Cp4.1LG07g01350 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG07g01350
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	serine/arginine-rich splicing factor SC35-like
Location	Cp4.1LG07: 730944 .. 734683 (-)
RNA-Seq Expression	Cp4.1LG07g01350
Synteny	Cp4.1LG07g01350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCATTTTTTATATTTTAGTTAAATTTAGGGACCTTGGAAGAAATACACAAAATTGTTGAAATTTCTTCCACCAGAGACCTAGTTGAGCCCTGAATCCGCCGCTGACGCTGGTCGCCACTCTCTCCATAGCTGAAATCGATCAGTTGCAGAGAGGAATGTCGCACTTTGGAAGATCGGGTCCTCCCGATATCAGAGATACTTATTCGCTTCTCGTCCTCAACATCACATTCCGTATCTCCGATCCCTAATTTTCTCTTATCTTCTTTCTTTATCTTCAATCTCTTACCATTTCTTTGTTTTTCAGGAACCACCGCCGACGATCTTTACCCGCTTTTCGACAAGTATGGAAAAGTCGTCGACGTCTTCATTCCCAGAGACCGCAGGTTTCTTTCTCTCTTTTGCGTTTAATCTTTTCTTTTGATGAATTTGAGTGCGTAATTGGTTGGTTTTGATTTCTGTTAGGACTGGGGATTCTCGGGGATTTGCGTTTGTTCGATACAAGTATGCGGACGAAGCACAGAAGGCTATTGACAAGCTTGACGGTTAGCTTCAGTTCGACCAAAAAATCACGTTAAGCTTGAGCTTTTGGAGTTTAAATTTGATGCTGTTTATATGCGAAACCAATTTGGGTTTCTACTCTGTTCTCTAGGGCGAATGTTGGATGGTAGAGAAATTATGGTTCAATTCGCTAAGTACGGTCCCAATGCTGAGAAAATGTGAGTTTACTATAAATATTTTAAACGCTTTTGGATGTAATTTGTTACACTTCACAGCTGCACAAGAACGTGTTTCTTGATTCTTGAATTTTGGTTTGTATCAGTCGCAAGGGGAAGGTGATGGAGTCATCATCATCGATGACAAGGGGCAGGTCAAGGAGCCGCAGTCCACGTCCAAGGTGAGAGTTCTAGTCTAAATGCATCTGAACTTGGAGTTCGAATCAGAGCTCTGGTGAAGAAATTTATATTTTCTCGAGGTAATTATCCTCGTTTACTTGCGATTCAAACGAAAAATTTCAATGTACCCTTCCGCATAGTCATGTAGAGTGAAGGAGGTAATAATTTTTATCTGGTTGTGAATGCAATTTCTTTAGTAGAATTGGTGTGTATGGTACACCTAGAATTAGCTATGTGTGTTAATCTAGTTAATGGTAAAGTTTAACACAATGATTAAGGACACAATTTCTTGACTTCACAAAAAGTGTGGATGATTAAAAGTCTTATGCTTGAAGAAGTATATTGAAAATCATGAATTTGTACACTTTTTTCTTTTTCTGGGGGTCACCAATCGTTATATGAAACTACCTTAAATATGTTACTAACTTGTATTTGGTTAACTCGTTATGACAAAATTTTATGGACAAGGGACGAATGGTTATAAGGCTTGTCTTAAATTGAGTTTCTTATCATTACAGGCAGTTGATTGTTATCTCATTATTTCCAGCTGGTTACTCTACCTTCTCTTATGGATTGCAAAAATATTTCAGGCACCGTGATGACCACAGGGATAGGGATTACAGGAGAAGAAGCCGCAGTAGAAGCCGGGAGAGATATGATCGTGATAGACCCCACAGAAGTGAGAGAGAACGCCATAGAAGTAGGAGTTGTAGTGCTAGTCCTGACCGTAATAAAGATCGAAGGAGAGAAAGAGATGATGAAAGGCGTAGTGCAAGCCGCTCCGATAGAAGGTATATGAATACTTTCTTTCTTTTATTGCTTTTAAGGGATATCGTATTTAGGCGTTCTAAGGTTGGCATGGGTTCTAGTTAGTTTCCATCCTTTTATGGTTTGCAACACTTACTCTAGTAGTTGTGAGATAGGAGTATTTGAAGTCTTGTTATTTACTTACATTTGGAGGGGATGGGTGGAACCATAGAGGTGCTCATTTTATTCTACCAGGTTCGGCAAAGAGAGAGGGGTATGTTGGCCAAACGTTACATATTTTTTAGAACATGGCTTATGAAAATCACCCTGCGTTTGAAATATTCTCCATAAGTCCATAATTCTAATAAGAGAACGAAAAATAGACCTCTTTGAAGAACACACTCAAGAGAAACAAGCAAAAGCACAGTTATTCAGCCATCTTACCCTGAACTTTCGTTTGAAAGATGGAAAAAACTGTCTGAAAATAGCTTTTGAACAACTCCTCTTAACACATTCACAATCAATACACCAACAGTGATCTAGTAATACAATGGAAAATATTCCGGAGATCGATCCATTAGGGAAAAAAAACTCTCTTCTTATTCTCAAAAAACTTAGATGTAGCAGATTTTTAGGTAATAAAAGGTTCAAATATGAATGAGACTATCTGAAATTTCCACATATTGTAAACTCGTTCCCTGCTAAGAACATGCTCCTATTTCACTTCGGTTGGTTAGACGAACAGAAGTAAAATAATCCAGAGAAACATGAGAAATCGACCAACATGTATTGCTGAATCAAAGGAGTTACAACATAGGGTTCACTATGTGTCAAACCAAAGATACCTAGTCATTTATGGTGGTGAAGAACAAGAACAAAACCCAACTGAGGAATTGATCATGCATGCATTGAGAGTGATTTTTGTGTGTTATCGCTATGAATTTTAGCATTGGCAGCGCACAATTGAGTAATTCTGCTCACATATTTACAAATATCTTGTTAGAGCTTTAATACTTTATAAAGAATTTTTCCATTGTAACGTCTCACACTCCAAAATCAATGATCTAGCATTACTAGGAGTTTTATTTCAAGTTTCTTGAGCATATCCAAACGCACTTTTCATTTAATTTTCTGGACATCTCACACTGCCAAAACCATGCAAGGTCCTCATCCTTCATTCACTGCAATTCTTATAATTCTTTTCGGTCTGCACTCTAATTGGAAATGACTTTATACTGAAGCATGTCACCCACCCGACATTCCCCTGATACTCGGAGAAGCATTTCTCCACGTAGGACACCATCGAGGGGTAGAAGCGATGATGAACATTCACCTCAGAGAGAGAATGGCTCACTAGATGATAAGCCAGTCGATTCTCGTAGCCCATCTCCTGCTAAATCCGATGCCGATGTAAGCTAACTAATCTGCCATTCTTATTGCCAATGATTCTTTAAAAAAAAAAAAGTGCTGGTCTGTCTAGTGATATCTATAATTTGTGCCTGCAGGAGTGATCTATAAGTGCCATAGGGATAATATATGAAAGCAAGGCATTGGATTTTAGAAATTCTTTATGCATTTTATGAACAATCATGGCATCCCAGGGGGATATTTTACACAAGTGTATCTGCCTTTAGACTCCCAAGGACTGTTGGATGCCTAGATAGACGTGTAGGATCTTGTTCTTAATTAGTTTTGAGTTATTTTTCCCTTTTTTCCCTTTAGATTTCATTTTAGTATCTGTACTATTTACATGCAAAATATGAGTCTTCCCAGTGTTTGGTTTTGACCTCCTTAGATGTATAATGAATTGATTCTTCTGCCTTGTATCTTGTCTTTTTGGAACCTATTCACCACATTTTGTAGCTAATATACTTTCTAACATGGTTGGGTTTATTGATTTAGATGCTCTGTGGATGAATTTGGTCATTGAGTGTGGTTTACACAAATGTTTACTATGAGCAGGTACAAAGAAAAGGCCTTTGATATATCTTTTTGATAGTTATTTCACTCATGGTTGAGAACTACAAGTTTAGAACTGTTAGACTTGTATTTATTTAGTGATCTTTTACTTTAAAAGGTTTTAAACTAGTCTTAGTTTT

mRNA sequence

GCCATTTTTTATATTTTAGTTAAATTTAGGGACCTTGGAAGAAATACACAAAATTGTTGAAATTTCTTCCACCAGAGACCTAGTTGAGCCCTGAATCCGCCGCTGACGCTGGTCGCCACTCTCTCCATAGCTGAAATCGATCAGTTGCAGAGAGGAATGTCGCACTTTGGAAGATCGGGTCCTCCCGATATCAGAGATACTTATTCGCTTCTCGTCCTCAACATCACATTCCGAACCACCGCCGACGATCTTTACCCGCTTTTCGACAAGTATGGAAAAGTCGTCGACGTCTTCATTCCCAGAGACCGCAGGACTGGGGATTCTCGGGGATTTGCGTTTGTTCGATACAAGTATGCGGACGAAGCACAGAAGGCTATTGACAAGCTTGACGGGCGAATGTTGGATGGTAGAGAAATTATGGTTCAATTCGCTAAGTACGGTCCCAATGCTGAGAAAATTCGCAAGGGGAAGGTGATGGAGTCATCATCATCGATGACAAGGGGCAGGTCAAGGAGCCGCAGTCCACGTCCAAGGCAGTTGATTGTTATCTCATTATTTCCAGCTGGTTACTCTACCTTCTCTTATGGATTGCAAAAATATTTCAGGCACCGTGATGACCACAGGGATAGGGATTACAGGAGAAGAAGCCGCAGTAGAAGCCGGGAGAGATATGATCGTGATAGACCCCACAGAAGTGAGAGAGAACGCCATAGAAGTAGGAGTTGTAGTGCTAGTCCTGACCGTAATAAAGATCGAAGGAGAGAAAGAGATGATGAAAGGCGTAGTGCAAGCCGCTCCGATAGAAGCATGTCACCCACCCGACATTCCCCTGATACTCGGAGAAGCATTTCTCCACGTAGGACACCATCGAGGGGTAGAAGCGATGATGAACATTCACCTCAGAGAGAGAATGGCTCACTAGATGATAAGCCAGTCGATTCTCGTAGCCCATCTCCTGCTAAATCCGATGCCGATGAGTGATCTATAAGTGCCATAGGGATAATATATGAAAGCAAGGCATTGGATTTTAGAAATTCTTTATGCATTTTATGAACAATCATGGCATCCCAGGGGGATATTTTACACAAGTGTATCTGCCTTTAGACTCCCAAGGACTGTTGGATGCCTAGATAGACGTGTAGGATCTTGTTCTTAATTAGTTTTGAGTTATTTTTCCCTTTTTTCCCTTTAGATTTCATTTTAGTATCTGTACTATTTACATGCAAAATATGAGTCTTCCCAGTGTTTGGTTTTGACCTCCTTAGATGTATAATGAATTGATTCTTCTGCCTTGTATCTTGTCTTTTTGGAACCTATTCACCACATTTTGTAGCTAATATACTTTCTAACATGGTTGGGTTTATTGATTTAGATGCTCTGTGGATGAATTTGGTCATTGAGTGTGGTTTACACAAATGTTTACTATGAGCAGGTACAAAGAAAAGGCCTTTGATATATCTTTTTGATAGTTATTTCACTCATGGTTGAGAACTACAAGTTTAGAACTGTTAGACTTGTATTTATTTAGTGATCTTTTACTTTAAAAGGTTTTAAACTAGTCTTAGTTTT

Coding sequence (CDS)

ATGTCGCACTTTGGAAGATCGGGTCCTCCCGATATCAGAGATACTTATTCGCTTCTCGTCCTCAACATCACATTCCGAACCACCGCCGACGATCTTTACCCGCTTTTCGACAAGTATGGAAAAGTCGTCGACGTCTTCATTCCCAGAGACCGCAGGACTGGGGATTCTCGGGGATTTGCGTTTGTTCGATACAAGTATGCGGACGAAGCACAGAAGGCTATTGACAAGCTTGACGGGCGAATGTTGGATGGTAGAGAAATTATGGTTCAATTCGCTAAGTACGGTCCCAATGCTGAGAAAATTCGCAAGGGGAAGGTGATGGAGTCATCATCATCGATGACAAGGGGCAGGTCAAGGAGCCGCAGTCCACGTCCAAGGCAGTTGATTGTTATCTCATTATTTCCAGCTGGTTACTCTACCTTCTCTTATGGATTGCAAAAATATTTCAGGCACCGTGATGACCACAGGGATAGGGATTACAGGAGAAGAAGCCGCAGTAGAAGCCGGGAGAGATATGATCGTGATAGACCCCACAGAAGTGAGAGAGAACGCCATAGAAGTAGGAGTTGTAGTGCTAGTCCTGACCGTAATAAAGATCGAAGGAGAGAAAGAGATGATGAAAGGCGTAGTGCAAGCCGCTCCGATAGAAGCATGTCACCCACCCGACATTCCCCTGATACTCGGAGAAGCATTTCTCCACGTAGGACACCATCGAGGGGTAGAAGCGATGATGAACATTCACCTCAGAGAGAGAATGGCTCACTAGATGATAAGCCAGTCGATTCTCGTAGCCCATCTCCTGCTAAATCCGATGCCGATGAGTGA

Protein sequence

MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSMTRGRSRSRSPRPRQLIVISLFPAGYSTFSYGLQKYFRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERHRSRSCSASPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTPSRGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE

Homology

[Close]

BLAST of Cp4.1LG07g01350 vs. ExPASy Swiss-Prot
Match: Q9FMG4 (Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana OX=3702 GN=SC35 PE=1 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 4.2e-62
Identity = 164/273 (60.07%), Postives = 188/273 (68.86%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSMTRGRSRS 120
           FVRYKY DEA KA+++LDGR++DGREI VQFAKYGPNAEKI KG+V+E      R RSRS
Sbjct: 61  FVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRS 120

Query: 121 --RSPRPRQLIVISLFPAGYSTFSYGLQKYFRHRDDHRDRDYRRRSRSRSRERYDRDRPH 180
             RS  PR+    S  P    +         R RDD+R++DYR+RSRSRS +R  R+R  
Sbjct: 121 PRRSRSPRR----SRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRSYDR--RERHE 180

Query: 181 RSERE-RHRSRSCSASPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTP 240
             +R+ R R+RS SASPD  +  R   D+E RS SRS  S SP R SP   RS SP++T 
Sbjct: 181 EKDRDHRRRTRSRSASPDEKRRVRGRYDNESRSHSRS-LSASPARRSP---RSSSPQKT- 240

Query: 241 SRGRSDDEHSPQRENGSLDDKPVDSRSPSPAKS 271
                    SP RE     DK  + RSPSP +S
Sbjct: 241 ---------SPAREVS--PDKRSNERSPSPRRS 251

[Close]

BLAST of Cp4.1LG07g01350 vs. ExPASy Swiss-Prot
Match: P30352 (Serine/arginine-rich splicing factor 2 OS=Gallus gallus OX=9031 GN=SRSF2 PE=2 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 6.0e-24
Identity = 104/254 (40.94%), Postives = 133/254 (52.36%), Query Frame = 0


Query: 4   FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKIRKGKVMESSSSMTRGRSRSR 123
           +    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   R+G       S   GR RSR
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGSSGYGR-RSR 122

Query: 124 SPRPRQLIVISLFPAGYSTFSYGLQKYFRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSE 183
           SPR R+                        R   R R    RSRSRSR RY R +     
Sbjct: 123 SPRRRR------------------------RSRSRSRS---RSRSRSRSRYSRSKSRSRT 182

Query: 184 RERHRSRSCSASPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTPSRGR 243
           R R RS S S S  R+K +        RS SRS RS S +R  P T    S R + SR R
Sbjct: 183 RSRSRSTSKSRSARRSKSK---SSSVSRSRSRS-RSRSRSRSPPPT----SKRESNSRSR 219

Query: 244 SDDEHSPQRENGSL 256
           S        E G++
Sbjct: 243 SKSPPKSPEEEGAV 219

[Close]

BLAST of Cp4.1LG07g01350 vs. ExPASy Swiss-Prot
Match: Q3MHR5 (Serine/arginine-rich splicing factor 2 OS=Bos taurus OX=9913 GN=SRSF2 PE=2 SV=3)

HSP 1 Score: 110.9 bits (276), Expect = 2.3e-23
Identity = 102/254 (40.16%), Postives = 132/254 (51.97%), Query Frame = 0


Query: 4   FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKIRKGKVMESSSSMTRGRSRSR 123
           +    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   R+G           GR RSR
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGR-RSR 122

Query: 124 SPRPRQLIVISLFPAGYSTFSYGLQKYFRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSE 183
           SPR R+                        R   R R    RSRSRSR RY R +     
Sbjct: 123 SPRRRR------------------------RSRSRSRS---RSRSRSRSRYSRSKSRSRT 182

Query: 184 RERHRSRSCSASPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTPSRGR 243
           R R RS S S S  R+K +        RS SRS RS S +R  P     +S R + SR R
Sbjct: 183 RSRSRSTSKSRSARRSKSK---SSSVSRSRSRS-RSRSRSRSPP----PVSKRESKSRSR 219

Query: 244 SDDEHSPQRENGSL 256
           S        E G++
Sbjct: 243 SKSPPKSPEEEGAV 219

[Close]

BLAST of Cp4.1LG07g01350 vs. ExPASy Swiss-Prot
Match: Q01130 (Serine/arginine-rich splicing factor 2 OS=Homo sapiens OX=9606 GN=SRSF2 PE=1 SV=4)

HSP 1 Score: 110.9 bits (276), Expect = 2.3e-23
Identity = 102/254 (40.16%), Postives = 132/254 (51.97%), Query Frame = 0


Query: 4   FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKIRKGKVMESSSSMTRGRSRSR 123
           +    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   R+G           GR RSR
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGR-RSR 122

Query: 124 SPRPRQLIVISLFPAGYSTFSYGLQKYFRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSE 183
           SPR R+                        R   R R    RSRSRSR RY R +     
Sbjct: 123 SPRRRR------------------------RSRSRSRS---RSRSRSRSRYSRSKSRSRT 182

Query: 184 RERHRSRSCSASPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTPSRGR 243
           R R RS S S S  R+K +        RS SRS RS S +R  P     +S R + SR R
Sbjct: 183 RSRSRSTSKSRSARRSKSK---SSSVSRSRSRS-RSRSRSRSPP----PVSKRESKSRSR 219

Query: 244 SDDEHSPQRENGSL 256
           S        E G++
Sbjct: 243 SKSPPKSPEEEGAV 219

[Close]

BLAST of Cp4.1LG07g01350 vs. ExPASy Swiss-Prot
Match: Q62093 (Serine/arginine-rich splicing factor 2 OS=Mus musculus OX=10090 GN=Srsf2 PE=1 SV=4)

HSP 1 Score: 110.9 bits (276), Expect = 2.3e-23
Identity = 102/254 (40.16%), Postives = 132/254 (51.97%), Query Frame = 0


Query: 4   FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKIRKGKVMESSSSMTRGRSRSR 123
           +    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   R+G           GR RSR
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGR-RSR 122

Query: 124 SPRPRQLIVISLFPAGYSTFSYGLQKYFRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSE 183
           SPR R+                        R   R R    RSRSRSR RY R +     
Sbjct: 123 SPRRRR------------------------RSRSRSRS---RSRSRSRSRYSRSKSRSRT 182

Query: 184 RERHRSRSCSASPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTPSRGR 243
           R R RS S S S  R+K +        RS SRS RS S +R  P     +S R + SR R
Sbjct: 183 RSRSRSTSKSRSARRSKSK---SSSVSRSRSRS-RSRSRSRSPP----PVSKRESKSRSR 219

Query: 244 SDDEHSPQRENGSL 256
           S        E G++
Sbjct: 243 SKSPPKSPEEEGAV 219

[Close]

BLAST of Cp4.1LG07g01350 vs. NCBI nr
Match: XP_023538162.1 (serine/arginine-rich splicing factor SC35-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 449 bits (1156), Expect = 4.76e-158
Identity = 250/274 (91.24%), Postives = 250/274 (91.24%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSMTRGRSRS 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSMTRGRSRS
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSMTRGRSRS 120

Query: 121 RSPRPRQLIVISLFPAGYSTFSYGLQKYFRHRDDHRDRDYRRRSRSRSRERYDRDRPHRS 180
           RSPRPR                        HRDDHRDRDYRRRSRSRSRERYDRDRPHRS
Sbjct: 121 RSPRPR------------------------HRDDHRDRDYRRRSRSRSRERYDRDRPHRS 180

Query: 181 ERERHRSRSCSASPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTPSRG 240
           ERERHRSRSCSASPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTPSRG
Sbjct: 181 ERERHRSRSCSASPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTPSRG 240

Query: 241 RSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE 274
           RSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE
Sbjct: 241 RSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE 250

[Close]

BLAST of Cp4.1LG07g01350 vs. NCBI nr
Match: XP_023538161.1 (serine/arginine-rich splicing factor SC35-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 448 bits (1152), Expect = 2.01e-157
Identity = 249/273 (91.21%), Postives = 249/273 (91.21%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSMTRGRSRS 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSMTRGRSRS
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSMTRGRSRS 120

Query: 121 RSPRPRQLIVISLFPAGYSTFSYGLQKYFRHRDDHRDRDYRRRSRSRSRERYDRDRPHRS 180
           RSPRPR                        HRDDHRDRDYRRRSRSRSRERYDRDRPHRS
Sbjct: 121 RSPRPR------------------------HRDDHRDRDYRRRSRSRSRERYDRDRPHRS 180

Query: 181 ERERHRSRSCSASPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTPSRG 240
           ERERHRSRSCSASPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTPSRG
Sbjct: 181 ERERHRSRSCSASPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTPSRG 240

Query: 241 RSDDEHSPQRENGSLDDKPVDSRSPSPAKSDAD 273
           RSDDEHSPQRENGSLDDKPVDSRSPSPAKSDAD
Sbjct: 241 RSDDEHSPQRENGSLDDKPVDSRSPSPAKSDAD 249

[Close]

BLAST of Cp4.1LG07g01350 vs. NCBI nr
Match: XP_022952013.1 (serine/arginine-rich splicing factor SC35-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 435 bits (1119), Expect = 2.06e-152
Identity = 245/274 (89.42%), Postives = 247/274 (90.15%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSMTRGRSRS 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSS TRGRSRS
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRS 120

Query: 121 RSPRPRQLIVISLFPAGYSTFSYGLQKYFRHRDDHRDRDYRRRSRSRSRERYDRDRPHRS 180
           RSPRPR                        HRDD+RDRDYRRRSRSRSRERYDRDRPHRS
Sbjct: 121 RSPRPR------------------------HRDDYRDRDYRRRSRSRSRERYDRDRPHRS 180

Query: 181 ERERHRSRSCSASPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTPSRG 240
           ERERHRSRS SASPD NKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTPSRG
Sbjct: 181 ERERHRSRSRSASPDCNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTPSRG 240

Query: 241 RSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE 274
           RSDDEHSPQRENGSLDDKPV+SRSPSPAKSDADE
Sbjct: 241 RSDDEHSPQRENGSLDDKPVNSRSPSPAKSDADE 250

[Close]

BLAST of Cp4.1LG07g01350 vs. NCBI nr
Match: XP_023002672.1 (serine/arginine-rich splicing factor SC35-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 435 bits (1118), Expect = 2.93e-152
Identity = 244/274 (89.05%), Postives = 246/274 (89.78%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSMTRGRSRS 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSS TRGRSRS
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRS 120

Query: 121 RSPRPRQLIVISLFPAGYSTFSYGLQKYFRHRDDHRDRDYRRRSRSRSRERYDRDRPHRS 180
           RSPRPR                        HRDD+RDRDYRRRSRSRSRERYDRDRPHRS
Sbjct: 121 RSPRPR------------------------HRDDYRDRDYRRRSRSRSRERYDRDRPHRS 180

Query: 181 ERERHRSRSCSASPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTPSRG 240
           ERE HRSRS SASPDRNKDRRRERDDER SASRS+RSMSPTRHSPDTRRSISPRRTPSRG
Sbjct: 181 EREHHRSRSRSASPDRNKDRRRERDDERHSASRSERSMSPTRHSPDTRRSISPRRTPSRG 240

Query: 241 RSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE 274
           RSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE
Sbjct: 241 RSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE 250

[Close]

BLAST of Cp4.1LG07g01350 vs. NCBI nr
Match: XP_022952012.1 (serine/arginine-rich splicing factor SC35-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 434 bits (1115), Expect = 8.70e-152
Identity = 244/273 (89.38%), Postives = 246/273 (90.11%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSMTRGRSRS 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSS TRGRSRS
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRS 120

Query: 121 RSPRPRQLIVISLFPAGYSTFSYGLQKYFRHRDDHRDRDYRRRSRSRSRERYDRDRPHRS 180
           RSPRPR                        HRDD+RDRDYRRRSRSRSRERYDRDRPHRS
Sbjct: 121 RSPRPR------------------------HRDDYRDRDYRRRSRSRSRERYDRDRPHRS 180

Query: 181 ERERHRSRSCSASPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTPSRG 240
           ERERHRSRS SASPD NKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTPSRG
Sbjct: 181 ERERHRSRSRSASPDCNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTPSRG 240

Query: 241 RSDDEHSPQRENGSLDDKPVDSRSPSPAKSDAD 273
           RSDDEHSPQRENGSLDDKPV+SRSPSPAKSDAD
Sbjct: 241 RSDDEHSPQRENGSLDDKPVNSRSPSPAKSDAD 249

[Close]

BLAST of Cp4.1LG07g01350 vs. ExPASy TrEMBL
Match: A0A6J1GJA8 (serine/arginine-rich splicing factor SC35-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111454726 PE=4 SV=1)

HSP 1 Score: 435 bits (1119), Expect = 9.98e-153
Identity = 245/274 (89.42%), Postives = 247/274 (90.15%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSMTRGRSRS 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSS TRGRSRS
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRS 120

Query: 121 RSPRPRQLIVISLFPAGYSTFSYGLQKYFRHRDDHRDRDYRRRSRSRSRERYDRDRPHRS 180
           RSPRPR                        HRDD+RDRDYRRRSRSRSRERYDRDRPHRS
Sbjct: 121 RSPRPR------------------------HRDDYRDRDYRRRSRSRSRERYDRDRPHRS 180

Query: 181 ERERHRSRSCSASPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTPSRG 240
           ERERHRSRS SASPD NKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTPSRG
Sbjct: 181 ERERHRSRSRSASPDCNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTPSRG 240

Query: 241 RSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE 274
           RSDDEHSPQRENGSLDDKPV+SRSPSPAKSDADE
Sbjct: 241 RSDDEHSPQRENGSLDDKPVNSRSPSPAKSDADE 250

[Close]

BLAST of Cp4.1LG07g01350 vs. ExPASy TrEMBL
Match: A0A6J1KK62 (serine/arginine-rich splicing factor SC35-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111496458 PE=4 SV=1)

HSP 1 Score: 435 bits (1118), Expect = 1.42e-152
Identity = 244/274 (89.05%), Postives = 246/274 (89.78%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSMTRGRSRS 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSS TRGRSRS
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRS 120

Query: 121 RSPRPRQLIVISLFPAGYSTFSYGLQKYFRHRDDHRDRDYRRRSRSRSRERYDRDRPHRS 180
           RSPRPR                        HRDD+RDRDYRRRSRSRSRERYDRDRPHRS
Sbjct: 121 RSPRPR------------------------HRDDYRDRDYRRRSRSRSRERYDRDRPHRS 180

Query: 181 ERERHRSRSCSASPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTPSRG 240
           ERE HRSRS SASPDRNKDRRRERDDER SASRS+RSMSPTRHSPDTRRSISPRRTPSRG
Sbjct: 181 EREHHRSRSRSASPDRNKDRRRERDDERHSASRSERSMSPTRHSPDTRRSISPRRTPSRG 240

Query: 241 RSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE 274
           RSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE
Sbjct: 241 RSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE 250

[Close]

BLAST of Cp4.1LG07g01350 vs. ExPASy TrEMBL
Match: A0A6J1GJ79 (serine/arginine-rich splicing factor SC35-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111454726 PE=4 SV=1)

HSP 1 Score: 434 bits (1115), Expect = 4.21e-152
Identity = 244/273 (89.38%), Postives = 246/273 (90.11%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSMTRGRSRS 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSS TRGRSRS
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRS 120

Query: 121 RSPRPRQLIVISLFPAGYSTFSYGLQKYFRHRDDHRDRDYRRRSRSRSRERYDRDRPHRS 180
           RSPRPR                        HRDD+RDRDYRRRSRSRSRERYDRDRPHRS
Sbjct: 121 RSPRPR------------------------HRDDYRDRDYRRRSRSRSRERYDRDRPHRS 180

Query: 181 ERERHRSRSCSASPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTPSRG 240
           ERERHRSRS SASPD NKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTPSRG
Sbjct: 181 ERERHRSRSRSASPDCNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTPSRG 240

Query: 241 RSDDEHSPQRENGSLDDKPVDSRSPSPAKSDAD 273
           RSDDEHSPQRENGSLDDKPV+SRSPSPAKSDAD
Sbjct: 241 RSDDEHSPQRENGSLDDKPVNSRSPSPAKSDAD 249

[Close]

BLAST of Cp4.1LG07g01350 vs. ExPASy TrEMBL
Match: A0A6J1KLY6 (serine/arginine-rich splicing factor SC35-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111496458 PE=4 SV=1)

HSP 1 Score: 433 bits (1114), Expect = 5.98e-152
Identity = 243/273 (89.01%), Postives = 245/273 (89.74%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSMTRGRSRS 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSS TRGRSRS
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRS 120

Query: 121 RSPRPRQLIVISLFPAGYSTFSYGLQKYFRHRDDHRDRDYRRRSRSRSRERYDRDRPHRS 180
           RSPRPR                        HRDD+RDRDYRRRSRSRSRERYDRDRPHRS
Sbjct: 121 RSPRPR------------------------HRDDYRDRDYRRRSRSRSRERYDRDRPHRS 180

Query: 181 ERERHRSRSCSASPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTPSRG 240
           ERE HRSRS SASPDRNKDRRRERDDER SASRS+RSMSPTRHSPDTRRSISPRRTPSRG
Sbjct: 181 EREHHRSRSRSASPDRNKDRRRERDDERHSASRSERSMSPTRHSPDTRRSISPRRTPSRG 240

Query: 241 RSDDEHSPQRENGSLDDKPVDSRSPSPAKSDAD 273
           RSDDEHSPQRENGSLDDKPVDSRSPSPAKSDAD
Sbjct: 241 RSDDEHSPQRENGSLDDKPVDSRSPSPAKSDAD 249

[Close]

BLAST of Cp4.1LG07g01350 vs. ExPASy TrEMBL
Match: A0A6J1K6Z8 (serine/arginine-rich splicing factor SC35-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111492207 PE=4 SV=1)

HSP 1 Score: 402 bits (1033), Expect = 1.30e-139
Identity = 235/276 (85.14%), Postives = 241/276 (87.32%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSMTRGRSRS 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSS   RGRSRS
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSK-ARGRSRS 120

Query: 121 RSPRPRQLIVISLFPAGYSTFSYGLQKYFRHRDDHRDRDYRRRSRSRSRERYDRDRPHRS 180
           RSPRPR                        HRDD+RDRDYRRRSRSRSRER+DRDRPHRS
Sbjct: 121 RSPRPR------------------------HRDDYRDRDYRRRSRSRSRERHDRDRPHRS 180

Query: 181 ERERHRSRSCSASPDRNKDRRRERDD-ERRSASRSDRSMSPTRHSPDTRRSISPRRTP-S 240
           ERER+RSRS SASPDR KDRRR RDD ERRSAS SDRSMSP RHSPDTRRSISPRRTP S
Sbjct: 181 ERERYRSRSRSASPDRIKDRRRGRDDVERRSASHSDRSMSPARHSPDTRRSISPRRTPPS 240

Query: 241 RGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE 274
           RGRSD+EHSP+R+NGS DDKPVDSRSPSPAKSDADE
Sbjct: 241 RGRSDEEHSPRRDNGSPDDKPVDSRSPSPAKSDADE 251

[Close]

BLAST of Cp4.1LG07g01350 vs. TAIR 10
Match: AT5G64200.1 (ortholog of human splicing factor SC35 )

HSP 1 Score: 239.6 bits (610), Expect = 3.0e-63
Identity = 164/273 (60.07%), Postives = 188/273 (68.86%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSMTRGRSRS 120
           FVRYKY DEA KA+++LDGR++DGREI VQFAKYGPNAEKI KG+V+E      R RSRS
Sbjct: 61  FVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRS 120

Query: 121 --RSPRPRQLIVISLFPAGYSTFSYGLQKYFRHRDDHRDRDYRRRSRSRSRERYDRDRPH 180
             RS  PR+    S  P    +         R RDD+R++DYR+RSRSRS +R  R+R  
Sbjct: 121 PRRSRSPRR----SRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRSYDR--RERHE 180

Query: 181 RSERE-RHRSRSCSASPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTP 240
             +R+ R R+RS SASPD  +  R   D+E RS SRS  S SP R SP   RS SP++T 
Sbjct: 181 EKDRDHRRRTRSRSASPDEKRRVRGRYDNESRSHSRS-LSASPARRSP---RSSSPQKT- 240

Query: 241 SRGRSDDEHSPQRENGSLDDKPVDSRSPSPAKS 271
                    SP RE     DK  + RSPSP +S
Sbjct: 241 ---------SPAREVS--PDKRSNERSPSPRRS 251

[Close]

BLAST of Cp4.1LG07g01350 vs. TAIR 10
Match: AT5G64200.2 (ortholog of human splicing factor SC35 )

HSP 1 Score: 239.6 bits (610), Expect = 3.0e-63
Identity = 164/273 (60.07%), Postives = 188/273 (68.86%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSMTRGRSRS 120
           FVRYKY DEA KA+++LDGR++DGREI VQFAKYGPNAEKI KG+V+E      R RSRS
Sbjct: 61  FVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRS 120

Query: 121 --RSPRPRQLIVISLFPAGYSTFSYGLQKYFRHRDDHRDRDYRRRSRSRSRERYDRDRPH 180
             RS  PR+    S  P    +         R RDD+R++DYR+RSRSRS +R  R+R  
Sbjct: 121 PRRSRSPRR----SRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRSYDR--RERHE 180

Query: 181 RSERE-RHRSRSCSASPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTP 240
             +R+ R R+RS SASPD  +  R   D+E RS SRS  S SP R SP   RS SP++T 
Sbjct: 181 EKDRDHRRRTRSRSASPDEKRRVRGRYDNESRSHSRS-LSASPARRSP---RSSSPQKT- 240

Query: 241 SRGRSDDEHSPQRENGSLDDKPVDSRSPSPAKS 271
                    SP RE     DK  + RSPSP +S
Sbjct: 241 ---------SPAREVS--PDKRSNERSPSPRRS 251

[Close]

BLAST of Cp4.1LG07g01350 vs. TAIR 10
Match: AT1G55310.1 (SC35-like splicing factor 33 )

HSP 1 Score: 74.7 bits (182), Expect = 1.3e-13
Identity = 97/265 (36.60%), Postives = 126/265 (47.55%), Query Frame = 0


Query: 17  SLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDK 76
           SLLV N+      +DL   F+++G V D+++PRD  TGD RGF FV++    +A  A   
Sbjct: 37  SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHH 96

Query: 77  LDGRMLDGREIMVQFAKYG---PNAEKIRK---GKVMESSSSMTRGRSRSRSPRPRQLIV 136
           +DG +L GRE+ V FA+     P   + R+   G+  +   +  R  SRSRSP PR+   
Sbjct: 97  MDGYLLLGRELTVVFAEENRKKPTEMRARERGGGRFRDRRRTPPRYYSRSRSPPPRR--- 156

Query: 137 ISLFPAGYSTFSYGLQKYFRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERHRSRSC 196
                 G S    G   Y+        R +  RS S   ERYD  R +        SR  
Sbjct: 157 ------GRSRSRSG--DYY----SPPPRRHHPRSISPREERYDGRRSYSRSPASDGSRGR 216

Query: 197 SASPDRNKDRRRERDDERRSASRSD-RSMSPTRHSPDTRRSISPRRTPSRGRSDDEHSPQ 256
           S +P R K R       RRS SRS  RS SP   SP   RS+SPRR+ SR       SP+
Sbjct: 217 SLTPVRGKSRSLS-PSPRRSISRSPRRSRSP---SPKRNRSVSPRRSISRS-PRRSRSPR 276

Query: 257 RENGSLDDKPVDSRSPSPAKSDADE 275
           R   S   +P  SRS SP     DE
Sbjct: 277 RSRRSYTPEPARSRSQSPHGGQYDE 281

[Close]

BLAST of Cp4.1LG07g01350 vs. TAIR 10
Match: AT3G13570.1 (SC35-like splicing factor 30A )

HSP 1 Score: 66.6 bits (161), Expect = 3.5e-11
Identity = 95/279 (34.05%), Postives = 131/279 (46.95%), Query Frame = 0


Query: 4   FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
           FG S   D+    SLLV N+      +DL   F+++G V D+++PRD  TGD RGF F++
Sbjct: 27  FGGSRDSDL--PTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQ 86

Query: 64  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSMTRGRSRSRSP 123
           +    +A +A  ++DG +L GRE+ V FA+   N +K  + +  +      R + R RSP
Sbjct: 87  FMDPADAAEAKHQMDGYLLLGRELTVVFAE--ENRKKPTEMRTRDRGGRSNRFQDRRRSP 146

Query: 124 RPRQLIVISLFPAGYSTFSYGLQKYFRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERE 183
            PR           YS                R    RR  RSRSR R     P     +
Sbjct: 147 -PR-----------YS----------------RSPPPRRGRRSRSRSRGYNSPP----AK 206

Query: 184 RHRSRSCSASPDRNKDRRRERDDERRSASRSD-------RSMSPTR---HSPDTRRSISP 243
           RH+SRS S      +DRR E++   RS SRS        RS SP R   HS   RRS+SP
Sbjct: 207 RHQSRSVSP-----QDRRYEKE---RSYSRSPPHNGSRVRSGSPGRVKSHSRSPRRSVSP 253

Query: 244 RRTPSRGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDA 273
           R+  S       ++P++   S    P  SRSP+P    A
Sbjct: 267 RKNRS-------YTPEQAR-SQSPVPRQSRSPTPVPRGA 253

[Close]

BLAST of Cp4.1LG07g01350 vs. TAIR 10
Match: AT1G55310.3 (SC35-like splicing factor 33 )

HSP 1 Score: 63.2 bits (152), Expect = 3.9e-10
Identity = 96/278 (34.53%), Postives = 125/278 (44.96%), Query Frame = 0


Query: 17  SLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTG------------DSRGFAFVRY 76
           SLLV N+      +DL   F+++G V D+++PRD  TG            D RGF FV++
Sbjct: 37  SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGSHLCTDTCKASRDPRGFGFVQF 96

Query: 77  KYADEAQKAIDKLDGRMLDGREIMVQFAKYG---PNAEKIRK----GKVMESSSSMTRGR 136
               +A  A   +DG +L GRE+ V FA+     P   + R+     +  +   +  R  
Sbjct: 97  MDPADAADAKHHMDGYLLLGRELTVVFAEENRKKPTEMRARERGGGSRFRDRRRTPPRYY 156

Query: 137 SRSRSPRPRQLIVISLFPAGYSTFSYGLQKYFRHRDDHRDRDYRRRSRSRSRERYDRDRP 196
           SRSRSP PR+         G S    G   Y+        R +  RS S   ERYD  R 
Sbjct: 157 SRSRSPPPRR---------GRSRSRSG--DYY----SPPPRRHHPRSISPREERYDGRRS 216

Query: 197 HRSERERHRSRSCSASPDRNKDRRRERDDERRSASRSD-RSMSPTRHSPDTRRSISPRRT 256
           +        SR  S +P R K R       RRS SRS  RS SP   SP   RS+SPRR+
Sbjct: 217 YSRSPASDGSRGRSLTPVRGKSRSLS-PSPRRSISRSPRRSRSP---SPKRNRSVSPRRS 276

Query: 257 PSRGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE 275
            SR       SP+R   S   +P  SRS SP     DE
Sbjct: 277 ISRS-PRRSRSPRRSRRSYTPEPARSRSQSPHGGQYDE 294

The following BLAST results are available for this feature:

BLAST of Cp4.1LG07g01350 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMG4	4.2e-62	60.07	Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana OX=3702 GN=SC3...	[more]
P30352	6.0e-24	40.94	Serine/arginine-rich splicing factor 2 OS=Gallus gallus OX=9031 GN=SRSF2 PE=2 SV...	[more]
Q3MHR5	2.3e-23	40.16	Serine/arginine-rich splicing factor 2 OS=Bos taurus OX=9913 GN=SRSF2 PE=2 SV=3	[more]
Q01130	2.3e-23	40.16	Serine/arginine-rich splicing factor 2 OS=Homo sapiens OX=9606 GN=SRSF2 PE=1 SV=...	[more]
Q62093	2.3e-23	40.16	Serine/arginine-rich splicing factor 2 OS=Mus musculus OX=10090 GN=Srsf2 PE=1 SV...	[more]

BLAST of Cp4.1LG07g01350 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023538162.1	4.76e-158	91.24	serine/arginine-rich splicing factor SC35-like isoform X2 [Cucurbita pepo subsp....	[more]
XP_023538161.1	2.01e-157	91.21	serine/arginine-rich splicing factor SC35-like isoform X1 [Cucurbita pepo subsp....	[more]
XP_022952013.1	2.06e-152	89.42	serine/arginine-rich splicing factor SC35-like isoform X2 [Cucurbita moschata]	[more]
XP_023002672.1	2.93e-152	89.05	serine/arginine-rich splicing factor SC35-like isoform X2 [Cucurbita maxima]	[more]
XP_022952012.1	8.70e-152	89.38	serine/arginine-rich splicing factor SC35-like isoform X1 [Cucurbita moschata]	[more]

BLAST of Cp4.1LG07g01350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GJA8	9.98e-153	89.42	serine/arginine-rich splicing factor SC35-like isoform X2 OS=Cucurbita moschata ...	[more]
A0A6J1KK62	1.42e-152	89.05	serine/arginine-rich splicing factor SC35-like isoform X2 OS=Cucurbita maxima OX...	[more]
A0A6J1GJ79	4.21e-152	89.38	serine/arginine-rich splicing factor SC35-like isoform X1 OS=Cucurbita moschata ...	[more]
A0A6J1KLY6	5.98e-152	89.01	serine/arginine-rich splicing factor SC35-like isoform X1 OS=Cucurbita maxima OX...	[more]
A0A6J1K6Z8	1.30e-139	85.14	serine/arginine-rich splicing factor SC35-like isoform X1 OS=Cucurbita maxima OX...	[more]

BLAST of Cp4.1LG07g01350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G64200.1	3.0e-63	60.07	ortholog of human splicing factor SC35	[more]
AT5G64200.2	3.0e-63	60.07	ortholog of human splicing factor SC35	[more]
AT1G55310.1	1.3e-13	36.60	SC35-like splicing factor 33	[more]
AT3G13570.1	3.5e-11	34.05	SC35-like splicing factor 30A	[more]
AT1G55310.3	3.9e-10	34.53	SC35-like splicing factor 33	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 17..90 e-value: 5.3E-25 score: 99.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 18..87 e-value: 7.5E-21 score: 73.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 16..94 score: 19.570105
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 4..105 e-value: 1.1E-27 score: 99.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 153..274
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..124
None	No IPR available	PANTHER	PTHR23147:SF156	SERINE/ARGININE-RICH SPLICING FACTOR SC35	coord: 1..274
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 1..274
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 9..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG07g01350.1	Cp4.1LG07g01350.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016607	nuclear speck
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding