Cp4.1LG07g00380 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG07g00380
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial-like
Location	Cp4.1LG07: 279925 .. 283744 (+)
RNA-Seq Expression	Cp4.1LG07g00380
Synteny	Cp4.1LG07g00380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTTAAATGGGCTGCGCTTGACCCTGTATGGCCCATTTTAGTCATACGACAAGTAGTTCTGGACGGGAACGACAATTGGCTCCGCTTTGGTATGGAAGGTTCGACCGTCGGATTCTCACTGAAATGCCTTCATCTTCTCCGGTGGAAGATGTAATTGCTCTATATTCAACGATGACGAAGATAAAGATGTCTTGAATATTCATTTTCGAGTTGAGTCTGCGCTTTTCTCGGAGTGAATTCGTTTTAGTTTTGAATTTTGTTCAATCTCAGAAGTCGATATCTGAATTTGGTTACCTTCATGGCGATTGCTTCCATTTCTATTCTCCGCCACCACTCCACCTCTATCGCTGCCATTGCATCAGTCCCGGCCTTCGGAAATATTCTCCGGCGATGCTTCAACGTCCGATGCCTCTCAATCGTTGCCAAACAGCATAACCCTAACAATGTCTCCAATAAACCTCCGCCAAGCAAGAATCTACTCCGAGCTAAACATACTTTCAAGAATTATTCGTCTCTTGCACCGGTTCTCTCTCCCCAAGATATTCCTCCTCTCTCCGAATCTCAAGCCATCGGCACCGTTGCTGCTGCCCAAGCTAATTTCATGCGCGTAATTGTTCAGTCGCTTCCTTCTCAGCTTTCTGACAGTTCGAACAGCGATTCGGAGCGTTCTGGAAGCCTAGAAGGCGATTCTTCGGATTCTTCTCGCCTTGGAATTGAGTTGCTCTGCGTAGTGAAGGCGGTGCTGAAGAAGATAAAGAGGAGAGTGTTAGTCGGGGACAAGGTGGTCGTTGGTTCCATTGATTGGGTGGACCGCAGGGGAATGATCGAGAATGTCTTCCAAAGAAGCTCGGAGATCCTTGATCCTCCGGTAGCCAATGTGGACCATTTACTTGTGCTCTTCTCCATAGATCAGCCGAAGTTAGAGCCGTTTACACTTACAAGGTTTCTAGTGGAAGCAGAGTCTACCGGAATTCCCCTGACGCTGGGTCTCAATAAATTGGAACTCGTCGATGAAGAGGTTAGAGTTTGAATCTTATACTTACTCTAAGCTCTCTGATCATAACTATTTTGGTGGTTTAGGCTATATCTGAAATCTCTAGCATCATCTACCAATACTTTTTCTCATGAATACGATTGATGACAGATTGTTGAACATGAAGGATTTTCTGAACACCTGAAACTCAAATTAATCTCTGAAGGTTTAATATCGTGTGAAAAGAGGATTCAAAGTTCATGTTCTAGTCCTACAATGTAGCTATGGTAATTTAGCAACTTCTGTTCATAATTTGGAAATGTGAAGGTATAAACGAGCGTCAATGAAAGCATGCTCTAGTCCTACTACTTGACGAAAAACAAAGAGAACAAACCTTACAAATCTCTCTTAATTAGTGGAAACAATAGAGAATAGCATGAAAAAAGTGCTTCAATTCTATTATGTGTTTGAAATGAGAAATTTACGTGAATTTGTAGGACCTTGATTAGACTAATAACCTTACAACCTCTCTTACCAACCCCACAAAGTGTCTTAACTCAGGTCCCTCCTAATTACAAGCCACTACCCTAAATGAGTGGCACTAACATCAATTGACTATGTCAAATTACTTAATCAGTAAGTTTTCACTAGCTTTTAACTGTACTGATACCCCACAAGGCTGTTGCTTATTGTCGACCACTGTTATGTTATAACTGTTGCTACTTCGCTCTGTACTATTGTAACAGCCCAAGCTCACAGCTAACATATATTGTCTTCTTTGTGCTTTAGAAACAATGTTTCGTTCTCCTCCCCAACCGATCCGATGTGGGATCTGACAACTATTCTCATGGATGCTTCTTTTTCTTATAATGTCATTCCTTAACTTGTAACATAAACTTCTTGCATTGCTTGACTTATTGCATACTCTCTAGTTTTGGATCCTGCTTGAATCTCTCTAGGAGAGCAGTGATTGTTCGAAGTTTCTTGTAACTATGCATACATGCATTTCCTTTCTTGATGCTGACAGTTATTTGGAATGGCATATTGCAGACAGTAGTTTCTTGGAAGTCCAGACTGCGCAGCTGGGGCTATGACCCCCTTTTTTGCAGTGTTCAAACAAGGATTGGACTTGATTCCCTAGCATATATTTTGAGAGATCAAACTACAGTTATTGTGGGTCCAAGTGGAGTTGGGAAATCAAGTCTCATCAATGCTCTGAGAAGCAATAACCGTGCTGCTGATGCTGTAGAGGGAGATAATTGGTTTGATCCCGTGTGTTCAATCATTCTTCCAATTTTAACTGTGTTGTTTTTGTTGATTAGTGTATTAATTCTGGGGATTTCTTGATCACTCGGCTCATAAGGGTTTGAATATTTTTCTGGTCTGTTCACAGATTCGAGATAGCAAGTGGTTTGAGGATCAGCGTGTTGCAGAAGTTTCGACAAGAAGCGGTAGAGGGAAGCATACTACCCGTCATGTTTCTCTCCTACCGTTGATGGGAGGGGGCTATCTTGCAGATACTCCTGGTTTTAACCAGCCTAGTTTGATGAAAATAACCAAGCAATCACTTGCCCAAGCCTTCCCTGAGGTGTACATCATTACTCAGCAATGTTGACCATCATTACCAATGCTTATAATTCCTGGCATAAATTTCAACTTCTGTGGAATTTCTTGTGTTGAACTAACTTCTTTGTACAGATCCGGAACAAGCTTCTTGCCAGTGAACCTGCTAAATGCTCTTTTAACGATTGCTTACATCTTGGCGAACCGGGTTGTGTTATTAATGGAGATTGGGAGCGATATCAATACTATTTCCAACTTCTTGATGAAATCAGAATTAGGGAAGAATTCCAGTTGAGAACATTTGGAACGAAAAGAGAGGGGGATGTCAGGTATGTTTTACCTTAGAGATTGTGAATAATTACACTAAAATATTGCTTCTTTGATCTGTGCCTGAGAGGGGTAATACATTAAATGGAATTCATTGATCTGCGATGTTATTTCCTTTCAGCATTTATTTATTTAAAACAAATTAGAACGCTAAACATTGAAAAGTAATGTCTGCAAATGTTTTGTAAATGTGCCTTTGATCATTTGGCAATACTGCTGTGACTTTCTAGTAATAAGGAAGTAGGTTCGCAACTTTCTCTAAGCGTGTATCAGTTCGATATTGTAATTACTTTCGAGGATCTCATCTTGTGCTACAAAGATTATTAATCACATTTGATAAAATATTTTGATTGCAGTTTTATATGCATTTATATTCATATAGCATTTGTGATACTACTTCGGATTAGGGGCGTCGTTGTCGAAAGGAACTAATAACTTGTTTATGTGAATGGCCCTAATAGTTCTCCTACTGACCTTATGCCTTTATTGAAATATATTCGAATAACAATATCGAGTGGTTACCTCGAATCCTCTCTGATTCTCATATGAGACGAATCCAAAACTATAGTGATGGAAGAACTTTGCTTTGCAGGATTAAGGTTGGAGATATGGGTGCTCAGCAAGCAGAACCAAGGTTGGAGCTCAAGAAGCATAGGAGACAATCTCGTAAGAGAGTGAACCAGTCGATACTCAACGAGTTAGACGAGTTGGAAGACGAAGATGACGACTCGTTGGAGGAGGATGATCCCATTTTGAGGGCAATGAGGAATGAAAACAAGTAGGAGCAAAGCCATCAGCAGCATCTATAAACCCCCCCAGTGTATATACTTTCCTTTTACTTCTCCGACTCTTACATGCTGAATAAACTTGCGAAGAAAATTGACGATTTCAGAATTCTAATGCTAAATTTCATGTTCTAAACGTTTTTCACATGATTATCAGCTCTATCTAATCGTT

mRNA sequence

TGTTAAATGGGCTGCGCTTGACCCTGTATGGCCCATTTTAGTCATACGACAAGTAGTTCTGGACGGGAACGACAATTGGCTCCGCTTTGGTATGGAAGGTTCGACCGTCGGATTCTCACTGAAATGCCTTCATCTTCTCCGGTGGAAGATGTAATTGCTCTATATTCAACGATGACGAAGATAAAGATGTCTTGAATATTCATTTTCGAGTTGAGTCTGCGCTTTTCTCGGAGTGAATTCGTTTTAGTTTTGAATTTTGTTCAATCTCAGAAGTCGATATCTGAATTTGGTTACCTTCATGGCGATTGCTTCCATTTCTATTCTCCGCCACCACTCCACCTCTATCGCTGCCATTGCATCAGTCCCGGCCTTCGGAAATATTCTCCGGCGATGCTTCAACGTCCGATGCCTCTCAATCGTTGCCAAACAGCATAACCCTAACAATGTCTCCAATAAACCTCCGCCAAGCAAGAATCTACTCCGAGCTAAACATACTTTCAAGAATTATTCGTCTCTTGCACCGGTTCTCTCTCCCCAAGATATTCCTCCTCTCTCCGAATCTCAAGCCATCGGCACCGTTGCTGCTGCCCAAGCTAATTTCATGCGCGTAATTGTTCAGTCGCTTCCTTCTCAGCTTTCTGACAGTTCGAACAGCGATTCGGAGCGTTCTGGAAGCCTAGAAGGCGATTCTTCGGATTCTTCTCGCCTTGGAATTGAGTTGCTCTGCGTAGTGAAGGCGGTGCTGAAGAAGATAAAGAGGAGAGTGTTAGTCGGGGACAAGGTGGTCGTTGGTTCCATTGATTGGGTGGACCGCAGGGGAATGATCGAGAATGTCTTCCAAAGAAGCTCGGAGATCCTTGATCCTCCGGTAGCCAATGTGGACCATTTACTTGTGCTCTTCTCCATAGATCAGCCGAAGTTAGAGCCGTTTACACTTACAAGGTTTCTAGTGGAAGCAGAGTCTACCGGAATTCCCCTGACGCTGGGTCTCAATAAATTGGAACTCGTCGATGAAGAGACAGTAGTTTCTTGGAAGTCCAGACTGCGCAGCTGGGGCTATGACCCCCTTTTTTGCAGTGTTCAAACAAGGATTGGACTTGATTCCCTAGCATATATTTTGAGAGATCAAACTACAGTTATTGTGGGTCCAAGTGGAGTTGGGAAATCAAGTCTCATCAATGCTCTGAGAAGCAATAACCGTGCTGCTGATGCTGTAGAGGGAGATAATTGGTTTGATCCCATTCGAGATAGCAAGTGGTTTGAGGATCAGCGTGTTGCAGAAGTTTCGACAAGAAGCGGTAGAGGGAAGCATACTACCCGTCATGTTTCTCTCCTACCGTTGATGGGAGGGGGCTATCTTGCAGATACTCCTGGTTTTAACCAGCCTAGTTTGATGAAAATAACCAAGCAATCACTTGCCCAAGCCTTCCCTGAGATCCGGAACAAGCTTCTTGCCAGTGAACCTGCTAAATGCTCTTTTAACGATTGCTTACATCTTGGCGAACCGGGTTGTGTTATTAATGGAGATTGGGAGCGATATCAATACTATTTCCAACTTCTTGATGAAATCAGAATTAGGGAAGAATTCCAGTTGAGAACATTTGGAACGAAAAGAGAGGGGGATGTCAGGATTAAGGTTGGAGATATGGGTGCTCAGCAAGCAGAACCAAGGTTGGAGCTCAAGAAGCATAGGAGACAATCTCGTAAGAGAGTGAACCAGTCGATACTCAACGAGTTAGACGAGTTGGAAGACGAAGATGACGACTCGTTGGAGGAGGATGATCCCATTTTGAGGGCAATGAGGAATGAAAACAAGTAGGAGCAAAGCCATCAGCAGCATCTATAAACCCCCCCAGTGTATATACTTTCCTTTTACTTCTCCGACTCTTACATGCTGAATAAACTTGCGAAGAAAATTGACGATTTCAGAATTCTAATGCTAAATTTCATGTTCTAAACGTTTTTCACATGATTATCAGCTCTATCTAATCGTT

Coding sequence (CDS)

ATGGCGATTGCTTCCATTTCTATTCTCCGCCACCACTCCACCTCTATCGCTGCCATTGCATCAGTCCCGGCCTTCGGAAATATTCTCCGGCGATGCTTCAACGTCCGATGCCTCTCAATCGTTGCCAAACAGCATAACCCTAACAATGTCTCCAATAAACCTCCGCCAAGCAAGAATCTACTCCGAGCTAAACATACTTTCAAGAATTATTCGTCTCTTGCACCGGTTCTCTCTCCCCAAGATATTCCTCCTCTCTCCGAATCTCAAGCCATCGGCACCGTTGCTGCTGCCCAAGCTAATTTCATGCGCGTAATTGTTCAGTCGCTTCCTTCTCAGCTTTCTGACAGTTCGAACAGCGATTCGGAGCGTTCTGGAAGCCTAGAAGGCGATTCTTCGGATTCTTCTCGCCTTGGAATTGAGTTGCTCTGCGTAGTGAAGGCGGTGCTGAAGAAGATAAAGAGGAGAGTGTTAGTCGGGGACAAGGTGGTCGTTGGTTCCATTGATTGGGTGGACCGCAGGGGAATGATCGAGAATGTCTTCCAAAGAAGCTCGGAGATCCTTGATCCTCCGGTAGCCAATGTGGACCATTTACTTGTGCTCTTCTCCATAGATCAGCCGAAGTTAGAGCCGTTTACACTTACAAGGTTTCTAGTGGAAGCAGAGTCTACCGGAATTCCCCTGACGCTGGGTCTCAATAAATTGGAACTCGTCGATGAAGAGACAGTAGTTTCTTGGAAGTCCAGACTGCGCAGCTGGGGCTATGACCCCCTTTTTTGCAGTGTTCAAACAAGGATTGGACTTGATTCCCTAGCATATATTTTGAGAGATCAAACTACAGTTATTGTGGGTCCAAGTGGAGTTGGGAAATCAAGTCTCATCAATGCTCTGAGAAGCAATAACCGTGCTGCTGATGCTGTAGAGGGAGATAATTGGTTTGATCCCATTCGAGATAGCAAGTGGTTTGAGGATCAGCGTGTTGCAGAAGTTTCGACAAGAAGCGGTAGAGGGAAGCATACTACCCGTCATGTTTCTCTCCTACCGTTGATGGGAGGGGGCTATCTTGCAGATACTCCTGGTTTTAACCAGCCTAGTTTGATGAAAATAACCAAGCAATCACTTGCCCAAGCCTTCCCTGAGATCCGGAACAAGCTTCTTGCCAGTGAACCTGCTAAATGCTCTTTTAACGATTGCTTACATCTTGGCGAACCGGGTTGTGTTATTAATGGAGATTGGGAGCGATATCAATACTATTTCCAACTTCTTGATGAAATCAGAATTAGGGAAGAATTCCAGTTGAGAACATTTGGAACGAAAAGAGAGGGGGATGTCAGGATTAAGGTTGGAGATATGGGTGCTCAGCAAGCAGAACCAAGGTTGGAGCTCAAGAAGCATAGGAGACAATCTCGTAAGAGAGTGAACCAGTCGATACTCAACGAGTTAGACGAGTTGGAAGACGAAGATGACGACTCGTTGGAGGAGGATGATCCCATTTTGAGGGCAATGAGGAATGAAAACAAGTAG

Protein sequence

MAIASISILRHHSTSIAAIASVPAFGNILRRCFNVRCLSIVAKQHNPNNVSNKPPPSKNLLRAKHTFKNYSSLAPVLSPQDIPPLSESQAIGTVAAAQANFMRVIVQSLPSQLSDSSNSDSERSGSLEGDSSDSSRLGIELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSSEILDPPVANVDHLLVLFSIDQPKLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEETVVSWKSRLRSWGYDPLFCSVQTRIGLDSLAYILRDQTTVIVGPSGVGKSSLINALRSNNRAADAVEGDNWFDPIRDSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLMGGGYLADTPGFNQPSLMKITKQSLAQAFPEIRNKLLASEPAKCSFNDCLHLGEPGCVINGDWERYQYYFQLLDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRKRVNQSILNELDELEDEDDDSLEEDDPILRAMRNENK

Homology

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BLAST of Cp4.1LG07g00380 vs. ExPASy Swiss-Prot
Match: Q4V399 (Small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=rsgA PE=2 SV=1)

HSP 1 Score: 621.3 bits (1601), Expect = 9.5e-177
Identity = 321/448 (71.65%), Postives = 368/448 (82.14%), Query Frame = 0


Query: 60  LLRAKHTFKNY-SSLAPVLSPQDIPPLSESQAIGTVAAAQANFMRVIVQSLPSQLSDSSN 119
           +LRAKH  KNY SSL+PVLSP+  P L ESQAIGTVA AQANFMRVIVQ     +++S  
Sbjct: 1   MLRAKHIGKNYSSSLSPVLSPEHKPSLLESQAIGTVATAQANFMRVIVQ----DVANSVT 60

Query: 120 SDSERSGSLEGDSSDSSRLGIELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIEN 179
           SD         D +DSS+ G+ELLCVV+AVLKKI+RRVLVGDKV+VGSIDWVDRRGMIEN
Sbjct: 61  SD---------DDNDSSKTGVELLCVVRAVLKKIRRRVLVGDKVLVGSIDWVDRRGMIEN 120

Query: 180 VFQRSSEILDPPVANVDHLLVLFSIDQPKLEPFTLTRFLVEAESTGIPLTLGLNKLELVD 239
           VF R SEILDPPVANVDHLLVLFS+DQPKLEPFTLTRFLVEAEST IPLTL LNK EL+ 
Sbjct: 121 VFHRRSEILDPPVANVDHLLVLFSLDQPKLEPFTLTRFLVEAESTRIPLTLALNKTELIS 180

Query: 240 EETVVSWKSRLRSWGYDPLFCSVQTRIGLDSLAYILRDQTTVIVGPSGVGKSSLINALRS 299
           EE + +WK RLR W Y+PLFCSV T+ GLD +A++LRDQT+VIVGPSGVGKSSLIN LRS
Sbjct: 181 EEELETWKIRLRGWNYEPLFCSVGTKDGLDDIAFVLRDQTSVIVGPSGVGKSSLINVLRS 240

Query: 300 NNRAADAVEGDNWFDPIRDSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLMGGGYLADTP 359
           N+     VE +NWF+P+  +KWF+DQRV EVS+RSGRGKHTTR+VSLLP+  GGYLADTP
Sbjct: 241 NH-GGGVVEDENWFEPMLGNKWFDDQRVGEVSSRSGRGKHTTRNVSLLPVSEGGYLADTP 300

Query: 360 GFNQPSLMKITKQSLAQAFPEIRNKLLASEPAKCSFNDCLHLGEPGCVINGDWERYQYYF 419
           GFNQPSL+K+TK SLA  FPEIRN +   E  KC F DCLH+GEPGCV+ GDWERY YY 
Sbjct: 301 GFNQPSLLKVTKHSLAHCFPEIRNMI---ESEKCGFRDCLHIGEPGCVVKGDWERYPYYL 360

Query: 420 QLLDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRKRVNQSILN 479
           QLLDEIRIREEFQLRTFGTKRE DVR KVGDMG + AEPRL  KKHRR+SRK+  Q++++
Sbjct: 361 QLLDEIRIREEFQLRTFGTKREDDVRYKVGDMGVKHAEPRLMPKKHRRESRKKTKQTMIS 420

Query: 480 ELDELEDEDDDSLEEDDPILRAMRNENK 507
           ELDE EDED D   E+DPI++A+ NENK
Sbjct: 421 ELDEFEDEDSDLYIENDPIVQAIENENK 431

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BLAST of Cp4.1LG07g00380 vs. ExPASy Swiss-Prot
Match: F4HTL8 (Small ribosomal subunit biogenesis GTPase RsgA 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g67460 PE=2 SV=2)

HSP 1 Score: 286.2 bits (731), Expect = 7.3e-76
Identity = 158/275 (57.45%), Postives = 196/275 (71.27%), Query Frame = 0


Query: 25  FGNILRRCFNVRCLSIVAKQHNPNNVSNKPPPSKNLLRAKHTFKNYSSLAPVLSPQDIPP 84
           FG  LR   +   LS + +Q NP NV+  P P+K +LR        S LAPVL   + P 
Sbjct: 24  FGTGLRIRRSFYFLSAI-RQENP-NVTKNPHPNKTILR--------SFLAPVLPLDEKPN 83

Query: 85  LSESQAIGTVAAAQANFMRVIVQSLPSQLSDSSNSDSERSGSLEGDSSDSSRLGIELLCV 144
           L E QAIGT+A A A++MRVIVQ +P                 E D+ +  ++G+ELLCV
Sbjct: 84  LVELQAIGTIATALADYMRVIVQDVP-----------------ESDNGEDDKIGVELLCV 143

Query: 145 VKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSSEILDPPVANVDHLLVLFSID 204
           V+ +LKKI R VLVGDKV+V  +DWVDRR  I NVF R SE+LDPPVANVDHL++LFS+D
Sbjct: 144 VRKLLKKIGRTVLVGDKVLVDKVDWVDRRAKIINVFDRVSEVLDPPVANVDHLVILFSLD 203

Query: 205 QPKLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEETVVSWKSRLRSWGYDPLFCSVQTR 264
           QPK++PFTLTRFLVEAES GI +T+ LNK ELV +E V SWK RLRSW Y+PLFCSV T+
Sbjct: 204 QPKIDPFTLTRFLVEAESIGIRITVALNKCELVTQEEVESWKIRLRSWNYEPLFCSVGTK 263

Query: 265 IGLDSLAYILRDQTTVIVGPSGVGKSSLINALRSN 300
           +G+D +A+ LR+QT+VIVGPSGVGKSSLIN LRS+
Sbjct: 264 VGIDEIAFNLRNQTSVIVGPSGVGKSSLINILRSS 271

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BLAST of Cp4.1LG07g00380 vs. ExPASy Swiss-Prot
Match: Q8YUA3 (Small ribosomal subunit biogenesis GTPase RsgA 1 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rsgA1 PE=3 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 6.0e-70
Identity = 165/398 (41.46%), Postives = 218/398 (54.77%), Query Frame = 0


Query: 89  QAIGTVAAAQANFMRVIVQSLPSQLSDSSNSDSERSGSLEGDSSDSSRLG--IELLCVVK 148
           Q +GTV A QANF +V       QL         R    E        L     LLC  +
Sbjct: 8   QLLGTVVAVQANFYKV-------QLDQEVREQGSRGAGEEVHLDSPLPLCPLSLLLCTRR 67

Query: 149 AVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSSEILDPPVANVDHLLVLFSIDQP 208
             LKKI ++V+VGD+VVV   DW   RG I +V  R +++  PP+AN D +L++F++  P
Sbjct: 68  TRLKKIGQQVMVGDRVVVEEPDWAGGRGAIADVLSRQTQLDRPPIANADQILLVFAVADP 127

Query: 209 KLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEETVVSWKSRLRSWGYDPLFCSVQTRIG 268
            LEP+ L+RFLV+AE+TG+ + L LNK +LV  E       RL +WGY PLF SV+ +I 
Sbjct: 128 PLEPYQLSRFLVKAETTGLDVVLCLNKSDLVSPEIQQQISDRLLAWGYQPLFISVENQIN 187

Query: 269 LDSLAYILRDQTTVIVGPSGVGKSSLINALRSNNRAADAVEGDNWFDPIRDSKWFEDQRV 328
           +D +A  L ++ TV+ GPSGVGKSSLINAL  N                       + RV
Sbjct: 188 IDQIAKYLSNKITVVAGPSGVGKSSLINALIPN----------------------INLRV 247

Query: 329 AEVSTRSGRGKHTTRHVSLLPLMGGGYLADTPGFNQPSLMKITKQSLAQAFPEIRNKLLA 388
            EVS +  RG+HTTRHV L  L  GG LADTPGFNQP  +  + + L   FPE R +L  
Sbjct: 248 GEVSGKLARGRHTTRHVELFELPNGGLLADTPGFNQPD-VDCSPEELVHYFPEARERLAI 307

Query: 389 SEPAKCSFNDCLHLGEPGCVINGDWERYQYYFQLLDEIRIREEFQLRTFGTKREGDVRIK 448
              A C FNDC H  EP C + GDWERY++Y + L +  I  + QL       E  +++K
Sbjct: 308 ---ASCRFNDCSHRDEPDCAVRGDWERYEHYLEFLAD-AIARQTQLYQ-QADPESTLKLK 367

Query: 449 VGDMGAQQAEPRLELKKHRRQSRKRVNQSILNELDELE 485
               G  Q EP+LE KK+RR SR+   Q + +   E E
Sbjct: 368 TKGKGQSQYEPKLESKKYRRTSRRTQVQGLQDLYQEEE 370

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BLAST of Cp4.1LG07g00380 vs. ExPASy Swiss-Prot
Match: Q3MG79 (Small ribosomal subunit biogenesis GTPase RsgA OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rsgA PE=3 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 6.0e-70
Identity = 168/398 (42.21%), Postives = 220/398 (55.28%), Query Frame = 0


Query: 89  QAIGTVAAAQANFMRVIVQSLPSQLSDSSNSDSERSGSLEG--DSSDSSRLGIELLCVVK 148
           Q +GTV A QANF +V       QL         R    E   DS         LLC  +
Sbjct: 8   QLLGTVVAVQANFYKV-------QLDQDVREPGSRGAGEEVHLDSPLPLYPLSLLLCTRR 67

Query: 149 AVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSSEILDPPVANVDHLLVLFSIDQP 208
             LKKI ++V+VGD+VVV   DW   RG I  V  R +++  PP+AN D +L++F++  P
Sbjct: 68  TRLKKIGQQVMVGDRVVVEEPDWAGGRGAIAEVLSRQTQLDRPPIANADQILLVFAVADP 127

Query: 209 KLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEETVVSWKSRLRSWGYDPLFCSVQTRIG 268
            LEP+ L+RFLV+AE+TG+ + L LNK +LV  E       RL +WGY PLF SV+ +I 
Sbjct: 128 PLEPYQLSRFLVKAETTGLDVVLCLNKSDLVSPEIQQQISDRLLAWGYQPLFISVEKQIN 187

Query: 269 LDSLAYILRDQTTVIVGPSGVGKSSLINALRSNNRAADAVEGDNWFDPIRDSKWFEDQRV 328
           +D +A  L ++ TV+ GPSGVGKSSLINAL                  I D     + RV
Sbjct: 188 IDQIAKYLSNKITVVAGPSGVGKSSLINAL------------------IPDI----NLRV 247

Query: 329 AEVSTRSGRGKHTTRHVSLLPLMGGGYLADTPGFNQPSLMKITKQSLAQAFPEIRNKLLA 388
            EVS +  RG+HTTRHV L  L  GG LADTPGFNQP  +  + + L   FPE R +L  
Sbjct: 248 GEVSGKLARGRHTTRHVELFELPNGGLLADTPGFNQPD-VDCSPEELVHYFPEARERLAV 307

Query: 389 SEPAKCSFNDCLHLGEPGCVINGDWERYQYYFQLLDEIRIREEFQLRTFGTKREGDVRIK 448
              A C FNDCLH  EP C + GDWERY++Y + L +  I  + QL       E  +++K
Sbjct: 308 ---ASCRFNDCLHRDEPDCAVRGDWERYEHYLEFLAD-AIARQTQLYQ-QADPESTLKLK 367

Query: 449 VGDMGAQQAEPRLELKKHRRQSRKRVNQSILNELDELE 485
               G  Q EP+LE KK+RR SR+   Q + +   E E
Sbjct: 368 TKGKGQSQYEPKLESKKYRRTSRRTQVQGLQDLYQEEE 370

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BLAST of Cp4.1LG07g00380 vs. ExPASy Swiss-Prot
Match: B0JW21 (Small ribosomal subunit biogenesis GTPase RsgA OS=Microcystis aeruginosa (strain NIES-843) OX=449447 GN=rsgA PE=3 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.2e-67
Identity = 149/383 (38.90%), Postives = 217/383 (56.66%), Query Frame = 0


Query: 92  GTVAAAQANFMRVIVQSLPSQLSDSSNSDSERSGSLEGDSSDSSRLGIELLCVVKAVLKK 151
           GTV A QANF +V +                          DS+ +G  LLC  +A L+K
Sbjct: 11  GTVVAVQANFYQVRL--------------------------DSAVMGENLLCTRRARLQK 70

Query: 152 IKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSSEILDPPVANVDHLLVLFSIDQPKLEPF 211
           I + V+VGD+V V   ++ D++G I  V  RS+EI  P VAN++ +L++F++ +P L+P+
Sbjct: 71  IGQSVMVGDRVRVEEANFGDQQGAIAEVLPRSTEIDRPAVANIEQILLVFALAEPVLDPW 130

Query: 212 TLTRFLVEAESTGIPLTLGLNKLELVDEETVVSWKSRLRSWGYDPLFCSVQTRIGLDSLA 271
            ++RFLV+AESTG+ + + +NK++L + E +  W  RL  WGY P F SV+   G ++L 
Sbjct: 131 LISRFLVKAESTGLEIAVCVNKIDLGEPEQIEVWGDRLAGWGYRPFFVSVEKNRGFEALL 190

Query: 272 YILRDQTTVIVGPSGVGKSSLINALRSNNRAADAVEGDNWFDPIRDSKWFEDQRVAEVST 331
             L  + T++ GPSGVGKSSLIN L                          +QRV +VS 
Sbjct: 191 AQLNHKITLLAGPSGVGKSSLINCLIPE----------------------INQRVGDVSG 250

Query: 332 RSGRGKHTTRHVSLLPLMGGGYLADTPGFNQPSLMKITKQSLAQAFPEIRNKLLASEPAK 391
           +  +G+HTTRHV L  L   G LAD+PGFNQP +     + L   FPE+R +L       
Sbjct: 251 KLQKGRHTTRHVQLFALPNRGLLADSPGFNQPDI-NCLPEELTFYFPEVRARLAL---GN 310

Query: 392 CSFNDCLHLGEPGCVINGDWERYQYYFQLLDEIRIREEFQLRTFGTKREGDVRIKVGDMG 451
           C FNDC H  EP CV+ GDWERYQ+Y + L+E   RE+   +T  + +E  +++K+ + G
Sbjct: 311 CQFNDCTHRREPNCVVRGDWERYQHYLEFLEEAIAREQSLQKT--STKESSLKLKIKEAG 339

Query: 452 AQQAEPRLELKKHRRQSRKRVNQ 475
            +  EP+L  KK+RR SR+  NQ
Sbjct: 371 QETYEPKLANKKYRRPSRRGKNQ 339

[Close]

BLAST of Cp4.1LG07g00380 vs. NCBI nr
Match: XP_023536955.1 (small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 983 bits (2541), Expect = 0.0
Identity = 506/506 (100.00%), Postives = 506/506 (100.00%), Query Frame = 0


Query: 1   MAIASISILRHHSTSIAAIASVPAFGNILRRCFNVRCLSIVAKQHNPNNVSNKPPPSKNL 60
           MAIASISILRHHSTSIAAIASVPAFGNILRRCFNVRCLSIVAKQHNPNNVSNKPPPSKNL
Sbjct: 1   MAIASISILRHHSTSIAAIASVPAFGNILRRCFNVRCLSIVAKQHNPNNVSNKPPPSKNL 60

Query: 61  LRAKHTFKNYSSLAPVLSPQDIPPLSESQAIGTVAAAQANFMRVIVQSLPSQLSDSSNSD 120
           LRAKHTFKNYSSLAPVLSPQDIPPLSESQAIGTVAAAQANFMRVIVQSLPSQLSDSSNSD
Sbjct: 61  LRAKHTFKNYSSLAPVLSPQDIPPLSESQAIGTVAAAQANFMRVIVQSLPSQLSDSSNSD 120

Query: 121 SERSGSLEGDSSDSSRLGIELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF 180
           SERSGSLEGDSSDSSRLGIELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF
Sbjct: 121 SERSGSLEGDSSDSSRLGIELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF 180

Query: 181 QRSSEILDPPVANVDHLLVLFSIDQPKLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEE 240
           QRSSEILDPPVANVDHLLVLFSIDQPKLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEE
Sbjct: 181 QRSSEILDPPVANVDHLLVLFSIDQPKLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEE 240

Query: 241 TVVSWKSRLRSWGYDPLFCSVQTRIGLDSLAYILRDQTTVIVGPSGVGKSSLINALRSNN 300
           TVVSWKSRLRSWGYDPLFCSVQTRIGLDSLAYILRDQTTVIVGPSGVGKSSLINALRSNN
Sbjct: 241 TVVSWKSRLRSWGYDPLFCSVQTRIGLDSLAYILRDQTTVIVGPSGVGKSSLINALRSNN 300

Query: 301 RAADAVEGDNWFDPIRDSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLMGGGYLADTPGF 360
           RAADAVEGDNWFDPIRDSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLMGGGYLADTPGF
Sbjct: 301 RAADAVEGDNWFDPIRDSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLMGGGYLADTPGF 360

Query: 361 NQPSLMKITKQSLAQAFPEIRNKLLASEPAKCSFNDCLHLGEPGCVINGDWERYQYYFQL 420
           NQPSLMKITKQSLAQAFPEIRNKLLASEPAKCSFNDCLHLGEPGCVINGDWERYQYYFQL
Sbjct: 361 NQPSLMKITKQSLAQAFPEIRNKLLASEPAKCSFNDCLHLGEPGCVINGDWERYQYYFQL 420

Query: 421 LDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRKRVNQSILNEL 480
           LDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRKRVNQSILNEL
Sbjct: 421 LDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRKRVNQSILNEL 480

Query: 481 DELEDEDDDSLEEDDPILRAMRNENK 506
           DELEDEDDDSLEEDDPILRAMRNENK
Sbjct: 481 DELEDEDDDSLEEDDPILRAMRNENK 506

[Close]

BLAST of Cp4.1LG07g00380 vs. NCBI nr
Match: XP_022951811.1 (small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 975 bits (2520), Expect = 0.0
Identity = 500/506 (98.81%), Postives = 504/506 (99.60%), Query Frame = 0


Query: 1   MAIASISILRHHSTSIAAIASVPAFGNILRRCFNVRCLSIVAKQHNPNNVSNKPPPSKNL 60
           MAIASIS+LRHHSTSIAAIASVP FGN+LRRCFNVRCLSIVAKQHNPNNVSNKPPPSKNL
Sbjct: 1   MAIASISMLRHHSTSIAAIASVPGFGNVLRRCFNVRCLSIVAKQHNPNNVSNKPPPSKNL 60

Query: 61  LRAKHTFKNYSSLAPVLSPQDIPPLSESQAIGTVAAAQANFMRVIVQSLPSQLSDSSNSD 120
           LRAKHTFKNYSSLAPVLSPQDIPPLSESQAIGTVAAAQANFMRVIVQSLPSQLSDSSN+D
Sbjct: 61  LRAKHTFKNYSSLAPVLSPQDIPPLSESQAIGTVAAAQANFMRVIVQSLPSQLSDSSNND 120

Query: 121 SERSGSLEGDSSDSSRLGIELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF 180
           SERSGSLEGDS DSSRLGIELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF
Sbjct: 121 SERSGSLEGDSLDSSRLGIELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF 180

Query: 181 QRSSEILDPPVANVDHLLVLFSIDQPKLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEE 240
           QRSSEILDPPVANVDHLLVLFSI+QPKLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEE
Sbjct: 181 QRSSEILDPPVANVDHLLVLFSIEQPKLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEE 240

Query: 241 TVVSWKSRLRSWGYDPLFCSVQTRIGLDSLAYILRDQTTVIVGPSGVGKSSLINALRSNN 300
           TVVSWKSRLRSWGYDPLFCSVQTRIGLDSLAYILRDQTTVIVGPSGVGKSSLINALRSNN
Sbjct: 241 TVVSWKSRLRSWGYDPLFCSVQTRIGLDSLAYILRDQTTVIVGPSGVGKSSLINALRSNN 300

Query: 301 RAADAVEGDNWFDPIRDSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLMGGGYLADTPGF 360
           RAADAVEGDNWFDPIRDSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLMGGGYLADTPGF
Sbjct: 301 RAADAVEGDNWFDPIRDSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLMGGGYLADTPGF 360

Query: 361 NQPSLMKITKQSLAQAFPEIRNKLLASEPAKCSFNDCLHLGEPGCVINGDWERYQYYFQL 420
           NQPSLMKITKQSLAQAFPEIRNKLLASEPAKCSFNDCLHLGEPGCVINGDWERYQYYFQL
Sbjct: 361 NQPSLMKITKQSLAQAFPEIRNKLLASEPAKCSFNDCLHLGEPGCVINGDWERYQYYFQL 420

Query: 421 LDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRKRVNQSILNEL 480
           LDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRKRVNQSILNEL
Sbjct: 421 LDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRKRVNQSILNEL 480

Query: 481 DELEDEDDDSLEEDDPILRAMRNENK 506
           DELEDEDDDSLEEDDPILRAMRNENK
Sbjct: 481 DELEDEDDDSLEEDDPILRAMRNENK 506

[Close]

BLAST of Cp4.1LG07g00380 vs. NCBI nr
Match: KAG6585217.1 (Small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 970 bits (2508), Expect = 0.0
Identity = 498/506 (98.42%), Postives = 502/506 (99.21%), Query Frame = 0


Query: 1   MAIASISILRHHSTSIAAIASVPAFGNILRRCFNVRCLSIVAKQHNPNNVSNKPPPSKNL 60
           MAIASIS+LRHHSTSIAAIASVP FGN+LRRCFNVRCLSIVAKQHNPNNVSNKPPPSKNL
Sbjct: 64  MAIASISMLRHHSTSIAAIASVPGFGNVLRRCFNVRCLSIVAKQHNPNNVSNKPPPSKNL 123

Query: 61  LRAKHTFKNYSSLAPVLSPQDIPPLSESQAIGTVAAAQANFMRVIVQSLPSQLSDSSNSD 120
           LRAKHTFKNYSSLAPVLSPQDIPPLSESQAIGTVAAAQANFMRVIVQS PSQLSDSSN+D
Sbjct: 124 LRAKHTFKNYSSLAPVLSPQDIPPLSESQAIGTVAAAQANFMRVIVQSPPSQLSDSSNND 183

Query: 121 SERSGSLEGDSSDSSRLGIELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF 180
           SERSGSLEGDS DSSRLGIELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF
Sbjct: 184 SERSGSLEGDSLDSSRLGIELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF 243

Query: 181 QRSSEILDPPVANVDHLLVLFSIDQPKLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEE 240
           QRSSEILDPPVANVDHLLVLFSI+QPKLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEE
Sbjct: 244 QRSSEILDPPVANVDHLLVLFSIEQPKLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEE 303

Query: 241 TVVSWKSRLRSWGYDPLFCSVQTRIGLDSLAYILRDQTTVIVGPSGVGKSSLINALRSNN 300
           TVVSWKSRLRSWGYDPLFCSVQTR GLDSLAYILRDQTTVIVGPSGVGKSSLINALRSNN
Sbjct: 304 TVVSWKSRLRSWGYDPLFCSVQTRTGLDSLAYILRDQTTVIVGPSGVGKSSLINALRSNN 363

Query: 301 RAADAVEGDNWFDPIRDSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLMGGGYLADTPGF 360
           RAADAVEGDNWFDPIRDSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLMGGGYLADTPGF
Sbjct: 364 RAADAVEGDNWFDPIRDSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLMGGGYLADTPGF 423

Query: 361 NQPSLMKITKQSLAQAFPEIRNKLLASEPAKCSFNDCLHLGEPGCVINGDWERYQYYFQL 420
           NQPSLMKITKQSLAQAFPEIRNKLLASEPAKCSFNDCLHLGEPGCVINGDWERYQYYFQL
Sbjct: 424 NQPSLMKITKQSLAQAFPEIRNKLLASEPAKCSFNDCLHLGEPGCVINGDWERYQYYFQL 483

Query: 421 LDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRKRVNQSILNEL 480
           LDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRKRVNQSILNEL
Sbjct: 484 LDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRKRVNQSILNEL 543

Query: 481 DELEDEDDDSLEEDDPILRAMRNENK 506
           DELEDEDDDSLEEDDPILRAMRNENK
Sbjct: 544 DELEDEDDDSLEEDDPILRAMRNENK 569

[Close]

BLAST of Cp4.1LG07g00380 vs. NCBI nr
Match: XP_023002660.1 (small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial [Cucurbita maxima])

HSP 1 Score: 966 bits (2496), Expect = 0.0
Identity = 496/505 (98.22%), Postives = 501/505 (99.21%), Query Frame = 0


Query: 1   MAIASISILRHHSTSIAAIASVPAFGNILRRCFNVRCLSIVAKQHNPNNVSNKPPPSKNL 60
           MAIASIS+LRHHSTSIAAIASVPAFGN+LRRCFNVRCLS+VAKQHNPNNVSNKPPPSKNL
Sbjct: 1   MAIASISMLRHHSTSIAAIASVPAFGNVLRRCFNVRCLSVVAKQHNPNNVSNKPPPSKNL 60

Query: 61  LRAKHTFKNYSSLAPVLSPQDIPPLSESQAIGTVAAAQANFMRVIVQSLPSQLSDSSNSD 120
           LRAKHTFKNYSSLAPVLSPQDIPPLSESQAIGTVAAAQANFMRVIVQSLPS+LS SSN+D
Sbjct: 61  LRAKHTFKNYSSLAPVLSPQDIPPLSESQAIGTVAAAQANFMRVIVQSLPSRLSVSSNND 120

Query: 121 SERSGSLEGDSSDSSRLGIELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF 180
           SE SGS EGDSSDSSRLGIELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF
Sbjct: 121 SELSGSSEGDSSDSSRLGIELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF 180

Query: 181 QRSSEILDPPVANVDHLLVLFSIDQPKLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEE 240
           QRSSEILDPPVANVDHLLVLFSIDQPKLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEE
Sbjct: 181 QRSSEILDPPVANVDHLLVLFSIDQPKLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEE 240

Query: 241 TVVSWKSRLRSWGYDPLFCSVQTRIGLDSLAYILRDQTTVIVGPSGVGKSSLINALRSNN 300
           TVVSWKSRLRSWGYDPLFCSVQTRIGLDSLAYILRDQTTVIVGPSGVGKSSLINALRSNN
Sbjct: 241 TVVSWKSRLRSWGYDPLFCSVQTRIGLDSLAYILRDQTTVIVGPSGVGKSSLINALRSNN 300

Query: 301 RAADAVEGDNWFDPIRDSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLMGGGYLADTPGF 360
           RAADAVEGDNWFDPIRDSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLMGGGYLADTPGF
Sbjct: 301 RAADAVEGDNWFDPIRDSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLMGGGYLADTPGF 360

Query: 361 NQPSLMKITKQSLAQAFPEIRNKLLASEPAKCSFNDCLHLGEPGCVINGDWERYQYYFQL 420
           NQPSLMKITKQSLAQAFPEIRNKLLASEPAKCSFNDCLHLGEPGCVINGDWERYQYYFQL
Sbjct: 361 NQPSLMKITKQSLAQAFPEIRNKLLASEPAKCSFNDCLHLGEPGCVINGDWERYQYYFQL 420

Query: 421 LDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRKRVNQSILNEL 480
           LDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRKRVNQSILNEL
Sbjct: 421 LDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRKRVNQSILNEL 480

Query: 481 DELEDEDDDSLEEDDPILRAMRNEN 505
           DELEDEDDDS EEDDPILRAMRNEN
Sbjct: 481 DELEDEDDDSSEEDDPILRAMRNEN 505

[Close]

BLAST of Cp4.1LG07g00380 vs. NCBI nr
Match: XP_022132325.1 (small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial isoform X2 [Momordica charantia])

HSP 1 Score: 901 bits (2328), Expect = 0.0
Identity = 462/505 (91.49%), Postives = 484/505 (95.84%), Query Frame = 0


Query: 1   MAIASISILRHHSTSIAAIASVPAFGNILRRCFNVRCLSIVAKQHNPNNVSNKPPPSKNL 60
           MAIASIS+LRHH+   AA AS+PAFGN+LRR FNVRC S+VAKQHNPNNVSNKPPPSKNL
Sbjct: 1   MAIASISMLRHHTA--AATASIPAFGNVLRRFFNVRCFSVVAKQHNPNNVSNKPPPSKNL 60

Query: 61  LRAKHTFKNYSSLAPVLSPQDIPPLSESQAIGTVAAAQANFMRVIVQSLPSQLSDSSNSD 120
           LRAKHTFK+YSSLAP LSPQD PPLSESQAIGTVAAAQANFMRVIVQSLPSQLSDSSN D
Sbjct: 61  LRAKHTFKDYSSLAPALSPQDNPPLSESQAIGTVAAAQANFMRVIVQSLPSQLSDSSNQD 120

Query: 121 SERSGSLEGDSSDSSRLGIELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF 180
           SE SGSLEGDSS+SSRLG+ELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF
Sbjct: 121 SEPSGSLEGDSSESSRLGVELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF 180

Query: 181 QRSSEILDPPVANVDHLLVLFSIDQPKLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEE 240
           QRSSEILDPPVANVDHLLVLFS+DQPKLE FTLTRFL+EAESTGIPLTLGLNKLELVDEE
Sbjct: 181 QRSSEILDPPVANVDHLLVLFSMDQPKLESFTLTRFLIEAESTGIPLTLGLNKLELVDEE 240

Query: 241 TVVSWKSRLRSWGYDPLFCSVQTRIGLDSLAYILRDQTTVIVGPSGVGKSSLINALRSNN 300
           T+VSWKSRLRSWGY+PLFCSVQT+ GLDSLAYILRDQTTVIVGPSGVGKSSLINALR+N+
Sbjct: 241 TLVSWKSRLRSWGYEPLFCSVQTKTGLDSLAYILRDQTTVIVGPSGVGKSSLINALRNND 300

Query: 301 RAADAVEGDNWFDPIRDSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLMGGGYLADTPGF 360
           R  DAVEGDNWFDPI  SKWFEDQRVAEVSTRSGRGKHTTRHVSLLPL GGGYLADTPGF
Sbjct: 301 RGVDAVEGDNWFDPILGSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLSGGGYLADTPGF 360

Query: 361 NQPSLMKITKQSLAQAFPEIRNKLLASEPAKCSFNDCLHLGEPGCVINGDWERYQYYFQL 420
           NQPSLMKITKQSLAQAFPEI+  LLA+EPA+CSFNDCLHLGEPGCVI GDWERYQYYFQL
Sbjct: 361 NQPSLMKITKQSLAQAFPEIQKMLLANEPARCSFNDCLHLGEPGCVIKGDWERYQYYFQL 420

Query: 421 LDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRKRVNQSILNEL 480
           LDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRKRVNQSILNEL
Sbjct: 421 LDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRKRVNQSILNEL 480

Query: 481 DELEDED-DDSLEEDDPILRAMRNE 504
           DELEDED DDSL+++DPIL+AMRNE
Sbjct: 481 DELEDEDEDDSLDKEDPILKAMRNE 503

[Close]

BLAST of Cp4.1LG07g00380 vs. ExPASy TrEMBL
Match: A0A6J1GIJ0 (small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111454543 PE=3 SV=1)

HSP 1 Score: 975 bits (2520), Expect = 0.0
Identity = 500/506 (98.81%), Postives = 504/506 (99.60%), Query Frame = 0


Query: 1   MAIASISILRHHSTSIAAIASVPAFGNILRRCFNVRCLSIVAKQHNPNNVSNKPPPSKNL 60
           MAIASIS+LRHHSTSIAAIASVP FGN+LRRCFNVRCLSIVAKQHNPNNVSNKPPPSKNL
Sbjct: 1   MAIASISMLRHHSTSIAAIASVPGFGNVLRRCFNVRCLSIVAKQHNPNNVSNKPPPSKNL 60

Query: 61  LRAKHTFKNYSSLAPVLSPQDIPPLSESQAIGTVAAAQANFMRVIVQSLPSQLSDSSNSD 120
           LRAKHTFKNYSSLAPVLSPQDIPPLSESQAIGTVAAAQANFMRVIVQSLPSQLSDSSN+D
Sbjct: 61  LRAKHTFKNYSSLAPVLSPQDIPPLSESQAIGTVAAAQANFMRVIVQSLPSQLSDSSNND 120

Query: 121 SERSGSLEGDSSDSSRLGIELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF 180
           SERSGSLEGDS DSSRLGIELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF
Sbjct: 121 SERSGSLEGDSLDSSRLGIELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF 180

Query: 181 QRSSEILDPPVANVDHLLVLFSIDQPKLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEE 240
           QRSSEILDPPVANVDHLLVLFSI+QPKLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEE
Sbjct: 181 QRSSEILDPPVANVDHLLVLFSIEQPKLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEE 240

Query: 241 TVVSWKSRLRSWGYDPLFCSVQTRIGLDSLAYILRDQTTVIVGPSGVGKSSLINALRSNN 300
           TVVSWKSRLRSWGYDPLFCSVQTRIGLDSLAYILRDQTTVIVGPSGVGKSSLINALRSNN
Sbjct: 241 TVVSWKSRLRSWGYDPLFCSVQTRIGLDSLAYILRDQTTVIVGPSGVGKSSLINALRSNN 300

Query: 301 RAADAVEGDNWFDPIRDSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLMGGGYLADTPGF 360
           RAADAVEGDNWFDPIRDSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLMGGGYLADTPGF
Sbjct: 301 RAADAVEGDNWFDPIRDSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLMGGGYLADTPGF 360

Query: 361 NQPSLMKITKQSLAQAFPEIRNKLLASEPAKCSFNDCLHLGEPGCVINGDWERYQYYFQL 420
           NQPSLMKITKQSLAQAFPEIRNKLLASEPAKCSFNDCLHLGEPGCVINGDWERYQYYFQL
Sbjct: 361 NQPSLMKITKQSLAQAFPEIRNKLLASEPAKCSFNDCLHLGEPGCVINGDWERYQYYFQL 420

Query: 421 LDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRKRVNQSILNEL 480
           LDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRKRVNQSILNEL
Sbjct: 421 LDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRKRVNQSILNEL 480

Query: 481 DELEDEDDDSLEEDDPILRAMRNENK 506
           DELEDEDDDSLEEDDPILRAMRNENK
Sbjct: 481 DELEDEDDDSLEEDDPILRAMRNENK 506

[Close]

BLAST of Cp4.1LG07g00380 vs. ExPASy TrEMBL
Match: A0A6J1KPK6 (small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111496452 PE=3 SV=1)

HSP 1 Score: 966 bits (2496), Expect = 0.0
Identity = 496/505 (98.22%), Postives = 501/505 (99.21%), Query Frame = 0


Query: 1   MAIASISILRHHSTSIAAIASVPAFGNILRRCFNVRCLSIVAKQHNPNNVSNKPPPSKNL 60
           MAIASIS+LRHHSTSIAAIASVPAFGN+LRRCFNVRCLS+VAKQHNPNNVSNKPPPSKNL
Sbjct: 1   MAIASISMLRHHSTSIAAIASVPAFGNVLRRCFNVRCLSVVAKQHNPNNVSNKPPPSKNL 60

Query: 61  LRAKHTFKNYSSLAPVLSPQDIPPLSESQAIGTVAAAQANFMRVIVQSLPSQLSDSSNSD 120
           LRAKHTFKNYSSLAPVLSPQDIPPLSESQAIGTVAAAQANFMRVIVQSLPS+LS SSN+D
Sbjct: 61  LRAKHTFKNYSSLAPVLSPQDIPPLSESQAIGTVAAAQANFMRVIVQSLPSRLSVSSNND 120

Query: 121 SERSGSLEGDSSDSSRLGIELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF 180
           SE SGS EGDSSDSSRLGIELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF
Sbjct: 121 SELSGSSEGDSSDSSRLGIELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF 180

Query: 181 QRSSEILDPPVANVDHLLVLFSIDQPKLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEE 240
           QRSSEILDPPVANVDHLLVLFSIDQPKLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEE
Sbjct: 181 QRSSEILDPPVANVDHLLVLFSIDQPKLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEE 240

Query: 241 TVVSWKSRLRSWGYDPLFCSVQTRIGLDSLAYILRDQTTVIVGPSGVGKSSLINALRSNN 300
           TVVSWKSRLRSWGYDPLFCSVQTRIGLDSLAYILRDQTTVIVGPSGVGKSSLINALRSNN
Sbjct: 241 TVVSWKSRLRSWGYDPLFCSVQTRIGLDSLAYILRDQTTVIVGPSGVGKSSLINALRSNN 300

Query: 301 RAADAVEGDNWFDPIRDSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLMGGGYLADTPGF 360
           RAADAVEGDNWFDPIRDSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLMGGGYLADTPGF
Sbjct: 301 RAADAVEGDNWFDPIRDSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLMGGGYLADTPGF 360

Query: 361 NQPSLMKITKQSLAQAFPEIRNKLLASEPAKCSFNDCLHLGEPGCVINGDWERYQYYFQL 420
           NQPSLMKITKQSLAQAFPEIRNKLLASEPAKCSFNDCLHLGEPGCVINGDWERYQYYFQL
Sbjct: 361 NQPSLMKITKQSLAQAFPEIRNKLLASEPAKCSFNDCLHLGEPGCVINGDWERYQYYFQL 420

Query: 421 LDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRKRVNQSILNEL 480
           LDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRKRVNQSILNEL
Sbjct: 421 LDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRKRVNQSILNEL 480

Query: 481 DELEDEDDDSLEEDDPILRAMRNEN 505
           DELEDEDDDS EEDDPILRAMRNEN
Sbjct: 481 DELEDEDDDSSEEDDPILRAMRNEN 505

[Close]

BLAST of Cp4.1LG07g00380 vs. ExPASy TrEMBL
Match: A0A6J1BS55 (small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial isoform X2 OS=Momordica charantia OX=3673 GN=LOC111005203 PE=3 SV=1)

HSP 1 Score: 901 bits (2328), Expect = 0.0
Identity = 462/505 (91.49%), Postives = 484/505 (95.84%), Query Frame = 0


Query: 1   MAIASISILRHHSTSIAAIASVPAFGNILRRCFNVRCLSIVAKQHNPNNVSNKPPPSKNL 60
           MAIASIS+LRHH+   AA AS+PAFGN+LRR FNVRC S+VAKQHNPNNVSNKPPPSKNL
Sbjct: 1   MAIASISMLRHHTA--AATASIPAFGNVLRRFFNVRCFSVVAKQHNPNNVSNKPPPSKNL 60

Query: 61  LRAKHTFKNYSSLAPVLSPQDIPPLSESQAIGTVAAAQANFMRVIVQSLPSQLSDSSNSD 120
           LRAKHTFK+YSSLAP LSPQD PPLSESQAIGTVAAAQANFMRVIVQSLPSQLSDSSN D
Sbjct: 61  LRAKHTFKDYSSLAPALSPQDNPPLSESQAIGTVAAAQANFMRVIVQSLPSQLSDSSNQD 120

Query: 121 SERSGSLEGDSSDSSRLGIELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF 180
           SE SGSLEGDSS+SSRLG+ELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF
Sbjct: 121 SEPSGSLEGDSSESSRLGVELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF 180

Query: 181 QRSSEILDPPVANVDHLLVLFSIDQPKLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEE 240
           QRSSEILDPPVANVDHLLVLFS+DQPKLE FTLTRFL+EAESTGIPLTLGLNKLELVDEE
Sbjct: 181 QRSSEILDPPVANVDHLLVLFSMDQPKLESFTLTRFLIEAESTGIPLTLGLNKLELVDEE 240

Query: 241 TVVSWKSRLRSWGYDPLFCSVQTRIGLDSLAYILRDQTTVIVGPSGVGKSSLINALRSNN 300
           T+VSWKSRLRSWGY+PLFCSVQT+ GLDSLAYILRDQTTVIVGPSGVGKSSLINALR+N+
Sbjct: 241 TLVSWKSRLRSWGYEPLFCSVQTKTGLDSLAYILRDQTTVIVGPSGVGKSSLINALRNND 300

Query: 301 RAADAVEGDNWFDPIRDSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLMGGGYLADTPGF 360
           R  DAVEGDNWFDPI  SKWFEDQRVAEVSTRSGRGKHTTRHVSLLPL GGGYLADTPGF
Sbjct: 301 RGVDAVEGDNWFDPILGSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLSGGGYLADTPGF 360

Query: 361 NQPSLMKITKQSLAQAFPEIRNKLLASEPAKCSFNDCLHLGEPGCVINGDWERYQYYFQL 420
           NQPSLMKITKQSLAQAFPEI+  LLA+EPA+CSFNDCLHLGEPGCVI GDWERYQYYFQL
Sbjct: 361 NQPSLMKITKQSLAQAFPEIQKMLLANEPARCSFNDCLHLGEPGCVIKGDWERYQYYFQL 420

Query: 421 LDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRKRVNQSILNEL 480
           LDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRKRVNQSILNEL
Sbjct: 421 LDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRKRVNQSILNEL 480

Query: 481 DELEDED-DDSLEEDDPILRAMRNE 504
           DELEDED DDSL+++DPIL+AMRNE
Sbjct: 481 DELEDEDEDDSLDKEDPILKAMRNE 503

[Close]

BLAST of Cp4.1LG07g00380 vs. ExPASy TrEMBL
Match: A0A6J1BSR6 (small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial isoform X1 OS=Momordica charantia OX=3673 GN=LOC111005203 PE=3 SV=1)

HSP 1 Score: 896 bits (2316), Expect = 0.0
Identity = 462/506 (91.30%), Postives = 484/506 (95.65%), Query Frame = 0


Query: 1   MAIASISILRHHSTSIAAIASVPAFGNILRRCFNVRCLSIVAKQHNPNNVSNKPPPSKNL 60
           MAIASIS+LRHH+   AA AS+PAFGN+LRR FNVRC S+VAKQHNPNNVSNKPPPSKNL
Sbjct: 1   MAIASISMLRHHTA--AATASIPAFGNVLRRFFNVRCFSVVAKQHNPNNVSNKPPPSKNL 60

Query: 61  LRAKHTFKNYSSLAPVLSPQDIPPLSESQAIGTVAAAQANFMRVIVQSLPSQLSDSSNSD 120
           LRAKHTFK+YSSLAP LSPQD PPLSESQAIGTVAAAQANFMRVIVQSLPSQLSDSSN D
Sbjct: 61  LRAKHTFKDYSSLAPALSPQDNPPLSESQAIGTVAAAQANFMRVIVQSLPSQLSDSSNQD 120

Query: 121 SERSGSLEGDSSDSSRLGIELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF 180
           SE SGSLEGDSS+SSRLG+ELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF
Sbjct: 121 SEPSGSLEGDSSESSRLGVELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF 180

Query: 181 QRSSEILDPPVANVDHLLVLFSIDQPKLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEE 240
           QRSSEILDPPVANVDHLLVLFS+DQPKLE FTLTRFL+EAESTGIPLTLGLNKLELVDEE
Sbjct: 181 QRSSEILDPPVANVDHLLVLFSMDQPKLESFTLTRFLIEAESTGIPLTLGLNKLELVDEE 240

Query: 241 TVVSWKSRLRSWGYDPLFCSVQTRIGLDSLAYILRDQTTVIVGPSGVGKSSLINALRSNN 300
           T+VSWKSRLRSWGY+PLFCSVQT+ GLDSLAYILRDQTTVIVGPSGVGKSSLINALR+N+
Sbjct: 241 TLVSWKSRLRSWGYEPLFCSVQTKTGLDSLAYILRDQTTVIVGPSGVGKSSLINALRNND 300

Query: 301 RAADAVEGDNWFDP-IRDSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLMGGGYLADTPG 360
           R  DAVEGDNWFDP I  SKWFEDQRVAEVSTRSGRGKHTTRHVSLLPL GGGYLADTPG
Sbjct: 301 RGVDAVEGDNWFDPQILGSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLSGGGYLADTPG 360

Query: 361 FNQPSLMKITKQSLAQAFPEIRNKLLASEPAKCSFNDCLHLGEPGCVINGDWERYQYYFQ 420
           FNQPSLMKITKQSLAQAFPEI+  LLA+EPA+CSFNDCLHLGEPGCVI GDWERYQYYFQ
Sbjct: 361 FNQPSLMKITKQSLAQAFPEIQKMLLANEPARCSFNDCLHLGEPGCVIKGDWERYQYYFQ 420

Query: 421 LLDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRKRVNQSILNE 480
           LLDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRKRVNQSILNE
Sbjct: 421 LLDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRKRVNQSILNE 480

Query: 481 LDELEDED-DDSLEEDDPILRAMRNE 504
           LDELEDED DDSL+++DPIL+AMRNE
Sbjct: 481 LDELEDEDEDDSLDKEDPILKAMRNE 504

[Close]

BLAST of Cp4.1LG07g00380 vs. ExPASy TrEMBL
Match: A0A5A7VEI9 (Putative ribosome biogenesis GTPase RsgA 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G00400 PE=3 SV=1)

HSP 1 Score: 879 bits (2270), Expect = 0.0
Identity = 450/506 (88.93%), Postives = 474/506 (93.68%), Query Frame = 0


Query: 1   MAIASISILRHHSTSIAAIASVPAFGNILRRCFNVRCLSIVAKQHNPNNVSNKPPPSKNL 60
           MAIASIS+LRHH+ ++AA +S P FGN++RR F  RC SIVAKQHNPNNVSNKPPPSKNL
Sbjct: 1   MAIASISMLRHHTAALAATSSFPVFGNVIRRVFKFRCFSIVAKQHNPNNVSNKPPPSKNL 60

Query: 61  LRAKHTFKNYSSLAPVLSPQDIPPLSESQAIGTVAAAQANFMRVIVQSLPSQLSDSSNSD 120
           LRAKHTFK+YSSLAPVLSPQD PPLSESQAIGTVAAAQANFMRVIVQ+LPSQ S+SSN D
Sbjct: 61  LRAKHTFKDYSSLAPVLSPQDNPPLSESQAIGTVAAAQANFMRVIVQTLPSQFSESSNDD 120

Query: 121 SERSGSLEGDSSDSSRLGIELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF 180
            ERSGSLE DSS+SS LG+ELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF
Sbjct: 121 LERSGSLENDSSESSMLGVELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF 180

Query: 181 QRSSEILDPPVANVDHLLVLFSIDQPKLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEE 240
           QR SEILDPPVANVDHLLVLFS+DQP+LEPFTLTRFLVEAESTGIPLTLGLNKLELVDEE
Sbjct: 181 QRKSEILDPPVANVDHLLVLFSMDQPRLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEE 240

Query: 241 TVVSWKSRLRSWGYDPLFCSVQTRIGLDSLAYILRDQTTVIVGPSGVGKSSLINALRSNN 300
           TVVSWKSRLRSWGYDPLFCSVQT  GLD+LAYILRDQTTVIVGPSGVGKSSLINALR+NN
Sbjct: 241 TVVSWKSRLRSWGYDPLFCSVQTGTGLDTLAYILRDQTTVIVGPSGVGKSSLINALRNNN 300

Query: 301 RAADAVEGDNWFDPIRDSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLMGGGYLADTPGF 360
           RAADA++ DNWFDPI  SKWFEDQRVAEVSTRSGRGKHTTRHVSLLPL GGGYLADTPGF
Sbjct: 301 RAADALDTDNWFDPILGSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLTGGGYLADTPGF 360

Query: 361 NQPSLMKITKQSLAQAFPEIRNKLLASEPAKCSFNDCLHLGEPGCVINGDWERYQYYFQL 420
           NQPSLMKITKQSLAQAFPEI+  L ASEPAKCSFNDCLHLGEPGC+I GDWERYQYYFQL
Sbjct: 361 NQPSLMKITKQSLAQAFPEIQKMLRASEPAKCSFNDCLHLGEPGCIIKGDWERYQYYFQL 420

Query: 421 LDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRKRVNQSILNEL 480
           LDEIRIREEFQLRTFGTKREGDVRIKVG MGAQQAEPRLELKKHRRQSRKRVNQSIL+EL
Sbjct: 421 LDEIRIREEFQLRTFGTKREGDVRIKVGVMGAQQAEPRLELKKHRRQSRKRVNQSILDEL 480

Query: 481 DELEDEDDDSLEEDDPILRAMRNENK 506
           DE    D+D LEE DPILRAM+NEN+
Sbjct: 481 DE----DEDDLEETDPILRAMKNENQ 502

[Close]

BLAST of Cp4.1LG07g00380 vs. TAIR 10
Match: AT1G67440.1 (Minichromosome maintenance (MCM2/3/5) family protein )

HSP 1 Score: 621.3 bits (1601), Expect = 6.8e-178
Identity = 321/448 (71.65%), Postives = 368/448 (82.14%), Query Frame = 0


Query: 60  LLRAKHTFKNY-SSLAPVLSPQDIPPLSESQAIGTVAAAQANFMRVIVQSLPSQLSDSSN 119
           +LRAKH  KNY SSL+PVLSP+  P L ESQAIGTVA AQANFMRVIVQ     +++S  
Sbjct: 1   MLRAKHIGKNYSSSLSPVLSPEHKPSLLESQAIGTVATAQANFMRVIVQ----DVANSVT 60

Query: 120 SDSERSGSLEGDSSDSSRLGIELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIEN 179
           SD         D +DSS+ G+ELLCVV+AVLKKI+RRVLVGDKV+VGSIDWVDRRGMIEN
Sbjct: 61  SD---------DDNDSSKTGVELLCVVRAVLKKIRRRVLVGDKVLVGSIDWVDRRGMIEN 120

Query: 180 VFQRSSEILDPPVANVDHLLVLFSIDQPKLEPFTLTRFLVEAESTGIPLTLGLNKLELVD 239
           VF R SEILDPPVANVDHLLVLFS+DQPKLEPFTLTRFLVEAEST IPLTL LNK EL+ 
Sbjct: 121 VFHRRSEILDPPVANVDHLLVLFSLDQPKLEPFTLTRFLVEAESTRIPLTLALNKTELIS 180

Query: 240 EETVVSWKSRLRSWGYDPLFCSVQTRIGLDSLAYILRDQTTVIVGPSGVGKSSLINALRS 299
           EE + +WK RLR W Y+PLFCSV T+ GLD +A++LRDQT+VIVGPSGVGKSSLIN LRS
Sbjct: 181 EEELETWKIRLRGWNYEPLFCSVGTKDGLDDIAFVLRDQTSVIVGPSGVGKSSLINVLRS 240

Query: 300 NNRAADAVEGDNWFDPIRDSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLMGGGYLADTP 359
           N+     VE +NWF+P+  +KWF+DQRV EVS+RSGRGKHTTR+VSLLP+  GGYLADTP
Sbjct: 241 NH-GGGVVEDENWFEPMLGNKWFDDQRVGEVSSRSGRGKHTTRNVSLLPVSEGGYLADTP 300

Query: 360 GFNQPSLMKITKQSLAQAFPEIRNKLLASEPAKCSFNDCLHLGEPGCVINGDWERYQYYF 419
           GFNQPSL+K+TK SLA  FPEIRN +   E  KC F DCLH+GEPGCV+ GDWERY YY 
Sbjct: 301 GFNQPSLLKVTKHSLAHCFPEIRNMI---ESEKCGFRDCLHIGEPGCVVKGDWERYPYYL 360

Query: 420 QLLDEIRIREEFQLRTFGTKREGDVRIKVGDMGAQQAEPRLELKKHRRQSRKRVNQSILN 479
           QLLDEIRIREEFQLRTFGTKRE DVR KVGDMG + AEPRL  KKHRR+SRK+  Q++++
Sbjct: 361 QLLDEIRIREEFQLRTFGTKREDDVRYKVGDMGVKHAEPRLMPKKHRRESRKKTKQTMIS 420

Query: 480 ELDELEDEDDDSLEEDDPILRAMRNENK 507
           ELDE EDED D   E+DPI++A+ NENK
Sbjct: 421 ELDEFEDEDSDLYIENDPIVQAIENENK 431

[Close]

BLAST of Cp4.1LG07g00380 vs. TAIR 10
Match: AT1G67460.1 (Minichromosome maintenance (MCM2/3/5) family protein )

HSP 1 Score: 286.2 bits (731), Expect = 5.2e-77
Identity = 158/275 (57.45%), Postives = 196/275 (71.27%), Query Frame = 0


Query: 25  FGNILRRCFNVRCLSIVAKQHNPNNVSNKPPPSKNLLRAKHTFKNYSSLAPVLSPQDIPP 84
           FG  LR   +   LS + +Q NP NV+  P P+K +LR        S LAPVL   + P 
Sbjct: 24  FGTGLRIRRSFYFLSAI-RQENP-NVTKNPHPNKTILR--------SFLAPVLPLDEKPN 83

Query: 85  LSESQAIGTVAAAQANFMRVIVQSLPSQLSDSSNSDSERSGSLEGDSSDSSRLGIELLCV 144
           L E QAIGT+A A A++MRVIVQ +P                 E D+ +  ++G+ELLCV
Sbjct: 84  LVELQAIGTIATALADYMRVIVQDVP-----------------ESDNGEDDKIGVELLCV 143

Query: 145 VKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSSEILDPPVANVDHLLVLFSID 204
           V+ +LKKI R VLVGDKV+V  +DWVDRR  I NVF R SE+LDPPVANVDHL++LFS+D
Sbjct: 144 VRKLLKKIGRTVLVGDKVLVDKVDWVDRRAKIINVFDRVSEVLDPPVANVDHLVILFSLD 203

Query: 205 QPKLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEETVVSWKSRLRSWGYDPLFCSVQTR 264
           QPK++PFTLTRFLVEAES GI +T+ LNK ELV +E V SWK RLRSW Y+PLFCSV T+
Sbjct: 204 QPKIDPFTLTRFLVEAESIGIRITVALNKCELVTQEEVESWKIRLRSWNYEPLFCSVGTK 263

Query: 265 IGLDSLAYILRDQTTVIVGPSGVGKSSLINALRSN 300
           +G+D +A+ LR+QT+VIVGPSGVGKSSLIN LRS+
Sbjct: 264 VGIDEIAFNLRNQTSVIVGPSGVGKSSLINILRSS 271

The following BLAST results are available for this feature:

BLAST of Cp4.1LG07g00380 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4V399	9.5e-177	71.65	Small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial OS=Arabidopsis t...	[more]
F4HTL8	7.3e-76	57.45	Small ribosomal subunit biogenesis GTPase RsgA 2, mitochondrial OS=Arabidopsis t...	[more]
Q8YUA3	6.0e-70	41.46	Small ribosomal subunit biogenesis GTPase RsgA 1 OS=Nostoc sp. (strain PCC 7120 ...	[more]
Q3MG79	6.0e-70	42.21	Small ribosomal subunit biogenesis GTPase RsgA OS=Trichormus variabilis (strain ...	[more]
B0JW21	1.2e-67	38.90	Small ribosomal subunit biogenesis GTPase RsgA OS=Microcystis aeruginosa (strain...	[more]

BLAST of Cp4.1LG07g00380 vs. NCBI nr


Match Name	Identity	Description
XP_023536955.1	100.00	small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial [Cucurbita pepo ...	[more]
XP_022951811.1	98.81	small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial-like [Cucurbita ...	[more]
KAG6585217.1	98.42	Small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial, partial [Cucurb...	[more]
XP_023002660.1	98.22	small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial [Cucurbita maxim...	[more]
XP_022132325.1	91.49	small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial isoform X2 [Momo...	[more]

BLAST of Cp4.1LG07g00380 vs. ExPASy TrEMBL


Match Name	Identity	Description
A0A6J1GIJ0	98.81	small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial-like OS=Cucurbit...	[more]
A0A6J1KPK6	98.22	small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial OS=Cucurbita max...	[more]
A0A6J1BS55	91.49	small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial isoform X2 OS=Mo...	[more]
A0A6J1BSR6	91.30	small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial isoform X1 OS=Mo...	[more]
A0A5A7VEI9	88.93	Putative ribosome biogenesis GTPase RsgA 1 OS=Cucumis melo var. makuwa OX=119469...	[more]

BLAST of Cp4.1LG07g00380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67440.1	6.8e-178	71.65	Minichromosome maintenance (MCM2/3/5) family protein	[more]
AT1G67460.1	5.2e-77	57.45	Minichromosome maintenance (MCM2/3/5) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 466..493
None	No IPR available	GENE3D	1.10.40.50	Probable gtpase engc; domain 3	coord: 367..429 e-value: 3.4E-13 score: 50.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 479..494
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 112..134
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 112..133
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 461..506
None	No IPR available	PANTHER	PTHR32120:SF11	SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA 1, MITOCHONDRIAL-RELATED	coord: 82..488
IPR004881	Ribosome biogenesis GTPase RsgA	TIGRFAM	TIGR00157	TIGR00157	coord: 156..300 e-value: 7.3E-35 score: 118.6
IPR004881	Ribosome biogenesis GTPase RsgA	PANTHER	PTHR32120	SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA	coord: 82..488
IPR004881	Ribosome biogenesis GTPase RsgA	HAMAP	MF_01820	GTPase_RsgA	coord: 90..428 score: 29.526379
IPR004881	Ribosome biogenesis GTPase RsgA	CDD	cd01854	YjeQ_EngC	coord: 192..422 e-value: 1.4295E-79 score: 245.385
IPR010914	RsgA GTPase domain	PFAM	PF03193	RsgA_GTPase	coord: 179..365 e-value: 9.9E-57 score: 191.5
IPR010914	RsgA GTPase domain	PROSITE	PS50936	ENGC_GTPASE	coord: 192..361 score: 41.306122
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 178..365 e-value: 1.4E-47 score: 163.4
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 186..428
IPR030378	Circularly permuted (CP)-type guanine nucleotide-binding (G) domain	PROSITE	PS51721	G_CP	coord: 183..363 score: 49.880344
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 92..182

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG07g00380.1	Cp4.1LG07g00380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding