Cp4.1LG07g04010 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG07g04010
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	ribosomal RNA small subunit methyltransferase I
Location	Cp4.1LG07: 2567901 .. 2573566 (-)
RNA-Seq Expression	Cp4.1LG07g04010
Synteny	Cp4.1LG07g04010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCTTGGATTTGGCGGTTCTTCGGAGATAGTGAAATCTTCGGTCTTCGTTGTGTAATCTTGTACTCTTCCTTCCTACCACCGTCGCCCCCAATTCAATTCAGTTCGGCCTGCTTCCGCCGTAGAGCGACGGAGAGAAGCTGATGTTGACGCGTAGAATTCCTTCCGTGGCAGTTTATCTCCCGCAAGCTCTGCCATGGCGTCGTGGGCCACCTCATTCAATCAAAGCCAGGACGCCGCTTGAATTCCACTCATTGCTCTCTTTTTGCCCTAAAACTTGTTTACTTTCGTTTTGTTCTGCTTCTCAGTTCTCCTCCGAAGTTGCTGAACCAACTCATATGGATGATTCCTCGAAGCGTGTAAGATCACGAACCAATCCCTTCCTTATATCTTTTTCTATATGGCCATTGTTAATCATGCAAAACCTAGAGCTTAATTCCTGTTATTTATTTGCTTAACTCTTTCCTTGTGGCTAGAATGAACATAGAATGAACCGCAAAAGCTCAATGTGTGTTAATGGTATGTTTAATCTTTATATATATTCTTAACAGTAATGTTTTGCCTCTCCATGTTGATACTTGCATTGGATTCAACTACAAAACTTACTATATCTGTCTCATTTTGTACTGGATTGTATACAAGTTATTGTAACTTCTTAAGTCCTTTAATGAAAATATAGATATATTCTGTCCGTTTTCTTGGTTTAGGATTTCTACGTAGTTTTGTAATGTTTGACAGGTATCCTTGTCCTTGCAGGGTCCCCTGAAACCTGGGTTATATATCGTTAGCACACCAATTGGTAATCTTGAAGATATCACCTTACGGTATGAAATTTTGATAGCAAGCCCCAACATTAATGTTGTGAGATCCCATATCGGTTGGAGAGGGGAACGAAGCATTCCTTATAAGGGTATGGAAACCTCTCCCTAGTAGACGCGTTTTAAAACCGTAAGGTTGATGACGATACGTAACAGGCCAAAGTGTACAATATCTGTTAGCGATGAGCTTGAGCTGTTATAAATGGTATTAAAGCCAGACACCGAGCAGTGTGCCAGCGAGGATGCTAGGCCCTCAAGGAGGGTGGATTGTGAGATCCCACATCGGTTGGAAAGGGGAACGAAACATTCCTTGTAAGGGTGTGGAAACCTTTCCCTAGTAGACGTGTTTTGAAATCATGAGGCTGACGACGATACGTATCAGGCCAAAGCGGACAAAATTTGCTACTTTCTTTTCAGCATATGTATGTATACACTGAAAGTTTGGCAACCAACACGAATATATATATTTTTTTCTTTCAAAATGATATGTACACAAATAAACGCATAATTTGGAAAATGGACTTTATGTCTTGTGATATTTCTAACTGAGTCACTACCTTAAGTAGGATGTTAATTTCTATGTTTCAAGATTTTCGCCTTTATATTGGTCCTTATTTCAATTGTTCAGTTGTTTTGAATAATCAGTCTCTTTATCCCCTTAAAACTCTATTATACAGTGCTCTACGTGTCTTAAAATCAGCAAACGTCATTCTTTCGGAGGATACAAGGCACTCAGGAAAGTTGCTTCAACATTTCAGTATTAAAACCCCTCTTGTAAGTTTGTTGATGCGTTTGTTTGCTAATATATCAGGTTTCTTTTCGTTCTCCATTTGTTCTGATGAAGACTTTTAGATTTCAGTTGAGTTTTCACAAATTCAATGAGTCTCAAAGGGAGCAAACAGTGTTGAAGAGGTTAAAAGAGGGTGAAATTGTTGCACTAATTAGTGATGCGGGGACGCCAGGCATTAGTGATCCTGGTACTGAGTTGGTGAGCATGCTCGTTCTTCCTTAATATTTTAATGATTTAATTATGAATGGTGGTATTTATATAATTGTACCATGTGAATACAGGTAAGACAATGTGTCAATGCAAGCATACCCGTTGTTCCTATTCCTGGACCCTCTGCTGTCATTGCTGCTCTTTCTGCCTCTGGCTTGTCGACCGATGAATTTACCTTTGGTAAAATTTGTACCGGTTCTTGTACTTGTGCTGTGAGGGCATCTTTGTTTGAGGTCTTTTGGCCCTATGGCTATGGCTTCCTTATAAGTATATTTGTGCAGTTGGATTTGTTCCTAAGCATGCTTCATCTAGAAGAGAGAGGCTGATGGTTTCAGCAAATGAGGAGGCGACGCAAATATTCTATGTTCCTCCGCACAAAGTTAAGCAGTTTCTCGAGGAAACTTCATCATTATTTGGTGAATCAAGGTACTTTATATATGTCTATCTGCAATGTGTTGACTTATATGTAATAGTCCAAGCCCACTGGTAGCAGATATTGTTCTCTTTGAGCTTTCCCTTTCGGGCTTCCCCTCAAGATTTTTAAAACGTGTCTGTTAGGGAGAGGTTTCCACACACCCTTATAAAGAATGTTTCGTTCCCCTCTCCAACTGATGTGGGATCTCCCAATCCCACCTCCCTTCGGGGCCCAGCGTCTTCACTGGCACTCATTCCTCTCTCCAATCAATGTGGGATCTTACATTATATTTCTTCCAATGTATCAGTGCATTTCCACCACTATCTGCTTCTATCTGTATCATCATTCATTTACTGATGACATCTGATTTGGAATATTTGAAGGAACAGATTGTATTAAGATGCTTCGCTAATCGTGATCATCTTAAAGCAATCATTTCATTTCTTGTAACAGATAGTCTAAACTCATATTATGATCCAAATTACTTTACTGAACAAGCAGACTTGTCTTCTGTTTGTAGATGGTTTCATCAATGCCAACTTGATGAATATTTTTGTTTCCGAGCTGTTTTGCAGGCAATGCGTCATAGCTCGTGAAATGACCAAGATACACGAGGAGGTAACTTTATTCCTCACCATGTTTTTTTGTATCTTTATTTGGTAGAGTTCGCAATACTTATGCGTACTGCAGACCACTTCTTTGTTTCTTCTACACACTGTTACTTATTTACCTGTATAATGACATTCTACCAATTTCCTCTGTGCTCTATTGAGTTCCTTGGTTGCAACAGTTTTGGCGGGGTACCCTGGCGGAAGCTAAAGAATACTTCTCGTTGCACCAAACGAAGGGTGAAATTACGCTGCTGATCGAAGGAAAGCTCAATTCTGAAGTCGAAACTCCATCGGAATCACAGCTGGAAAAGGAGTTGGAAGAATTGATCTCCAGTGGGCATAAGCTTTCTATGGTAATGGCTTGAATTGGACTATAGGATAAAGATAAAGATAAAGAATACTTCAAGCTTTACTCTGAGATGATCTCCATGCGCTTATTATCATGTTATTGAATGGGACCGATATCAGTTGGCAACGACCGAAATGAATAGTTTGTTCAAATTCAAAGACTAAATAGGCATTTTGAATGTTTAGCAAATAAATTAAAACGAGTCTTGAAAGTTTAGAGATGCAAATAGTGGTTGAACCAATATTGTATACCTTGAATGCTAACAAACTTATTTTCTTTTTTTCATGAAGGCTGTCAAATTGGTCGCTATCAAAACGTCAGCTAGTAGGAAAACTGTCTATTCAATTGCATTACGAAGATTCGGGAATCAGCTTGGAGCGGAGAACGATTCGTGCAAATAATGTCTCTGTAGCATGCTTGCTAGAGGTGTAAGTGGTTAATTGCTCATATTGATTTCTCTGGGGTACCATCTGAAGAACAACTTGCCTTTCCATATTCTTCATTAGCAGCTGTTGCGTCTTGTTCTAATCGTTTCATTAGATATTGTTCGGGTCGGTAGGAAAAAGATGTATGATTTGTGTTGGAATATTGGTTCGTCTAGGATACGGACATGGTAGGGACACATTTATTAAAATATATGAAGTGTGACACACGTCTGCTGTTCTAACAAGTGTGTCTAATACCAGAGATGCGCGCTACTAACTTGAGCGCTTACTGATATGAAAAAATACAAGTGAAACATGTTCAACGAGTATCGGAACGTGTGACAAATGGTCAACACAGCTACCTTAACACAACTTTAAGTGTTCATGCATGGTTCTTAGGTGGCTTTCTGGAATCTCATCTGAGATTTCGAAGATGCTATTCTAGTACCAAACTGTCGATGATCAGAAGCCAGAGGCAAGGGACGGGACGGGACGGAGGGAATCCGTTTCAGCAGTGATTATTTGTGCAGCGTTTTGATCTTTTGATCGTGGAGGATCGACCCGTCCATGTTGCTGGAAATCCATCGTCCTTGCGCTCTTCTCAAGAACATTTGATTGATTCTTCTGCCCTTTCTTTCTACTTCACTATATACATTTACTCCTTTCATAATTCATTACAGTATATTTGTATACTGCTGCCTTTCTTGCTGTTTTCTCCTAACAATTCAGGTCTCGATGGATCACCGGGATACCGCCATGTCTACTGACTTGGACGGTGAAAATATCCTCTGCCCAGTGGCTAGAATGTGGTGTGGATCGAACTTCATCTTCCTCCGCTGAAACTCCGGCCACTTATCGCCAAAGTGCTCCGCCCACTCCTCCTCCATCGTGTAGTGAGGCAGGTACTGTTTCACTTCAATCCCCTCATTAGAGCAGAATGCTATTATCTGATGGTTCTGATTGCTCAAATACTCCAACGACTGTGTTTCTTCGCCATTGTCGATCGCCGAGCGCAGCAACGCCACCAGGTAGAAGACATCGTCCTCCGGGGTCACGGCGGAGCTCCTCGGGTCCCATCTACACAACAAAAAAGTGGAACCAACTGTTATCAAGAGAGGTATGGACCCTGGACTTGATAATTCTAAGATGTAGTGAAATAATGTCTCCATTACAACACTGCAAAGTTGAGTACGTCAACTGGGACGATAGTAACATCCCCATCGGACCCCATCGGACCCTATCGGAGGGGTCCAACGGAGAAGATCTCCTGACACCAGAATCTTCTCCCATGGGACAATCACCACCCTCCAAGCTGGCTAAACTTGTATTTTGTGGAATTTTTAAAGAAAATTTACCATTTCTTTTTAAAACCCGAGTCGGCTTTACGGTAAATAAGCTTTTTGAGGTTAGAGATTCAAACAATCGGATGTCGTTTTCAAAGACTTCTTAACCTACAAATGAGAAAGAAAAAAAAAAGGAATAAAAAAGAATAGGGAACATACTTATGCTTGTTCATGGGGTAGATGAGGATGGGTCCACTGGTATTATTTCCCAAAATGCCCTTGAAAACACCTCGATCAAAATCAGCAATTCTCGACTTCGGAACAAAGAGATTCAGCCACGGATGCGGGACATCCCACAGCCCCTTGGATCGGAGCTTCAACTCGGCCGTATGAACCCGGTCGAGAAAGTCCACATAACCTAGGTCTGTTGTGAAAACCGACTCGGGTATGTAGTCGAGTTCCTTCAGCAGCGCCTCAACTTCCTGATTAAACAAAGTAGTTTCGTCAGCTACTACTTTATTTTATTCCAATCACTGTTAACAAGAGAATAATTTGGGAGCTGAAAGGCTGTGGATTTAGTGTTATTATTATCCTTAAAGCTATATTCTTTCTCTGTCTTAGGATTTTATAGAATAATTGATTCCCATAAGATCTTCCATCTATTATTCTTCTTCTTTATTATTATCAAAACATATTTTAAAACAAAATCGTTACCGAACCGAACCAAAACATCGATGAATTATTGAACACGAACAATAAACCACAAG

mRNA sequence

CGCTTGGATTTGGCGGTTCTTCGGAGATAGTGAAATCTTCGGTCTTCGTTGTGTAATCTTGTACTCTTCCTTCCTACCACCGTCGCCCCCAATTCAATTCAGTTCGGCCTGCTTCCGCCGTAGAGCGACGGAGAGAAGCTGATGTTGACGCGTAGAATTCCTTCCGTGGCAGTTTATCTCCCGCAAGCTCTGCCATGGCGTCGTGGGCCACCTCATTCAATCAAAGCCAGGACGCCGCTTGAATTCCACTCATTGCTCTCTTTTTGCCCTAAAACTTGTTTACTTTCGTTTTGTTCTGCTTCTCAGTTCTCCTCCGAAGTTGCTGAACCAACTCATATGGATGATTCCTCGAAGCGTGTATCCTTGTCCTTGCAGGGTCCCCTGAAACCTGGGTTATATATCGTTAGCACACCAATTGTTGTTTTGAATAATCAGTCTCTTTATCCCCTTAAAACTCTATTATACAGTGCTCTACGTGTCTTAAAATCAGCAAACGTCATTCTTTCGGAGGATACAAGGCACTCAGGAAAGTTGCTTCAACATTTCAGTATTAAAACCCCTCTTTTGAGTTTTCACAAATTCAATGAGTCTCAAAGGGAGCAAACAGTGTTGAAGAGGTTAAAAGAGGGTGAAATTGTTGCACTAATTAGTGATGCGGGGACGCCAGGCATTAGTGATCCTGGTACTGAGTTGGTAAGACAATGTGTCAATGCAAGCATACCCGTTGTTCCTATTCCTGGACCCTCTGCTGTCATTGCTGCTCTTTCTGCCTCTGGCTTGTCGACCGATGAATTTACCTTTGATGGTTTCATCAATGCCAACTTGATGAATATTTTTGTTTCCGAGCTGTTTTGCAGGCAATGCGTCATAGCTCGTGAAATGACCAAGATACACGAGGAGTTTTGGCGGGGTACCCTGGCGGAAGCTAAAGAATACTTCTCGTTGCACCAAACGAAGGGTGAAATTACGCTGCTGATCGAAGGAAAGCTCAATTCTGAAGTCGAAACTCCATCGGAATCACAGCTGGAAAAGGAGTTGGAAGAATTGATCTCCAGTGGGCATAAGCTTTCTATGGCTGTCAAATTGGTCGCTATCAAAACGTCAGCTAGTAGGAAAACTGTCTATTCAATTGCATTACGAAGATTCGGGAATCAGCTTGGAGCGGAGAACGATTCGTGCAAATAATGTCTCTGTAGCATGCTTGCTAGAGGTGTAAGTGGTTAATTGCTCATATTGATTTCTCTGGGGTACCATCTGAAGAACAACTTGCCTTTCCATATTCTTCATTAGCAGCTGTTGCGTCTTGTTCTAATCGTTTCATTAGATATTGTTCGGGTCGGTAGGAAAAAGATGTATGATTTGTGTTGGAATATTGGTTCGTCTAGGATACGGACATGGTAGGGACACATTTATTAAAATATATGAAGTGTGACACACGTCTGCTGTTCTAACAAGTGTGTCTAATACCAGAGATGCGCGCTACTAACTTGAGCGCTTACTGATATGAAAAAATACAAGTGAAACATGTTCAACGAGTATCGGAACGTGTGACAAATGGTCAACACAGCTACCTTAACACAACTTTAAGTGTTCATGCATGGTTCTTAGGTGGCTTTCTGGAATCTCATCTGAGATTTCGAAGATGCTATTCTAGTACCAAACTGTCGATGATCAGAAGCCAGAGGCAAGGGACGGGACGGGACGGAGGGAATCCGTTTCAGCAGTGATTATTTGTGCAGCGTTTTGATCTTTTGATCGTGGAGGATCGACCCGTCCATGTTGCTGGAAATCCATCGTCCTTGCGCTCTTCTCAAGAACATTTGATTGATTCTTCTGCCCTTTCTTTCTACTTCACTATATACATTTACTCCTTTCATAATTCATTACAGTATATTTGTATACTGCTGCCTTTCTTGCTGTTTTCTCCTAACAATTCAGGTCTCGATGGATCACCGGGATACCGCCATGTCTACTGACTTGGACGGTGAAAATATCCTCTGCCCAGTGGCTAGAATGTGGTGTGGATCGAACTTCATCTTCCTCCGCTGAAACTCCGGCCACTTATCGCCAAAGTGCTCCGCCCACTCCTCCTCCATCGTGTAGTGAGGCAGGTACTGTTTCACTTCAATCCCCTCATTAGAGCAGAATGCTATTATCTGATGGTTCTGATTGCTCAAATACTCCAACGACTGTGTTTCTTCGCCATTGTCGATCGCCGAGCGCAGCAACGCCACCAGGTAGAAGACATCGTCCTCCGGGGTCACGGCGGAGCTCCTCGGGTCCCATCTACACAACAAAAAAGTGGAACCAACTGTTATCAAGAGAGGTATGGACCCTGGACTTGATAATTCTAAGATGTAGTGAAATAATGTCTCCATTACAACACTGCAAAGTTGAGTACGTCAACTGGGACGATAGTAACATCCCCATCGGACCCCATCGGACCCTATCGGAGGGGTCCAACGGAGAAGATCTCCTGACACCAGAATCTTCTCCCATGGGACAATCACCACCCTCCAAGCTGGCTAAACTTGTATTTTGTGGAATTTTTAAAGAAAATTTACCATTTCTTTTTAAAACCCGAGTCGGCTTTACGGTAAATAAGCTTTTTGAGGTTAGAGATTCAAACAATCGGATGTCGTTTTCAAAGACTTCTTAACCTACAAATGAGAAAGAAAAAAAAAAGGAATAAAAAAGAATAGGGAACATACTTATGCTTGTTCATGGGGTAGATGAGGATGGGTCCACTGGTATTATTTCCCAAAATGCCCTTGAAAACACCTCGATCAAAATCAGCAATTCTCGACTTCGGAACAAAGAGATTCAGCCACGGATGCGGGACATCCCACAGCCCCTTGGATCGGAGCTTCAACTCGGCCGTATGAACCCGGTCGAGAAAGTCCACATAACCTAGGTCTGTTGTGAAAACCGACTCGGGTATGTAGTCGAGTTCCTTCAGCAGCGCCTCAACTTCCTGATTAAACAAAGTAGTTTCGTCAGCTACTACTTTATTTTATTCCAATCACTGTTAACAAGAGAATAATTTGGGAGCTGAAAGGCTGTGGATTTAGTGTTATTATTATCCTTAAAGCTATATTCTTTCTCTGTCTTAGGATTTTATAGAATAATTGATTCCCATAAGATCTTCCATCTATTATTCTTCTTCTTTATTATTATCAAAACATATTTTAAAACAAAATCGTTACCGAACCGAACCAAAACATCGATGAATTATTGAACACGAACAATAAACCACAAG

Coding sequence (CDS)

ATGTTGACGCGTAGAATTCCTTCCGTGGCAGTTTATCTCCCGCAAGCTCTGCCATGGCGTCGTGGGCCACCTCATTCAATCAAAGCCAGGACGCCGCTTGAATTCCACTCATTGCTCTCTTTTTGCCCTAAAACTTGTTTACTTTCGTTTTGTTCTGCTTCTCAGTTCTCCTCCGAAGTTGCTGAACCAACTCATATGGATGATTCCTCGAAGCGTGTATCCTTGTCCTTGCAGGGTCCCCTGAAACCTGGGTTATATATCGTTAGCACACCAATTGTTGTTTTGAATAATCAGTCTCTTTATCCCCTTAAAACTCTATTATACAGTGCTCTACGTGTCTTAAAATCAGCAAACGTCATTCTTTCGGAGGATACAAGGCACTCAGGAAAGTTGCTTCAACATTTCAGTATTAAAACCCCTCTTTTGAGTTTTCACAAATTCAATGAGTCTCAAAGGGAGCAAACAGTGTTGAAGAGGTTAAAAGAGGGTGAAATTGTTGCACTAATTAGTGATGCGGGGACGCCAGGCATTAGTGATCCTGGTACTGAGTTGGTAAGACAATGTGTCAATGCAAGCATACCCGTTGTTCCTATTCCTGGACCCTCTGCTGTCATTGCTGCTCTTTCTGCCTCTGGCTTGTCGACCGATGAATTTACCTTTGATGGTTTCATCAATGCCAACTTGATGAATATTTTTGTTTCCGAGCTGTTTTGCAGGCAATGCGTCATAGCTCGTGAAATGACCAAGATACACGAGGAGTTTTGGCGGGGTACCCTGGCGGAAGCTAAAGAATACTTCTCGTTGCACCAAACGAAGGGTGAAATTACGCTGCTGATCGAAGGAAAGCTCAATTCTGAAGTCGAAACTCCATCGGAATCACAGCTGGAAAAGGAGTTGGAAGAATTGATCTCCAGTGGGCATAAGCTTTCTATGGCTGTCAAATTGGTCGCTATCAAAACGTCAGCTAGTAGGAAAACTGTCTATTCAATTGCATTACGAAGATTCGGGAATCAGCTTGGAGCGGAGAACGATTCGTGCAAATAA

Protein sequence

MLTRRIPSVAVYLPQALPWRRGPPHSIKARTPLEFHSLLSFCPKTCLLSFCSASQFSSEVAEPTHMDDSSKRVSLSLQGPLKPGLYIVSTPIVVLNNQSLYPLKTLLYSALRVLKSANVILSEDTRHSGKLLQHFSIKTPLLSFHKFNESQREQTVLKRLKEGEIVALISDAGTPGISDPGTELVRQCVNASIPVVPIPGPSAVIAALSASGLSTDEFTFDGFINANLMNIFVSELFCRQCVIAREMTKIHEEFWRGTLAEAKEYFSLHQTKGEITLLIEGKLNSEVETPSESQLEKELEELISSGHKLSMAVKLVAIKTSASRKTVYSIALRRFGNQLGAENDSCK

Homology

[Close]

BLAST of Cp4.1LG07g04010 vs. ExPASy Swiss-Prot
Match: P74038 (Ribosomal RNA small subunit methyltransferase I OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rsmI PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.3e-44
Identity = 111/278 (39.93%), Postives = 158/278 (56.83%), Query Frame = 0


Query: 85  LYIVSTPIVVLNNQSLYPLKTLLYSALRVLKSANVILSEDTRHSGKLLQHFSIKTPLLSF 144
           LY+V+TPI  L +        +   A+  L++ ++I +EDTRH+GKLLQHF I TP +S+
Sbjct: 4   LYLVATPIGNLGD--------MTPRAVETLQTVDLIAAEDTRHTGKLLQHFQITTPQISY 63

Query: 145 HKFNESQREQTVLKRLKEGEIVALISDAGTPGISDPGTELVRQCVNASIPVVPIPGPSAV 204
           H  N   R Q +L +L+ G+ +AL+SDAGTPGISDPG ELV  C  A+I V+PIPG +A+
Sbjct: 64  HDHNRHGRTQELLAKLQAGQNIALVSDAGTPGISDPGQELVAACGEANIEVIPIPGATAL 123

Query: 205 IAALSASGLSTDEFTFDGFINAN---------------------------LMNIFVSELF 264
           IAAL +SGL+TD F F+GF++                             L  +   + F
Sbjct: 124 IAALISSGLATDRFVFEGFLSTKNRPRQQLLQSLAQEERTIILYEAPHRLLATLTDLQTF 183

Query: 265 C---RQCVIAREMTKIHEEFWRGTLAEAKEYFSLHQTKGEITLLIEGKLNSEVETPSESQ 324
               R   +ARE+TK HE+FWRGTL  A  YF+ +  KGE  L+I G    +  + SE  
Sbjct: 184 LGQERSLTVARELTKYHEQFWRGTLQTAIAYFTENTPKGEFCLVIAGATPEDRPSFSEEN 243

Query: 325 LEKELEELISSGHKLSMAVKLVAIKTSASRKTVYSIAL 333
           L  EL  L++ G   S A + +A +T   R+ +Y ++L
Sbjct: 244 LRDELRSLMAKGLTRSQASRQLAEETKLPRRQLYQLSL 273

[Close]

BLAST of Cp4.1LG07g04010 vs. ExPASy Swiss-Prot
Match: Q9CN04 (Ribosomal RNA small subunit methyltransferase I OS=Pasteurella multocida (strain Pm70) OX=272843 GN=rsmI PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 9.5e-35
Identity = 104/283 (36.75%), Postives = 148/283 (52.30%), Query Frame = 0


Query: 85  LYIVSTPIVVLNNQSLYPLKTLLYSALRVLKSANVILSEDTRHSGKLLQHFSIKTPLLSF 144
           LYIV+TPI          L+ +   AL + +  ++I +EDTRHSG LL H+ IK P  + 
Sbjct: 8   LYIVATPI--------GNLQDITQRALAIFEQVDLIAAEDTRHSGLLLSHYGIKKPFFAL 67

Query: 145 HKFNESQREQTVLKRLKEGEIVALISDAGTPGISDPGTELVRQCVNASIPVVPIPGPSAV 204
           H  NE Q+   ++++L++G+ +ALISDAGTP ISDPG  LVRQC  A I VVPIPG  A 
Sbjct: 68  HDHNEQQKAHLLVEKLQQGQHIALISDAGTPLISDPGFHLVRQCRQAGIKVVPIPGACAA 127

Query: 205 IAALSASGLSTDEFTFDGFINA-------NLMNIFVSE---LFC---------------- 264
           + AL ASG+++D F F+GF+ A        L N+   E   +F                 
Sbjct: 128 VTALCASGIASDRFCFEGFLPAKSKARCDKLQNLAEEERTLIFYESTHRILDTLADIEKT 187

Query: 265 ----RQCVIAREMTKIHEEFWRGTLAEAKEYF--SLHQTKGEITLLIEGKLNSEVETPSE 324
               R  V+ARE+TK  E      +A  +++     ++TKGE+ L+IEGK+  E +  + 
Sbjct: 188 LGAERYVVLAREITKTWETIVGDNVANLRQWLGEDPNRTKGEMVLIIEGKVKQETDEINP 247

Query: 325 SQLEKELEELISSGHKLSMAVKLVAIKTSASRKTVYSIALRRF 336
             L  +  ELIS    L  A  +VA      +  +Y   L  F
Sbjct: 248 QAL--KALELISQSLPLKKAAAIVAEIYGYKKNALYQYGLEHF 280

[Close]

BLAST of Cp4.1LG07g04010 vs. ExPASy Swiss-Prot
Match: P45298 (Ribosomal RNA small subunit methyltransferase I OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=rsmI PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 8.1e-34
Identity = 105/280 (37.50%), Postives = 143/280 (51.07%), Query Frame = 0


Query: 85  LYIVSTPIVVLNNQSLYPLKTLLYSALRVLKSANVILSEDTRHSGKLLQHFSIKTPLLSF 144
           LYIV+TPI          L+ +   AL      ++I +EDTRHSG LL H+ IK P  + 
Sbjct: 8   LYIVATPI--------GNLQDITQRALETFAQVDLIAAEDTRHSGLLLSHYGIKKPFFAL 67

Query: 145 HKFNESQREQTVLKRLKEGEIVALISDAGTPGISDPGTELVRQCVNASIPVVPIPGPSAV 204
           H  NE ++   ++++LK+G  +ALISDAGTP ISDPG  LVRQC  A I VVP+PG  A 
Sbjct: 68  HDHNEQEKAHILVEKLKQGSNIALISDAGTPLISDPGFHLVRQCREAGIRVVPLPGACAA 127

Query: 205 IAALSASGLSTDEFTFDGFINA-------NLMNIFVSE---LFC---------------- 264
           I AL ASG+++D F F+GF+ A        L NI   +   +F                 
Sbjct: 128 ITALCASGIASDRFCFEGFLPAKSKARKDKLENIAEEDRTLIFYESTHRILDTLEDMQAV 187

Query: 265 ----RQCVIAREMTKIHEEFWRGTLAEAKEYF--SLHQTKGEITLLIEGKLNSEVETPSE 324
               R  V+AREMTK  E     T+   +E+     ++TKGE+ L++EGK  S+      
Sbjct: 188 LGEERYIVLAREMTKTWETITGNTIKNLREWLLEDPNRTKGEMVLIVEGKPKSDNNDEIS 247

Query: 325 SQLEKELEELISSGHKLSMAVKLVAIKTSASRKTVYSIAL 333
            Q  K L ELI+    L  A  +VA      +  +Y   L
Sbjct: 248 PQAVKAL-ELIAEELPLKKAAAIVAELYGYKKNALYQFGL 278

[Close]

BLAST of Cp4.1LG07g04010 vs. ExPASy Swiss-Prot
Match: Q9KGL2 (Ribosomal RNA small subunit methyltransferase I OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) OX=272558 GN=rsmI PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 6.8e-33
Identity = 101/283 (35.69%), Postives = 143/283 (50.53%), Query Frame = 0


Query: 82  KPGLYIVSTPIVVLNNQSLYPLKTLLYSALRVLKSANVILSEDTRHSGKLLQHFSIKTPL 141
           K  LY+V+TPI          L+ + + A+R LK A+ I +EDTR + KLL HF I T L
Sbjct: 13  KGTLYLVATPI--------GNLEDVTFRAIRTLKEADQIAAEDTRQTKKLLNHFDIATKL 72

Query: 142 LSFHKFNESQREQTVLKRLKEGEIVALISDAGTPGISDPGTELVRQCVNASIPVVPIPGP 201
           +S+H+ N+    + ++  L EG  +AL+SDAG P ISDPG ELV   +   I V+PIPG 
Sbjct: 73  VSYHEHNKETMGKRLIDDLIEGRTIALVSDAGMPAISDPGYELVVSAIKEGIAVIPIPGA 132

Query: 202 SAVIAALSASGLSTDEFTFDGFIN-----------------------------ANLMNIF 261
           +A + AL ASGL T+ F F GF+                               + ++  
Sbjct: 133 NAAVTALIASGLPTESFQFIGFLPRQKKQRRQALEETKPTKATLIFYESPHRLKDTLDDM 192

Query: 262 VSELFCRQCVIAREMTKIHEEFWRGTLAEAKEYFSLHQTKGEITLLIEGKLNSEVETPSE 321
           +  L  R   I RE+TK +EEF RGTL EA  +      KGE  L++EG  N E   P E
Sbjct: 193 LLILGNRHVSICRELTKTYEEFLRGTLEEAVHWAREATIKGEFCLIVEG--NGEKVEPEE 252

Query: 322 SQLE-----KELEELISSGHKLSMAVKLVAIKTSASRKTVYSI 331
              E     + +E  I+ G +   A+K VA      ++ +Y+I
Sbjct: 253 VWWESLSPVQHVEHYIALGFRSKEAIKQVATDRGVPKRDIYNI 285

[Close]

BLAST of Cp4.1LG07g04010 vs. ExPASy Swiss-Prot
Match: Q9KUD9 (Ribosomal RNA small subunit methyltransferase I OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) OX=243277 GN=rsmI PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 3.4e-32
Identity = 110/292 (37.67%), Postives = 145/292 (49.66%), Query Frame = 0


Query: 83  PGLYIVSTPIVVLNNQSLYPLKTLLYSALRVLKSANVILSEDTRHSGKLLQHFSIKTPLL 142
           P LYIV TPI  L +        +   AL VL S ++I  EDTRH+GKLL HF+I T   
Sbjct: 12  PILYIVPTPIGNLGD--------ITQRALDVLASVDMIAVEDTRHTGKLLAHFNISTKTF 71

Query: 143 SFHKFNESQREQTVLKRLKEGEIVALISDAGTPGISDPGTELVRQCVNASIPVVPIPGPS 202
           + H  NE Q+ Q ++ +L  G  +AL+SDAGTP ISDPG  LV QC  A + VVP+PGP 
Sbjct: 72  ALHDHNEQQKAQVLVDKLLSGLSIALVSDAGTPLISDPGYHLVTQCRQAGVKVVPLPGPC 131

Query: 203 AVIAALSASGLSTDEFTFDGFINA-------NLMNIFVSELFC----------------- 262
           AVI ALSASGL +D F+F+GF+ A        L+ I      C                 
Sbjct: 132 AVITALSASGLPSDSFSFEGFLPAKSKARKDKLLEIAKVSRTCIFYESPHRICESLQDML 191

Query: 263 ------RQCVIAREMTKIHEEFWRGTLAEAKEYFSL--HQTKGEITLLIEGKLNS-EVET 322
                 R+ V+ARE+TK  E      LAE   + +   ++ KGE+ LL+ G  ++ E + 
Sbjct: 192 DVLGGEREVVLARELTKTFETIQGMPLAELITWIAEDDNRKKGEMVLLVHGYRDAGEQQL 251

Query: 323 PSESQ-----LEKELEELISSGHKLSMAVKLVAIKTSASRKTVYSIALRRFG 337
           P E+      L KEL         L  A  LVA      +  +Y   L   G
Sbjct: 252 PDEALRTLTILTKEL--------PLKKAAALVAEIHQLKKNALYKWGLENLG 287

[Close]

BLAST of Cp4.1LG07g04010 vs. NCBI nr
Match: XP_023538391.1 (uncharacterized protein LOC111799188 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 568 bits (1463), Expect = 9.19e-202
Identity = 316/377 (83.82%), Postives = 319/377 (84.62%), Query Frame = 0


Query: 1   MLTRRIPSVAVYLPQALPWRRGPPHSIKARTPLEFHSLLSFCPKTCLLSFCSASQFSSEV 60
           MLTRRIPSVAVYLPQALPWRRGPPHSIKARTPLEFHSLLSFCPKTCLLSFCSASQFSSEV
Sbjct: 1   MLTRRIPSVAVYLPQALPWRRGPPHSIKARTPLEFHSLLSFCPKTCLLSFCSASQFSSEV 60

Query: 61  AEPTHMDDSSKRVSLSLQGPLKPGLYIVSTPIVVLNNQSLYPLKTLLYSALRVLKSANVI 120
           AEPTHMDDSSKR      GPLKPGLYIVSTPI  L + +L         ALRVLKSANVI
Sbjct: 61  AEPTHMDDSSKR------GPLKPGLYIVSTPIGNLEDITL--------RALRVLKSANVI 120

Query: 121 LSEDTRHSGKLLQHFSIKTPLLSFHKFNESQREQTVLKRLKEGEIVALISDAGTPGISDP 180
           LSEDTRHSGKLLQHFSIKTPLLSFHKFNESQREQTVLKRLKEGEIVALISDAGTPGISDP
Sbjct: 121 LSEDTRHSGKLLQHFSIKTPLLSFHKFNESQREQTVLKRLKEGEIVALISDAGTPGISDP 180

Query: 181 GTELVRQCVNASIPVVPIPGPSAVIAALSASGLSTDEFTFDGFI---------------N 240
           GTELVRQCVNASIPVVPIPGPSAVIAALSASGLSTDEFTF GF+               N
Sbjct: 181 GTELVRQCVNASIPVVPIPGPSAVIAALSASGLSTDEFTFVGFVPKHASSRRERLMVSAN 240

Query: 241 ANLMNIF-------------VSELF--CRQCVIAREMTKIHEEFWRGTLAEAKEYFSLHQ 300
                IF              S LF   RQCVIAREMTKIHEEFWRGTLAEAKEYFSLHQ
Sbjct: 241 EEATQIFYVPPHKVKQFLEETSSLFGESRQCVIAREMTKIHEEFWRGTLAEAKEYFSLHQ 300

Query: 301 TKGEITLLIEGKLNSEVETPSESQLEKELEELISSGHKLSMAVKLVAIKTSASRKTVYSI 347
           TKGEITLLIEGKLNSEVETPSESQLEKELEELISSGHKLSMAVKLVAIKTSASRKTVYSI
Sbjct: 301 TKGEITLLIEGKLNSEVETPSESQLEKELEELISSGHKLSMAVKLVAIKTSASRKTVYSI 360

[Close]

BLAST of Cp4.1LG07g04010 vs. NCBI nr
Match: XP_022951884.1 (uncharacterized protein LOC111454620 [Cucurbita moschata])

HSP 1 Score: 558 bits (1438), Expect = 5.88e-198
Identity = 311/377 (82.49%), Postives = 316/377 (83.82%), Query Frame = 0


Query: 1   MLTRRIPSVAVYLPQALPWRRGPPHSIKARTPLEFHSLLSFCPKTCLLSFCSASQFSSEV 60
           MLTRRIPSVAVYLPQALPWRRG PHSI  RTPLEFHSLLSFCPKTCLLSFCSASQFSSEV
Sbjct: 1   MLTRRIPSVAVYLPQALPWRRGLPHSINTRTPLEFHSLLSFCPKTCLLSFCSASQFSSEV 60

Query: 61  AEPTHMDDSSKRVSLSLQGPLKPGLYIVSTPIVVLNNQSLYPLKTLLYSALRVLKSANVI 120
           AEPTH+DDSSKR      GPLKPGLYIVSTPI  L + +L         ALRVLKSANVI
Sbjct: 61  AEPTHLDDSSKR------GPLKPGLYIVSTPIGNLEDITL--------RALRVLKSANVI 120

Query: 121 LSEDTRHSGKLLQHFSIKTPLLSFHKFNESQREQTVLKRLKEGEIVALISDAGTPGISDP 180
           LSEDTRHSGKLLQHFSIKTPLLSFHKFNESQREQTVLKRLKEGEIVALISDAGTPGISDP
Sbjct: 121 LSEDTRHSGKLLQHFSIKTPLLSFHKFNESQREQTVLKRLKEGEIVALISDAGTPGISDP 180

Query: 181 GTELVRQCVNASIPVVPIPGPSAVIAALSASGLSTDEFTFDGFI---------------N 240
           GTELVRQCVNASIPVVPIPGPSAVIAALSASGLSTDEFTF GF+               N
Sbjct: 181 GTELVRQCVNASIPVVPIPGPSAVIAALSASGLSTDEFTFVGFVPKHAASRRERLMVSAN 240

Query: 241 ANLMNIF-------------VSELF--CRQCVIAREMTKIHEEFWRGTLAEAKEYFSLHQ 300
                IF              S LF   RQCVIAREMTKIHEEFWRGTLAEAKEYFSLHQ
Sbjct: 241 EEATQIFYVPPHKVKQFLEETSSLFGESRQCVIAREMTKIHEEFWRGTLAEAKEYFSLHQ 300

Query: 301 TKGEITLLIEGKLNSEVETPSESQLEKELEELISSGHKLSMAVKLVAIKTSASRKTVYSI 347
           TKGEITLLIEGKLNSEVETPSESQLEKELEELISSGH+LSMAVKLVAIKTSASRKTVYSI
Sbjct: 301 TKGEITLLIEGKLNSEVETPSESQLEKELEELISSGHRLSMAVKLVAIKTSASRKTVYSI 360

[Close]

BLAST of Cp4.1LG07g04010 vs. NCBI nr
Match: KAG6585572.1 (hypothetical protein SDJN03_18305, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 551 bits (1419), Expect = 4.59e-195
Identity = 308/377 (81.70%), Postives = 314/377 (83.29%), Query Frame = 0


Query: 1   MLTRRIPSVAVYLPQALPWRRGPPHSIKARTPLEFHSLLSFCPKTCLLSFCSASQFSSEV 60
           MLTRRIPSVAVYLPQALPWRRG PHSI  RTPLEFHSLLSF PKTCLLSFCSASQFSSEV
Sbjct: 1   MLTRRIPSVAVYLPQALPWRRGLPHSINTRTPLEFHSLLSFFPKTCLLSFCSASQFSSEV 60

Query: 61  AEPTHMDDSSKRVSLSLQGPLKPGLYIVSTPIVVLNNQSLYPLKTLLYSALRVLKSANVI 120
           AEPTH+DDSSKR      GPLKPGLYIVSTPI  L + +L         ALRVLKSANVI
Sbjct: 61  AEPTHLDDSSKR------GPLKPGLYIVSTPIGNLEDITL--------RALRVLKSANVI 120

Query: 121 LSEDTRHSGKLLQHFSIKTPLLSFHKFNESQREQTVLKRLKEGEIVALISDAGTPGISDP 180
           LSEDTRHSGKLLQHFSIKTPLLSFHKFNESQREQTVLKRLKEGEIVALI DAGTPGISDP
Sbjct: 121 LSEDTRHSGKLLQHFSIKTPLLSFHKFNESQREQTVLKRLKEGEIVALICDAGTPGISDP 180

Query: 181 GTELVRQCVNASIPVVPIPGPSAVIAALSASGLSTDEFTFDGFI---------------N 240
           GTELVRQCVNASIPVVPIPGPSAVIAALSASGLSTDEFTF GF+               N
Sbjct: 181 GTELVRQCVNASIPVVPIPGPSAVIAALSASGLSTDEFTFVGFVPKHAASRRERLMVSAN 240

Query: 241 ANLMNIF-------------VSELF--CRQCVIAREMTKIHEEFWRGTLAEAKEYFSLHQ 300
                IF              S LF   RQCVIAREMTKIHEEFWRGTLAEAKEYFSLHQ
Sbjct: 241 EEATQIFYVPPHKVKQFLEETSSLFGESRQCVIAREMTKIHEEFWRGTLAEAKEYFSLHQ 300

Query: 301 TKGEITLLIEGKLNSEVETPSESQLEKELEELISSGHKLSMAVKLVAIKTSASRKTVYSI 347
           TKGEITLLIEGKLNSEVETPSESQLEKELEELISSGH+LSMAVKLV+IKTSASRKTVYSI
Sbjct: 301 TKGEITLLIEGKLNSEVETPSESQLEKELEELISSGHRLSMAVKLVSIKTSASRKTVYSI 360

[Close]

BLAST of Cp4.1LG07g04010 vs. NCBI nr
Match: XP_023002398.1 (uncharacterized protein LOC111496252 [Cucurbita maxima])

HSP 1 Score: 550 bits (1418), Expect = 6.52e-195
Identity = 307/377 (81.43%), Postives = 313/377 (83.02%), Query Frame = 0


Query: 1   MLTRRIPSVAVYLPQALPWRRGPPHSIKARTPLEFHSLLSFCPKTCLLSFCSASQFSSEV 60
           MLTRRIPSVAVYLPQALPWRRGPPHSI  RTPLEFHSLLSFCPKTCLLSFCSASQFSSEV
Sbjct: 1   MLTRRIPSVAVYLPQALPWRRGPPHSINTRTPLEFHSLLSFCPKTCLLSFCSASQFSSEV 60

Query: 61  AEPTHMDDSSKRVSLSLQGPLKPGLYIVSTPIVVLNNQSLYPLKTLLYSALRVLKSANVI 120
           AEPTHMDDSSKR      G LKPGLYIVSTPI  L + +L         ALRVLKSANVI
Sbjct: 61  AEPTHMDDSSKR------GSLKPGLYIVSTPIGNLEDITL--------RALRVLKSANVI 120

Query: 121 LSEDTRHSGKLLQHFSIKTPLLSFHKFNESQREQTVLKRLKEGEIVALISDAGTPGISDP 180
           LSEDTRHSGKLLQHFSIKTPLLSFHKFNESQREQTVLKRLKEGEIVALISDAGTPGISDP
Sbjct: 121 LSEDTRHSGKLLQHFSIKTPLLSFHKFNESQREQTVLKRLKEGEIVALISDAGTPGISDP 180

Query: 181 GTELVRQCVNASIPVVPIPGPSAVIAALSASGLSTDEFTFDGFI---------------N 240
           GTELVR CVNASIPVVPIPGPSAVIAALSASGLST+EFTF GF+               N
Sbjct: 181 GTELVRLCVNASIPVVPIPGPSAVIAALSASGLSTNEFTFVGFVPKHAASRRKRLMVSAN 240

Query: 241 ANLMNIF-------------VSELF--CRQCVIAREMTKIHEEFWRGTLAEAKEYFSLHQ 300
                IF              S LF   R+CVIAREMTKIHEEFWRGTLAEAKEYFSLHQ
Sbjct: 241 EEATQIFYVPPHKVKQFLEETSSLFGESRKCVIAREMTKIHEEFWRGTLAEAKEYFSLHQ 300

Query: 301 TKGEITLLIEGKLNSEVETPSESQLEKELEELISSGHKLSMAVKLVAIKTSASRKTVYSI 347
           TKGEITLLIEGKLNSEVETPSESQLE ELEELISSGH+LSMAVKLVAIKTSASRKTVYSI
Sbjct: 301 TKGEITLLIEGKLNSEVETPSESQLENELEELISSGHRLSMAVKLVAIKTSASRKTVYSI 360

[Close]

BLAST of Cp4.1LG07g04010 vs. NCBI nr
Match: XP_038886193.1 (ribosomal RNA small subunit methyltransferase I [Benincasa hispida])

HSP 1 Score: 509 bits (1310), Expect = 1.78e-178
Identity = 280/377 (74.27%), Postives = 301/377 (79.84%), Query Frame = 0


Query: 1   MLTRRIPSVAVYLPQALPWRRGPPHSIKARTPLEFHSLLSFCPKTCLLSFCSASQFSSEV 60
           MLTRRIPSVAVYLPQALPWRRGPPHSI  RTPLEFHS L+FCPK+C +SFCSASQ  SE 
Sbjct: 1   MLTRRIPSVAVYLPQALPWRRGPPHSINPRTPLEFHSFLAFCPKSCFVSFCSASQSISEA 60

Query: 61  AEPTHMDDSSKRVSLSLQGPLKPGLYIVSTPIVVLNNQSLYPLKTLLYSALRVLKSANVI 120
            EP H ++S KR       PLKPGLY+V TPI  L + +L         ALRVLKSA+VI
Sbjct: 61  VEPIHAEESLKRE------PLKPGLYLVGTPIGNLEDITL--------RALRVLKSAHVI 120

Query: 121 LSEDTRHSGKLLQHFSIKTPLLSFHKFNESQREQTVLKRLKEGEIVALISDAGTPGISDP 180
           LSEDTRHSGKLLQHFSI+TPLLSFHKFNESQREQTV+KRLKEGEIVALISDAGTPGISDP
Sbjct: 121 LSEDTRHSGKLLQHFSIRTPLLSFHKFNESQREQTVVKRLKEGEIVALISDAGTPGISDP 180

Query: 181 GTELVRQCVNASIPVVPIPGPSAVIAALSASGLSTDEFTFDGFI---------------N 240
           GTELVR CVN +IPV+P+PGPSAV+AA+SASGLSTDEFTF GF+               +
Sbjct: 181 GTELVRLCVNKNIPVIPVPGPSAVVAAISASGLSTDEFTFVGFVPKHAASRRERLMVSAS 240

Query: 241 ANLMNIF-------------VSELF--CRQCVIAREMTKIHEEFWRGTLAEAKEYFSLHQ 300
                IF              S+LF   RQCVIAREMTKIHEEFWRGTLAEAKE+FSLHQ
Sbjct: 241 EEATQIFYVPPHKLKQFLEETSQLFGESRQCVIAREMTKIHEEFWRGTLAEAKEFFSLHQ 300

Query: 301 TKGEITLLIEGKLNSEVETPSESQLEKELEELISSGHKLSMAVKLVAIKTSASRKTVYSI 347
           TKGEITLLIEG LNSEVETPSESQLEKELEELISSGH+LS AVKLVA KTSA RKTVYSI
Sbjct: 301 TKGEITLLIEGNLNSEVETPSESQLEKELEELISSGHRLSTAVKLVASKTSARRKTVYSI 360

[Close]

BLAST of Cp4.1LG07g04010 vs. ExPASy TrEMBL
Match: A0A6J1GK22 (uncharacterized protein LOC111454620 OS=Cucurbita moschata OX=3662 GN=LOC111454620 PE=3 SV=1)

HSP 1 Score: 558 bits (1438), Expect = 2.85e-198
Identity = 311/377 (82.49%), Postives = 316/377 (83.82%), Query Frame = 0


Query: 1   MLTRRIPSVAVYLPQALPWRRGPPHSIKARTPLEFHSLLSFCPKTCLLSFCSASQFSSEV 60
           MLTRRIPSVAVYLPQALPWRRG PHSI  RTPLEFHSLLSFCPKTCLLSFCSASQFSSEV
Sbjct: 1   MLTRRIPSVAVYLPQALPWRRGLPHSINTRTPLEFHSLLSFCPKTCLLSFCSASQFSSEV 60

Query: 61  AEPTHMDDSSKRVSLSLQGPLKPGLYIVSTPIVVLNNQSLYPLKTLLYSALRVLKSANVI 120
           AEPTH+DDSSKR      GPLKPGLYIVSTPI  L + +L         ALRVLKSANVI
Sbjct: 61  AEPTHLDDSSKR------GPLKPGLYIVSTPIGNLEDITL--------RALRVLKSANVI 120

Query: 121 LSEDTRHSGKLLQHFSIKTPLLSFHKFNESQREQTVLKRLKEGEIVALISDAGTPGISDP 180
           LSEDTRHSGKLLQHFSIKTPLLSFHKFNESQREQTVLKRLKEGEIVALISDAGTPGISDP
Sbjct: 121 LSEDTRHSGKLLQHFSIKTPLLSFHKFNESQREQTVLKRLKEGEIVALISDAGTPGISDP 180

Query: 181 GTELVRQCVNASIPVVPIPGPSAVIAALSASGLSTDEFTFDGFI---------------N 240
           GTELVRQCVNASIPVVPIPGPSAVIAALSASGLSTDEFTF GF+               N
Sbjct: 181 GTELVRQCVNASIPVVPIPGPSAVIAALSASGLSTDEFTFVGFVPKHAASRRERLMVSAN 240

Query: 241 ANLMNIF-------------VSELF--CRQCVIAREMTKIHEEFWRGTLAEAKEYFSLHQ 300
                IF              S LF   RQCVIAREMTKIHEEFWRGTLAEAKEYFSLHQ
Sbjct: 241 EEATQIFYVPPHKVKQFLEETSSLFGESRQCVIAREMTKIHEEFWRGTLAEAKEYFSLHQ 300

Query: 301 TKGEITLLIEGKLNSEVETPSESQLEKELEELISSGHKLSMAVKLVAIKTSASRKTVYSI 347
           TKGEITLLIEGKLNSEVETPSESQLEKELEELISSGH+LSMAVKLVAIKTSASRKTVYSI
Sbjct: 301 TKGEITLLIEGKLNSEVETPSESQLEKELEELISSGHRLSMAVKLVAIKTSASRKTVYSI 360

[Close]

BLAST of Cp4.1LG07g04010 vs. ExPASy TrEMBL
Match: A0A6J1KTF7 (uncharacterized protein LOC111496252 OS=Cucurbita maxima OX=3661 GN=LOC111496252 PE=3 SV=1)

HSP 1 Score: 550 bits (1418), Expect = 3.16e-195
Identity = 307/377 (81.43%), Postives = 313/377 (83.02%), Query Frame = 0


Query: 1   MLTRRIPSVAVYLPQALPWRRGPPHSIKARTPLEFHSLLSFCPKTCLLSFCSASQFSSEV 60
           MLTRRIPSVAVYLPQALPWRRGPPHSI  RTPLEFHSLLSFCPKTCLLSFCSASQFSSEV
Sbjct: 1   MLTRRIPSVAVYLPQALPWRRGPPHSINTRTPLEFHSLLSFCPKTCLLSFCSASQFSSEV 60

Query: 61  AEPTHMDDSSKRVSLSLQGPLKPGLYIVSTPIVVLNNQSLYPLKTLLYSALRVLKSANVI 120
           AEPTHMDDSSKR      G LKPGLYIVSTPI  L + +L         ALRVLKSANVI
Sbjct: 61  AEPTHMDDSSKR------GSLKPGLYIVSTPIGNLEDITL--------RALRVLKSANVI 120

Query: 121 LSEDTRHSGKLLQHFSIKTPLLSFHKFNESQREQTVLKRLKEGEIVALISDAGTPGISDP 180
           LSEDTRHSGKLLQHFSIKTPLLSFHKFNESQREQTVLKRLKEGEIVALISDAGTPGISDP
Sbjct: 121 LSEDTRHSGKLLQHFSIKTPLLSFHKFNESQREQTVLKRLKEGEIVALISDAGTPGISDP 180

Query: 181 GTELVRQCVNASIPVVPIPGPSAVIAALSASGLSTDEFTFDGFI---------------N 240
           GTELVR CVNASIPVVPIPGPSAVIAALSASGLST+EFTF GF+               N
Sbjct: 181 GTELVRLCVNASIPVVPIPGPSAVIAALSASGLSTNEFTFVGFVPKHAASRRKRLMVSAN 240

Query: 241 ANLMNIF-------------VSELF--CRQCVIAREMTKIHEEFWRGTLAEAKEYFSLHQ 300
                IF              S LF   R+CVIAREMTKIHEEFWRGTLAEAKEYFSLHQ
Sbjct: 241 EEATQIFYVPPHKVKQFLEETSSLFGESRKCVIAREMTKIHEEFWRGTLAEAKEYFSLHQ 300

Query: 301 TKGEITLLIEGKLNSEVETPSESQLEKELEELISSGHKLSMAVKLVAIKTSASRKTVYSI 347
           TKGEITLLIEGKLNSEVETPSESQLE ELEELISSGH+LSMAVKLVAIKTSASRKTVYSI
Sbjct: 301 TKGEITLLIEGKLNSEVETPSESQLENELEELISSGHRLSMAVKLVAIKTSASRKTVYSI 360

[Close]

BLAST of Cp4.1LG07g04010 vs. ExPASy TrEMBL
Match: A0A1S3BBU6 (ribosomal RNA small subunit methyltransferase I OS=Cucumis melo OX=3656 GN=LOC103488001 PE=3 SV=1)

HSP 1 Score: 489 bits (1259), Expect = 5.31e-171
Identity = 274/379 (72.30%), Postives = 300/379 (79.16%), Query Frame = 0


Query: 1   MLTRRIPSVAVYLPQALPWRRGPPHS--IKARTPLEFHSLLSFCPKTCLLSFCSASQFSS 60
           ML RR+PSVAVYLPQALPWRR PPHS  I +RT L FHSLL+FCPKT L+S CSASQ ++
Sbjct: 1   MLARRMPSVAVYLPQALPWRRRPPHSHSINSRTALVFHSLLAFCPKTILVSLCSASQLAT 60

Query: 61  EVAEPTHMDDSSKRVSLSLQGPLKPGLYIVSTPIVVLNNQSLYPLKTLLYSALRVLKSAN 120
           E  EP H ++ SKR      GPLKPGLY+V TPI  L + +L         ALRVLKSA+
Sbjct: 61  EAVEPIHAEEFSKR------GPLKPGLYLVGTPIGNLEDITL--------RALRVLKSAH 120

Query: 121 VILSEDTRHSGKLLQHFSIKTPLLSFHKFNESQREQTVLKRLKEGEIVALISDAGTPGIS 180
           VILSEDTRHSGKLLQHFSIKTPLLSFHKFNESQREQTVLKRLK+GEIVALISDAGTPGIS
Sbjct: 121 VILSEDTRHSGKLLQHFSIKTPLLSFHKFNESQREQTVLKRLKQGEIVALISDAGTPGIS 180

Query: 181 DPGTELVRQCVNASIPVVPIPGPSAVIAALSASGLSTDEFTFDGFI-------------- 240
           DPGTELVR CVN +IPVVP+PGPSAV+AA+SASGLSTDEFTF GF+              
Sbjct: 181 DPGTELVRLCVNENIPVVPVPGPSAVVAAISASGLSTDEFTFVGFLPKHAATRRERLMVS 240

Query: 241 -NANLMNIF-------------VSELF--CRQCVIAREMTKIHEEFWRGTLAEAKEYFSL 300
            N     IF              S+LF   R+CVIAREMTKIHEEFWRGTLAEAKE+FSL
Sbjct: 241 ANEEATQIFYVPPHKLKQFLEETSQLFGESRRCVIAREMTKIHEEFWRGTLAEAKEFFSL 300

Query: 301 HQTKGEITLLIEGKLNSEVETPSESQLEKELEELISSGHKLSMAVKLVAIKTSASRKTVY 347
           + TKGEITLLIEGKL+ EVETPSESQLEKELEELIS+GH+LSMAVKLVA KTSASRKTVY
Sbjct: 301 NPTKGEITLLIEGKLSPEVETPSESQLEKELEELISTGHRLSMAVKLVASKTSASRKTVY 360

[Close]

BLAST of Cp4.1LG07g04010 vs. ExPASy TrEMBL
Match: A0A0A0LRJ7 (TP_methylase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G362440 PE=3 SV=1)

HSP 1 Score: 488 bits (1257), Expect = 1.07e-170
Identity = 276/379 (72.82%), Postives = 297/379 (78.36%), Query Frame = 0


Query: 1   MLTRRIPSVAVYLPQALPWRRGPPHS--IKARTPLEFHSLLSFCPKTCLLSFCSASQFSS 60
           ML RRIPSVAVYLPQALPWRR PPHS  I   T LEFHSLL+FCPKT L+S CSASQ + 
Sbjct: 1   MLARRIPSVAVYLPQALPWRRRPPHSYSINYGTALEFHSLLAFCPKTLLVSLCSASQLTY 60

Query: 61  EVAEPTHMDDSSKRVSLSLQGPLKPGLYIVSTPIVVLNNQSLYPLKTLLYSALRVLKSAN 120
           E  EP H ++SSKR      G LKPGLY+V TPI  L + +L         ALRVLKSA+
Sbjct: 61  EAVEPIHAEESSKR------GSLKPGLYLVGTPIGNLEDITL--------RALRVLKSAH 120

Query: 121 VILSEDTRHSGKLLQHFSIKTPLLSFHKFNESQREQTVLKRLKEGEIVALISDAGTPGIS 180
           VILSEDTRHSGKLLQHFSIKTPLLSFHKFNESQREQTVLKRLK+GEIVALISDAGTPGIS
Sbjct: 121 VILSEDTRHSGKLLQHFSIKTPLLSFHKFNESQREQTVLKRLKQGEIVALISDAGTPGIS 180

Query: 181 DPGTELVRQCVNASIPVVPIPGPSAVIAALSASGLSTDEFTFDGFI-------------- 240
           DPGTELVR CVN +IPVVP+PGPSAV+AA+SASGLSTDEFTF GF+              
Sbjct: 181 DPGTELVRLCVNENIPVVPVPGPSAVVAAISASGLSTDEFTFVGFLPKHAASRRERLMVS 240

Query: 241 -NANLMNIF-------------VSELF--CRQCVIAREMTKIHEEFWRGTLAEAKEYFSL 300
            N     IF              S+LF   R+CVIAREMTKIHEEFWRGTLAEAKE+FSL
Sbjct: 241 ANEEATQIFYVPPHKLKQFLEETSQLFGESRRCVIAREMTKIHEEFWRGTLAEAKEFFSL 300

Query: 301 HQTKGEITLLIEGKLNSEVETPSESQLEKELEELISSGHKLSMAVKLVAIKTSASRKTVY 347
           +QTKGEITLLIEGKL  EVETPSESQLEKELEELIS+GH+LSMAVKLVA KTS SRKTVY
Sbjct: 301 NQTKGEITLLIEGKLCPEVETPSESQLEKELEELISTGHRLSMAVKLVASKTSTSRKTVY 360

[Close]

BLAST of Cp4.1LG07g04010 vs. ExPASy TrEMBL
Match: A0A6J1CS92 (uncharacterized protein LOC111014109 OS=Momordica charantia OX=3673 GN=LOC111014109 PE=3 SV=1)

HSP 1 Score: 470 bits (1209), Expect = 1.78e-163
Identity = 263/377 (69.76%), Postives = 293/377 (77.72%), Query Frame = 0


Query: 1   MLTRRIPSVAVYLPQALPWRRGPPHSIKARTPLEFHSLLSFCPKTCLLSFCSASQFSSEV 60
           ML RRIPS+AV+LP+ +PWRRGP H I ART L+ HS   FCPKTCL+S CSASQ SSEV
Sbjct: 1   MLARRIPSMAVHLPEVVPWRRGPSHCINARTALDSHS---FCPKTCLVSLCSASQLSSEV 60

Query: 61  AEPTHMDDSSKRVSLSLQGPLKPGLYIVSTPIVVLNNQSLYPLKTLLYSALRVLKSANVI 120
           A+    ++SSKR      GPLKPGLY+V TPI  L + +L         A+RVLKSA+VI
Sbjct: 61  ADSVQAEESSKR------GPLKPGLYLVGTPIGNLEDITL--------RAIRVLKSAHVI 120

Query: 121 LSEDTRHSGKLLQHFSIKTPLLSFHKFNESQREQTVLKRLKEGEIVALISDAGTPGISDP 180
           LSEDTRHSGKLL HF+I+TPLLSFHKFNESQREQ+VLKRLK+GEIVALISDAGTPGISDP
Sbjct: 121 LSEDTRHSGKLLHHFNIRTPLLSFHKFNESQREQSVLKRLKQGEIVALISDAGTPGISDP 180

Query: 181 GTELVRQCVNASIPVVPIPGPSAVIAALSASGLSTDEFTFDGFI---------------N 240
           G+ELV+ CVN  IPVVPIPGPSAV+AALSASGLSTDEFTF GF+               N
Sbjct: 181 GSELVKLCVNEDIPVVPIPGPSAVVAALSASGLSTDEFTFVGFVPKHSASRRERLTVSAN 240

Query: 241 ANLMNIF-------------VSELF--CRQCVIAREMTKIHEEFWRGTLAEAKEYFSLHQ 300
                IF                LF   R+CVIAREMTKIHEEFWRGTLAEAKE+FSLHQ
Sbjct: 241 EEATQIFYVPPHKLKQFLEETLSLFGESRRCVIAREMTKIHEEFWRGTLAEAKEFFSLHQ 300

Query: 301 TKGEITLLIEGKLNSEVETPSESQLEKELEELISSGHKLSMAVKLVAIKTSASRKTVYSI 347
           TKGEITLLIEGKL+S VE PSE QLEKEL+ELISSGH+LSMAVKLVA KTSASRKTVYSI
Sbjct: 301 TKGEITLLIEGKLDSGVEAPSELQLEKELQELISSGHRLSMAVKLVASKTSASRKTVYSI 360

[Close]

BLAST of Cp4.1LG07g04010 vs. TAIR 10
Match: AT1G45110.1 (Tetrapyrrole (Corrin/Porphyrin) Methylases )

HSP 1 Score: 315.8 bits (808), Expect = 4.2e-86
Identity = 184/330 (55.76%), Postives = 226/330 (68.48%), Query Frame = 0


Query: 45  TCLLSFCSASQFSSEVAEPTHMDDSSKRVSLSLQGPLKPGLYIVSTPIVVLNNQSLYPLK 104
           T  +SFCS+S+F+  VA+     D SKR      GPLKPGLY+V TPI  L + +L    
Sbjct: 28  TAAISFCSSSEFADSVAK-----DDSKR------GPLKPGLYLVGTPIGNLEDITL---- 87

Query: 105 TLLYSALRVLKSANVILSEDTRHSGKLLQHFSIKTPLLSFHKFNESQREQTVLKRLKEGE 164
                A+RVL+SA+VILSEDTRHSGKLLQ+++IK  LLS+HKFNE+QREQ VL RLK+GE
Sbjct: 88  ----RAIRVLRSADVILSEDTRHSGKLLQYYNIKAQLLSYHKFNEAQREQAVLTRLKQGE 147

Query: 165 IVALISDAGTPGISDPGTELVRQCVNASIPVVPIPGPSAVIAALSASGLSTDEFTFDGFI 224
           IVALISDAGTPGISDPGT+L + C   +I V+PIPG  AV+AALSASGL TDEFTF GF+
Sbjct: 148 IVALISDAGTPGISDPGTQLAKMCAKENIDVIPIPGACAVVAALSASGLETDEFTFVGFL 207

Query: 225 ---------------NANLMNIF------VSELF---------CRQCVIAREMTKIHEEF 284
                          N     IF      +S+            RQCVIARE+TK+HEEF
Sbjct: 208 PKHSGTRKERLIVSSNETRTQIFYVPPHKLSQFLEETTPYFGESRQCVIAREITKLHEEF 267

Query: 285 WRGTLAEAKEYFSLHQTKGEITLLIEGKLNSEVETPSESQLEKELEELISSGHKLSMAVK 344
           WRG++AEAK+ F + Q KGEITLLIEGK  ++ E P+ESQLE+EL  LIS GH LS AVK
Sbjct: 268 WRGSIAEAKQEFLIRQPKGEITLLIEGKEETKAENPTESQLEEELRGLISDGHSLSTAVK 327

The following BLAST results are available for this feature:

BLAST of Cp4.1LG07g04010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P74038	1.3e-44	39.93	Ribosomal RNA small subunit methyltransferase I OS=Synechocystis sp. (strain PCC...	[more]
Q9CN04	9.5e-35	36.75	Ribosomal RNA small subunit methyltransferase I OS=Pasteurella multocida (strain...	[more]
P45298	8.1e-34	37.50	Ribosomal RNA small subunit methyltransferase I OS=Haemophilus influenzae (strai...	[more]
Q9KGL2	6.8e-33	35.69	Ribosomal RNA small subunit methyltransferase I OS=Bacillus halodurans (strain A...	[more]
Q9KUD9	3.4e-32	37.67	Ribosomal RNA small subunit methyltransferase I OS=Vibrio cholerae serotype O1 (...	[more]

BLAST of Cp4.1LG07g04010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023538391.1	9.19e-202	83.82	uncharacterized protein LOC111799188 [Cucurbita pepo subsp. pepo]	[more]
XP_022951884.1	5.88e-198	82.49	uncharacterized protein LOC111454620 [Cucurbita moschata]	[more]
KAG6585572.1	4.59e-195	81.70	hypothetical protein SDJN03_18305, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023002398.1	6.52e-195	81.43	uncharacterized protein LOC111496252 [Cucurbita maxima]	[more]
XP_038886193.1	1.78e-178	74.27	ribosomal RNA small subunit methyltransferase I [Benincasa hispida]	[more]

BLAST of Cp4.1LG07g04010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GK22	2.85e-198	82.49	uncharacterized protein LOC111454620 OS=Cucurbita moschata OX=3662 GN=LOC1114546...	[more]
A0A6J1KTF7	3.16e-195	81.43	uncharacterized protein LOC111496252 OS=Cucurbita maxima OX=3661 GN=LOC111496252...	[more]
A0A1S3BBU6	5.31e-171	72.30	ribosomal RNA small subunit methyltransferase I OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0LRJ7	1.07e-170	72.82	TP_methylase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G36244...	[more]
A0A6J1CS92	1.78e-163	69.76	uncharacterized protein LOC111014109 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]

BLAST of Cp4.1LG07g04010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G45110.1	4.2e-86	55.76	Tetrapyrrole (Corrin/Porphyrin) Methylases	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014776	Tetrapyrrole methylase, subdomain 2	GENE3D	3.30.950.10		coord: 228..283 e-value: 6.1E-12 score: 47.5
IPR014776	Tetrapyrrole methylase, subdomain 2	GENE3D	3.30.950.10		coord: 201..227 e-value: 3.7E-6 score: 28.8
IPR014777	Tetrapyrrole methylase, subdomain 1	GENE3D	3.40.1010.10		coord: 81..200 e-value: 7.3E-35 score: 121.3
IPR000878	Tetrapyrrole methylase	PFAM	PF00590	TP_methylase	coord: 110..217 e-value: 3.8E-13 score: 49.9
IPR008189	rRNA small subunit methyltransferase I	PANTHER	PTHR46111	RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I	coord: 239..343 coord: 69..225
IPR008189	rRNA small subunit methyltransferase I	CDD	cd11648	RsmI	coord: 86..280 e-value: 7.1771E-93 score: 274.261
IPR018063	SAM-dependent methyltransferase RsmI, conserved site	PROSITE	PS01296	RSMI	coord: 170..181
IPR035996	Tetrapyrrole methylase superfamily	SUPERFAMILY	53790	Tetrapyrrole methylase	coord: 83..279

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG07g04010.1	Cp4.1LG07g04010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032259	methylation
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0008168	methyltransferase activity