Cp4.1LG07g06240 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG07g06240
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	zinc finger CCCH domain-containing protein 20-like
Location	Cp4.1LG07: 3599148 .. 3600062 (+)
RNA-Seq Expression	Cp4.1LG07g06240
Synteny	Cp4.1LG07g06240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCTCAATCCATCGGCCCATTTTTCATCCTGGGACTCCCTTGACGATCCCACCGCCGCCGCTACCGCCGCCGCAATCTCCTCCTATCTCACTGGCGGTCACGTGTCGCCGCTTGATTCGCCCACGAGAGCGGTCATGGAGTTCGATTCGTCATTCTGGGAGGAACAGGATATGCCGGCGGCGGTGGACGCGTTCACCTGCGACGATTTTCGTATGTACGAGTTCAAAGTCCGTTCGTGTACACGTGGGAGGTCGCACGATTGGACTAAATGTCCGAACGCTCACGCCGGCGAGAAGGCTCGCCGCCGTGATCCGAGGAAGTTCAACTATTCTGGTACTGAATGCCCTGCTTTACGCCATGGGTGTTGTAACAAAGGGGACGCCTGTGAGTTCGCTCATGGTACATTCGAAATTTGGCTCCACCCAGACCGGTACCGGACTCAGCCGTGCCGTGACGGAATCGCCTGCCGGCGGCGAGTCTGTTTCTTCGCCCATACGTTGGAGCAACTCCGGATTCCGGCGAAACAGAGCCTCATGTCTCCACGGGCGGCTAAGGAAATCGCCGCTGCTGTAACATCGCCGACGTCGATCCTAATCTCGCCGGATTCGCCTCCAATGTCTCCGATCAGCCCTGTAACCACCGGCGGCGAATCGTTCAGCAGATTAGTCCCACTGATGCACAATCTCCAGCTTGACAAATCAAAGAAAAACCCAGCCGTCTCCGGCTTCGATTCAAGCCCCCGGCGGAACTCCGGCGGGTTCGATCTGTGGGACAGAACTTTCGAAGAAGAACCGGCAATGGAGAGAGTGGAATCTGGAAGAAACCTCCGTGCCCAAATGTACGCCAAATTAATGAGAGAGAATTCGGTGGACAGAATCCGGCCACTGATATCGGCCGGATCTCAAAGCTAA

mRNA sequence

ATGCTTCTCAATCCATCGGCCCATTTTTCATCCTGGGACTCCCTTGACGATCCCACCGCCGCCGCTACCGCCGCCGCAATCTCCTCCTATCTCACTGGCGGTCACGTGTCGCCGCTTGATTCGCCCACGAGAGCGGTCATGGAGTTCGATTCGTCATTCTGGGAGGAACAGGATATGCCGGCGGCGGTGGACGCGTTCACCTGCGACGATTTTCGTATGTACGAGTTCAAAGTCCGTTCGTGTACACGTGGGAGGTCGCACGATTGGACTAAATGTCCGAACGCTCACGCCGGCGAGAAGGCTCGCCGCCGTGATCCGAGGAAGTTCAACTATTCTGGTACTGAATGCCCTGCTTTACGCCATGGGTGTTGTAACAAAGGGGACGCCTGTGAGTTCGCTCATGGTACATTCGAAATTTGGCTCCACCCAGACCGGTACCGGACTCAGCCGTGCCGTGACGGAATCGCCTGCCGGCGGCGAGTCTGTTTCTTCGCCCATACGTTGGAGCAACTCCGGATTCCGGCGAAACAGAGCCTCATGTCTCCACGGGCGGCTAAGGAAATCGCCGCTGCTGTAACATCGCCGACGTCGATCCTAATCTCGCCGGATTCGCCTCCAATGTCTCCGATCAGCCCTGTAACCACCGGCGGCGAATCGTTCAGCAGATTAGTCCCACTGATGCACAATCTCCAGCTTGACAAATCAAAGAAAAACCCAGCCGTCTCCGGCTTCGATTCAAGCCCCCGGCGGAACTCCGGCGGGTTCGATCTGTGGGACAGAACTTTCGAAGAAGAACCGGCAATGGAGAGAGTGGAATCTGGAAGAAACCTCCGTGCCCAAATGTACGCCAAATTAATGAGAGAGAATTCGGTGGACAGAATCCGGCCACTGATATCGGCCGGATCTCAAAGCTAA

Coding sequence (CDS)

ATGCTTCTCAATCCATCGGCCCATTTTTCATCCTGGGACTCCCTTGACGATCCCACCGCCGCCGCTACCGCCGCCGCAATCTCCTCCTATCTCACTGGCGGTCACGTGTCGCCGCTTGATTCGCCCACGAGAGCGGTCATGGAGTTCGATTCGTCATTCTGGGAGGAACAGGATATGCCGGCGGCGGTGGACGCGTTCACCTGCGACGATTTTCGTATGTACGAGTTCAAAGTCCGTTCGTGTACACGTGGGAGGTCGCACGATTGGACTAAATGTCCGAACGCTCACGCCGGCGAGAAGGCTCGCCGCCGTGATCCGAGGAAGTTCAACTATTCTGGTACTGAATGCCCTGCTTTACGCCATGGGTGTTGTAACAAAGGGGACGCCTGTGAGTTCGCTCATGGTACATTCGAAATTTGGCTCCACCCAGACCGGTACCGGACTCAGCCGTGCCGTGACGGAATCGCCTGCCGGCGGCGAGTCTGTTTCTTCGCCCATACGTTGGAGCAACTCCGGATTCCGGCGAAACAGAGCCTCATGTCTCCACGGGCGGCTAAGGAAATCGCCGCTGCTGTAACATCGCCGACGTCGATCCTAATCTCGCCGGATTCGCCTCCAATGTCTCCGATCAGCCCTGTAACCACCGGCGGCGAATCGTTCAGCAGATTAGTCCCACTGATGCACAATCTCCAGCTTGACAAATCAAAGAAAAACCCAGCCGTCTCCGGCTTCGATTCAAGCCCCCGGCGGAACTCCGGCGGGTTCGATCTGTGGGACAGAACTTTCGAAGAAGAACCGGCAATGGAGAGAGTGGAATCTGGAAGAAACCTCCGTGCCCAAATGTACGCCAAATTAATGAGAGAGAATTCGGTGGACAGAATCCGGCCACTGATATCGGCCGGATCTCAAAGCTAA

Protein sequence

MLLNPSAHFSSWDSLDDPTAAATAAAISSYLTGGHVSPLDSPTRAVMEFDSSFWEEQDMPAAVDAFTCDDFRMYEFKVRSCTRGRSHDWTKCPNAHAGEKARRRDPRKFNYSGTECPALRHGCCNKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIAAAVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMHNLQLDKSKKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIRPLISAGSQS

Homology

[Close]

BLAST of Cp4.1LG07g06240 vs. ExPASy Swiss-Prot
Match: O82199 (Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=At2g19810 PE=2 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 1.4e-66
Identity = 148/341 (43.40%), Postives = 183/341 (53.67%), Query Frame = 0


Query: 4   NPSAHFSSWDSLDDPTAA-------------ATAAAISSYLTGGHVSPLDSPTRAVMEFD 63
           NP+ H   W   +D T +                A +  YL      P   P  +     
Sbjct: 11  NPTVHIPPWPLSEDLTVSDIYGSPDGGSSMMEALAELQRYLPSNEPDPDSDPDLS----- 70

Query: 64  SSFWEEQDMPAAVDAFTCDDFRMYEFKVRSCTRGRSHDWTKCPNAHAGEKARRRDPRKFN 123
                  D P  +DA+TCD FRMYEFKVR C RGRSHDWT+CP AH GEKARRRDPRKF+
Sbjct: 71  -----GPDSP--IDAYTCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFH 130

Query: 124 YSGTECPALRHGCCNKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQ 183
           YSGT CP  R GCC +GDACEF+HG FE WLHP RYRTQPC+DG  CRRRVCFFAH+ +Q
Sbjct: 131 YSGTACPEFRKGCCKRGDACEFSHGVFECWLHPARYRTQPCKDGGNCRRRVCFFAHSPDQ 190

Query: 184 LRIPAKQSLMSPRAAKEIAAAVTSPTSILISP--DSPPMSPISPVTTGGESFSR------ 243
           +R+   QS     +   ++  +       ISP  +SPP+SP     +     SR      
Sbjct: 191 IRVLPNQSPDRVDSFDVLSPTIRRAFQFSISPSSNSPPVSPRGDSDSSCSLLSRSLGSNL 250

Query: 244 ---LVPLMHNLQLDKSKK------NPAVSGFDS---SPR---------------RNSGGF 297
              +V  + NLQL+K K       N  + G+ S   SPR                  G  
Sbjct: 251 GNDVVASLRNLQLNKVKSSLSSSYNNQIGGYGSGFGSPRGSVLGPGFRSLPTTPTRPGFM 310

[Close]

BLAST of Cp4.1LG07g06240 vs. ExPASy Swiss-Prot
Match: O82307 (Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN=At2g25900 PE=2 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 1.3e-64
Identity = 145/313 (46.33%), Postives = 183/313 (58.47%), Query Frame = 0


Query: 4   NPSAHFSSWDSLDDPTAAATAAAISSYLTGGHVSP------LDS--------PTRAVMEF 63
           +P+ H   WD ++DPTA  ++   S  L   +  P      LDS        P+  +   
Sbjct: 11  HPTIHIPQWDQINDPTATISSPFSSVNLNSVNDYPHSPSPYLDSFASLFRYLPSNELTND 70

Query: 64  DSSFWEEQDMPAAVDAFTCDDFRMYEFKVRSCTRGRSHDWTKCPNAHAGEKARRRDPRKF 123
             S   ++  P   D+F+ D+FR+YEFK+R C RGRSHDWT+CP AH GEKARRRDPRKF
Sbjct: 71  SDSSSGDESSP-LTDSFSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKF 130

Query: 124 NYSGTECPALRHGCCNKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLE 183
           +YSGT CP  R G C +GD+CEF+HG FE WLHP RYRTQPC+DG +CRRR+CFFAHT E
Sbjct: 131 HYSGTACPEFRKGSCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTTE 190

Query: 184 QLRIPAKQSLMSPRAAKEIAAAVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMHN 243
           QLR+      + P      +   TSPTSIL+SP   P S   P++    S   L+  M  
Sbjct: 191 QLRV--LPCSLDPDLG-FFSGLATSPTSILVSPSFSPPSESPPLS---PSTGELIASMRK 250

Query: 244 LQLDK---SKKNPAVSG----FDSSPRRNSGGFDLWDR----TFEEEPAMERVESGRNLR 292
           +QL+    S  +P  S     F SS R        W R      EE PAME VESG+ LR
Sbjct: 251 MQLNGGGCSWSSPMRSAVRLPFSSSLRPIQAA--TWPRIREFEIEEAPAMEFVESGKELR 310

[Close]

BLAST of Cp4.1LG07g06240 vs. ExPASy Swiss-Prot
Match: Q9M0G2 (Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana OX=3702 GN=At4g29190 PE=2 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 8.9e-61
Identity = 132/269 (49.07%), Postives = 161/269 (59.85%), Query Frame = 0


Query: 63  VDAFTCDDFRMYEFKVRSCTRGRSHDWTKCPNAHAGEKARRRDPRKFNYSGTECPALRHG 122
           +DA++CD FRMY+FKVR C RGRSHDWT+CP AH GEKARRRDPRK++YSGT CP  R G
Sbjct: 72  IDAYSCDHFRMYDFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKG 131

Query: 123 CCNKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPAKQS---- 182
            C KGD+CEFAHG FE WLHP RYRTQPC+DG  C R++CFFAH+ +QLR    +S    
Sbjct: 132 GCKKGDSCEFAHGVFECWLHPARYRTQPCKDGGNCLRKICFFAHSPDQLRFLHTRSPDRV 191

Query: 183 ----LMSPRAAKEIAAAVTSPTSILISPDSPPMSP-----ISPVT------TGGESFSRL 242
               + SP  A+    ++ SP S      SPPMSP      SP+T       G  S + +
Sbjct: 192 DSFDVSSPIRARAFQLSI-SPVS-----GSPPMSPRADSESSPMTQSLSRSLGSCSINDV 251

Query: 243 VPLMHNLQLDKSKKNPAVS---------------GFDSSPR--RNSGGFDLWDRTFEEEP 295
           VP   NLQ +  K  P  +               GF S P      G  D+W+   EEEP
Sbjct: 252 VPSFRNLQFNSVKSFPRNNPLFGFGSPRGSILGPGFQSLPTTPTRPGNLDIWEYGLEEEP 311

[Close]

BLAST of Cp4.1LG07g06240 vs. ExPASy Swiss-Prot
Match: Q9FU27 (Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0192000 PE=2 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 1.6e-57
Identity = 132/303 (43.56%), Postives = 172/303 (56.77%), Query Frame = 0


Query: 55  EEQDMPAAVDAFTCDDFRMYEFKVRSCTRGRSHDWTKCPNAHAGEKARRRDPRKFNYSGT 114
           E   M AAVDA+ CD+FRMYEFKVR C RGRSHDWT+CP AH GEKARRRDPRK++YSGT
Sbjct: 61  EAAAMAAAVDAYACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRKYHYSGT 120

Query: 115 ECPALRHGCCNKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRI- 174
            CP  R G C +GDACE+AHG FE WLHP RYRTQPC+DG ACRRRVCFFAHT +QLR+ 
Sbjct: 121 ACPDFRKGGCKRGDACEYAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVL 180

Query: 175 PAKQSLMSPRAAKEIAAAV--------------------TSPTSILISP------DSPPM 234
           PA+QS     A+  +A +                     +SPTS L+SP      +SPP+
Sbjct: 181 PAQQSSPRSVASSPLAESYDGSPLRRQAFESYLTKTIMSSSPTSTLMSPPKSPPSESPPL 240

Query: 235 SP--ISPVTTG-----GESFSRLVPLMHNLQLDKSKKN-------PAVSGFDSSPRRNSG 292
           SP   + +  G     G   + ++     L+L+K K +       P+ S    SP+  +G
Sbjct: 241 SPDGAAAIRRGSWPGVGSPVNDVLASFRQLRLNKVKSSPSGGWSYPSSSAVYGSPKAATG 300

[Close]

BLAST of Cp4.1LG07g06240 vs. ExPASy Swiss-Prot
Match: Q6L4N4 (Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0195200 PE=2 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.2e-54
Identity = 137/330 (41.52%), Postives = 168/330 (50.91%), Query Frame = 0


Query: 55  EEQDMPAAVDAFTCDDFRMYEFKVRSCTRGRSHDWTKCPNAHAGEKARRRDPRKFNYSGT 114
           E   + AAVDA+ CD+FRMYEFKVR C RGRSHDWT+CP AH GEKARRRDPR++ YSGT
Sbjct: 62  EAAAVAAAVDAYACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRRYCYSGT 121

Query: 115 ECPALRHGCCNKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRI- 174
            CP  R G C +GDACEFAHG FE WLHP RYRTQPC+DG ACRRRVCFFAHT +QLR+ 
Sbjct: 122 ACPDFRKGGCKRGDACEFAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVL 181

Query: 175 --PAKQSLMSPR---------AAKEIAAAV--------------------TSPTSILISP 234
               +Q   SPR         AA  +A +                     +SPTS L+SP
Sbjct: 182 PPSQQQGSNSPRGCGGGGAGAAASPLAESYDGSPLRRQAFESYLTKSIMSSSPTSTLVSP 241

Query: 235 DSPPMS---PISPVTTG----------GESFSRLVPLMHNLQLDKSKKNPAVSGF----- 294
              P S   P+SP   G          G   + +   +  L+L   +  P+ + F     
Sbjct: 242 PRSPPSESPPLSPDAAGALRRGAWAGVGSPVNDVHVSLRQLRLGSPRSAPSCASFLPAGY 301

Query: 295 -------------------DSSPRRNS--------------GGFDLWDRTFEEEPAMERV 302
                               S+P R S                 DL     EEE  MERV
Sbjct: 302 QYGSPKSPAAAAAAALYSLPSTPTRLSPVTVTTASGATVTVEPLDL--GLIEEEQPMERV 361

[Close]

BLAST of Cp4.1LG07g06240 vs. NCBI nr
Match: XP_023537964.1 (zinc finger CCCH domain-containing protein 20-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 625 bits (1611), Expect = 6.23e-226
Identity = 304/304 (100.00%), Postives = 304/304 (100.00%), Query Frame = 0


Query: 1   MLLNPSAHFSSWDSLDDPTAAATAAAISSYLTGGHVSPLDSPTRAVMEFDSSFWEEQDMP 60
           MLLNPSAHFSSWDSLDDPTAAATAAAISSYLTGGHVSPLDSPTRAVMEFDSSFWEEQDMP
Sbjct: 6   MLLNPSAHFSSWDSLDDPTAAATAAAISSYLTGGHVSPLDSPTRAVMEFDSSFWEEQDMP 65

Query: 61  AAVDAFTCDDFRMYEFKVRSCTRGRSHDWTKCPNAHAGEKARRRDPRKFNYSGTECPALR 120
           AAVDAFTCDDFRMYEFKVRSCTRGRSHDWTKCPNAHAGEKARRRDPRKFNYSGTECPALR
Sbjct: 66  AAVDAFTCDDFRMYEFKVRSCTRGRSHDWTKCPNAHAGEKARRRDPRKFNYSGTECPALR 125

Query: 121 HGCCNKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPAKQSLM 180
           HGCCNKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPAKQSLM
Sbjct: 126 HGCCNKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPAKQSLM 185

Query: 181 SPRAAKEIAAAVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMHNLQLDKSKKNPA 240
           SPRAAKEIAAAVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMHNLQLDKSKKNPA
Sbjct: 186 SPRAAKEIAAAVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMHNLQLDKSKKNPA 245

Query: 241 VSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIRPLISA 300
           VSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIRPLISA
Sbjct: 246 VSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIRPLISA 305

Query: 301 GSQS 304
           GSQS
Sbjct: 306 GSQS 309

[Close]

BLAST of Cp4.1LG07g06240 vs. NCBI nr
Match: KAG6585728.1 (Zinc finger CCCH domain-containing protein 20, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 605 bits (1559), Expect = 6.12e-218
Identity = 297/308 (96.43%), Postives = 299/308 (97.08%), Query Frame = 0


Query: 1   MLLNPSAHFSSWDSLDDPTAAATAAAISSYLTGGHVSPLDSPTRAVMEFDSSFWEEQDMP 60
           MLLNPSAHFSSWDSLDDPTAAATAAAISSYLT GHVSPLDSPTRAVMEFDSSFWEEQD+P
Sbjct: 6   MLLNPSAHFSSWDSLDDPTAAATAAAISSYLTAGHVSPLDSPTRAVMEFDSSFWEEQDLP 65

Query: 61  AAVDAFTCDDFRMYEFKVRSCTRGRSHDWTKCPNAHAGEKARRRDPRKFNYSGTECPALR 120
           AAVDAFTCDDFRMYEFKVRSC RGRSHDWTKCP AH GEKARRRDPRKF+YSGTECPALR
Sbjct: 66  AAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRKFSYSGTECPALR 125

Query: 121 HGCCNKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPAKQSLM 180
           HGCC KGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPAKQSLM
Sbjct: 126 HGCCKKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPAKQSLM 185

Query: 181 SPRAAKEIAAAVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMHNLQLDKSKKNPA 240
           SPRAAKEIAAAVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMHNLQLDKSKKNPA
Sbjct: 186 SPRAAKEIAAAVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMHNLQLDKSKKNPA 245

Query: 241 VSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIRP---- 300
           VSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIRP    
Sbjct: 246 VSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIRPRIRP 305

Query: 301 LISAGSQS 304
           LISAGSQS
Sbjct: 306 LISAGSQS 313

[Close]

BLAST of Cp4.1LG07g06240 vs. NCBI nr
Match: XP_022951066.1 (zinc finger CCCH domain-containing protein 20-like [Cucurbita moschata])

HSP 1 Score: 598 bits (1542), Expect = 1.77e-215
Identity = 292/304 (96.05%), Postives = 295/304 (97.04%), Query Frame = 0


Query: 1   MLLNPSAHFSSWDSLDDPTAAATAAAISSYLTGGHVSPLDSPTRAVMEFDSSFWEEQDMP 60
           MLLNPSAHFSSWDSLDDPTAAA    ISSYLT GHVSPLDSPTRAVMEFDSSFWEEQ++P
Sbjct: 6   MLLNPSAHFSSWDSLDDPTAAA----ISSYLTAGHVSPLDSPTRAVMEFDSSFWEEQELP 65

Query: 61  AAVDAFTCDDFRMYEFKVRSCTRGRSHDWTKCPNAHAGEKARRRDPRKFNYSGTECPALR 120
           AAVDAFTCDDFRMYEFKVRSC RGRSHDWTKCP AH GEKARRRDPRKFNYSGTECPALR
Sbjct: 66  AAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRKFNYSGTECPALR 125

Query: 121 HGCCNKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPAKQSLM 180
           HGCC KGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPAKQSLM
Sbjct: 126 HGCCKKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPAKQSLM 185

Query: 181 SPRAAKEIAAAVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMHNLQLDKSKKNPA 240
           SPRAAKEIA+AVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMHNLQLDKSKKNPA
Sbjct: 186 SPRAAKEIASAVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMHNLQLDKSKKNPA 245

Query: 241 VSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIRPLISA 300
           VSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIRPLISA
Sbjct: 246 VSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIRPLISA 305

Query: 301 GSQS 304
           GSQS
Sbjct: 306 GSQS 305

[Close]

BLAST of Cp4.1LG07g06240 vs. NCBI nr
Match: XP_023002826.1 (zinc finger CCCH domain-containing protein 20-like [Cucurbita maxima])

HSP 1 Score: 593 bits (1528), Expect = 2.70e-213
Identity = 292/304 (96.05%), Postives = 293/304 (96.38%), Query Frame = 0


Query: 1   MLLNPSAHFSSWDSLDDPTAAATAAAISSYLTGGHVSPLDSPTRAVMEFDSSFWEEQDMP 60
           MLLNP AHFSSWDSLDDPT AA AAAISSYLT GHVSPLDSPTRAVMEFDSSFWEEQD+P
Sbjct: 6   MLLNPLAHFSSWDSLDDPTVAA-AAAISSYLTSGHVSPLDSPTRAVMEFDSSFWEEQDLP 65

Query: 61  AAVDAFTCDDFRMYEFKVRSCTRGRSHDWTKCPNAHAGEKARRRDPRKFNYSGTECPALR 120
           AAVDAFTCDDFRMYEFKVRSC RGRSHDWTKCP AHAGEKARRRDPRKFNYSGTECPALR
Sbjct: 66  AAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHAGEKARRRDPRKFNYSGTECPALR 125

Query: 121 HGCCNKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPAKQSLM 180
           HGCC KGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPAKQSLM
Sbjct: 126 HGCCKKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPAKQSLM 185

Query: 181 SPRAAKEIAAAVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMHNLQLDKSKKNPA 240
           SPRA KEI AAVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMHNLQLDKSKK PA
Sbjct: 186 SPRAGKEIDAAVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMHNLQLDKSKKIPA 245

Query: 241 VSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIRPLISA 300
           VSGF SSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIRPLISA
Sbjct: 246 VSGFVSSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIRPLISA 305

Query: 301 GSQS 304
           GSQS
Sbjct: 306 GSQS 308

[Close]

BLAST of Cp4.1LG07g06240 vs. NCBI nr
Match: KAG7020635.1 (Zinc finger CCCH domain-containing protein 20, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 546 bits (1408), Expect = 2.01e-195
Identity = 263/270 (97.41%), Postives = 265/270 (98.15%), Query Frame = 0


Query: 35  HVSPLDSPTRAVMEFDSSFWEEQDMPAAVDAFTCDDFRMYEFKVRSCTRGRSHDWTKCPN 94
           HVSPLDSPTRAVMEFDSSFWEEQD+PAAVDAFTCDDFRMYEFKVRSC RGRSHDWTKCP 
Sbjct: 13  HVSPLDSPTRAVMEFDSSFWEEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPY 72

Query: 95  AHAGEKARRRDPRKFNYSGTECPALRHGCCNKGDACEFAHGTFEIWLHPDRYRTQPCRDG 154
           AH GEKARRRDPRKF+YSGTECPALRHGCC KGDACEFAHGTFE WLHPDRYRTQPCRDG
Sbjct: 73  AHVGEKARRRDPRKFSYSGTECPALRHGCCKKGDACEFAHGTFESWLHPDRYRTQPCRDG 132

Query: 155 IACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIAAAVTSPTSILISPDSPPMSPISPVT 214
           IACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIAAAVTSPTSILISPDSPPMSPISPVT
Sbjct: 133 IACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIAAAVTSPTSILISPDSPPMSPISPVT 192

Query: 215 TGGESFSRLVPLMHNLQLDKSKKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESG 274
           TGGESFSRLVPLMHNLQLDKSKKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESG
Sbjct: 193 TGGESFSRLVPLMHNLQLDKSKKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESG 252

Query: 275 RNLRAQMYAKLMRENSVDRIRPLISAGSQS 304
           RNLRAQMYAKLMRENSVDRIRPLISAGSQS
Sbjct: 253 RNLRAQMYAKLMRENSVDRIRPLISAGSQS 282

[Close]

BLAST of Cp4.1LG07g06240 vs. ExPASy TrEMBL
Match: A0A6J1GGI4 (zinc finger CCCH domain-containing protein 20-like OS=Cucurbita moschata OX=3662 GN=LOC111454027 PE=4 SV=1)

HSP 1 Score: 598 bits (1542), Expect = 8.59e-216
Identity = 292/304 (96.05%), Postives = 295/304 (97.04%), Query Frame = 0


Query: 1   MLLNPSAHFSSWDSLDDPTAAATAAAISSYLTGGHVSPLDSPTRAVMEFDSSFWEEQDMP 60
           MLLNPSAHFSSWDSLDDPTAAA    ISSYLT GHVSPLDSPTRAVMEFDSSFWEEQ++P
Sbjct: 6   MLLNPSAHFSSWDSLDDPTAAA----ISSYLTAGHVSPLDSPTRAVMEFDSSFWEEQELP 65

Query: 61  AAVDAFTCDDFRMYEFKVRSCTRGRSHDWTKCPNAHAGEKARRRDPRKFNYSGTECPALR 120
           AAVDAFTCDDFRMYEFKVRSC RGRSHDWTKCP AH GEKARRRDPRKFNYSGTECPALR
Sbjct: 66  AAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRKFNYSGTECPALR 125

Query: 121 HGCCNKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPAKQSLM 180
           HGCC KGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPAKQSLM
Sbjct: 126 HGCCKKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPAKQSLM 185

Query: 181 SPRAAKEIAAAVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMHNLQLDKSKKNPA 240
           SPRAAKEIA+AVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMHNLQLDKSKKNPA
Sbjct: 186 SPRAAKEIASAVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMHNLQLDKSKKNPA 245

Query: 241 VSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIRPLISA 300
           VSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIRPLISA
Sbjct: 246 VSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIRPLISA 305

Query: 301 GSQS 304
           GSQS
Sbjct: 306 GSQS 305

[Close]

BLAST of Cp4.1LG07g06240 vs. ExPASy TrEMBL
Match: A0A6J1KMD9 (zinc finger CCCH domain-containing protein 20-like OS=Cucurbita maxima OX=3661 GN=LOC111496573 PE=4 SV=1)

HSP 1 Score: 593 bits (1528), Expect = 1.31e-213
Identity = 292/304 (96.05%), Postives = 293/304 (96.38%), Query Frame = 0


Query: 1   MLLNPSAHFSSWDSLDDPTAAATAAAISSYLTGGHVSPLDSPTRAVMEFDSSFWEEQDMP 60
           MLLNP AHFSSWDSLDDPT AA AAAISSYLT GHVSPLDSPTRAVMEFDSSFWEEQD+P
Sbjct: 6   MLLNPLAHFSSWDSLDDPTVAA-AAAISSYLTSGHVSPLDSPTRAVMEFDSSFWEEQDLP 65

Query: 61  AAVDAFTCDDFRMYEFKVRSCTRGRSHDWTKCPNAHAGEKARRRDPRKFNYSGTECPALR 120
           AAVDAFTCDDFRMYEFKVRSC RGRSHDWTKCP AHAGEKARRRDPRKFNYSGTECPALR
Sbjct: 66  AAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHAGEKARRRDPRKFNYSGTECPALR 125

Query: 121 HGCCNKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPAKQSLM 180
           HGCC KGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPAKQSLM
Sbjct: 126 HGCCKKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPAKQSLM 185

Query: 181 SPRAAKEIAAAVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMHNLQLDKSKKNPA 240
           SPRA KEI AAVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMHNLQLDKSKK PA
Sbjct: 186 SPRAGKEIDAAVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMHNLQLDKSKKIPA 245

Query: 241 VSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIRPLISA 300
           VSGF SSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIRPLISA
Sbjct: 246 VSGFVSSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIRPLISA 305

Query: 301 GSQS 304
           GSQS
Sbjct: 306 GSQS 308

[Close]

BLAST of Cp4.1LG07g06240 vs. ExPASy TrEMBL
Match: A0A5A7V5C0 (Zinc finger CCCH domain-containing protein 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G001160 PE=4 SV=1)

HSP 1 Score: 496 bits (1277), Expect = 2.14e-175
Identity = 240/306 (78.43%), Postives = 262/306 (85.62%), Query Frame = 0


Query: 1   MLLNPSAHFSSWDSLDDPTAAATAAAISSYLTGGHVSPLDSPTRAVMEFDSSFWEEQDMP 60
           MLLNP+AH S+WDSLDDP+AA     ISSY + GHVSPLDSPT A+M+FDSS WE+ D+P
Sbjct: 6   MLLNPTAHISTWDSLDDPSAA-----ISSYFSAGHVSPLDSPTAALMDFDSSLWEDPDLP 65

Query: 61  AAVDAFTCDDFRMYEFKVRSCTRGRSHDWTKCPNAHAGEKARRRDPRKFNYSGTECPALR 120
           A VD F+CD FRMYEFKVRSC RGRSHDWTKCP AH GEKARRRDPRKFNYSG ECP LR
Sbjct: 66  APVDGFSCDQFRMYEFKVRSCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLR 125

Query: 121 HGCCNKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPAKQSLM 180
           HGCC KGDACE+AHGTFEIWLHPDRYRTQPCRDG  CRRRVCFFAHT EQLRIP KQS+ 
Sbjct: 126 HGCCKKGDACEYAHGTFEIWLHPDRYRTQPCRDGTGCRRRVCFFAHTSEQLRIPGKQSVR 185

Query: 181 SPRAAKEIAAAVTSPTSILISP--DSPPMSPISPVTTGGESFSRLVPLMHNLQLDKSKKN 240
           SPRA +    AV+SPTSIL+SP  DSPP+SPISPV +GGESFSRLV LMH+L+LD+ K N
Sbjct: 186 SPRAREIAVPAVSSPTSILLSPSSDSPPLSPISPVISGGESFSRLVALMHSLRLDELKTN 245

Query: 241 PAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIRPLI 300
           P VS F  + RRNSG FDLWDR  EEEPAMERVESGRNLRAQMYAKLMRENSVDR+RPLI
Sbjct: 246 PGVSSFSPNLRRNSGAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPLI 305

Query: 301 SAGSQS 304
           SAGSQ+
Sbjct: 306 SAGSQN 306

[Close]

BLAST of Cp4.1LG07g06240 vs. ExPASy TrEMBL
Match: A0A1S3BBA7 (LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 20 OS=Cucumis melo OX=3656 GN=LOC103487803 PE=4 SV=1)

HSP 1 Score: 493 bits (1270), Expect = 2.49e-174
Identity = 239/306 (78.10%), Postives = 261/306 (85.29%), Query Frame = 0


Query: 1   MLLNPSAHFSSWDSLDDPTAAATAAAISSYLTGGHVSPLDSPTRAVMEFDSSFWEEQDMP 60
           MLLNP+AH S+WDSLDDP+AA     ISSY + GHVSPLDSPT A+M+FDSS WE+ D+P
Sbjct: 6   MLLNPTAHISTWDSLDDPSAA-----ISSYFSAGHVSPLDSPTAALMDFDSSLWEDPDLP 65

Query: 61  AAVDAFTCDDFRMYEFKVRSCTRGRSHDWTKCPNAHAGEKARRRDPRKFNYSGTECPALR 120
           A VD F+CD FRMYEFKVRSC RGRSHDWTKCP AH GEKARRRDPRKFNYSG ECP LR
Sbjct: 66  APVDGFSCDQFRMYEFKVRSCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLR 125

Query: 121 HGCCNKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPAKQSLM 180
           HGCC KGDACE+AHGTFEIWLHPDRYRTQPCRDG  CRRRVCFFAHT EQLRIP KQS+ 
Sbjct: 126 HGCCKKGDACEYAHGTFEIWLHPDRYRTQPCRDGTGCRRRVCFFAHTSEQLRIPGKQSVR 185

Query: 181 SPRAAKEIAAAVTSPTSILISP--DSPPMSPISPVTTGGESFSRLVPLMHNLQLDKSKKN 240
           SPRA +    AV+SPTSIL+SP  DSPP+SPISPV +GGES SRLV LMH+L+LD+ K N
Sbjct: 186 SPRAREIAVPAVSSPTSILLSPSSDSPPLSPISPVISGGESSSRLVALMHSLRLDEXKTN 245

Query: 241 PAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIRPLI 300
           P VS F  + RRNSG FDLWDR  EEEPAMERVESGRNLRAQMYAKLMRENSVDR+RPLI
Sbjct: 246 PGVSSFSPNLRRNSGAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPLI 305

Query: 301 SAGSQS 304
           SAGSQ+
Sbjct: 306 SAGSQN 306

[Close]

BLAST of Cp4.1LG07g06240 vs. ExPASy TrEMBL
Match: A0A6J1K790 (zinc finger CCCH domain-containing protein 20-like OS=Cucurbita maxima OX=3661 GN=LOC111492294 PE=4 SV=1)

HSP 1 Score: 490 bits (1261), Expect = 5.85e-173
Identity = 239/306 (78.10%), Postives = 259/306 (84.64%), Query Frame = 0


Query: 1   MLLNPSAHFSSWDSLDDPTAAATAAAISSYLTGGHVSPLDSPTRAVMEFDSSFWEEQDMP 60
           M LNP+ H SSWDSLDDP     AAAI SY T G+VSPLDSPT AVM++DSSFWE+QD+P
Sbjct: 6   MFLNPTPHISSWDSLDDP-----AAAIPSYFTAGNVSPLDSPTAAVMDYDSSFWEDQDLP 65

Query: 61  AAVDAFTCDDFRMYEFKVRSCTRGRSHDWTKCPNAHAGEKARRRDPRKFNYSGTECPALR 120
           A VDAFTCD FRMYEFKVR+C RGRSHDWTKCP AHAGEKARRRDPRKFNYSGTECP LR
Sbjct: 66  AIVDAFTCDHFRMYEFKVRACARGRSHDWTKCPYAHAGEKARRRDPRKFNYSGTECPDLR 125

Query: 121 HGCCNKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPAKQSLM 180
           HGCC KGDACE+AHG FEIWLHPDRYRTQPCRDG  CRRRVCFFAH+ EQLRIP KQS+ 
Sbjct: 126 HGCCMKGDACEYAHGVFEIWLHPDRYRTQPCRDGAVCRRRVCFFAHSSEQLRIPGKQSIR 185

Query: 181 SPRAAKEIAAAVTSPTSILISP--DSPPMSPISPVTTGGESFSRLVPLMHNLQLDKSKKN 240
           SPR  +  A AV+SPTSILIS   DSPPMSPISP+ TGGESFSRLV LMHNL  D+ K N
Sbjct: 186 SPRGREIAAPAVSSPTSILISSSSDSPPMSPISPLATGGESFSRLVALMHNLHFDELKTN 245

Query: 241 PAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIRPLI 300
           P +SGF  S RRNSG FD WDR  EEEPAMERVESGRNLRAQMYAKLMR+NSV+R+RPLI
Sbjct: 246 PGISGFGPSFRRNSGAFDSWDRDNEEEPAMERVESGRNLRAQMYAKLMRDNSVERVRPLI 305

Query: 301 SAGSQS 304
            AGS++
Sbjct: 306 LAGSRN 306

[Close]

BLAST of Cp4.1LG07g06240 vs. TAIR 10
Match: AT2G19810.1 (CCCH-type zinc finger family protein )

HSP 1 Score: 254.6 bits (649), Expect = 1.0e-67
Identity = 148/341 (43.40%), Postives = 183/341 (53.67%), Query Frame = 0


Query: 4   NPSAHFSSWDSLDDPTAA-------------ATAAAISSYLTGGHVSPLDSPTRAVMEFD 63
           NP+ H   W   +D T +                A +  YL      P   P  +     
Sbjct: 11  NPTVHIPPWPLSEDLTVSDIYGSPDGGSSMMEALAELQRYLPSNEPDPDSDPDLS----- 70

Query: 64  SSFWEEQDMPAAVDAFTCDDFRMYEFKVRSCTRGRSHDWTKCPNAHAGEKARRRDPRKFN 123
                  D P  +DA+TCD FRMYEFKVR C RGRSHDWT+CP AH GEKARRRDPRKF+
Sbjct: 71  -----GPDSP--IDAYTCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFH 130

Query: 124 YSGTECPALRHGCCNKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQ 183
           YSGT CP  R GCC +GDACEF+HG FE WLHP RYRTQPC+DG  CRRRVCFFAH+ +Q
Sbjct: 131 YSGTACPEFRKGCCKRGDACEFSHGVFECWLHPARYRTQPCKDGGNCRRRVCFFAHSPDQ 190

Query: 184 LRIPAKQSLMSPRAAKEIAAAVTSPTSILISP--DSPPMSPISPVTTGGESFSR------ 243
           +R+   QS     +   ++  +       ISP  +SPP+SP     +     SR      
Sbjct: 191 IRVLPNQSPDRVDSFDVLSPTIRRAFQFSISPSSNSPPVSPRGDSDSSCSLLSRSLGSNL 250

Query: 244 ---LVPLMHNLQLDKSKK------NPAVSGFDS---SPR---------------RNSGGF 297
              +V  + NLQL+K K       N  + G+ S   SPR                  G  
Sbjct: 251 GNDVVASLRNLQLNKVKSSLSSSYNNQIGGYGSGFGSPRGSVLGPGFRSLPTTPTRPGFM 310

[Close]

BLAST of Cp4.1LG07g06240 vs. TAIR 10
Match: AT2G25900.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 248.1 bits (632), Expect = 9.4e-66
Identity = 145/313 (46.33%), Postives = 183/313 (58.47%), Query Frame = 0


Query: 4   NPSAHFSSWDSLDDPTAAATAAAISSYLTGGHVSP------LDS--------PTRAVMEF 63
           +P+ H   WD ++DPTA  ++   S  L   +  P      LDS        P+  +   
Sbjct: 11  HPTIHIPQWDQINDPTATISSPFSSVNLNSVNDYPHSPSPYLDSFASLFRYLPSNELTND 70

Query: 64  DSSFWEEQDMPAAVDAFTCDDFRMYEFKVRSCTRGRSHDWTKCPNAHAGEKARRRDPRKF 123
             S   ++  P   D+F+ D+FR+YEFK+R C RGRSHDWT+CP AH GEKARRRDPRKF
Sbjct: 71  SDSSSGDESSP-LTDSFSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKF 130

Query: 124 NYSGTECPALRHGCCNKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLE 183
           +YSGT CP  R G C +GD+CEF+HG FE WLHP RYRTQPC+DG +CRRR+CFFAHT E
Sbjct: 131 HYSGTACPEFRKGSCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTTE 190

Query: 184 QLRIPAKQSLMSPRAAKEIAAAVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMHN 243
           QLR+      + P      +   TSPTSIL+SP   P S   P++    S   L+  M  
Sbjct: 191 QLRV--LPCSLDPDLG-FFSGLATSPTSILVSPSFSPPSESPPLS---PSTGELIASMRK 250

Query: 244 LQLDK---SKKNPAVSG----FDSSPRRNSGGFDLWDR----TFEEEPAMERVESGRNLR 292
           +QL+    S  +P  S     F SS R        W R      EE PAME VESG+ LR
Sbjct: 251 MQLNGGGCSWSSPMRSAVRLPFSSSLRPIQAA--TWPRIREFEIEEAPAMEFVESGKELR 310

[Close]

BLAST of Cp4.1LG07g06240 vs. TAIR 10
Match: AT2G25900.2 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 248.1 bits (632), Expect = 9.4e-66
Identity = 145/313 (46.33%), Postives = 183/313 (58.47%), Query Frame = 0


Query: 4   NPSAHFSSWDSLDDPTAAATAAAISSYLTGGHVSP------LDS--------PTRAVMEF 63
           +P+ H   WD ++DPTA  ++   S  L   +  P      LDS        P+  +   
Sbjct: 11  HPTIHIPQWDQINDPTATISSPFSSVNLNSVNDYPHSPSPYLDSFASLFRYLPSNELTND 70

Query: 64  DSSFWEEQDMPAAVDAFTCDDFRMYEFKVRSCTRGRSHDWTKCPNAHAGEKARRRDPRKF 123
             S   ++  P   D+F+ D+FR+YEFK+R C RGRSHDWT+CP AH GEKARRRDPRKF
Sbjct: 71  SDSSSGDESSP-LTDSFSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKF 130

Query: 124 NYSGTECPALRHGCCNKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLE 183
           +YSGT CP  R G C +GD+CEF+HG FE WLHP RYRTQPC+DG +CRRR+CFFAHT E
Sbjct: 131 HYSGTACPEFRKGSCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTTE 190

Query: 184 QLRIPAKQSLMSPRAAKEIAAAVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMHN 243
           QLR+      + P      +   TSPTSIL+SP   P S   P++    S   L+  M  
Sbjct: 191 QLRV--LPCSLDPDLG-FFSGLATSPTSILVSPSFSPPSESPPLS---PSTGELIASMRK 250

Query: 244 LQLDK---SKKNPAVSG----FDSSPRRNSGGFDLWDR----TFEEEPAMERVESGRNLR 292
           +QL+    S  +P  S     F SS R        W R      EE PAME VESG+ LR
Sbjct: 251 MQLNGGGCSWSSPMRSAVRLPFSSSLRPIQAA--TWPRIREFEIEEAPAMEFVESGKELR 310

[Close]

BLAST of Cp4.1LG07g06240 vs. TAIR 10
Match: AT4G29190.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 235.3 bits (599), Expect = 6.3e-62
Identity = 132/269 (49.07%), Postives = 161/269 (59.85%), Query Frame = 0


Query: 63  VDAFTCDDFRMYEFKVRSCTRGRSHDWTKCPNAHAGEKARRRDPRKFNYSGTECPALRHG 122
           +DA++CD FRMY+FKVR C RGRSHDWT+CP AH GEKARRRDPRK++YSGT CP  R G
Sbjct: 72  IDAYSCDHFRMYDFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKG 131

Query: 123 CCNKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPAKQS---- 182
            C KGD+CEFAHG FE WLHP RYRTQPC+DG  C R++CFFAH+ +QLR    +S    
Sbjct: 132 GCKKGDSCEFAHGVFECWLHPARYRTQPCKDGGNCLRKICFFAHSPDQLRFLHTRSPDRV 191

Query: 183 ----LMSPRAAKEIAAAVTSPTSILISPDSPPMSP-----ISPVT------TGGESFSRL 242
               + SP  A+    ++ SP S      SPPMSP      SP+T       G  S + +
Sbjct: 192 DSFDVSSPIRARAFQLSI-SPVS-----GSPPMSPRADSESSPMTQSLSRSLGSCSINDV 251

Query: 243 VPLMHNLQLDKSKKNPAVS---------------GFDSSPR--RNSGGFDLWDRTFEEEP 295
           VP   NLQ +  K  P  +               GF S P      G  D+W+   EEEP
Sbjct: 252 VPSFRNLQFNSVKSFPRNNPLFGFGSPRGSILGPGFQSLPTTPTRPGNLDIWEYGLEEEP 311

[Close]

BLAST of Cp4.1LG07g06240 vs. TAIR 10
Match: AT2G41900.1 (CCCH-type zinc finger protein with ARM repeat domain )

HSP 1 Score: 180.6 bits (457), Expect = 1.8e-45
Identity = 102/225 (45.33%), Postives = 132/225 (58.67%), Query Frame = 0


Query: 34  GHVSPLDSPTR-AVMEFDSSFWEEQDMPAAVDA-FTCDDFRMYEFKVRSCTRGRSHDWTK 93
           G  SPL SP +    EF   +  +  +P   ++ +  D+FRMY FKVR C+R  SHDWT+
Sbjct: 223 GSGSPLGSPFKLKSTEFKKEYPVDPSLPDIKNSIYATDEFRMYSFKVRPCSRAYSHDWTE 282

Query: 94  CPNAHAGEKARRRDPRKFNYSGTECPALRHGCCNKGDACEFAHGTFEIWLHPDRYRTQPC 153
           CP  H GE ARRRDPRKF+YS   CP  R G C +GD CE+AHG FE WLHP +YRT+ C
Sbjct: 283 CPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLC 342

Query: 154 RDGIACRRRVCFFAHTLEQLR---IPAKQSLMSPRAAKEIAAAVTSPTSILISPDSPP-- 213
           +DG  C RRVCFFAHT E+LR        ++ SPR+  + AAA++      + P SP   
Sbjct: 343 KDGTGCARRVCFFAHTPEELRPLYASTGSAVPSPRSNADYAAALS------LLPGSPSGV 402

Query: 214 --MSPISPVTTG-GESFSRL------VPLMH----NLQLDKSKKN 239
             MSP+SP   G G S S +      VP +H    NLQ  + + +
Sbjct: 403 SVMSPLSPSAAGNGMSHSNMAWPQPNVPALHLPGSNLQSSRLRSS 441

The following BLAST results are available for this feature:

BLAST of Cp4.1LG07g06240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82199	1.4e-66	43.40	Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN...	[more]
O82307	1.3e-64	46.33	Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9M0G2	8.9e-61	49.07	Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9FU27	1.6e-57	43.56	Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica OX=...	[more]
Q6L4N4	1.2e-54	41.52	Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica OX...	[more]

BLAST of Cp4.1LG07g06240 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023537964.1	6.23e-226	100.00	zinc finger CCCH domain-containing protein 20-like [Cucurbita pepo subsp. pepo]	[more]
KAG6585728.1	6.12e-218	96.43	Zinc finger CCCH domain-containing protein 20, partial [Cucurbita argyrosperma s...	[more]
XP_022951066.1	1.77e-215	96.05	zinc finger CCCH domain-containing protein 20-like [Cucurbita moschata]	[more]
XP_023002826.1	2.70e-213	96.05	zinc finger CCCH domain-containing protein 20-like [Cucurbita maxima]	[more]
KAG7020635.1	2.01e-195	97.41	Zinc finger CCCH domain-containing protein 20, partial [Cucurbita argyrosperma s...	[more]

BLAST of Cp4.1LG07g06240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GGI4	8.59e-216	96.05	zinc finger CCCH domain-containing protein 20-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1KMD9	1.31e-213	96.05	zinc finger CCCH domain-containing protein 20-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A5A7V5C0	2.14e-175	78.43	Zinc finger CCCH domain-containing protein 20 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3BBA7	2.49e-174	78.10	LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 20 OS=Cucumis me...	[more]
A0A6J1K790	5.85e-173	78.10	zinc finger CCCH domain-containing protein 20-like OS=Cucurbita maxima OX=3661 G...	[more]

BLAST of Cp4.1LG07g06240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G19810.1	1.0e-67	43.40	CCCH-type zinc finger family protein	[more]
AT2G25900.1	9.4e-66	46.33	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT2G25900.2	9.4e-66	46.33	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT4G29190.1	6.3e-62	49.07	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT2G41900.1	1.8e-45	45.33	CCCH-type zinc finger protein with ARM repeat domain	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 145..168 e-value: 9.0 score: 8.6 coord: 110..136 e-value: 0.11 score: 21.7
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 110..137 score: 11.337903
None	No IPR available	GENE3D	4.10.1000.10		coord: 107..179 e-value: 1.2E-6 score: 30.3
None	No IPR available	PANTHER	PTHR14493:SF116	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20	coord: 249..300
None	No IPR available	PANTHER	PTHR14493:SF116	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20	coord: 5..243
None	No IPR available	PANTHER	PTHR14493	UNKEMPT FAMILY MEMBER	coord: 249..300 coord: 5..243

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG07g06240.1	Cp4.1LG07g06240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0061157	mRNA destabilization
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003727	single-stranded RNA binding