Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCTCTCCAATTCCATGTTTCAATTTCTCGTCCTCTTCGCTCTCTTTTCTCTCGTGAAACCAGACGCCGCCTTGATCGGAAGCGTCTGCGGCAAGACTGAACAGCCGGTCATTTGTTCCGATTGCTTCAAATCCTCCTCCGGAAGCCAGACCGCCGACGTCCGTGGGCTCGCAGTCATCGCCATTGGATGTGCCGAGAGAAATACCAGATTAATGGCGCAGAAACTCGGCGAACTTCTCCGTAGCACGCCGGATTCCGCTTTGAAGACGATTTTGAACGGTTGCTGGTTATCGACGGGGTATACTGCCGGCGATTTTCCGGGAATCGAAAGGGCTGTCGCGGCCGGAGACTACACCACCGGCAGAAACACTTTGGAGATTGCGATTAGGAATGTGAATAGCTGCTTGGAAGAGTTCAATAAAAACCCTCGCGTTCCGGTGCCGTCGGAGGTTTTGACGGGGACGGTGGCGGCCATCCAAGGCCGCCGGATTGTTTCTGATATTTTGAATAGTATTTAA
mRNA sequence
ATGAATCTCTCCAATTCCATGTTTCAATTTCTCGTCCTCTTCGCTCTCTTTTCTCTCGTGAAACCAGACGCCGCCTTGATCGGAAGCGTCTGCGGCAAGACTGAACAGCCGGTCATTTGTTCCGATTGCTTCAAATCCTCCTCCGGAAGCCAGACCGCCGACGTCCGTGGGCTCGCAGTCATCGCCATTGGATGTGCCGAGAGAAATACCAGATTAATGGCGCAGAAACTCGGCGAACTTCTCCGTAGCACGCCGGATTCCGCTTTGAAGACGATTTTGAACGGTTGCTGGTTATCGACGGGGTATACTGCCGGCGATTTTCCGGGAATCGAAAGGGCTGTCGCGGCCGGAGACTACACCACCGGCAGAAACACTTTGGAGATTGCGATTAGGAATGTGAATAGCTGCTTGGAAGAGTTCAATAAAAACCCTCGCGTTCCGGTGCCGTCGGAGGTTTTGACGGGGACGGTGGCGGCCATCCAAGGCCGCCGGATTGTTTCTGATATTTTGAATAGTATTTAA
Coding sequence (CDS)
ATGAATCTCTCCAATTCCATGTTTCAATTTCTCGTCCTCTTCGCTCTCTTTTCTCTCGTGAAACCAGACGCCGCCTTGATCGGAAGCGTCTGCGGCAAGACTGAACAGCCGGTCATTTGTTCCGATTGCTTCAAATCCTCCTCCGGAAGCCAGACCGCCGACGTCCGTGGGCTCGCAGTCATCGCCATTGGATGTGCCGAGAGAAATACCAGATTAATGGCGCAGAAACTCGGCGAACTTCTCCGTAGCACGCCGGATTCCGCTTTGAAGACGATTTTGAACGGTTGCTGGTTATCGACGGGGTATACTGCCGGCGATTTTCCGGGAATCGAAAGGGCTGTCGCGGCCGGAGACTACACCACCGGCAGAAACACTTTGGAGATTGCGATTAGGAATGTGAATAGCTGCTTGGAAGAGTTCAATAAAAACCCTCGCGTTCCGGTGCCGTCGGAGGTTTTGACGGGGACGGTGGCGGCCATCCAAGGCCGCCGGATTGTTTCTGATATTTTGAATAGTATTTAA
Protein sequence
MNLSNSMFQFLVLFALFSLVKPDAALIGSVCGKTEQPVICSDCFKSSSGSQTADVRGLAVIAIGCAERNTRLMAQKLGELLRSTPDSALKTILNGCWLSTGYTAGDFPGIERAVAAGDYTTGRNTLEIAIRNVNSCLEEFNKNPRVPVPSEVLTGTVAAIQGRRIVSDILNSI
Homology
BLAST of Cp4.1LG06g06580 vs. NCBI nr
Match:
XP_023536163.1 (uncharacterized protein LOC111797408 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 339 bits (869), Expect = 2.91e-117
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0
Query: 1 MNLSNSMFQFLVLFALFSLVKPDAALIGSVCGKTEQPVICSDCFKSSSGSQTADVRGLAV 60
MNLSNSMFQFLVLFALFSLVKPDAALIGSVCGKTEQPVICSDCFKSSSGSQTADVRGLAV
Sbjct: 1 MNLSNSMFQFLVLFALFSLVKPDAALIGSVCGKTEQPVICSDCFKSSSGSQTADVRGLAV 60
Query: 61 IAIGCAERNTRLMAQKLGELLRSTPDSALKTILNGCWLSTGYTAGDFPGIERAVAAGDYT 120
IAIGCAERNTRLMAQKLGELLRSTPDSALKTILNGCWLSTGYTAGDFPGIERAVAAGDYT
Sbjct: 61 IAIGCAERNTRLMAQKLGELLRSTPDSALKTILNGCWLSTGYTAGDFPGIERAVAAGDYT 120
Query: 121 TGRNTLEIAIRNVNSCLEEFNKNPRVPVPSEVLTGTVAAIQGRRIVSDILNSI 173
TGRNTLEIAIRNVNSCLEEFNKNPRVPVPSEVLTGTVAAIQGRRIVSDILNSI
Sbjct: 121 TGRNTLEIAIRNVNSCLEEFNKNPRVPVPSEVLTGTVAAIQGRRIVSDILNSI 173
BLAST of Cp4.1LG06g06580 vs. NCBI nr
Match:
KAG6591933.1 (Pectinesterase inhibitor, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 303 bits (775), Expect = 5.44e-103
Identity = 158/169 (93.49%), Postives = 160/169 (94.67%), Query Frame = 0
Query: 7 MFQFLVLFALFSLVKPDAALIGSVCGKTEQPVICSDCFKSSSGSQTADVRGLAVIAIGCA 66
M QFLVLF LFS VKPDAALIGSVCGKTEQPVICSDCF+SSSGSQTADVRGLAVIAIGCA
Sbjct: 1 MLQFLVLFPLFSHVKPDAALIGSVCGKTEQPVICSDCFESSSGSQTADVRGLAVIAIGCA 60
Query: 67 ERNTRLMAQKLGELLRSTPDSALKTILNGCWLSTGYTAGDFPGIERAVAAGDYTTGRNTL 126
ERNTRLMAQKLGELLRSTPDSALKTILNGCW+STGY AGDFPGI RAVAAGDYTTGRNTL
Sbjct: 61 ERNTRLMAQKLGELLRSTPDSALKTILNGCWISTGYAAGDFPGIARAVAAGDYTTGRNTL 120
Query: 127 EIAIRNVNSCLEEFNKNPRVPVPSEVLTGTV--AAIQGRRIVSDILNSI 173
EIAIRNVNSCLEEFNKNPRVPVPSEVLT TV AAIQG RIVSDILNSI
Sbjct: 121 EIAIRNVNSCLEEFNKNPRVPVPSEVLTVTVTVAAIQGCRIVSDILNSI 169
BLAST of Cp4.1LG06g06580 vs. NCBI nr
Match:
XP_038896712.1 (pectinesterase inhibitor-like [Benincasa hispida])
HSP 1 Score: 248 bits (632), Expect = 3.82e-81
Identity = 125/173 (72.25%), Postives = 142/173 (82.08%), Query Frame = 0
Query: 1 MNLSNSMFQFLVLFALFSLVKPDAALIGSVCGKTEQPVICSDCFKSSSGSQTADVRGLAV 60
MNL +S+ +VLFALFS KPDAALI ++C KTEQP ICSDC S SGSQTAD GLA+
Sbjct: 1 MNLLSSILPIIVLFALFSPAKPDAALIANLCCKTEQPKICSDCLNSGSGSQTADGLGLAL 60
Query: 61 IAIGCAERNTRLMAQKLGELLRSTPDSALKTILNGCWLSTGYTAGDFPGIERAVAAGDYT 120
IAIGCAE+NT+LMAQ+LG L+RSTPDS LKT+LN CWLSTG AG+FPGI R+VAAGDY
Sbjct: 61 IAIGCAEKNTKLMAQRLGGLVRSTPDSTLKTLLNDCWLSTGSAAGNFPGIARSVAAGDYA 120
Query: 121 TGRNTLEIAIRNVNSCLEEFNKNPRVPVPSEVLTGTVAAIQGRRIVSDILNSI 173
GRN LEI IRN NSCL+ FNKNP VPVPSEVL GTVAA Q RI+S+ILN+I
Sbjct: 121 GGRNVLEITIRNANSCLDNFNKNPSVPVPSEVLAGTVAAAQDCRIISEILNNI 173
BLAST of Cp4.1LG06g06580 vs. NCBI nr
Match:
XP_008463801.1 (PREDICTED: pectinesterase inhibitor-like [Cucumis melo] >KAA0066803.1 pectinesterase inhibitor-like [Cucumis melo var. makuwa] >TYK27950.1 pectinesterase inhibitor-like [Cucumis melo var. makuwa])
HSP 1 Score: 236 bits (603), Expect = 9.94e-77
Identity = 116/173 (67.05%), Postives = 137/173 (79.19%), Query Frame = 0
Query: 1 MNLSNSMFQFLVLFALFSLVKPDAALIGSVCGKTEQPVICSDCFKSSSGSQTADVRGLAV 60
MNL NS+ +LFALFS KPDAA IG++C KTEQP ICSDC S GSQ+A RGLA+
Sbjct: 1 MNLLNSILLISLLFALFSPAKPDAAYIGNLCSKTEQPKICSDCLNSGRGSQSASGRGLAL 60
Query: 61 IAIGCAERNTRLMAQKLGELLRSTPDSALKTILNGCWLSTGYTAGDFPGIERAVAAGDYT 120
IA+GCAERNT+LMAQ++G L+RSTP+S LK +LN CW+STGY AG+FPGI R+VAAGDY
Sbjct: 61 IAVGCAERNTKLMAQRVGNLVRSTPESTLKMLLNECWMSTGYAAGNFPGIARSVAAGDYA 120
Query: 121 TGRNTLEIAIRNVNSCLEEFNKNPRVPVPSEVLTGTVAAIQGRRIVSDILNSI 173
+G+N LEI IRNVN CL F KNP +PVPSEVL GTVA Q RIV+ ILN+I
Sbjct: 121 SGKNVLEITIRNVNMCLVNFKKNPNIPVPSEVLAGTVAVTQDCRIVTQILNNI 173
BLAST of Cp4.1LG06g06580 vs. NCBI nr
Match:
XP_011654411.1 (pectinesterase inhibitor [Cucumis sativus] >KGN55098.1 hypothetical protein Csa_012087 [Cucumis sativus])
HSP 1 Score: 226 bits (576), Expect = 1.28e-72
Identity = 113/173 (65.32%), Postives = 135/173 (78.03%), Query Frame = 0
Query: 1 MNLSNSMFQFLVLFALFSLVKPDAALIGSVCGKTEQPVICSDCFKSSSGSQTADVRGLAV 60
MNL NS +LFALFS KPDAA I ++CGKTEQP ICSDC S GSQ+A RGLA+
Sbjct: 1 MNLLNSTLLISLLFALFSPAKPDAAYIQNLCGKTEQPKICSDCLNSGQGSQSAIGRGLAL 60
Query: 61 IAIGCAERNTRLMAQKLGELLRSTPDSALKTILNGCWLSTGYTAGDFPGIERAVAAGDYT 120
IA+ CAERNT+LMAQ++G L+RSTP+S LKT+LN CW+STGY AG+FPGI R+VAAGDY
Sbjct: 61 IAVECAERNTKLMAQRVGNLVRSTPESTLKTLLNECWMSTGYAAGNFPGIARSVAAGDYG 120
Query: 121 TGRNTLEIAIRNVNSCLEEFNKNPRVPVPSEVLTGTVAAIQGRRIVSDILNSI 173
G++ LEI IRNVN C++ F KNP + VPSEVL GTVA Q RIV+ ILN+I
Sbjct: 121 GGKSVLEITIRNVNMCMDNFKKNPSILVPSEVLAGTVAVTQDCRIVTQILNNI 173
BLAST of Cp4.1LG06g06580 vs. ExPASy TrEMBL
Match:
A0A5D3DXI0 (Pectinesterase inhibitor-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001540 PE=4 SV=1)
HSP 1 Score: 236 bits (603), Expect = 4.81e-77
Identity = 116/173 (67.05%), Postives = 137/173 (79.19%), Query Frame = 0
Query: 1 MNLSNSMFQFLVLFALFSLVKPDAALIGSVCGKTEQPVICSDCFKSSSGSQTADVRGLAV 60
MNL NS+ +LFALFS KPDAA IG++C KTEQP ICSDC S GSQ+A RGLA+
Sbjct: 1 MNLLNSILLISLLFALFSPAKPDAAYIGNLCSKTEQPKICSDCLNSGRGSQSASGRGLAL 60
Query: 61 IAIGCAERNTRLMAQKLGELLRSTPDSALKTILNGCWLSTGYTAGDFPGIERAVAAGDYT 120
IA+GCAERNT+LMAQ++G L+RSTP+S LK +LN CW+STGY AG+FPGI R+VAAGDY
Sbjct: 61 IAVGCAERNTKLMAQRVGNLVRSTPESTLKMLLNECWMSTGYAAGNFPGIARSVAAGDYA 120
Query: 121 TGRNTLEIAIRNVNSCLEEFNKNPRVPVPSEVLTGTVAAIQGRRIVSDILNSI 173
+G+N LEI IRNVN CL F KNP +PVPSEVL GTVA Q RIV+ ILN+I
Sbjct: 121 SGKNVLEITIRNVNMCLVNFKKNPNIPVPSEVLAGTVAVTQDCRIVTQILNNI 173
BLAST of Cp4.1LG06g06580 vs. ExPASy TrEMBL
Match:
A0A1S3CK48 (pectinesterase inhibitor-like OS=Cucumis melo OX=3656 GN=LOC103501854 PE=4 SV=1)
HSP 1 Score: 236 bits (603), Expect = 4.81e-77
Identity = 116/173 (67.05%), Postives = 137/173 (79.19%), Query Frame = 0
Query: 1 MNLSNSMFQFLVLFALFSLVKPDAALIGSVCGKTEQPVICSDCFKSSSGSQTADVRGLAV 60
MNL NS+ +LFALFS KPDAA IG++C KTEQP ICSDC S GSQ+A RGLA+
Sbjct: 1 MNLLNSILLISLLFALFSPAKPDAAYIGNLCSKTEQPKICSDCLNSGRGSQSASGRGLAL 60
Query: 61 IAIGCAERNTRLMAQKLGELLRSTPDSALKTILNGCWLSTGYTAGDFPGIERAVAAGDYT 120
IA+GCAERNT+LMAQ++G L+RSTP+S LK +LN CW+STGY AG+FPGI R+VAAGDY
Sbjct: 61 IAVGCAERNTKLMAQRVGNLVRSTPESTLKMLLNECWMSTGYAAGNFPGIARSVAAGDYA 120
Query: 121 TGRNTLEIAIRNVNSCLEEFNKNPRVPVPSEVLTGTVAAIQGRRIVSDILNSI 173
+G+N LEI IRNVN CL F KNP +PVPSEVL GTVA Q RIV+ ILN+I
Sbjct: 121 SGKNVLEITIRNVNMCLVNFKKNPNIPVPSEVLAGTVAVTQDCRIVTQILNNI 173
BLAST of Cp4.1LG06g06580 vs. ExPASy TrEMBL
Match:
A0A0A0L044 (PMEI domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G628950 PE=4 SV=1)
HSP 1 Score: 226 bits (576), Expect = 6.19e-73
Identity = 113/173 (65.32%), Postives = 135/173 (78.03%), Query Frame = 0
Query: 1 MNLSNSMFQFLVLFALFSLVKPDAALIGSVCGKTEQPVICSDCFKSSSGSQTADVRGLAV 60
MNL NS +LFALFS KPDAA I ++CGKTEQP ICSDC S GSQ+A RGLA+
Sbjct: 1 MNLLNSTLLISLLFALFSPAKPDAAYIQNLCGKTEQPKICSDCLNSGQGSQSAIGRGLAL 60
Query: 61 IAIGCAERNTRLMAQKLGELLRSTPDSALKTILNGCWLSTGYTAGDFPGIERAVAAGDYT 120
IA+ CAERNT+LMAQ++G L+RSTP+S LKT+LN CW+STGY AG+FPGI R+VAAGDY
Sbjct: 61 IAVECAERNTKLMAQRVGNLVRSTPESTLKTLLNECWMSTGYAAGNFPGIARSVAAGDYG 120
Query: 121 TGRNTLEIAIRNVNSCLEEFNKNPRVPVPSEVLTGTVAAIQGRRIVSDILNSI 173
G++ LEI IRNVN C++ F KNP + VPSEVL GTVA Q RIV+ ILN+I
Sbjct: 121 GGKSVLEITIRNVNMCMDNFKKNPSILVPSEVLAGTVAVTQDCRIVTQILNNI 173
BLAST of Cp4.1LG06g06580 vs. ExPASy TrEMBL
Match:
A0A6J1FJC0 (uncharacterized protein LOC111446254 OS=Cucurbita moschata OX=3662 GN=LOC111446254 PE=4 SV=1)
HSP 1 Score: 226 bits (575), Expect = 9.39e-73
Identity = 116/175 (66.29%), Postives = 135/175 (77.14%), Query Frame = 0
Query: 1 MNLSNSMFQF--LVLFALFSLVKPDAALIGSVCGKTEQPVICSDCFKSSSGSQTADVRGL 60
MN NSM L LFALFS KPDAALI ++CG+TEQPVICS C S S S+TA+ RGL
Sbjct: 1 MNPFNSMLPLFLLALFALFSPAKPDAALIRNLCGRTEQPVICSACLNSDSASRTANGRGL 60
Query: 61 AVIAIGCAERNTRLMAQKLGELLRSTPDSALKTILNGCWLSTGYTAGDFPGIERAVAAGD 120
AVIA+GCAERNTR MAQ++G++ R TP+S +KT+LN CW STGY AG+FPGI AV GD
Sbjct: 61 AVIAVGCAERNTRAMAQRIGDISRRTPNSPVKTLLNDCWFSTGYAAGNFPGIRSAVQGGD 120
Query: 121 YTTGRNTLEIAIRNVNSCLEEFNKNPRVPVPSEVLTGTVAAIQGRRIVSDILNSI 173
Y RN +EI+IRNVNSCL F+KNP VPVPSEVL GTVAA+Q RIV ILN+I
Sbjct: 121 YARARNGVEISIRNVNSCLAGFDKNPSVPVPSEVLAGTVAAVQSCRIVLGILNNI 175
BLAST of Cp4.1LG06g06580 vs. ExPASy TrEMBL
Match:
A0A6J1J2U5 (uncharacterized protein LOC111480766 OS=Cucurbita maxima OX=3661 GN=LOC111480766 PE=4 SV=1)
HSP 1 Score: 221 bits (564), Expect = 4.43e-71
Identity = 114/175 (65.14%), Postives = 134/175 (76.57%), Query Frame = 0
Query: 1 MNLSNSMFQFLVL--FALFSLVKPDAALIGSVCGKTEQPVICSDCFKSSSGSQTADVRGL 60
MN NSM +L FA FS KPDAALI ++CG+TEQPVICS C S S S+TA+ RGL
Sbjct: 1 MNPFNSMLPLFLLSVFAPFSPAKPDAALIRNLCGRTEQPVICSACLNSDSASRTANGRGL 60
Query: 61 AVIAIGCAERNTRLMAQKLGELLRSTPDSALKTILNGCWLSTGYTAGDFPGIERAVAAGD 120
AVIA+GCAERNTR MAQ++G++ R TP+S +KT+LN CW STGY AG+FPGI AV GD
Sbjct: 61 AVIAVGCAERNTRAMAQRIGDISRRTPNSPVKTLLNDCWFSTGYAAGNFPGIRSAVEEGD 120
Query: 121 YTTGRNTLEIAIRNVNSCLEEFNKNPRVPVPSEVLTGTVAAIQGRRIVSDILNSI 173
Y RN +EI+IRNVNSCL F+KNP VPVPSEVL GTVAA+Q RIV ILN+I
Sbjct: 121 YARARNGVEISIRNVNSCLAGFDKNPSVPVPSEVLAGTVAAVQSCRIVLGILNNI 175
BLAST of Cp4.1LG06g06580 vs. TAIR 10
Match:
AT3G17220.1 (pectin methylesterase inhibitor 2 )
HSP 1 Score: 42.0 bits (97), Expect = 5.8e-04
Identity = 26/129 (20.16%), Postives = 57/129 (44.19%), Query Frame = 0
Query: 11 LVLFALFSLVKPDAALIGSVCGKTEQPVICSDCFKSSSGSQTADVRGLAVIAIGCAERNT 70
L+ F + + A I ++CGK + C+ KS+ + AD++ LA I G A+ +
Sbjct: 14 LMFFVMTGSLNAQVADIKAICGKAKNQSFCTSYMKSNPKTSGADLQTLANITFGSAQTSA 73
Query: 71 RLMAQKLGELLRSTPDSALKTILNGCWLSTGYTAGDFPGIERAVAAGDYTTGRNTLEIAI 130
+K+ L+++ + +K C ++++A+GD + A+
Sbjct: 74 SEGFRKIQSLVKTATNPTMKKAYTSCVQHYKSAISSLNDAKQSLASGDGKGLNIKVSAAM 133
Query: 131 RNVNSCLEE 140
++C ++
Sbjct: 134 EGPSTCEQD 142
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
XP_023536163.1 | 2.91e-117 | 100.00 | uncharacterized protein LOC111797408 [Cucurbita pepo subsp. pepo] | [more] |
KAG6591933.1 | 5.44e-103 | 93.49 | Pectinesterase inhibitor, partial [Cucurbita argyrosperma subsp. sororia] | [more] |
XP_038896712.1 | 3.82e-81 | 72.25 | pectinesterase inhibitor-like [Benincasa hispida] | [more] |
XP_008463801.1 | 9.94e-77 | 67.05 | PREDICTED: pectinesterase inhibitor-like [Cucumis melo] >KAA0066803.1 pectineste... | [more] |
XP_011654411.1 | 1.28e-72 | 65.32 | pectinesterase inhibitor [Cucumis sativus] >KGN55098.1 hypothetical protein Csa_... | [more] |
Match Name | E-value | Identity | Description | |
A0A5D3DXI0 | 4.81e-77 | 67.05 | Pectinesterase inhibitor-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... | [more] |
A0A1S3CK48 | 4.81e-77 | 67.05 | pectinesterase inhibitor-like OS=Cucumis melo OX=3656 GN=LOC103501854 PE=4 SV=1 | [more] |
A0A0A0L044 | 6.19e-73 | 65.32 | PMEI domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G628950 PE=4 S... | [more] |
A0A6J1FJC0 | 9.39e-73 | 66.29 | uncharacterized protein LOC111446254 OS=Cucurbita moschata OX=3662 GN=LOC1114462... | [more] |
A0A6J1J2U5 | 4.43e-71 | 65.14 | uncharacterized protein LOC111480766 OS=Cucurbita maxima OX=3661 GN=LOC111480766... | [more] |
Match Name | E-value | Identity | Description | |
AT3G17220.1 | 5.8e-04 | 20.16 | pectin methylesterase inhibitor 2 | [more] |