Cp4.1LG06g06840 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG06g06840
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Squamosa promoter-binding protein
Location	Cp4.1LG06: 4221309 .. 4221988 (-)
RNA-Seq Expression	Cp4.1LG06g06840
Synteny	Cp4.1LG06g06840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCAAAGAGCTATGAAGGCAAGCATAATCTTAAAGATAAGGCGTATAAGGAAGGTGTGATCGACGACGATTTAGAATACGAGACAGAGGAGGAAGACGTTGGCGGAGGAGGCCATGGTGGTACCAATGCTTGCACTGCATTGGGTTATTACGAGAACGAGAAGAAGAAAAGAGGGACAGCAGTTTCTGGCCGTGGACGATCTGGTAGCGGCGTCTCTTCGCCGAGTTGCCAAGCACACAACTGCACAACAGATTTGAGTGAAGCAAAGAGGTATCACCGTCGCCACAAGGTCTGCGAGTTTCACTCGAAGGCAGCCGTCGTCATGGTCGCAGGAATTCGCCAACGTTTCTGTCAGCAATGCAGCAGGTAATTCATCCTCTTGAACAACATAAACAAGAACACTTCAGTTAACATTCAACCCTCTTCTTTTTGGCTAGGTTCCATGAGTTGACAGAATTCGACGAAGCTAAAAGGAGCTGTCGTCGGAGGCTAGCAGGGCATAACGAACGACGAAGGAAGAGCTCGGCCGAGTGTCAAGGAGAAAGCACGAACCGTAAAGGATCAGTGTCGCAGTCGAAGGAAGGCCATTGCAGGCAGCTAATGGAAGATCAAAGAAGCAGAATTCAGATGGCTCCTACAGGAAGCTCTGGCTATAAACACCTGCATATCAGATAA

mRNA sequence

ATGGAGGCAAAGAGCTATGAAGGCAAGCATAATCTTAAAGATAAGGCGTATAAGGAAGGTGTGATCGACGACGATTTAGAATACGAGACAGAGGAGGAAGACGTTGGCGGAGGAGGCCATGGTGGTACCAATGCTTGCACTGCATTGGGTTATTACGAGAACGAGAAGAAGAAAAGAGGGACAGCAGTTTCTGGCCGTGGACGATCTGGTAGCGGCGTCTCTTCGCCGAGTTGCCAAGCACACAACTGCACAACAGATTTGAGTGAAGCAAAGAGGTATCACCGTCGCCACAAGGTCTGCGAGTTTCACTCGAAGGCAGCCGTCGTCATGGTCGCAGGAATTCGCCAACGTTTCTGTCAGCAATGCAGCAGGTTCCATGAGTTGACAGAATTCGACGAAGCTAAAAGGAGCTGTCGTCGGAGGCTAGCAGGGCATAACGAACGACGAAGGAAGAGCTCGGCCGAGTGTCAAGGAGAAAGCACGAACCGTAAAGGATCAGTGTCGCAGTCGAAGGAAGGCCATTGCAGGCAGCTAATGGAAGATCAAAGAAGCAGAATTCAGATGGCTCCTACAGGAAGCTCTGGCTATAAACACCTGCATATCAGATAA

Coding sequence (CDS)

ATGGAGGCAAAGAGCTATGAAGGCAAGCATAATCTTAAAGATAAGGCGTATAAGGAAGGTGTGATCGACGACGATTTAGAATACGAGACAGAGGAGGAAGACGTTGGCGGAGGAGGCCATGGTGGTACCAATGCTTGCACTGCATTGGGTTATTACGAGAACGAGAAGAAGAAAAGAGGGACAGCAGTTTCTGGCCGTGGACGATCTGGTAGCGGCGTCTCTTCGCCGAGTTGCCAAGCACACAACTGCACAACAGATTTGAGTGAAGCAAAGAGGTATCACCGTCGCCACAAGGTCTGCGAGTTTCACTCGAAGGCAGCCGTCGTCATGGTCGCAGGAATTCGCCAACGTTTCTGTCAGCAATGCAGCAGGTTCCATGAGTTGACAGAATTCGACGAAGCTAAAAGGAGCTGTCGTCGGAGGCTAGCAGGGCATAACGAACGACGAAGGAAGAGCTCGGCCGAGTGTCAAGGAGAAAGCACGAACCGTAAAGGATCAGTGTCGCAGTCGAAGGAAGGCCATTGCAGGCAGCTAATGGAAGATCAAAGAAGCAGAATTCAGATGGCTCCTACAGGAAGCTCTGGCTATAAACACCTGCATATCAGATAA

Protein sequence

MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRGTAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQQCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSVSQSKEGHCRQLMEDQRSRIQMAPTGSSGYKHLHIR

Homology

[Close]

BLAST of Cp4.1LG06g06840 vs. ExPASy Swiss-Prot
Match: Q9S7A9 (Squamosa promoter-binding-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=SPL4 PE=1 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.1e-34
Identity = 92/203 (45.32%), Postives = 119/203 (58.62%), Query Frame = 0


Query: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60
           ME K  +G+  +K K+Y   ++++D+E +T+EE+  G                     R 
Sbjct: 1   MEGKRSQGQGYMKKKSY---LVEEDMETDTDEEEEVG---------------------RD 60

Query: 61  TAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120
                RG    G S   CQ   CT D+ EAK YHRRHKVCE H+KA+ V ++G+ QRFCQ
Sbjct: 61  RVRGSRGSINRGGSLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQ 120

Query: 121 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSVSQSKEGHCRQLME 180
           QCSRFH+L EFDEAKRSCRRRLAGHNERRRKSS    GEST  +GS  +   G    +  
Sbjct: 121 QCSRFHDLQEFDEAKRSCRRRLAGHNERRRKSS----GESTYGEGSGRRGINGQV-VMQN 174

Query: 181 DQRSRIQMA-PTGSSGYKHLHIR 203
            +RSR++M  P  +S +K   IR
Sbjct: 181 QERSRVEMTLPMPNSSFKRPQIR 174

[Close]

BLAST of Cp4.1LG06g06840 vs. ExPASy Swiss-Prot
Match: Q9S758 (Squamosa promoter-binding-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=SPL5 PE=2 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 4.7e-34
Identity = 88/203 (43.35%), Postives = 120/203 (59.11%), Query Frame = 0


Query: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60
           ME +  + +  LKDKA    ++++++E   + E+  GG               +E K++ 
Sbjct: 1   MEGQRTQRRGYLKDKATVSNLVEEEMENGMDGEEEDGG---------------DEDKRKK 60

Query: 61  TAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120
                RG S   V S  CQ   CT +L+EAK+Y+RRH+VCE H+KA+   VAG+RQRFCQ
Sbjct: 61  VMERVRGPSTDRVPSRLCQVDRCTVNLTEAKQYYRRHRVCEVHAKASAATVAGVRQRFCQ 120

Query: 121 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSVSQSKEGHCRQLME 180
           QCSRFHEL EFDEAKRSCRRRLAGHNERRRK S +  GE + R+G   Q        +  
Sbjct: 121 QCSRFHELPEFDEAKRSCRRRLAGHNERRRKISGDSFGEGSGRRGFSGQ-------LIQT 180

Query: 181 DQRSRI-QMAPTGSSGYKHLHIR 203
            +R+R+ +  P  +S +K   IR
Sbjct: 181 QERNRVDRKLPMTNSSFKRPQIR 181

[Close]

BLAST of Cp4.1LG06g06840 vs. ExPASy Swiss-Prot
Match: Q6Z461 (Squamosa promoter-binding-like protein 13 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL13 PE=2 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.3e-33
Identity = 75/127 (59.06%), Postives = 87/127 (68.50%), Query Frame = 0


Query: 36  GGGGHGGTNACTALGYYENEKK-------KRGTAVSGRGRSGSGVSSPSCQAHNCTTDLS 95
           GGGG   ++A  A G   +          +RG   +G G    G   P CQ   C  DLS
Sbjct: 61  GGGGGSSSSAAVAAGASSSSSSSSVAAAARRGAGRAGGGAPSGGGGGPRCQVERCGVDLS 120

Query: 96  EAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQQCSRFHELTEFDEAKRSCRRRLAGHNER 155
           EA RY+RRHKVC+ HSK  VV+VAG+RQRFCQQCSRFHELTEFD+AKRSCRRRLAGHNER
Sbjct: 121 EAGRYNRRHKVCQTHSKEPVVLVAGLRQRFCQQCSRFHELTEFDDAKRSCRRRLAGHNER 180

[Close]

BLAST of Cp4.1LG06g06840 vs. ExPASy Swiss-Prot
Match: Q38741 (Squamosa promoter-binding protein 1 OS=Antirrhinum majus OX=4151 GN=SBP1 PE=2 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.3e-31
Identity = 79/153 (51.63%), Postives = 96/153 (62.75%), Query Frame = 0


Query: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60
           M+    EGK  +K        +    E   EE+D+G                E+ KK R 
Sbjct: 1   MDTSKGEGKRVIK--------LPGSQEQGEEEDDIG----------------EDSKKTRA 60

Query: 61  TAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120
              SG+  SGS  +  SCQ  NC  +++ AK YHRRHKVCEFH+KA VV+ +G++QRFCQ
Sbjct: 61  LTPSGKRASGS--TQRSCQVENCAAEMTNAKPYHRRHKVCEFHAKAPVVLHSGLQQRFCQ 120

Query: 121 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSS 154
           QCSRFHEL+EFDEAKRSCRRRLAGHNERRRKSS
Sbjct: 121 QCSRFHELSEFDEAKRSCRRRLAGHNERRRKSS 127

[Close]

BLAST of Cp4.1LG06g06840 vs. ExPASy Swiss-Prot
Match: P93015 (Squamosa promoter-binding-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=SPL3 PE=1 SV=2)

HSP 1 Score: 133.3 bits (334), Expect = 3.1e-30
Identity = 77/155 (49.68%), Postives = 99/155 (63.87%), Query Frame = 0


Query: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60
           M     EGK +L++ + +E     + E ETE+ED            T       EKK++G
Sbjct: 3   MRRSKAEGKRSLRELSEEE-----EEEEETEDED------------TFEEEEALEKKQKG 62

Query: 61  TAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120
            A S         SS  CQ  +CT D+S+AK+YH+RHKVC+FH+KA  V ++G+ QRFCQ
Sbjct: 63  KATS---------SSGVCQVESCTADMSKAKQYHKRHKVCQFHAKAPHVRISGLHQRFCQ 122

Query: 121 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAE 156
           QCSRFH L+EFDEAKRSCRRRLAGHNERRRKS+ +
Sbjct: 123 QCSRFHALSEFDEAKRSCRRRLAGHNERRRKSTTD 131

[Close]

BLAST of Cp4.1LG06g06840 vs. NCBI nr
Match: XP_023536105.1 (squamosa promoter-binding protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 402 bits (1032), Expect = 3.70e-141
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60
           MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG
Sbjct: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60

Query: 61  TAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120
           TAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ
Sbjct: 61  TAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120

Query: 121 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSVSQSKEGHCRQLME 180
           QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSVSQSKEGHCRQLME
Sbjct: 121 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSVSQSKEGHCRQLME 180

Query: 181 DQRSRIQMAPTGSSGYKHLHIR 202
           DQRSRIQMAPTGSSGYKHLHIR
Sbjct: 181 DQRSRIQMAPTGSSGYKHLHIR 202

[Close]

BLAST of Cp4.1LG06g06840 vs. NCBI nr
Match: XP_022937043.1 (squamosa promoter-binding protein 1-like [Cucurbita moschata])

HSP 1 Score: 399 bits (1025), Expect = 4.32e-140
Identity = 200/202 (99.01%), Postives = 201/202 (99.50%), Query Frame = 0


Query: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60
           MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG
Sbjct: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60

Query: 61  TAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120
           T+VSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ
Sbjct: 61  TSVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120

Query: 121 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSVSQSKEGHCRQLME 180
           QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGS SQSKEGHCRQLME
Sbjct: 121 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSASQSKEGHCRQLME 180

Query: 181 DQRSRIQMAPTGSSGYKHLHIR 202
           DQRSRIQMAPTGSSGYKHLHIR
Sbjct: 181 DQRSRIQMAPTGSSGYKHLHIR 202

[Close]

BLAST of Cp4.1LG06g06840 vs. NCBI nr
Match: KAG7024822.1 (Squamosa promoter-binding-like protein 5, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 396 bits (1017), Expect = 3.71e-138
Identity = 199/202 (98.51%), Postives = 200/202 (99.01%), Query Frame = 0


Query: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60
           MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG
Sbjct: 47  MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 106

Query: 61  TAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120
           TAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ
Sbjct: 107 TAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 166

Query: 121 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSVSQSKEGHCRQLME 180
           QCSRFHELTEFD+AKRSCRRRLAGHNERRRKSSAECQGESTNRKGS SQSKEGHCRQLME
Sbjct: 167 QCSRFHELTEFDDAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSASQSKEGHCRQLME 226

Query: 181 DQRSRIQMAPTGSSGYKHLHIR 202
           DQRSRIQMAPTGSSGYK LHIR
Sbjct: 227 DQRSRIQMAPTGSSGYKQLHIR 248

[Close]

BLAST of Cp4.1LG06g06840 vs. NCBI nr
Match: KAG6591949.1 (Squamosa promoter-binding-like protein 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 393 bits (1009), Expect = 1.19e-137
Identity = 198/202 (98.02%), Postives = 199/202 (98.51%), Query Frame = 0


Query: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60
           MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVG GGHGGTNACTALGYYENEKKKRG
Sbjct: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGRGGHGGTNACTALGYYENEKKKRG 60

Query: 61  TAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120
           TAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ
Sbjct: 61  TAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120

Query: 121 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSVSQSKEGHCRQLME 180
           QCSRFHELTEFD+AKRSCRRRLAGHNERRRKSSAECQGESTNRKGS SQSKEGHCRQLME
Sbjct: 121 QCSRFHELTEFDDAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSASQSKEGHCRQLME 180

Query: 181 DQRSRIQMAPTGSSGYKHLHIR 202
           DQRSRIQMAPTGSSGYK LHIR
Sbjct: 181 DQRSRIQMAPTGSSGYKQLHIR 202

[Close]

BLAST of Cp4.1LG06g06840 vs. NCBI nr
Match: XP_022976580.1 (squamosa promoter-binding protein 1-like [Cucurbita maxima])

HSP 1 Score: 389 bits (999), Expect = 3.98e-136
Identity = 194/202 (96.04%), Postives = 198/202 (98.02%), Query Frame = 0


Query: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60
           MEAKSYEGKHNLKDKAY+EGV+DDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG
Sbjct: 1   MEAKSYEGKHNLKDKAYREGVVDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60

Query: 61  TAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120
           TAVSGRGRSG GVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ
Sbjct: 61  TAVSGRGRSGVGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120

Query: 121 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSVSQSKEGHCRQLME 180
           QCSRFHELTEFDEAKRSCRRRLAGHNERRRK+SAECQGESTNRKG  SQSKEG CRQLME
Sbjct: 121 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKNSAECQGESTNRKGPASQSKEGQCRQLME 180

Query: 181 DQRSRIQMAPTGSSGYKHLHIR 202
           DQR+RIQMAPTGSSGYKHLHIR
Sbjct: 181 DQRTRIQMAPTGSSGYKHLHIR 202

[Close]

BLAST of Cp4.1LG06g06840 vs. ExPASy TrEMBL
Match: A0A6J1FEY0 (squamosa promoter-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111443461 PE=4 SV=1)

HSP 1 Score: 399 bits (1025), Expect = 2.09e-140
Identity = 200/202 (99.01%), Postives = 201/202 (99.50%), Query Frame = 0


Query: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60
           MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG
Sbjct: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60

Query: 61  TAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120
           T+VSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ
Sbjct: 61  TSVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120

Query: 121 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSVSQSKEGHCRQLME 180
           QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGS SQSKEGHCRQLME
Sbjct: 121 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSASQSKEGHCRQLME 180

Query: 181 DQRSRIQMAPTGSSGYKHLHIR 202
           DQRSRIQMAPTGSSGYKHLHIR
Sbjct: 181 DQRSRIQMAPTGSSGYKHLHIR 202

[Close]

BLAST of Cp4.1LG06g06840 vs. ExPASy TrEMBL
Match: A0A6J1IJV6 (squamosa promoter-binding protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111476934 PE=4 SV=1)

HSP 1 Score: 389 bits (999), Expect = 1.93e-136
Identity = 194/202 (96.04%), Postives = 198/202 (98.02%), Query Frame = 0


Query: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60
           MEAKSYEGKHNLKDKAY+EGV+DDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG
Sbjct: 1   MEAKSYEGKHNLKDKAYREGVVDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60

Query: 61  TAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120
           TAVSGRGRSG GVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ
Sbjct: 61  TAVSGRGRSGVGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120

Query: 121 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSVSQSKEGHCRQLME 180
           QCSRFHELTEFDEAKRSCRRRLAGHNERRRK+SAECQGESTNRKG  SQSKEG CRQLME
Sbjct: 121 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKNSAECQGESTNRKGPASQSKEGQCRQLME 180

Query: 181 DQRSRIQMAPTGSSGYKHLHIR 202
           DQR+RIQMAPTGSSGYKHLHIR
Sbjct: 181 DQRTRIQMAPTGSSGYKHLHIR 202

[Close]

BLAST of Cp4.1LG06g06840 vs. ExPASy TrEMBL
Match: A0A0A0L3D9 (Squamosa promoter-binding protein OS=Cucumis sativus OX=3659 GN=Csa_4G631590 PE=4 SV=1)

HSP 1 Score: 330 bits (847), Expect = 2.84e-113
Identity = 171/206 (83.01%), Postives = 183/206 (88.83%), Query Frame = 0


Query: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTN--ACTALGYYENEKKK 60
           M+AKS+EGKHN KDK     V+DDD EYETEEE+VGGGG GG+N  AC ALGY++NEKKK
Sbjct: 1   MDAKSFEGKHNFKDKT----VVDDDFEYETEEEEVGGGGGGGSNSNACNALGYFDNEKKK 60

Query: 61  RGTAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRF 120
           RG AVSGRG+SG  VS PSCQAHNC  DLSEAKRYHRRHKVCEFHSKAA+VMVAGIRQRF
Sbjct: 61  RGAAVSGRGKSGGSVSLPSCQAHNCAADLSEAKRYHRRHKVCEFHSKAAIVMVAGIRQRF 120

Query: 121 CQQCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSV--SQSKEGHCR 180
           CQQCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAE QGEST+RKGS   +QSKE HCR
Sbjct: 121 CQQCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAESQGESTSRKGSAPQAQSKESHCR 180

Query: 181 QLMEDQRSRIQMAPTGSSGYKHLHIR 202
           QL+EDQRSRIQMAP GSSGYKHLHIR
Sbjct: 181 QLVEDQRSRIQMAPPGSSGYKHLHIR 202

[Close]

BLAST of Cp4.1LG06g06840 vs. ExPASy TrEMBL
Match: A0A5D3DWS3 (Squamosa promoter-binding protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001760 PE=4 SV=1)

HSP 1 Score: 324 bits (830), Expect = 1.03e-110
Identity = 167/204 (81.86%), Postives = 182/204 (89.22%), Query Frame = 0


Query: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGG-TNACTALGYYENEKKKR 60
           M+AKS+EGKHN KDK     V+DDD EYETEEE+VGGGG G  +NAC ALGY++NEK+KR
Sbjct: 1   MDAKSFEGKHNSKDKT----VVDDDFEYETEEEEVGGGGGGSNSNACNALGYFDNEKRKR 60

Query: 61  GTAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFC 120
           G AVSGRG+SG  VSSPSCQAHNC  DLSEAKRYHRRHKVCEFHSKAA+VMVAGIRQRFC
Sbjct: 61  GAAVSGRGKSGGSVSSPSCQAHNCAADLSEAKRYHRRHKVCEFHSKAAIVMVAGIRQRFC 120

Query: 121 QQCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSV-SQSKEGHCRQL 180
           QQCSRFHELTEFDEAKRSCRRRLAGHNERRRK+SAE QGEST+RK +  +QSKE HCRQL
Sbjct: 121 QQCSRFHELTEFDEAKRSCRRRLAGHNERRRKNSAESQGESTSRKSAPQAQSKESHCRQL 180

Query: 181 MEDQRSRIQMAPTGSSGYKHLHIR 202
           +EDQRSRIQMAP GSSGYKHLHIR
Sbjct: 181 VEDQRSRIQMAPPGSSGYKHLHIR 200

[Close]

BLAST of Cp4.1LG06g06840 vs. ExPASy TrEMBL
Match: A0A1S4E4C7 (squamosa promoter-binding protein 1-like OS=Cucumis melo OX=3656 GN=LOC103501851 PE=4 SV=1)

HSP 1 Score: 291 bits (745), Expect = 5.23e-98
Identity = 155/203 (76.35%), Postives = 169/203 (83.25%), Query Frame = 0


Query: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60
           M+AKS+EGKHN KDK     V+DDD EYETEEE+VGGGG                +K++G
Sbjct: 1   MDAKSFEGKHNSKDKT----VVDDDFEYETEEEEVGGGGG---------------EKEKG 60

Query: 61  TAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120
            AVSGRG+SG  VSSPSCQAHNC  DLSEAKRYHRRHKVCEFHSKAA+VMVAGIRQRFCQ
Sbjct: 61  AAVSGRGKSGGSVSSPSCQAHNCAADLSEAKRYHRRHKVCEFHSKAAIVMVAGIRQRFCQ 120

Query: 121 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSV-SQSKEGHCRQLM 180
           QCSRFHELTEFDEAKRSCRRRLAGHNERRRK+SAE QGEST+RK +  +QSKE HCRQL+
Sbjct: 121 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKNSAESQGESTSRKSAPQAQSKESHCRQLV 180

Query: 181 EDQRSRIQMAPTGSSGYKHLHIR 202
           EDQRSRIQMAP GSSGYKHLHIR
Sbjct: 181 EDQRSRIQMAPPGSSGYKHLHIR 184

[Close]

BLAST of Cp4.1LG06g06840 vs. TAIR 10
Match: AT1G53160.2 (squamosa promoter binding protein-like 4 )

HSP 1 Score: 147.1 bits (370), Expect = 1.5e-35
Identity = 92/203 (45.32%), Postives = 119/203 (58.62%), Query Frame = 0


Query: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60
           ME K  +G+  +K K+Y   ++++D+E +T+EE+  G                     R 
Sbjct: 1   MEGKRSQGQGYMKKKSY---LVEEDMETDTDEEEEVG---------------------RD 60

Query: 61  TAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120
                RG    G S   CQ   CT D+ EAK YHRRHKVCE H+KA+ V ++G+ QRFCQ
Sbjct: 61  RVRGSRGSINRGGSLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQ 120

Query: 121 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSVSQSKEGHCRQLME 180
           QCSRFH+L EFDEAKRSCRRRLAGHNERRRKSS    GEST  +GS  +   G    +  
Sbjct: 121 QCSRFHDLQEFDEAKRSCRRRLAGHNERRRKSS----GESTYGEGSGRRGINGQV-VMQN 174

Query: 181 DQRSRIQMA-PTGSSGYKHLHIR 203
            +RSR++M  P  +S +K   IR
Sbjct: 181 QERSRVEMTLPMPNSSFKRPQIR 174

[Close]

BLAST of Cp4.1LG06g06840 vs. TAIR 10
Match: AT1G53160.1 (squamosa promoter binding protein-like 4 )

HSP 1 Score: 147.1 bits (370), Expect = 1.5e-35
Identity = 92/203 (45.32%), Postives = 119/203 (58.62%), Query Frame = 0


Query: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60
           ME K  +G+  +K K+Y   ++++D+E +T+EE+  G                     R 
Sbjct: 1   MEGKRSQGQGYMKKKSY---LVEEDMETDTDEEEEVG---------------------RD 60

Query: 61  TAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120
                RG    G S   CQ   CT D+ EAK YHRRHKVCE H+KA+ V ++G+ QRFCQ
Sbjct: 61  RVRGSRGSINRGGSLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQ 120

Query: 121 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSVSQSKEGHCRQLME 180
           QCSRFH+L EFDEAKRSCRRRLAGHNERRRKSS    GEST  +GS  +   G    +  
Sbjct: 121 QCSRFHDLQEFDEAKRSCRRRLAGHNERRRKSS----GESTYGEGSGRRGINGQV-VMQN 174

Query: 181 DQRSRIQMA-PTGSSGYKHLHIR 203
            +RSR++M  P  +S +K   IR
Sbjct: 181 QERSRVEMTLPMPNSSFKRPQIR 174

[Close]

BLAST of Cp4.1LG06g06840 vs. TAIR 10
Match: AT3G15270.1 (squamosa promoter binding protein-like 5 )

HSP 1 Score: 146.0 bits (367), Expect = 3.3e-35
Identity = 88/203 (43.35%), Postives = 120/203 (59.11%), Query Frame = 0


Query: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60
           ME +  + +  LKDKA    ++++++E   + E+  GG               +E K++ 
Sbjct: 1   MEGQRTQRRGYLKDKATVSNLVEEEMENGMDGEEEDGG---------------DEDKRKK 60

Query: 61  TAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120
                RG S   V S  CQ   CT +L+EAK+Y+RRH+VCE H+KA+   VAG+RQRFCQ
Sbjct: 61  VMERVRGPSTDRVPSRLCQVDRCTVNLTEAKQYYRRHRVCEVHAKASAATVAGVRQRFCQ 120

Query: 121 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSVSQSKEGHCRQLME 180
           QCSRFHEL EFDEAKRSCRRRLAGHNERRRK S +  GE + R+G   Q        +  
Sbjct: 121 QCSRFHELPEFDEAKRSCRRRLAGHNERRRKISGDSFGEGSGRRGFSGQ-------LIQT 180

Query: 181 DQRSRI-QMAPTGSSGYKHLHIR 203
            +R+R+ +  P  +S +K   IR
Sbjct: 181 QERNRVDRKLPMTNSSFKRPQIR 181

[Close]

BLAST of Cp4.1LG06g06840 vs. TAIR 10
Match: AT2G33810.1 (squamosa promoter binding protein-like 3 )

HSP 1 Score: 133.3 bits (334), Expect = 2.2e-31
Identity = 77/155 (49.68%), Postives = 99/155 (63.87%), Query Frame = 0


Query: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60
           M     EGK +L++ + +E     + E ETE+ED            T       EKK++G
Sbjct: 3   MRRSKAEGKRSLRELSEEE-----EEEEETEDED------------TFEEEEALEKKQKG 62

Query: 61  TAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120
            A S         SS  CQ  +CT D+S+AK+YH+RHKVC+FH+KA  V ++G+ QRFCQ
Sbjct: 63  KATS---------SSGVCQVESCTADMSKAKQYHKRHKVCQFHAKAPHVRISGLHQRFCQ 122

Query: 121 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAE 156
           QCSRFH L+EFDEAKRSCRRRLAGHNERRRKS+ +
Sbjct: 123 QCSRFHALSEFDEAKRSCRRRLAGHNERRRKSTTD 131

[Close]

BLAST of Cp4.1LG06g06840 vs. TAIR 10
Match: AT1G69170.1 (Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein )

HSP 1 Score: 122.9 bits (307), Expect = 3.0e-28
Identity = 61/105 (58.10%), Postives = 77/105 (73.33%), Query Frame = 0


Query: 49  LGYYENEKKKRGTAVSGRGRSGSGVSS--PSCQAHNCTTDLSEAKRYHRRHKVCEFHSKA 108
           LG  +++   RG A+  +    S + S  P CQ + C+ DLS +K YH+RH+VCE HSK 
Sbjct: 93  LGNDDDDTSSRGFALPSKKSRASNLCSQNPLCQVYGCSKDLSSSKDYHKRHRVCEAHSKT 152

Query: 109 AVVMVAGIRQRFCQQCSRFHELTEFDEAKRSCRRRLAGHNERRRK 152
           +VV+V G+ QRFCQQCSRFH L+EFD+ KRSCRRRLAGHNERRRK
Sbjct: 153 SVVIVNGLEQRFCQQCSRFHFLSEFDDGKRSCRRRLAGHNERRRK 197

The following BLAST results are available for this feature:

BLAST of Cp4.1LG06g06840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7A9	2.1e-34	45.32	Squamosa promoter-binding-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=SPL4...	[more]
Q9S758	4.7e-34	43.35	Squamosa promoter-binding-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=SPL5...	[more]
Q6Z461	2.3e-33	59.06	Squamosa promoter-binding-like protein 13 OS=Oryza sativa subsp. japonica OX=399...	[more]
Q38741	1.3e-31	51.63	Squamosa promoter-binding protein 1 OS=Antirrhinum majus OX=4151 GN=SBP1 PE=2 SV...	[more]
P93015	3.1e-30	49.68	Squamosa promoter-binding-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=SPL3...	[more]

BLAST of Cp4.1LG06g06840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023536105.1	3.70e-141	100.00	squamosa promoter-binding protein 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022937043.1	4.32e-140	99.01	squamosa promoter-binding protein 1-like [Cucurbita moschata]	[more]
KAG7024822.1	3.71e-138	98.51	Squamosa promoter-binding-like protein 5, partial [Cucurbita argyrosperma subsp....	[more]
KAG6591949.1	1.19e-137	98.02	Squamosa promoter-binding-like protein 5, partial [Cucurbita argyrosperma subsp....	[more]
XP_022976580.1	3.98e-136	96.04	squamosa promoter-binding protein 1-like [Cucurbita maxima]	[more]

BLAST of Cp4.1LG06g06840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FEY0	2.09e-140	99.01	squamosa promoter-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1IJV6	1.93e-136	96.04	squamosa promoter-binding protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]
A0A0A0L3D9	2.84e-113	83.01	Squamosa promoter-binding protein OS=Cucumis sativus OX=3659 GN=Csa_4G631590 PE=...	[more]
A0A5D3DWS3	1.03e-110	81.86	Squamosa promoter-binding protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S4E4C7	5.23e-98	76.35	squamosa promoter-binding protein 1-like OS=Cucumis melo OX=3656 GN=LOC103501851...	[more]

BLAST of Cp4.1LG06g06840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G53160.2	1.5e-35	45.32	squamosa promoter binding protein-like 4	[more]
AT1G53160.1	1.5e-35	45.32	squamosa promoter binding protein-like 4	[more]
AT3G15270.1	3.3e-35	43.35	squamosa promoter binding protein-like 5	[more]
AT2G33810.1	2.2e-31	49.68	squamosa promoter binding protein-like 3	[more]
AT1G69170.1	3.0e-28	58.10	Squamosa promoter-binding protein-like (SBP domain) transcription factor family ...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036893	SBP domain superfamily	GENE3D	4.10.1100.10		coord: 68..139 e-value: 1.5E-32 score: 113.5
IPR036893	SBP domain superfamily	SUPERFAMILY	103612	SBT domain	coord: 76..155
IPR004333	SBP domain	PFAM	PF03110	SBP	coord: 78..151 e-value: 1.6E-31 score: 108.4
IPR004333	SBP domain	PROSITE	PS51141	ZF_SBP	coord: 75..152 score: 32.273895
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 143..202
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 158..173
None	No IPR available	PANTHER	PTHR31251:SF149	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN	coord: 11..202
IPR044817	Squamosa promoter-binding-like protein	PANTHER	PTHR31251	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4	coord: 11..202

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG06g06840.1	Cp4.1LG06g06840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding