTG+PAKNKKQAEKNAA AAWS+L+QL +Q ASSS+EPE+NDE EQI IAR
Sbjct: 121 CTVELAGITFTGDPAKNKKQAEKNAASAAWSSLRQLVRQEASSSNEPESNDEQEQIRIAR 180

Query: 181 ALLNYRQKEKMAMSNPNATIPFPRRLHIQSPRPTS-PQRPPAPTSKILPLICQKAAPRSR 240
           ALLNYR KEKMAM+N     PFP++  +Q  R T+ PQ   +  SKILPL   K+  RSR
Sbjct: 181 ALLNYRLKEKMAMANNPHASPFPKKFPMQPERRTAFPQSSHSSYSKILPLFRPKSNSRSR 240

Query: 241 APFSANKILIPQSPTSAVEGSGTCPQKFSAGAALSYIPVQQFRASCRGIAPPVTIRTAMP 300
               A      Q+P    E S     +F A  A  Y+PV  FR  C  +APPVT+RT++P
Sbjct: 241 PESPAASDAASQTPFRPTE-SPNPRSRFPAAEAAPYVPVGHFRMPCHSMAPPVTVRTSIP 300

Query: 301 VYSAPPLPQP----SKLPPQQVTRVPPVRIAPPVSIRQAIPAFAAPPLRKESP 349
           V+SAPPLP P     +LPP  ++  PP+R+A PV IR A P F    ++   P
Sbjct: 301 VFSAPPLPPPGARTQQLPP-LMSHPPPIRMASPVRIRPAPPLFTPSAVQGPKP 351

[Close]

BLAST of Cp4.1LG07g06720 vs. ExPASy Swiss-Prot
Match: Q8GY79 (Double-stranded RNA-binding protein 5 OS=Arabidopsis thaliana OX=3702 GN=DRB5 PE=1 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 7.7e-68
Identity = 162/343 (47.23%), Postives = 203/343 (59.18%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKA+VNFNGE+FE P YCSTLRQAEH+A
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEV+LN LS+R P  SL A+ILDETG+YKNLLQE A R G  LP YT+ RSG  H P F+
Sbjct: 61  AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQITIAR 180
             VELAG+TFTGE AK KKQAEKNAA+AAWS+LK++       SS    ++E EQ  +AR
Sbjct: 121 CTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKKM-------SSLDSQDEEKEQEAVAR 180

Query: 181 ALLNYRQKE--------------KMAMSNPNATIPFPRRLHIQSPRPTS----------- 240
            L  ++ KE                  SN +  I   R +++ + + +S           
Sbjct: 181 VLSRFKPKEVRRRETTNQWRRRTSQQDSNKDLLIERLRWINLLTNQASSSSSTSTPNQHK 240

Query: 241 --------PQRPPAPTSKILPLICQKAAPRSRAPFSANKILIPQSPTSAVEGSGTCPQKF 300
                   P  PP  +SKILP I Q     S+   +     +  S     E S    ++ 
Sbjct: 241 NSSFISLIPPPPPPKSSKILPFIQQYKDRSSQEAKTETATEMINSKAKVNETSTRLSKQM 300

Query: 301 SAGAALSYIPVQQFRASCRGIAPPVTIRTAMPVYSAPPLPQPS 311
                  Y  V     +   +AP V +R+ +PV++APP P+P+
Sbjct: 301 PFSDMNRYNFVGGCSVNPYSLAPAVQMRSVIPVFAAPP-PKPN 335

[Close]

BLAST of Cp4.1LG07g06720 vs. ExPASy Swiss-Prot
Match: Q9LJF5 (Double-stranded RNA-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=DRB3 PE=1 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 2.7e-65
Identity = 168/364 (46.15%), Postives = 212/364 (58.24%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCF+LPSYTC REGPDHAPRFKA+VNFNGE+FE P YCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVAL+ALS++GP  SL AR+LDETG+YKNLLQE A R G  LP YT+ RSG GH+P F+
Sbjct: 61  AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQITIAR 180
             VELAG++F GE AK KKQAEKNAA+AAW +L+++ +       +P   +E EQ  +AR
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKMPR------LDPLRGEEKEQEIVAR 180

Query: 181 ALLNYRQKEKMAMSNPNATIPFPRRLHIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240
            L  +R KE +    PN +    RR  I++ R    Q     T+    L+C+K       
Sbjct: 181 VLSRFRPKE-VKRREPNQS---RRRTVIRTIR----QNTTTTTTTTGDLLCEKLR----- 240

Query: 241 PFSANKILIPQSPTSAVEGSGTCPQKF---SAGAALSYIPVQQFRASCRGIA-------- 300
             S N        T+    S   PQ+F             V+     C+  A        
Sbjct: 241 --SINLY------TNEASSSSPPPQRFWPSRTNLTQEQSKVKSLLEKCQEYAEKKQSLDD 300

Query: 301 --PPVTIRTA--MPVYSAPPLPQPSKLPPQQVTRVPPVRIAPPVSIRQAIPAFAAPPLRK 350
             P + I+T+   P+ S+      SKL P     +   ++AP V IR  IP  +APP + 
Sbjct: 301 PKPEMRIKTSSPSPLSSSVERNCYSKLLPFPSFVLNHQKLAPAVHIRSVIPVCSAPPPKP 337

[Close]

BLAST of Cp4.1LG07g06720 vs. ExPASy Swiss-Prot
Match: Q0DKP4 (Double-stranded RNA-binding protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=DRB2 PE=2 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 7.9e-65
Identity = 191/417 (45.80%), Postives = 229/417 (54.92%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSY CIREGPDHAPRFKATVNFNGE FE P +CSTLR AEH+A
Sbjct: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALN LS RGP  SLAA++LDETG+YKNLLQE A R G  LP YTT RSG GH PVFT
Sbjct: 61  AEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAK--QSASSSSEPE-NNDELEQIT 180
             VELAG+TFTG P K KKQA+KNAAMAAWS LKQL +  + +SSS  P+ ++D+ EQI 
Sbjct: 121 CTVELAGMTFTGNPGKTKKQAQKNAAMAAWSELKQLPRVGEPSSSSCPPDHDDDDQEQII 180

Query: 181 IARALLNY---------RQKEKMAMSN---------PNATIPFPRRLHIQSPRPTSPQRP 240
           +AR L +          +QKEK   SN         P +   F  RLH+Q  +   P  P
Sbjct: 181 VARTLASLNQTNGGKTPQQKEKQQSSNRPSSRRPSYPKSNASFYGRLHLQ--KHAYPSVP 240

Query: 241 PAPTSKILPLICQKAAPRSRAPF--SANKILIPQSPT-----SAVEGSGTCPQKFSAGAA 300
           P      +    Q    +   P   +      P  PT         G  T P   S+   
Sbjct: 241 PEQAMYHMWHQVQATQQKPHFPMVPTMGSTGFPPPPTVLHMYPPPRGQFTMP---SSQDG 300

Query: 301 LSYIPVQQFRASCRGIAPPVTIRTAMPVYSAPPLPQPSKLPPQQVTRVPPVRI--APPVS 360
           L  IP       C   A PV  R   P    P    P +  P  V ++   R+  A  V 
Sbjct: 301 LGLIP-------CYPEASPVLPRYFSPY---PASFVPRRPLPVNVHKIHEKRLVGADMVE 360

Query: 361 IRQA--IPAFAAPPLRKESPPVV----KKEDCPASTAPKEEPPAPPAPSQPTKSPAE 382
           +  A     + AP     S   V    K+E   +S A ++E  +  A S  T+SP++
Sbjct: 361 LPDAAVFSRYTAPDFSGTSENAVQDNKKEEYTESSPASEQESKSHTASSSATRSPSQ 402

[Close]

BLAST of Cp4.1LG07g06720 vs. NCBI nr
Match: XP_023538476.1 (double-stranded RNA-binding protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 778 bits (2008), Expect = 5.26e-283
Identity = 408/408 (100.00%), Postives = 408/408 (100.00%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT
Sbjct: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQITIAR 180
           GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQITIAR
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQITIAR 180

Query: 181 ALLNYRQKEKMAMSNPNATIPFPRRLHIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240
           ALLNYRQKEKMAMSNPNATIPFPRRLHIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA
Sbjct: 181 ALLNYRQKEKMAMSNPNATIPFPRRLHIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240

Query: 241 PFSANKILIPQSPTSAVEGSGTCPQKFSAGAALSYIPVQQFRASCRGIAPPVTIRTAMPV 300
           PFSANKILIPQSPTSAVEGSGTCPQKFSAGAALSYIPVQQFRASCRGIAPPVTIRTAMPV
Sbjct: 241 PFSANKILIPQSPTSAVEGSGTCPQKFSAGAALSYIPVQQFRASCRGIAPPVTIRTAMPV 300

Query: 301 YSAPPLPQPSKLPPQQVTRVPPVRIAPPVSIRQAIPAFAAPPLRKESPPVVKKEDCPAST 360
           YSAPPLPQPSKLPPQQVTRVPPVRIAPPVSIRQAIPAFAAPPLRKESPPVVKKEDCPAST
Sbjct: 301 YSAPPLPQPSKLPPQQVTRVPPVRIAPPVSIRQAIPAFAAPPLRKESPPVVKKEDCPAST 360

Query: 361 APKEEPPAPPAPSQPTKSPAEVEEQATTTMSNSQQEIKTLENLEQLQI 408
           APKEEPPAPPAPSQPTKSPAEVEEQATTTMSNSQQEIKTLENLEQLQI
Sbjct: 361 APKEEPPAPPAPSQPTKSPAEVEEQATTTMSNSQQEIKTLENLEQLQI 408

[Close]

BLAST of Cp4.1LG07g06720 vs. NCBI nr
Match: XP_022937551.1 (double-stranded RNA-binding protein 2-like [Cucurbita moschata])

HSP 1 Score: 762 bits (1968), Expect = 6.32e-277
Identity = 402/408 (98.53%), Postives = 405/408 (99.26%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT
Sbjct: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQITIAR 180
           GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQITIAR
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQITIAR 180

Query: 181 ALLNYRQKEKMAMSNPNATIPFPRRLHIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240
           ALLNYRQKEKMAMSNPNATIPFP+RLHIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA
Sbjct: 181 ALLNYRQKEKMAMSNPNATIPFPKRLHIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240

Query: 241 PFSANKILIPQSPTSAVEGSGTCPQKFSAGAALSYIPVQQFRASCRGIAPPVTIRTAMPV 300
           PFSANKILIPQSPTSAVEGSGTCPQKFSAGAALSYIPVQQFRASCRGIAPPVTIRTAMPV
Sbjct: 241 PFSANKILIPQSPTSAVEGSGTCPQKFSAGAALSYIPVQQFRASCRGIAPPVTIRTAMPV 300

Query: 301 YSAPPLPQPSKLPPQQVTRVPPVRIAPPVSIRQAIPAFAAPPLRKESPPVVKKEDCPAST 360
           YSAPPLPQPSKLPPQQV RVPPVRIAPPVSIRQAIPAFAAPP+RKESP VVKKEDCPAST
Sbjct: 301 YSAPPLPQPSKLPPQQVIRVPPVRIAPPVSIRQAIPAFAAPPVRKESP-VVKKEDCPAST 360

Query: 361 APKEEPPAPPAPSQPTKSPAEVEEQATTTMSNSQQEIKTLENLEQLQI 408
           APKEEPPAP APSQPTKSPAEVEEQATTTM+NSQQEIKTLENLEQLQI
Sbjct: 361 APKEEPPAPSAPSQPTKSPAEVEEQATTTMANSQQEIKTLENLEQLQI 407

[Close]

BLAST of Cp4.1LG07g06720 vs. NCBI nr
Match: XP_022969656.1 (double-stranded RNA-binding protein 2-like [Cucurbita maxima])

HSP 1 Score: 758 bits (1957), Expect = 3.23e-275
Identity = 400/409 (97.80%), Postives = 404/409 (98.78%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT
Sbjct: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQITIAR 180
           GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQITIAR
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQITIAR 180

Query: 181 ALLNYRQKEKMAMSNPNATIPFPRRLHIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240
           ALLNYRQKEKMAMSNPNATIPFP++LHIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA
Sbjct: 181 ALLNYRQKEKMAMSNPNATIPFPKKLHIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240

Query: 241 PFSANKILIPQSPTSAVEGSGTCPQKFSAGAALSYIPVQQFRASCRGIAPPVTIRTAMPV 300
           PFSANKILIPQSPTSAVEGSGTCPQKFSAGAALSYIPVQQFRASCRGIAPPVTIRTAMPV
Sbjct: 241 PFSANKILIPQSPTSAVEGSGTCPQKFSAGAALSYIPVQQFRASCRGIAPPVTIRTAMPV 300

Query: 301 YSAPPLPQPSKLPPQQVTRVPPVRIAPPVSIRQAIPAFAAPPLRKESPPVVKKEDCPAST 360
           YSAPPLPQPSKLPPQQV RVPPVRIAPPVSIRQAIPAFAAPP RKESPPV+KKEDCPAST
Sbjct: 301 YSAPPLPQPSKLPPQQVIRVPPVRIAPPVSIRQAIPAFAAPPARKESPPVLKKEDCPAST 360

Query: 361 APKEEPPAPPAPSQPTKSP-AEVEEQATTTMSNSQQEIKTLENLEQLQI 408
           A KEEPPAP APSQPTKSP AEVEEQATTTM+NSQQEIKTLENLEQLQI
Sbjct: 361 ASKEEPPAPSAPSQPTKSPPAEVEEQATTTMANSQQEIKTLENLEQLQI 409

[Close]

BLAST of Cp4.1LG07g06720 vs. NCBI nr
Match: KAG6586020.1 (Double-stranded RNA-binding protein 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020796.1 Double-stranded RNA-binding protein 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 753 bits (1944), Expect = 2.87e-273
Identity = 397/408 (97.30%), Postives = 402/408 (98.53%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT
Sbjct: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQITIAR 180
           GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQITIAR
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQITIAR 180

Query: 181 ALLNYRQKEKMAMSNPNATIPFPRRLHIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240
           ALLNYRQKEKMAMSNPNATIPFP+RLHIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA
Sbjct: 181 ALLNYRQKEKMAMSNPNATIPFPKRLHIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240

Query: 241 PFSANKILIPQSPTSAVEGSGTCPQKFSAGAALSYIPVQQFRASCRGIAPPVTIRTAMPV 300
           PFSANKIL+PQSPTSAVEGSGTCPQKFSAGAALSYIPVQQFRASCRGIAPPVTIRTAMPV
Sbjct: 241 PFSANKILVPQSPTSAVEGSGTCPQKFSAGAALSYIPVQQFRASCRGIAPPVTIRTAMPV 300

Query: 301 YSAPPLPQPSKLPPQQVTRVPPVRIAPPVSIRQAIPAFAAPPLRKESPPVVKKEDCPAST 360
           YSAPPLPQPSKLPPQQV RVPPV IAPPVSIRQAIPAFAAPP+RKESP VVK EDCPAST
Sbjct: 301 YSAPPLPQPSKLPPQQVIRVPPVCIAPPVSIRQAIPAFAAPPVRKESP-VVKNEDCPAST 360

Query: 361 APKEEPPAPPAPSQPTKSPAEVEEQATTTMSNSQQEIKTLENLEQLQI 408
           APKEEPPAP AP+QPTKSPA VEEQATTTM+NSQQEIKTLENLEQLQI
Sbjct: 361 APKEEPPAPSAPTQPTKSPAGVEEQATTTMANSQQEIKTLENLEQLQI 407

[Close]

BLAST of Cp4.1LG07g06720 vs. NCBI nr
Match: XP_022152917.1 (double-stranded RNA-binding protein 2-like [Momordica charantia])

HSP 1 Score: 702 bits (1813), Expect = 2.42e-253
Identity = 373/408 (91.42%), Postives = 386/408 (94.61%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGE+FECPQYCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT
Sbjct: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQITIAR 180
           GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAK+SASSSSEPENNDELEQITIAR
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKESASSSSEPENNDELEQITIAR 180

Query: 181 ALLNYRQKEKMAMSNPNATIPFPRRLHIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240
           ALLNYRQKEKMAMSNPNATIPFP++L IQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA
Sbjct: 181 ALLNYRQKEKMAMSNPNATIPFPKKLQIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240

Query: 241 PFSANKILIPQSPTSAVEGSGTCPQKFSAGAALSYIPVQQFRASCRGIAPPVTIRTAMPV 300
           PFS NKI IPQS T A+EGSGT PQKFSAGAALSYIPV QFR SC GIAPPVTIRT MPV
Sbjct: 241 PFSTNKISIPQSQTPALEGSGTRPQKFSAGAALSYIPVPQFRTSCHGIAPPVTIRTTMPV 300

Query: 301 YSAPPLPQPSKLPPQQVTRVPPVRIAPPVSIRQAIPAFAAPPLRKESPPVVKKEDCPAST 360
           YSAPPLPQPSKLPPQQV RVPPVRIAPPVSIRQA+P FAAPP+RKE+PPVV+KED PA  
Sbjct: 301 YSAPPLPQPSKLPPQQVIRVPPVRIAPPVSIRQAVPVFAAPPVRKENPPVVRKEDFPA-- 360

Query: 361 APKEEPPAPPAPSQPTKSPAEVEEQATTTMSNSQQEIKTLENLEQLQI 408
           APKE+PP  PAPS PT SPAEVE QATT ++NSQQE KTLENLEQL+I
Sbjct: 361 APKEDPPVIPAPSPPTTSPAEVE-QATTAVANSQQESKTLENLEQLKI 405

[Close]

BLAST of Cp4.1LG07g06720 vs. ExPASy TrEMBL
Match: A0A6J1FAM9 (double-stranded RNA-binding protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111443925 PE=4 SV=1)

HSP 1 Score: 762 bits (1968), Expect = 3.06e-277
Identity = 402/408 (98.53%), Postives = 405/408 (99.26%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT
Sbjct: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQITIAR 180
           GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQITIAR
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQITIAR 180

Query: 181 ALLNYRQKEKMAMSNPNATIPFPRRLHIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240
           ALLNYRQKEKMAMSNPNATIPFP+RLHIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA
Sbjct: 181 ALLNYRQKEKMAMSNPNATIPFPKRLHIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240

Query: 241 PFSANKILIPQSPTSAVEGSGTCPQKFSAGAALSYIPVQQFRASCRGIAPPVTIRTAMPV 300
           PFSANKILIPQSPTSAVEGSGTCPQKFSAGAALSYIPVQQFRASCRGIAPPVTIRTAMPV
Sbjct: 241 PFSANKILIPQSPTSAVEGSGTCPQKFSAGAALSYIPVQQFRASCRGIAPPVTIRTAMPV 300

Query: 301 YSAPPLPQPSKLPPQQVTRVPPVRIAPPVSIRQAIPAFAAPPLRKESPPVVKKEDCPAST 360
           YSAPPLPQPSKLPPQQV RVPPVRIAPPVSIRQAIPAFAAPP+RKESP VVKKEDCPAST
Sbjct: 301 YSAPPLPQPSKLPPQQVIRVPPVRIAPPVSIRQAIPAFAAPPVRKESP-VVKKEDCPAST 360

Query: 361 APKEEPPAPPAPSQPTKSPAEVEEQATTTMSNSQQEIKTLENLEQLQI 408
           APKEEPPAP APSQPTKSPAEVEEQATTTM+NSQQEIKTLENLEQLQI
Sbjct: 361 APKEEPPAPSAPSQPTKSPAEVEEQATTTMANSQQEIKTLENLEQLQI 407

[Close]

BLAST of Cp4.1LG07g06720 vs. ExPASy TrEMBL
Match: A0A6J1HYF1 (double-stranded RNA-binding protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111468613 PE=4 SV=1)

HSP 1 Score: 758 bits (1957), Expect = 1.56e-275
Identity = 400/409 (97.80%), Postives = 404/409 (98.78%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT
Sbjct: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQITIAR 180
           GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQITIAR
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQITIAR 180

Query: 181 ALLNYRQKEKMAMSNPNATIPFPRRLHIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240
           ALLNYRQKEKMAMSNPNATIPFP++LHIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA
Sbjct: 181 ALLNYRQKEKMAMSNPNATIPFPKKLHIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240

Query: 241 PFSANKILIPQSPTSAVEGSGTCPQKFSAGAALSYIPVQQFRASCRGIAPPVTIRTAMPV 300
           PFSANKILIPQSPTSAVEGSGTCPQKFSAGAALSYIPVQQFRASCRGIAPPVTIRTAMPV
Sbjct: 241 PFSANKILIPQSPTSAVEGSGTCPQKFSAGAALSYIPVQQFRASCRGIAPPVTIRTAMPV 300

Query: 301 YSAPPLPQPSKLPPQQVTRVPPVRIAPPVSIRQAIPAFAAPPLRKESPPVVKKEDCPAST 360
           YSAPPLPQPSKLPPQQV RVPPVRIAPPVSIRQAIPAFAAPP RKESPPV+KKEDCPAST
Sbjct: 301 YSAPPLPQPSKLPPQQVIRVPPVRIAPPVSIRQAIPAFAAPPARKESPPVLKKEDCPAST 360

Query: 361 APKEEPPAPPAPSQPTKSP-AEVEEQATTTMSNSQQEIKTLENLEQLQI 408
           A KEEPPAP APSQPTKSP AEVEEQATTTM+NSQQEIKTLENLEQLQI
Sbjct: 361 ASKEEPPAPSAPSQPTKSPPAEVEEQATTTMANSQQEIKTLENLEQLQI 409

[Close]

BLAST of Cp4.1LG07g06720 vs. ExPASy TrEMBL
Match: A0A6J1DHJ7 (double-stranded RNA-binding protein 2-like OS=Momordica charantia OX=3673 GN=LOC111020530 PE=4 SV=1)

HSP 1 Score: 702 bits (1813), Expect = 1.17e-253
Identity = 373/408 (91.42%), Postives = 386/408 (94.61%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGE+FECPQYCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT
Sbjct: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQITIAR 180
           GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAK+SASSSSEPENNDELEQITIAR
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKESASSSSEPENNDELEQITIAR 180

Query: 181 ALLNYRQKEKMAMSNPNATIPFPRRLHIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240
           ALLNYRQKEKMAMSNPNATIPFP++L IQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA
Sbjct: 181 ALLNYRQKEKMAMSNPNATIPFPKKLQIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240

Query: 241 PFSANKILIPQSPTSAVEGSGTCPQKFSAGAALSYIPVQQFRASCRGIAPPVTIRTAMPV 300
           PFS NKI IPQS T A+EGSGT PQKFSAGAALSYIPV QFR SC GIAPPVTIRT MPV
Sbjct: 241 PFSTNKISIPQSQTPALEGSGTRPQKFSAGAALSYIPVPQFRTSCHGIAPPVTIRTTMPV 300

Query: 301 YSAPPLPQPSKLPPQQVTRVPPVRIAPPVSIRQAIPAFAAPPLRKESPPVVKKEDCPAST 360
           YSAPPLPQPSKLPPQQV RVPPVRIAPPVSIRQA+P FAAPP+RKE+PPVV+KED PA  
Sbjct: 301 YSAPPLPQPSKLPPQQVIRVPPVRIAPPVSIRQAVPVFAAPPVRKENPPVVRKEDFPA-- 360

Query: 361 APKEEPPAPPAPSQPTKSPAEVEEQATTTMSNSQQEIKTLENLEQLQI 408
           APKE+PP  PAPS PT SPAEVE QATT ++NSQQE KTLENLEQL+I
Sbjct: 361 APKEDPPVIPAPSPPTTSPAEVE-QATTAVANSQQESKTLENLEQLKI 405

[Close]

BLAST of Cp4.1LG07g06720 vs. ExPASy TrEMBL
Match: A0A0A0LSF2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G132060 PE=4 SV=1)

HSP 1 Score: 682 bits (1761), Expect = 1.36e-245
Identity = 367/415 (88.43%), Postives = 384/415 (92.53%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGE+FECPQYCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT
Sbjct: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQITIAR 180
           GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAK+SASSSSEPENNDELEQITIAR
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKESASSSSEPENNDELEQITIAR 180

Query: 181 ALLNYRQKEKMAMSNPNATIPFPRRLHIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240
           ALLNYRQKEK+AMSNPNATIPF ++L IQ+PRPTSPQRPPAPTSKILPLICQKAAPRSRA
Sbjct: 181 ALLNYRQKEKLAMSNPNATIPFHKKLQIQTPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240

Query: 241 PFSANKILIPQSPTSAVEGSGTCPQKFSAGAALSYIPVQQFRASCRGIAPPVTIRTAMPV 300
           PFSANKI IPQS T A+EGSG  PQKFSAG ALSYIPVQQFR SC GIAPPVTIRTAMPV
Sbjct: 241 PFSANKIPIPQSQTPALEGSGPRPQKFSAGTALSYIPVQQFRTSCHGIAPPVTIRTAMPV 300

Query: 301 YSAPPLPQPSKLPPQQVTRVPPVRIAPPVSIRQAIPAFAAPPLRKESPPVVKKEDCPAST 360
           +SAPPLPQPSKLPPQQV RVPP+RIAPPVSIRQAIP FAAPP+RKE+PPVVKKE+CPA  
Sbjct: 301 FSAPPLPQPSKLPPQQVIRVPPIRIAPPVSIRQAIPVFAAPPVRKENPPVVKKEECPAPA 360

Query: 361 APKEEPPAPPAP------SQPTK-SPAEVEEQATTTMSNSQQEIKTLENLEQLQI 408
           APKE+PPA  AP      S PT  S AEVE QAT T+ NS +E KTLENLE+L+I
Sbjct: 361 APKEDPPALSAPVTVTVPSPPTVVSTAEVE-QATFTVVNSPEETKTLENLEELKI 414

[Close]

BLAST of Cp4.1LG07g06720 vs. ExPASy TrEMBL
Match: A0A6J1HMA2 (double-stranded RNA-binding protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111464869 PE=4 SV=1)

HSP 1 Score: 681 bits (1757), Expect = 4.96e-245
Identity = 366/411 (89.05%), Postives = 380/411 (92.46%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSY CIREGPDHAPRFKATVNFNGE+FECPQYCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT
Sbjct: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQITIAR 180
           GIVELAGITFTGEPAKNKKQAEKNAAMAAWS+LKQLAK+SASSSSEPENNDELEQITIAR
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKESASSSSEPENNDELEQITIAR 180

Query: 181 ALLNYRQKEKMAMSNPNATIPFPRRLHIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240
           ALLNYRQKEKMAMSNPNATIPFP++L IQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA
Sbjct: 181 ALLNYRQKEKMAMSNPNATIPFPKKLQIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240

Query: 241 PFSANKILIPQSPTSAVEGSGTC-PQKFSAGAA-LSYIPVQQFRASCRGIAPPVTIRTAM 300
           PFSANKI IP + TSA+EGS T  PQKFSAGAA LSYIPV Q+R SC GIAPPVTIRT M
Sbjct: 241 PFSANKIPIPHAQTSALEGSATPRPQKFSAGAAALSYIPVHQYRTSCHGIAPPVTIRTTM 300

Query: 301 PVYSAPPLPQPSKLPPQQVTRVPPVRIAPPVSIRQAIPAFAAPPLRKESPPVVKKEDCPA 360
           PVYSAPPLPQP KLPPQQV RVPPVRIAPPVSIRQAIP FAAPP+RKE+ P VKKEDCPA
Sbjct: 301 PVYSAPPLPQPLKLPPQQVIRVPPVRIAPPVSIRQAIPVFAAPPVRKENAPAVKKEDCPA 360

Query: 361 STAPKEEPPAP-PAPSQPTKSPAEVEEQATTTMSNSQQEIKTLENLEQLQI 408
             APKE   AP P PS  T+SPAEV EQ TTT+ NSQQE KTLENLE+L+I
Sbjct: 361 PAAPKENLAAPAPVPSPRTESPAEVVEQDTTTLVNSQQEAKTLENLEELKI 411

[Close]

BLAST of Cp4.1LG07g06720 vs. TAIR 10
Match: AT2G28380.1 (dsRNA-binding protein 2 )

HSP 1 Score: 444.5 bits (1142), Expect = 9.2e-125
Identity = 256/386 (66.32%), Postives = 294/386 (76.17%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGE+FE PQYCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVALNALSNRGP HSLAARILDETGVYKNLLQEIAQRVGAPLP+YTTFRSGLGH PVFT
Sbjct: 61  AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQITIAR 180
           G VELAGITFTG+PAKNKKQAEKNAAMAAWS+LKQLAK+++SS  EPEN DELEQ+ IAR
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQLAKETSSSMPEPENIDELEQVIIAR 180

Query: 181 ALLNYRQKEKMAM-SNPNATIPFPRRLHIQSPRPTSPQRPPAPTSKILPLICQKAAPRSR 240
           AL+NYR KE +   S+ +A +PF ++  +Q+ RPTSPQ  PA TS+ILP IC K   RS 
Sbjct: 181 ALINYRIKENIGTGSSSSAPVPFAKKFFMQNLRPTSPQPSPATTSRILPFICPKQPSRSS 240

Query: 241 APFSANKILIPQSPTSAVEG-SGTCPQKFSAGAALSYIPVQQFRASCRGIAPPVTIRTAM 300
               A    I +   +A+E  S   PQ+  A     Y+P++QFR+ C G+APPVTIRTA+
Sbjct: 241 RSSLAATSGIDRIMAAALESRSYQRPQQRFANP--PYVPMRQFRSQCHGMAPPVTIRTAV 300

Query: 301 PVYSAPPLPQP-----SKLP-----PQQVTRVPPVRIAPPVSIRQAIPAFA-APPLRKES 360
           PV+SAPP+P P     ++LP     P  +   PPVRIAPPV+IR A+P FA APP+R  +
Sbjct: 301 PVFSAPPMPPPPCTNNTQLPSSVYVPSLMRTAPPVRIAPPVTIRTAVPVFASAPPVRIRT 360

Query: 361 ---PPVVKKEDCPASTAPKEEPPAPP 371
              P V   E   +S   KE  P  P
Sbjct: 361 AVKPTVEAGETRISSVQEKESIPVLP 384

[Close]

BLAST of Cp4.1LG07g06720 vs. TAIR 10
Match: AT5G41070.1 (dsRNA-binding protein 5 )

HSP 1 Score: 259.2 bits (661), Expect = 5.5e-69
Identity = 162/343 (47.23%), Postives = 203/343 (59.18%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKA+VNFNGE+FE P YCSTLRQAEH+A
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEV+LN LS+R P  SL A+ILDETG+YKNLLQE A R G  LP YT+ RSG  H P F+
Sbjct: 61  AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQITIAR 180
             VELAG+TFTGE AK KKQAEKNAA+AAWS+LK++       SS    ++E EQ  +AR
Sbjct: 121 CTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKKM-------SSLDSQDEEKEQEAVAR 180

Query: 181 ALLNYRQKE--------------KMAMSNPNATIPFPRRLHIQSPRPTS----------- 240
            L  ++ KE                  SN +  I   R +++ + + +S           
Sbjct: 181 VLSRFKPKEVRRRETTNQWRRRTSQQDSNKDLLIERLRWINLLTNQASSSSSTSTPNQHK 240

Query: 241 --------PQRPPAPTSKILPLICQKAAPRSRAPFSANKILIPQSPTSAVEGSGTCPQKF 300
                   P  PP  +SKILP I Q     S+   +     +  S     E S    ++ 
Sbjct: 241 NSSFISLIPPPPPPKSSKILPFIQQYKDRSSQEAKTETATEMINSKAKVNETSTRLSKQM 300

Query: 301 SAGAALSYIPVQQFRASCRGIAPPVTIRTAMPVYSAPPLPQPS 311
                  Y  V     +   +AP V +R+ +PV++APP P+P+
Sbjct: 301 PFSDMNRYNFVGGCSVNPYSLAPAVQMRSVIPVFAAPP-PKPN 335

[Close]

BLAST of Cp4.1LG07g06720 vs. TAIR 10
Match: AT3G26932.1 (dsRNA-binding protein 3 )

HSP 1 Score: 250.8 bits (639), Expect = 1.9e-66
Identity = 168/364 (46.15%), Postives = 212/364 (58.24%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCF+LPSYTC REGPDHAPRFKA+VNFNGE+FE P YCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVAL+ALS++GP  SL AR+LDETG+YKNLLQE A R G  LP YT+ RSG GH+P F+
Sbjct: 61  AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQITIAR 180
             VELAG++F GE AK KKQAEKNAA+AAW +L+++ +       +P   +E EQ  +AR
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKMPR------LDPLRGEEKEQEIVAR 180

Query: 181 ALLNYRQKEKMAMSNPNATIPFPRRLHIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240
            L  +R KE +    PN +    RR  I++ R    Q     T+    L+C+K       
Sbjct: 181 VLSRFRPKE-VKRREPNQS---RRRTVIRTIR----QNTTTTTTTTGDLLCEKLR----- 240

Query: 241 PFSANKILIPQSPTSAVEGSGTCPQKF---SAGAALSYIPVQQFRASCRGIA-------- 300
             S N        T+    S   PQ+F             V+     C+  A        
Sbjct: 241 --SINLY------TNEASSSSPPPQRFWPSRTNLTQEQSKVKSLLEKCQEYAEKKQSLDD 300

Query: 301 --PPVTIRTA--MPVYSAPPLPQPSKLPPQQVTRVPPVRIAPPVSIRQAIPAFAAPPLRK 350
             P + I+T+   P+ S+      SKL P     +   ++AP V IR  IP  +APP + 
Sbjct: 301 PKPEMRIKTSSPSPLSSSVERNCYSKLLPFPSFVLNHQKLAPAVHIRSVIPVCSAPPPKP 337

[Close]

BLAST of Cp4.1LG07g06720 vs. TAIR 10
Match: AT3G26932.2 (dsRNA-binding protein 3 )

HSP 1 Score: 250.8 bits (639), Expect = 1.9e-66
Identity = 168/364 (46.15%), Postives = 212/364 (58.24%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA 60
           MYKNQLQELAQRSCF+LPSYTC REGPDHAPRFKA+VNFNGE+FE P YCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEVAL+ALS++GP  SL AR+LDETG+YKNLLQE A R G  LP YT+ RSG GH+P F+
Sbjct: 61  AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDELEQITIAR 180
             VELAG++F GE AK KKQAEKNAA+AAW +L+++ +       +P   +E EQ  +AR
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKMPR------LDPLRGEEKEQEIVAR 180

Query: 181 ALLNYRQKEKMAMSNPNATIPFPRRLHIQSPRPTSPQRPPAPTSKILPLICQKAAPRSRA 240
            L  +R KE +    PN +    RR  I++ R    Q     T+    L+C+K       
Sbjct: 181 VLSRFRPKE-VKRREPNQS---RRRTVIRTIR----QNTTTTTTTTGDLLCEKLR----- 240

Query: 241 PFSANKILIPQSPTSAVEGSGTCPQKF---SAGAALSYIPVQQFRASCRGIA-------- 300
             S N        T+    S   PQ+F             V+     C+  A        
Sbjct: 241 --SINLY------TNEASSSSPPPQRFWPSRTNLTQEQSKVKSLLEKCQEYAEKKQSLDD 300

Query: 301 --PPVTIRTA--MPVYSAPPLPQPSKLPPQQVTRVPPVRIAPPVSIRQAIPAFAAPPLRK 350
             P + I+T+   P+ S+      SKL P     +   ++AP V IR  IP  +APP + 
Sbjct: 301 PKPEMRIKTSSPSPLSSSVERNCYSKLLPFPSFVLNHQKLAPAVHIRSVIPVCSAPPPKP 337

[Close]

BLAST of Cp4.1LG07g06720 vs. TAIR 10
Match: AT3G62800.1 (double-stranded-RNA-binding protein 4 )

HSP 1 Score: 126.7 bits (317), Expect = 4.2e-29
Identity = 73/172 (42.44%), Postives = 96/172 (55.81%), Query Frame = 0


Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFECPQYCSTLRQAEHSA 60
           +YK QLQ  A +    LP Y   REGP HAPRF+  V F G+ F+  ++  TL+ AEH+A
Sbjct: 4   VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63

Query: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           A++A+ +L+ + P     A        YKNLLQEIAQ+  + LP Y T  SG  H P FT
Sbjct: 64  AKIAVASLTPQSPEGIDVA--------YKNLLQEIAQKESSLLPFYATATSGPSHAPTFT 123

Query: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKQSASSSSEPENNDE 173
             VE AG  F+GE AK KK AE +AA  A+ ++K        S + P    E
Sbjct: 124 STVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIKNGNSNQTGSPTLPSERQE 167

The following BLAST results are available for this feature:

BLAST of Cp4.1LG07g06720 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SKN2	1.3e-123	66.32	Double-stranded RNA-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=DRB2 PE...	[more]
Q9AV50	1.6e-110	63.74	Double-stranded RNA-binding protein 6 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
Q8GY79	7.7e-68	47.23	Double-stranded RNA-binding protein 5 OS=Arabidopsis thaliana OX=3702 GN=DRB5 PE...	[more]
Q9LJF5	2.7e-65	46.15	Double-stranded RNA-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=DRB3 PE...	[more]
Q0DKP4	7.9e-65	45.80	Double-stranded RNA-binding protein 2 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]

BLAST of Cp4.1LG07g06720 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023538476.1	5.26e-283	100.00	double-stranded RNA-binding protein 2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022937551.1	6.32e-277	98.53	double-stranded RNA-binding protein 2-like [Cucurbita moschata]	[more]
XP_022969656.1	3.23e-275	97.80	double-stranded RNA-binding protein 2-like [Cucurbita maxima]	[more]
KAG6586020.1	2.87e-273	97.30	Double-stranded RNA-binding protein 2, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_022152917.1	2.42e-253	91.42	double-stranded RNA-binding protein 2-like [Momordica charantia]	[more]

BLAST of Cp4.1LG07g06720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FAM9	3.06e-277	98.53	double-stranded RNA-binding protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1HYF1	1.56e-275	97.80	double-stranded RNA-binding protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1DHJ7	1.17e-253	91.42	double-stranded RNA-binding protein 2-like OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A0A0LSF2	1.36e-245	88.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G132060 PE=4 SV=1	[more]
A0A6J1HMA2	4.96e-245	89.05	double-stranded RNA-binding protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]

BLAST of Cp4.1LG07g06720 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G28380.1	9.2e-125	66.32	dsRNA-binding protein 2	[more]
AT5G41070.1	5.5e-69	47.23	dsRNA-binding protein 5	[more]
AT3G26932.1	1.9e-66	46.15	dsRNA-binding protein 3	[more]
AT3G26932.2	1.9e-66	46.15	dsRNA-binding protein 3	[more]
AT3G62800.1	4.2e-29	42.44	double-stranded-RNA-binding protein 4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 383..403
None	No IPR available	GENE3D	3.30.160.20		coord: 81..161 e-value: 2.2E-20 score: 74.7
None	No IPR available	GENE3D	3.30.160.20		coord: 1..68 e-value: 6.7E-23 score: 82.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 362..376
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 195..224
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 378..408
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 343..408
None	No IPR available	PANTHER	PTHR46031:SF7	DOUBLE-STRANDED RNA-BINDING PROTEIN 2-LIKE	coord: 1..403
None	No IPR available	PANTHER	PTHR46031	FAMILY NOT NAMED	coord: 1..403
None	No IPR available	SUPERFAMILY	54768	dsRNA-binding domain-like	coord: 2..69
None	No IPR available	SUPERFAMILY	54768	dsRNA-binding domain-like	coord: 88..157
IPR014720	Double-stranded RNA-binding domain	SMART	SM00358	DRBM_3	coord: 2..69 e-value: 4.0E-20 score: 82.9 coord: 88..154 e-value: 2.8E-19 score: 80.1
IPR014720	Double-stranded RNA-binding domain	PFAM	PF00035	dsrm	coord: 2..68 e-value: 1.3E-15 score: 57.8 coord: 88..152 e-value: 1.5E-11 score: 44.9
IPR014720	Double-stranded RNA-binding domain	PROSITE	PS50137	DS_RBD	coord: 1..70 score: 11.96538
IPR014720	Double-stranded RNA-binding domain	PROSITE	PS50137	DS_RBD	coord: 87..155 score: 10.994328
IPR044451	AtDRB-like, second double-stranded RNA binding domain, plant	CDD	cd19908	DSRM_AtDRB-like_rpt2	coord: 86..154 e-value: 1.00737E-37 score: 129.136
IPR044450	AtDRB-like, first double-stranded RNA binding domain, plant	CDD	cd19907	DSRM_AtDRB-like_rpt1	coord: 1..69 e-value: 2.32593E-41 score: 138.763

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG07g06720.1	Cp4.1LG07g06720.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0035196	production of miRNAs involved in gene silencing by miRNA
biological_process	GO:0070919	production of siRNA involved in gene silencing by small RNA
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003725	double-stranded RNA binding