Cp4.1LG07g01980 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG07g01980
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Aminoacyl-tRNA hydrolase
Location	Cp4.1LG07: 1655932 .. 1659971 (-)
RNA-Seq Expression	Cp4.1LG07g01980
Synteny	Cp4.1LG07g01980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCGGTAATTTCAGCGTCTCGATTTACATTCTCCATTTCGAATTCCGCGAGGCTCTGTTCGAACGCTAGGGTTTGGCCACGTTCTTCACTTTGTCTCCGCTCTTGGAATTGGAATTCCATTTCGTTTAGCTCGGCTTCTATGAGTGAATCTGGTGAAAGTAATTCTGTTCTTCCACTGGACGACGGCGGAGCGAAGGCGGAGGAGGCCGCCGACGTTTTGGTTCAGTACGTGGTGCTACGGAGAGATCTGATCGATTCGTGGCCGCTCGGAAGTGTTGTGACTCAGGGATGCCATGCTTCAGTCTCCGCCATTTGGTTGAATAAAGACGATCCTCACACTTCGGAGTACTGTAGTCCCCAAAATATCGATTCTATGCACAAGGTTAGCCGAAGATTTGTTTTCAACGGTAGTACATTGAACTTGAACAATGCAGTATGCGTCCATAGTCTTGATTCTTGTTTGTTGAAATGCTGAAATTCTTCTTTATTGGTGCTCTGCTCTGTTAAGTCTGTTCTGAAGGTTGACAGATGAAACATTTTTCAGCAATTTGGAACTTCCGTGCTCGGTTGTAGTCGGGGAAGAACACTTTGTCTCTGATCTTCAATATTTCTTTCGTCACGTGTCTAACATTTTAGGACAATGGTCTATTTTTTTCCGTCTGAGGAAATTCTCAACTCTGAATCTATTTTGCTTGTATGGAGCTGAATATTTTCATTTTTCCACCTAATGTTCATATAGTTTTTAAGAATCCCCACCATAGTCGGAGATCAAGGAGGGCTCATTACTTTCGTATCTCTGCTAGTTCATTTTCTTTTAGTTTTATTTAGTTTTGAAGTGTTCTACATGGTTAACCGCCATTTTGCACGGCAGCCTGTTTAACCAGCTCCATTTTAAGTCCAAGTCTTTTCGTTTCAAGTTTTCAAAACGATTGAACTACCAAAATGGACTTTGGAAAATTCCTTGCGTTTCAGGTTACCATCTTGTGCAAATTAATTTGAAATTACCGGTGTTCTATATTTCATTGATCCCTTATGCCGCTCTGGACTTTTTGGTCCCCGAAGTGGGAATTATCATGCTGACTTTATTCCACTTTTTCCATTTGTAGGTTACTCTCGAGGTGAAGGGAGAAACCCAGATCGTTAACTTATCAGAGAAACTTAAAGCAAATTCAATCGTCCATAAACTGTGGGTAGAACAGCCAGAGAACATTCCAACATGTCTTGCCTCAAAGCCCTACCCCAAATCAGTTGTATCACCATTTTTTAAAAAGCTGAAACTCTGTAAGTGATGGAGTATTAAATTTTAAGGATTGATGAGCAGTAATTTCCTTTACAACTACCCTCCCCGACTCAAAAAAGTGAGAGAGAAGAACGGCTTTCGTGAATTCGACGTTAAAAGGGCTGCTGATTATTTTTATGCACCACTTCTAGTTCATGTTAAACTCTGAATAATTCATTCTACGTTTTGAATCCAGAACTGCAATCTATTTGTATAGAGATCATGCAGATTATAAAAGAGACGTGGAGAAAGGTCAAAATTCTCTAGCAATCTCAAGGTATGTATATCAGTATATCTATTTTTAAGATAGTAGGAGATTATTACACAATCACTGATCATAATCTCAAAACGAAGATTAGATGGGTCACCCCCATCTTAACTTCAAAGATCATGGAAAAGAACTAATCTGTAAGATAACGGTGTTTCTACTGCATAACAAGCTCTCTGTTGCAGCTGTTGCAATTGAACTTGCGTTTACTTTTCCAGTAGAGAGGGAGGAAACAGAACCTCCATTTGGTTTCTACGTCGGTGGCCTGGATCGTGCCTCCGCAGTAGGGACATGCCCCCGGAGCTGGCTGCCTCGACAGGATCCTCTGGTCCTCATCGCACACAAACACCAAACACATCTCTTCTTCTCCTTTGTGTTCTTGCTTTCTGATCCCCTGCTTTTGGGTTTTGGGTGAAAAGTCCGGTTGGGAAAGTAGTGGTGGACTTTGAAGATCAGAGAGATGGATTTATAGGGAGAGAGAGAGAGAAGGAAAGAAAGTTCATGGAATTTGAGAGTTAAAGACCCATTCGTAAAAGAAGAAGAAAAGTAATGTCTTGAAGAAAAGAAAGTTCAAACGGGGACTTTTATACCCTCTTGAGAAGAATTTGTGGCTCATTCTCTAGAAAATTCCTTGATCATTTTTTTGGTAGGTGACTCTGAAGGAAATCGCTTCCCTAACCGCCCATCTTATGAGTCTATTCTTATCTTGTTGGTTTGTTGTATTATTCTATACGAAGGACGTTCGGGAGATGGGAGGGCCTATCGTAAAGGAGTTTTTCTTTTCACGATAGGTGACGGTAAAGCGGGAGCTGCGTATGTCCACAGTGATCAAGGCCTTTCTTGAGACCATAATTCATTTGGACGACCAAACCTTTCGGCTTCTTTGAGTTCATTGAATTGCTTTAGGTAATTTAATTGGTTTATTAGGTAGCAATGGGGATTAGTAGTGTGTAACCATTTCAAAATTTGCTCAAACCCAAACCAAAAACAAAAACAAAAACAAAAAACTATCCTCACATTTATACAAAGTGCTTCANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAATGTGAAGTATGAAATTCAGAAACGATCAATCCGTTGTGAAAAGGTTTAATTAATGAATGGAGAATTATGAATCATTTGGATGAAGATTCATAGTCAATGACTGTCTGAAATGCCCCAGCCAATGCTTTTACCTTGTTCTTCCTCTTCTCCAACAGCTTACTTGCTGTCTCCTCTATCACATCATTGTACACCGCGGAAGCTCTCCCCGCTCCTCCTCCTTGTCGTGGTTTCGCCCCACCCGCTCCACCCTCCTTATCTAAAACAATACCTCCTTCCTCACCTTCTTGATCGGGATCGGTATCGTGATCGGGATCTGTCTCGGTCTTCTCTTCCTCAGCAACAACTTCCTCTTCTTCTACTCCAATTCTCTCTGGGTTCTCCACTTTTCTGTCTCCTTTCTCTGTTTCCCCTTCATTTTGTTCTAATGATTTGGCGGCAGCTGCCTGTGGAGCTTCTTCTTTATCCAAAATTGCTTTCTTTTCCAGGTGATCAGTTCTAAGTTCTTTGCTGAATTCGGGATCGGGAAGATAAGGGTCGAGTTCGCACTCGATCTTCTTCAACTCCTCGTCGTTCATGCCGAGAACGAACGAAGGACTCGGATCAACATGTTCGACAGAATTCTTAGTCTTGTGAACCATTTCCGCTGAAGCAGCATTGCTAGATTCTCTCTTCAAGCTTTTCTTTACATTACTACTTCTCAAACTCTGAACTTGTTGAGTCTGTAGCTTCCCTCCTCCCCCTTTGGTGTTTCTGGAACCTGACCTCTCCAACAAACCAACCTTTGCAGAACTGATAGCCGCGGTGGTGGATTTCGCCCCAAAAGAGGACGATCGGATCGGAAAATTACTCACCCTATTCCTCGGTCCAGGCGATCGAAATGGCTTATCCAAACGCGGTGCAGTCGAAGGCGGTTTGTCGAAAGATCTTCTTCTATTCAAACCCGCCTTGCTCTCAGGTATCGGAGCAGGCACTGCAGACTTCTTGGTTGATTTGAAGCTGCTATGTTCATGGCGGGAGCTGGCCGTGGACTTGAGATAGTTCGGAACATGTTTCTCGGCGAGCGTCGAAAGATGAGCGGCGGAGGAAGATGAAAAAGAAGACGAAAACGATAATTTGTGATCAGTTGAGTGTCCTCTGGGAGATGATTTTGGAGTTCTCTTGGTTGAAGTATTAGGAATAGTAAGAGAACTTGGAGCTGTGATCTTCCTCTCCTTCCCCAAACCGCTGCTTTCCTTTGCTTTATTTGTTGCCATTCAGCTCCTTTCCTTTGAGCATTCAATCATTACCTATATTGAGCGGATATTCGAACACGATAGCTTTTACCGATCATAAACTCAAACCATCCAAACAAAAATTACCCGAGAGCTTCAATAACATTTACTACATAAATCCAAGTTTCTCGAC

mRNA sequence

ATGGCATCGGTAATTTCAGCGTCTCGATTTACATTCTCCATTTCGAATTCCGCGAGGCTCTGTTCGAACGCTAGGGTTTGGCCACGTTCTTCACTTTGTCTCCGCTCTTGGAATTGGAATTCCATTTCGTTTAGCTCGGCTTCTATGAGTGAATCTGGTGAAAGTAATTCTGTTCTTCCACTGGACGACGGCGGAGCGAAGGCGGAGGAGGCCGCCGACGTTTTGGTTCAGTACGTGGTGCTACGGAGAGATCTGATCGATTCGTGGCCGCTCGGAAGTGTTGTGACTCAGGGATGCCATGCTTCAGTCTCCGCCATTTGGTTGAATAAAGACGATCCTCACACTTCGGAGTACTGTAGTCCCCAAAATATCGATTCTATGCACAAGGTTAGCCGAAGATTTGTTTTCAACGGTAGTACATTGAACTTGAACAATGCAGTTACTCTCGAGGTGAAGGGAGAAACCCAGATCGTTAACTTATCAGAGAAACTTAAAGCAAATTCAATCGTCCATAAACTGTGGGTAGAACAGCCAGAGAACATTCCAACATGTCTTGCCTCAAAGCCCTACCCCAAATCAGTTGTATCACCATTTTTTAAAAAGCTGAAACTCTGTAAGTGATGGAGTATTAAATTTTAAGGATTGATGAGCAGTAATTTCCTTTACAACTACCCTCCCCGACTCAAAAAAGTGAGAGAGAAGAACGGCTTTCGTGAATTCGACGTTAAAAGGGCTGCTGATTATTTTTATGCACCACTTCTAGTTCATGTTAAACTCTGAATAATTCATTCTACGTTTTGAATCCAGAACTGCAATCTATTTGTATAGAGATCATGCAGATTATAAAAGAGACGTGGAGAAAGGTCAAAATTCTCTAGCAATCTCAAGGTGATCAGTTCTAAGTTCTTTGCTGAATTCGGGATCGGGAAGATAAGGGTCGAGTTCGCACTCGATCTTCTTCAACTCCTCGTCGTTCATGCCGAGAACGAACGAAGGACTCGGATCAACATGTTCGACAGAATTCTTAGTCTTGTGAACCATTTCCGCTGAAGCAGCATTGCTAGATTCTCTCTTCAAGCTTTTCTTTACATTACTACTTCTCAAACTCTGAACTTGTTGAGTCTGTAGCTTCCCTCCTCCCCCTTTGGTGTTTCTGGAACCTGACCTCTCCAACAAACCAACCTTTGCAGAACTGATAGCCGCGGTGGTGGATTTCGCCCCAAAAGAGGACGATCGGATCGGAAAATTACTCACCCTATTCCTCGGTCCAGGCGATCGAAATGGCTTATCCAAACGCGGTGCAGTCGAAGGCGGTTTGTCGAAAGATCTTCTTCTATTCAAACCCGCCTTGCTCTCAGGTATCGGAGCAGGCACTGCAGACTTCTTGGTTGATTTGAAGCTGCTATGTTCATGGCGGGAGCTGGCCGTGGACTTGAGATAGTTCGGAACATGTTTCTCGGCGAGCGTCGAAAGATGAGCGGCGGAGGAAGATGAAAAAGAAGACGAAAACGATAATTTGTGATCAGTTGAGTGTCCTCTGGGAGATGATTTTGGAGTTCTCTTGGTTGAAGTATTAGGAATAGTAAGAGAACTTGGAGCTGTGATCTTCCTCTCCTTCCCCAAACCGCTGCTTTCCTTTGCTTTATTTGTTGCCATTCAGCTCCTTTCCTTTGAGCATTCAATCATTACCTATATTGAGCGGATATTCGAACACGATAGCTTTTACCGATCATAAACTCAAACCATCCAAACAAAAATTACCCGAGAGCTTCAATAACATTTACTACATAAATCCAAGTTTCTCGAC

Coding sequence (CDS)

ATGGCATCGGTAATTTCAGCGTCTCGATTTACATTCTCCATTTCGAATTCCGCGAGGCTCTGTTCGAACGCTAGGGTTTGGCCACGTTCTTCACTTTGTCTCCGCTCTTGGAATTGGAATTCCATTTCGTTTAGCTCGGCTTCTATGAGTGAATCTGGTGAAAGTAATTCTGTTCTTCCACTGGACGACGGCGGAGCGAAGGCGGAGGAGGCCGCCGACGTTTTGGTTCAGTACGTGGTGCTACGGAGAGATCTGATCGATTCGTGGCCGCTCGGAAGTGTTGTGACTCAGGGATGCCATGCTTCAGTCTCCGCCATTTGGTTGAATAAAGACGATCCTCACACTTCGGAGTACTGTAGTCCCCAAAATATCGATTCTATGCACAAGGTTAGCCGAAGATTTGTTTTCAACGGTAGTACATTGAACTTGAACAATGCAGTTACTCTCGAGGTGAAGGGAGAAACCCAGATCGTTAACTTATCAGAGAAACTTAAAGCAAATTCAATCGTCCATAAACTGTGGGTAGAACAGCCAGAGAACATTCCAACATGTCTTGCCTCAAAGCCCTACCCCAAATCAGTTGTATCACCATTTTTTAAAAAGCTGAAACTCTGTAAGTGA

Protein sequence

MASVISASRFTFSISNSARLCSNARVWPRSSLCLRSWNWNSISFSSASMSESGESNSVLPLDDGGAKAEEAADVLVQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCSPQNIDSMHKVSRRFVFNGSTLNLNNAVTLEVKGETQIVNLSEKLKANSIVHKLWVEQPENIPTCLASKPYPKSVVSPFFKKLKLCK

Homology

[Close]

BLAST of Cp4.1LG07g01980 vs. ExPASy Swiss-Prot
Match: Q3SZ85 (Putative peptidyl-tRNA hydrolase PTRHD1 OS=Bos taurus OX=9913 GN=PTRHD1 PE=2 SV=2)

HSP 1 Score: 114.8 bits (286), Expect = 1.2e-24
Identity = 61/136 (44.85%), Postives = 83/136 (61.03%), Query Frame = 0


Query: 74  VLVQYVVLRRDLID---SWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCSPQNIDSMHKV 133
           +LVQY+VLR+DL     SWP G+VV Q CHA+ +A+ L++D PHT+ Y   + ++ M K 
Sbjct: 24  ILVQYLVLRKDLTQPPFSWPAGAVVAQACHAATAALHLHRDHPHTAAYL--RELERMRK- 83

Query: 134 SRRFVFNGSTLNLNNAVTLEVKGETQIVNLSEKLKANSIVHKLWVEQPENIPTCLASKPY 193
                           V LE   ET +  L+E L+  +I HKLW+EQPENIPTC+A +PY
Sbjct: 84  ----------------VVLEAPDETTLKLLAETLQQKNIDHKLWMEQPENIPTCIALRPY 140

Query: 194 PKSVVSPFFKKLKLCK 207
           PK  VS + KK +L K
Sbjct: 144 PKEEVSQYLKKFRLFK 140

[Close]

BLAST of Cp4.1LG07g01980 vs. ExPASy Swiss-Prot
Match: D3Z4S3 (Putative peptidyl-tRNA hydrolase PTRHD1 OS=Mus musculus OX=10090 GN=Ptrhd1 PE=1 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.4e-22
Identity = 58/136 (42.65%), Postives = 80/136 (58.82%), Query Frame = 0


Query: 74  VLVQYVVLRRDLID---SWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCSPQNIDSMHKV 133
           +LVQY+VLR+DL     SWP G++V Q CHA+ +A+ L++D PHT+ Y   + +  M K 
Sbjct: 24  ILVQYLVLRKDLSQAPFSWPTGALVAQACHAATAALHLHRDHPHTAAYL--RELGRMRK- 83

Query: 134 SRRFVFNGSTLNLNNAVTLEVKGETQIVNLSEKLKANSIVHKLWVEQPENIPTCLASKPY 193
                           V LE   ET +  L+E L+  +I H LW+EQPENI TC+A +PY
Sbjct: 84  ----------------VVLEAADETTLKELAETLQQKNIDHTLWLEQPENIATCIALRPY 140

Query: 194 PKSVVSPFFKKLKLCK 207
           PK  VS + KK +L K
Sbjct: 144 PKEEVSQYLKKFRLFK 140

[Close]

BLAST of Cp4.1LG07g01980 vs. ExPASy Swiss-Prot
Match: Q6GMV3 (Putative peptidyl-tRNA hydrolase PTRHD1 OS=Homo sapiens OX=9606 GN=PTRHD1 PE=1 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.2e-22
Identity = 58/136 (42.65%), Postives = 78/136 (57.35%), Query Frame = 0


Query: 74  VLVQYVVLRRDLID---SWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCSPQNIDSMHKV 133
           VLVQY+VLR+DL     SWP G++V Q CHA+ +A+  ++D PHT+ Y   Q +  M K 
Sbjct: 24  VLVQYLVLRKDLSQAPFSWPAGALVAQACHAATAALHTHRDHPHTAAYL--QELGRMRK- 83

Query: 134 SRRFVFNGSTLNLNNAVTLEVKGETQIVNLSEKLKANSIVHKLWVEQPENIPTCLASKPY 193
                           V LE   ET +  L+E L+  +I H LW+EQPENI TC+A +PY
Sbjct: 84  ----------------VVLEAPDETTLKELAETLQQKNIDHMLWLEQPENIATCIALRPY 140

Query: 194 PKSVVSPFFKKLKLCK 207
           PK  V  + KK +L K
Sbjct: 144 PKEEVGQYLKKFRLFK 140

[Close]

BLAST of Cp4.1LG07g01980 vs. NCBI nr
Match: XP_022951520.1 (putative peptidyl-tRNA hydrolase PTRHD1 isoform X1 [Cucurbita moschata])

HSP 1 Score: 353 bits (905), Expect = 6.31e-122
Identity = 184/206 (89.32%), Postives = 185/206 (89.81%), Query Frame = 0


Query: 1   MASVISASRFTFSISNSARLCSNARVWPRSSLCLRSWNWNSISFSSASMSESGESNSVLP 60
           MASVISASRFTFSISNS RLC NARVW  SS+CLRSWNWNSISFSSASMSESGESNSVLP
Sbjct: 1   MASVISASRFTFSISNSLRLCWNARVWLPSSICLRSWNWNSISFSSASMSESGESNSVLP 60

Query: 61  LDDGGAKAEEAADVLVQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCS 120
           LDDGGAKAEEAADVLVQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCS
Sbjct: 61  LDDGGAKAEEAADVLVQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCS 120

Query: 121 PQNIDSMHKVSRRFVFNGSTLNLNNAVTLEVKGETQIVNLSEKLKANSIVHKLWVEQPEN 180
           PQNIDSMHKV                 TLEVKGETQIVNLSEKLKANSIVHKLWVEQPEN
Sbjct: 121 PQNIDSMHKV-----------------TLEVKGETQIVNLSEKLKANSIVHKLWVEQPEN 180

Query: 181 IPTCLASKPYPKSVVSPFFKKLKLCK 206
           IPTCLASKPYPKSVVSPFFKKLKLCK
Sbjct: 181 IPTCLASKPYPKSVVSPFFKKLKLCK 189

[Close]

BLAST of Cp4.1LG07g01980 vs. NCBI nr
Match: XP_023002512.1 (putative peptidyl-tRNA hydrolase PTRHD1 isoform X1 [Cucurbita maxima])

HSP 1 Score: 352 bits (904), Expect = 8.96e-122
Identity = 184/206 (89.32%), Postives = 185/206 (89.81%), Query Frame = 0


Query: 1   MASVISASRFTFSISNSARLCSNARVWPRSSLCLRSWNWNSISFSSASMSESGESNSVLP 60
           MASVISASRFTFSISNSARLCSNARVW  SS+CL SWNWNSISFSSASMSES ESNSVLP
Sbjct: 1   MASVISASRFTFSISNSARLCSNARVWLPSSICLLSWNWNSISFSSASMSESAESNSVLP 60

Query: 61  LDDGGAKAEEAADVLVQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCS 120
           LDDGGAKAEEAADVLVQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCS
Sbjct: 61  LDDGGAKAEEAADVLVQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCS 120

Query: 121 PQNIDSMHKVSRRFVFNGSTLNLNNAVTLEVKGETQIVNLSEKLKANSIVHKLWVEQPEN 180
           PQNIDSMHKV                 TLEVKGETQIVNLSEKLKANSIVHKLWVEQPEN
Sbjct: 121 PQNIDSMHKV-----------------TLEVKGETQIVNLSEKLKANSIVHKLWVEQPEN 180

Query: 181 IPTCLASKPYPKSVVSPFFKKLKLCK 206
           IPTCLASKPYPKSVVSPFFKKLKLCK
Sbjct: 181 IPTCLASKPYPKSVVSPFFKKLKLCK 189

[Close]

BLAST of Cp4.1LG07g01980 vs. NCBI nr
Match: KAG7020347.1 (putative peptidyl-tRNA hydrolase PTRHD1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 352 bits (902), Expect = 1.81e-121
Identity = 183/206 (88.83%), Postives = 186/206 (90.29%), Query Frame = 0


Query: 1   MASVISASRFTFSISNSARLCSNARVWPRSSLCLRSWNWNSISFSSASMSESGESNSVLP 60
           MASVISASRFTFSISNS+RLC NARVW  SS+CLRSWNWNSISFSSASMSESGES+SVLP
Sbjct: 1   MASVISASRFTFSISNSSRLCWNARVWLPSSICLRSWNWNSISFSSASMSESGESSSVLP 60

Query: 61  LDDGGAKAEEAADVLVQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCS 120
           LDDGGAKAEEAADVLVQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCS
Sbjct: 61  LDDGGAKAEEAADVLVQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCS 120

Query: 121 PQNIDSMHKVSRRFVFNGSTLNLNNAVTLEVKGETQIVNLSEKLKANSIVHKLWVEQPEN 180
           PQNIDSMHKV                 TLEVKGETQIVNLSEKLKANSIVHKLWVEQPEN
Sbjct: 121 PQNIDSMHKV-----------------TLEVKGETQIVNLSEKLKANSIVHKLWVEQPEN 180

Query: 181 IPTCLASKPYPKSVVSPFFKKLKLCK 206
           IPTCLASKPYPKSVVSPFFKKLKLCK
Sbjct: 181 IPTCLASKPYPKSVVSPFFKKLKLCK 189

[Close]

BLAST of Cp4.1LG07g01980 vs. NCBI nr
Match: XP_022951521.1 (putative peptidyl-tRNA hydrolase PTRHD1 isoform X2 [Cucurbita moschata])

HSP 1 Score: 348 bits (892), Expect = 5.63e-120
Identity = 182/204 (89.22%), Postives = 183/204 (89.71%), Query Frame = 0


Query: 1   MASVISASRFTFSISNSARLCSNARVWPRSSLCLRSWNWNSISFSSASMSESGESNSVLP 60
           MASVISASRFTFSISNS RLC NARVW  SS+CLRSWNWNSISFSSASMSESGESNSVLP
Sbjct: 1   MASVISASRFTFSISNSLRLCWNARVWLPSSICLRSWNWNSISFSSASMSESGESNSVLP 60

Query: 61  LDDGGAKAEEAADVLVQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCS 120
           LDDGGAKAEEAADVLVQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCS
Sbjct: 61  LDDGGAKAEEAADVLVQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCS 120

Query: 121 PQNIDSMHKVSRRFVFNGSTLNLNNAVTLEVKGETQIVNLSEKLKANSIVHKLWVEQPEN 180
           PQNIDSMHKV                 TLEVKGETQIVNLSEKLKANSIVHKLWVEQPEN
Sbjct: 121 PQNIDSMHKV-----------------TLEVKGETQIVNLSEKLKANSIVHKLWVEQPEN 180

Query: 181 IPTCLASKPYPKSVVSPFFKKLKL 204
           IPTCLASKPYPKSVVSPFFKKLKL
Sbjct: 181 IPTCLASKPYPKSVVSPFFKKLKL 187

[Close]

BLAST of Cp4.1LG07g01980 vs. NCBI nr
Match: XP_023002513.1 (putative peptidyl-tRNA hydrolase PTRHD1 isoform X2 [Cucurbita maxima])

HSP 1 Score: 347 bits (891), Expect = 8.00e-120
Identity = 182/204 (89.22%), Postives = 183/204 (89.71%), Query Frame = 0


Query: 1   MASVISASRFTFSISNSARLCSNARVWPRSSLCLRSWNWNSISFSSASMSESGESNSVLP 60
           MASVISASRFTFSISNSARLCSNARVW  SS+CL SWNWNSISFSSASMSES ESNSVLP
Sbjct: 1   MASVISASRFTFSISNSARLCSNARVWLPSSICLLSWNWNSISFSSASMSESAESNSVLP 60

Query: 61  LDDGGAKAEEAADVLVQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCS 120
           LDDGGAKAEEAADVLVQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCS
Sbjct: 61  LDDGGAKAEEAADVLVQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCS 120

Query: 121 PQNIDSMHKVSRRFVFNGSTLNLNNAVTLEVKGETQIVNLSEKLKANSIVHKLWVEQPEN 180
           PQNIDSMHKV                 TLEVKGETQIVNLSEKLKANSIVHKLWVEQPEN
Sbjct: 121 PQNIDSMHKV-----------------TLEVKGETQIVNLSEKLKANSIVHKLWVEQPEN 180

Query: 181 IPTCLASKPYPKSVVSPFFKKLKL 204
           IPTCLASKPYPKSVVSPFFKKLKL
Sbjct: 181 IPTCLASKPYPKSVVSPFFKKLKL 187

[Close]

BLAST of Cp4.1LG07g01980 vs. ExPASy TrEMBL
Match: A0A6J1GJ11 (Aminoacyl-tRNA hydrolase OS=Cucurbita moschata OX=3662 GN=LOC111454312 PE=4 SV=1)

HSP 1 Score: 353 bits (905), Expect = 3.05e-122
Identity = 184/206 (89.32%), Postives = 185/206 (89.81%), Query Frame = 0


Query: 1   MASVISASRFTFSISNSARLCSNARVWPRSSLCLRSWNWNSISFSSASMSESGESNSVLP 60
           MASVISASRFTFSISNS RLC NARVW  SS+CLRSWNWNSISFSSASMSESGESNSVLP
Sbjct: 1   MASVISASRFTFSISNSLRLCWNARVWLPSSICLRSWNWNSISFSSASMSESGESNSVLP 60

Query: 61  LDDGGAKAEEAADVLVQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCS 120
           LDDGGAKAEEAADVLVQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCS
Sbjct: 61  LDDGGAKAEEAADVLVQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCS 120

Query: 121 PQNIDSMHKVSRRFVFNGSTLNLNNAVTLEVKGETQIVNLSEKLKANSIVHKLWVEQPEN 180
           PQNIDSMHKV                 TLEVKGETQIVNLSEKLKANSIVHKLWVEQPEN
Sbjct: 121 PQNIDSMHKV-----------------TLEVKGETQIVNLSEKLKANSIVHKLWVEQPEN 180

Query: 181 IPTCLASKPYPKSVVSPFFKKLKLCK 206
           IPTCLASKPYPKSVVSPFFKKLKLCK
Sbjct: 181 IPTCLASKPYPKSVVSPFFKKLKLCK 189

[Close]

BLAST of Cp4.1LG07g01980 vs. ExPASy TrEMBL
Match: A0A6J1KJQ6 (Aminoacyl-tRNA hydrolase OS=Cucurbita maxima OX=3661 GN=LOC111496331 PE=4 SV=1)

HSP 1 Score: 352 bits (904), Expect = 4.34e-122
Identity = 184/206 (89.32%), Postives = 185/206 (89.81%), Query Frame = 0


Query: 1   MASVISASRFTFSISNSARLCSNARVWPRSSLCLRSWNWNSISFSSASMSESGESNSVLP 60
           MASVISASRFTFSISNSARLCSNARVW  SS+CL SWNWNSISFSSASMSES ESNSVLP
Sbjct: 1   MASVISASRFTFSISNSARLCSNARVWLPSSICLLSWNWNSISFSSASMSESAESNSVLP 60

Query: 61  LDDGGAKAEEAADVLVQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCS 120
           LDDGGAKAEEAADVLVQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCS
Sbjct: 61  LDDGGAKAEEAADVLVQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCS 120

Query: 121 PQNIDSMHKVSRRFVFNGSTLNLNNAVTLEVKGETQIVNLSEKLKANSIVHKLWVEQPEN 180
           PQNIDSMHKV                 TLEVKGETQIVNLSEKLKANSIVHKLWVEQPEN
Sbjct: 121 PQNIDSMHKV-----------------TLEVKGETQIVNLSEKLKANSIVHKLWVEQPEN 180

Query: 181 IPTCLASKPYPKSVVSPFFKKLKLCK 206
           IPTCLASKPYPKSVVSPFFKKLKLCK
Sbjct: 181 IPTCLASKPYPKSVVSPFFKKLKLCK 189

[Close]

BLAST of Cp4.1LG07g01980 vs. ExPASy TrEMBL
Match: A0A6J1GHT5 (Aminoacyl-tRNA hydrolase OS=Cucurbita moschata OX=3662 GN=LOC111454312 PE=4 SV=1)

HSP 1 Score: 348 bits (892), Expect = 2.73e-120
Identity = 182/204 (89.22%), Postives = 183/204 (89.71%), Query Frame = 0


Query: 1   MASVISASRFTFSISNSARLCSNARVWPRSSLCLRSWNWNSISFSSASMSESGESNSVLP 60
           MASVISASRFTFSISNS RLC NARVW  SS+CLRSWNWNSISFSSASMSESGESNSVLP
Sbjct: 1   MASVISASRFTFSISNSLRLCWNARVWLPSSICLRSWNWNSISFSSASMSESGESNSVLP 60

Query: 61  LDDGGAKAEEAADVLVQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCS 120
           LDDGGAKAEEAADVLVQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCS
Sbjct: 61  LDDGGAKAEEAADVLVQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCS 120

Query: 121 PQNIDSMHKVSRRFVFNGSTLNLNNAVTLEVKGETQIVNLSEKLKANSIVHKLWVEQPEN 180
           PQNIDSMHKV                 TLEVKGETQIVNLSEKLKANSIVHKLWVEQPEN
Sbjct: 121 PQNIDSMHKV-----------------TLEVKGETQIVNLSEKLKANSIVHKLWVEQPEN 180

Query: 181 IPTCLASKPYPKSVVSPFFKKLKL 204
           IPTCLASKPYPKSVVSPFFKKLKL
Sbjct: 181 IPTCLASKPYPKSVVSPFFKKLKL 187

[Close]

BLAST of Cp4.1LG07g01980 vs. ExPASy TrEMBL
Match: A0A6J1KTS0 (Aminoacyl-tRNA hydrolase OS=Cucurbita maxima OX=3661 GN=LOC111496331 PE=4 SV=1)

HSP 1 Score: 347 bits (891), Expect = 3.87e-120
Identity = 182/204 (89.22%), Postives = 183/204 (89.71%), Query Frame = 0


Query: 1   MASVISASRFTFSISNSARLCSNARVWPRSSLCLRSWNWNSISFSSASMSESGESNSVLP 60
           MASVISASRFTFSISNSARLCSNARVW  SS+CL SWNWNSISFSSASMSES ESNSVLP
Sbjct: 1   MASVISASRFTFSISNSARLCSNARVWLPSSICLLSWNWNSISFSSASMSESAESNSVLP 60

Query: 61  LDDGGAKAEEAADVLVQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCS 120
           LDDGGAKAEEAADVLVQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCS
Sbjct: 61  LDDGGAKAEEAADVLVQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCS 120

Query: 121 PQNIDSMHKVSRRFVFNGSTLNLNNAVTLEVKGETQIVNLSEKLKANSIVHKLWVEQPEN 180
           PQNIDSMHKV                 TLEVKGETQIVNLSEKLKANSIVHKLWVEQPEN
Sbjct: 121 PQNIDSMHKV-----------------TLEVKGETQIVNLSEKLKANSIVHKLWVEQPEN 180

Query: 181 IPTCLASKPYPKSVVSPFFKKLKL 204
           IPTCLASKPYPKSVVSPFFKKLKL
Sbjct: 181 IPTCLASKPYPKSVVSPFFKKLKL 187

[Close]

BLAST of Cp4.1LG07g01980 vs. ExPASy TrEMBL
Match: A0A6J1K304 (Aminoacyl-tRNA hydrolase OS=Cucurbita maxima OX=3661 GN=LOC111491924 PE=4 SV=1)

HSP 1 Score: 287 bits (734), Expect = 3.32e-96
Identity = 159/208 (76.44%), Postives = 165/208 (79.33%), Query Frame = 0


Query: 1   MASVISASRFTFSISNSARLCS--NARVWPRSSLCLRSWNWNSISFSSASMSESGESNSV 60
           M SVISASRFTFSIS S +LCS   +RVWP SSL LRS N NS  FSSASMSES ESNS 
Sbjct: 1   MISVISASRFTFSISKSTKLCSCSRSRVWPSSSLSLRSRNRNSNLFSSASMSESAESNSA 60

Query: 61  LPLDDGGAKAEEAADVLVQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSEY 120
            P DD     E+AADVL+QYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDP TSEY
Sbjct: 61  PPPDD---IVEKAADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPQTSEY 120

Query: 121 CSPQNIDSMHKVSRRFVFNGSTLNLNNAVTLEVKGETQIVNLSEKLKANSIVHKLWVEQP 180
           CSP NIDSMHKV                 TLEVKGETQIVNLSEKLK NSI HKLW+EQP
Sbjct: 121 CSPHNIDSMHKV-----------------TLEVKGETQIVNLSEKLKENSIAHKLWIEQP 180

Query: 181 ENIPTCLASKPYPKSVVSPFFKKLKLCK 206
           ENIPTCLA+KPYPKSVVS FFKKLKLCK
Sbjct: 181 ENIPTCLATKPYPKSVVSAFFKKLKLCK 188

[Close]

BLAST of Cp4.1LG07g01980 vs. TAIR 10
Match: AT5G10700.1 (Peptidyl-tRNA hydrolase II (PTH2) family protein )

HSP 1 Score: 196.8 bits (499), Expect = 1.7e-50
Identity = 115/207 (55.56%), Postives = 142/207 (68.60%), Query Frame = 0


Query: 1   MASVISASRFTFSISNSARLCSNARVWPRSSLCLRSWNWNSISFSSASMS-ESGESNSVL 60
           MA+ + ++ F F I  + RL + A         +R  ++   + +S SMS ++GE ++V+
Sbjct: 1   MATAVLSAAFRFPIV-TRRLSAPAPRIRFYHSTIRFAHFRRFTTASPSMSQQTGEIDAVV 60

Query: 61  PLDDGGAKAEEAADVLVQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSEYC 120
                 + AE+  DV+VQYVVLRRDLIDSWPLGSVVTQGCHASV+AIW  KDDP T +YC
Sbjct: 61  ----DASSAEKPDDVVVQYVVLRRDLIDSWPLGSVVTQGCHASVAAIWSFKDDPVTLQYC 120

Query: 121 SPQNIDSMHKVSRRFVFNGSTLNLNNAVTLEVKGETQIVNLSEKLKANSIVHKLWVEQPE 180
            PQ+IDSMHK                 VTLEVKGETQ++NLSEKLK   I HKLW+EQPE
Sbjct: 121 DPQHIDSMHK-----------------VTLEVKGETQMMNLSEKLKLGGISHKLWMEQPE 180

Query: 181 NIPTCLASKPYPKSVVSPFFKKLKLCK 207
           NIPTC+A+KPYPKS VS FFKKLKLCK
Sbjct: 181 NIPTCIATKPYPKSQVSSFFKKLKLCK 185

The following BLAST results are available for this feature:

BLAST of Cp4.1LG07g01980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3SZ85	1.2e-24	44.85	Putative peptidyl-tRNA hydrolase PTRHD1 OS=Bos taurus OX=9913 GN=PTRHD1 PE=2 SV=...	[more]
D3Z4S3	1.4e-22	42.65	Putative peptidyl-tRNA hydrolase PTRHD1 OS=Mus musculus OX=10090 GN=Ptrhd1 PE=1 ...	[more]
Q6GMV3	4.2e-22	42.65	Putative peptidyl-tRNA hydrolase PTRHD1 OS=Homo sapiens OX=9606 GN=PTRHD1 PE=1 S...	[more]

BLAST of Cp4.1LG07g01980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022951520.1	6.31e-122	89.32	putative peptidyl-tRNA hydrolase PTRHD1 isoform X1 [Cucurbita moschata]	[more]
XP_023002512.1	8.96e-122	89.32	putative peptidyl-tRNA hydrolase PTRHD1 isoform X1 [Cucurbita maxima]	[more]
KAG7020347.1	1.81e-121	88.83	putative peptidyl-tRNA hydrolase PTRHD1, partial [Cucurbita argyrosperma subsp. ...	[more]
XP_022951521.1	5.63e-120	89.22	putative peptidyl-tRNA hydrolase PTRHD1 isoform X2 [Cucurbita moschata]	[more]
XP_023002513.1	8.00e-120	89.22	putative peptidyl-tRNA hydrolase PTRHD1 isoform X2 [Cucurbita maxima]	[more]

BLAST of Cp4.1LG07g01980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GJ11	3.05e-122	89.32	Aminoacyl-tRNA hydrolase OS=Cucurbita moschata OX=3662 GN=LOC111454312 PE=4 SV=1	[more]
A0A6J1KJQ6	4.34e-122	89.32	Aminoacyl-tRNA hydrolase OS=Cucurbita maxima OX=3661 GN=LOC111496331 PE=4 SV=1	[more]
A0A6J1GHT5	2.73e-120	89.22	Aminoacyl-tRNA hydrolase OS=Cucurbita moschata OX=3662 GN=LOC111454312 PE=4 SV=1	[more]
A0A6J1KTS0	3.87e-120	89.22	Aminoacyl-tRNA hydrolase OS=Cucurbita maxima OX=3661 GN=LOC111496331 PE=4 SV=1	[more]
A0A6J1K304	3.32e-96	76.44	Aminoacyl-tRNA hydrolase OS=Cucurbita maxima OX=3661 GN=LOC111491924 PE=4 SV=1	[more]

BLAST of Cp4.1LG07g01980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G10700.1	1.7e-50	55.56	Peptidyl-tRNA hydrolase II (PTH2) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002833	Peptidyl-tRNA hydrolase, PTH2	PFAM	PF01981	PTH2	coord: 76..204 e-value: 8.7E-20 score: 71.2
IPR023476	Peptidyl-tRNA hydrolase II domain superfamily	GENE3D	3.40.1490.10	Bit1	coord: 75..206 e-value: 5.3E-14 score: 54.1
IPR023476	Peptidyl-tRNA hydrolase II domain superfamily	SUPERFAMILY	102462	Peptidyl-tRNA hydrolase II	coord: 75..205
IPR042237	Putative peptidyl-tRNA hydrolase PTRHD1	PANTHER	PTHR46194	PEPTIDYL-TRNA HYDROLASE PTRHD1-RELATED	coord: 57..206
None	No IPR available	CDD	cd02429	PTH2_like	coord: 75..205 e-value: 1.29653E-62 score: 188.382

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG07g01980.1	Cp4.1LG07g01980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0004045	aminoacyl-tRNA hydrolase activity