Cp4.1LG06g04990 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG06g04990
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionProtein Tat like
LocationCp4.1LG06: 2954671 .. 2955039 (-)
RNA-Seq ExpressionCp4.1LG06g04990
SyntenyCp4.1LG06g04990
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTCCCAGTTTGGATCTGATAGCTCTTGCTTGTCTCTATGGCTGCTTCATTGCACTCACTCTCCTGCTCCTCATCTCCTCCCTCTTGGTTGTGTTCTTTCTATCAGCTACCCTCGCTCTGTTTTCAGTATTTGTGGGGGACTTGTATGATGCTTACTCTGTTTTGTGTCCATATTATGAAGAACTCAAAGCTGAAACTGAATTGGGTGTCTGTTTAATGGTGTATGGAGTAATGGGGTTTGGTGTTGATGTTGTTTTGGGTATAAAATCTCTTTTCCGACAGCAAAATCTAAGATTCACTGTAAGGCTTCCACAGATGAAGGTAAAAGAAAAACGGTGGCTTGGGTTTGGGCTTGACATGCTATGA

mRNA sequence

ATGGTTCCCAGTTTGGATCTGATAGCTCTTGCTTGTCTCTATGGCTGCTTCATTGCACTCACTCTCCTGCTCCTCATCTCCTCCCTCTTGGTTGTGTTCTTTCTATCAGCTACCCTCGCTCTGTTTTCAGTATTTGTGGGGGACTTGTATGATGCTTACTCTGTTTTGTGTCCATATTATGAAGAACTCAAAGCTGAAACTGAATTGGGTGTCTGTTTAATGGTGTATGGAGTAATGGGGTTTGGTGTTGATGTTGTTTTGGGTATAAAATCTCTTTTCCGACAGCAAAATCTAAGATTCACTGTAAGGCTTCCACAGATGAAGGTAAAAGAAAAACGGTGGCTTGGGTTTGGGCTTGACATGCTATGA

Coding sequence (CDS)

ATGGTTCCCAGTTTGGATCTGATAGCTCTTGCTTGTCTCTATGGCTGCTTCATTGCACTCACTCTCCTGCTCCTCATCTCCTCCCTCTTGGTTGTGTTCTTTCTATCAGCTACCCTCGCTCTGTTTTCAGTATTTGTGGGGGACTTGTATGATGCTTACTCTGTTTTGTGTCCATATTATGAAGAACTCAAAGCTGAAACTGAATTGGGTGTCTGTTTAATGGTGTATGGAGTAATGGGGTTTGGTGTTGATGTTGTTTTGGGTATAAAATCTCTTTTCCGACAGCAAAATCTAAGATTCACTGTAAGGCTTCCACAGATGAAGGTAAAAGAAAAACGGTGGCTTGGGTTTGGGCTTGACATGCTATGA

Protein sequence

MVPSLDLIALACLYGCFIALTLLLLISSLLVVFFLSATLALFSVFVGDLYDAYSVLCPYYEELKAETELGVCLMVYGVMGFGVDVVLGIKSLFRQQNLRFTVRLPQMKVKEKRWLGFGLDML
Homology
BLAST of Cp4.1LG06g04990 vs. NCBI nr
Match: KAG7024618.1 (hypothetical protein SDJN02_13436, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 222 bits (566), Expect = 8.42e-71
Identity = 119/122 (97.54%), Postives = 120/122 (98.36%), Query Frame = 0

Query: 1   MVPSLDLIALACLYGCFIALTLLLLISSLLVVFFLSATLALFSVFVGDLYDAYSVLCPYY 60
           MVPSLDLIALACLYGCFIALTLLLLISSLLVVFFLSATLALFSVFVGDLYDAYSVLCPYY
Sbjct: 136 MVPSLDLIALACLYGCFIALTLLLLISSLLVVFFLSATLALFSVFVGDLYDAYSVLCPYY 195

Query: 61  EELKAETELGVCLMVYGVMGFGVDVVLGIKSLFRQQNLRFTVRLPQMKVKEKRWLGFGLD 120
           EELKAETELGVCLM+YGVMGFGVDVVLGIKSLFRQQNLRFTVRLPQMK KEKRWLGFGL 
Sbjct: 196 EELKAETELGVCLMMYGVMGFGVDVVLGIKSLFRQQNLRFTVRLPQMKGKEKRWLGFGLG 255

Query: 121 ML 122
           ML
Sbjct: 256 ML 257

BLAST of Cp4.1LG06g04990 vs. NCBI nr
Match: KAG6591737.1 (putative beta-1,4-xylosyltransferase IRX9H, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 222 bits (566), Expect = 1.38e-66
Identity = 119/122 (97.54%), Postives = 120/122 (98.36%), Query Frame = 0

Query: 1   MVPSLDLIALACLYGCFIALTLLLLISSLLVVFFLSATLALFSVFVGDLYDAYSVLCPYY 60
           MVPSLDLIALACLYGCFIALTLLLLISSLLVVFFLSATLALFSVFVGDLYDAYSVLCPYY
Sbjct: 525 MVPSLDLIALACLYGCFIALTLLLLISSLLVVFFLSATLALFSVFVGDLYDAYSVLCPYY 584

Query: 61  EELKAETELGVCLMVYGVMGFGVDVVLGIKSLFRQQNLRFTVRLPQMKVKEKRWLGFGLD 120
           EELKAETELGVCLM+YGVMGFGVDVVLGIKSLFRQQNLRFTVRLPQMK KEKRWLGFGL 
Sbjct: 585 EELKAETELGVCLMMYGVMGFGVDVVLGIKSLFRQQNLRFTVRLPQMKGKEKRWLGFGLG 644

Query: 121 ML 122
           ML
Sbjct: 645 ML 646

BLAST of Cp4.1LG06g04990 vs. NCBI nr
Match: KGN60326.1 (hypothetical protein Csa_001171 [Cucumis sativus])

HSP 1 Score: 143 bits (361), Expect = 1.88e-41
Identity = 83/120 (69.17%), Postives = 98/120 (81.67%), Query Frame = 0

Query: 1   MVPSLDLIALACLYGCFIALTLLLLISSLLVVFFLSATLALFSVFVGDLYDAYSVLCPYY 60
           MVP+LDL+ALACLYG FIAL LLL+I  LL+V FLS++LALFSVFV DL+DAYSV+  YY
Sbjct: 1   MVPNLDLLALACLYGSFIALILLLIIFFLLIVLFLSSSLALFSVFVSDLFDAYSVMSLYY 60

Query: 61  EELKAETELGVCLMVYGVMGFGVDVVLGIKSLFRQQNLRF-TVRLPQMKVKEKRWLGFGL 119
           E++KAE ELG+ L+V+GVMGFGVDVVL  KSL RQQNLR   +R  QMK KE   LGFG+
Sbjct: 61  EDVKAEIELGLSLIVFGVMGFGVDVVLYTKSLLRQQNLRLKNIRQQQMKFKENWRLGFGM 120

BLAST of Cp4.1LG06g04990 vs. NCBI nr
Match: KAA0038615.1 (hypothetical protein E6C27_scaffold92G001450 [Cucumis melo var. makuwa] >TYK31214.1 hypothetical protein E5676_scaffold455G005000 [Cucumis melo var. makuwa])

HSP 1 Score: 140 bits (352), Expect = 4.41e-40
Identity = 82/120 (68.33%), Postives = 97/120 (80.83%), Query Frame = 0

Query: 1   MVPSLDLIALACLYGCFIALTLLLLISSLLVVFFLSATLALFSVFVGDLYDAYSVLCPYY 60
           MVP+LDL+ALACLYG FIAL LLL+I  LL+V FLS++LALFSVFV DLYDAYSV+  YY
Sbjct: 1   MVPNLDLLALACLYGSFIALILLLVIFFLLIVLFLSSSLALFSVFVSDLYDAYSVMSLYY 60

Query: 61  EELKAETELGVCLMVYGVMGFGVDVVLGIKSLFRQQNLRF-TVRLPQMKVKEKRWLGFGL 119
           E++KAE ELG+ L+++GVMGFGVDVVL  KSL RQQNL    +R  QMKVKEK    FG+
Sbjct: 61  EDVKAEIELGLSLIMFGVMGFGVDVVLRTKSLLRQQNLILKNIRQQQMKVKEKWRFEFGM 120

BLAST of Cp4.1LG06g04990 vs. NCBI nr
Match: KAF9662227.1 (hypothetical protein SADUNF_Sadunf18G0031300 [Salix dunnii])

HSP 1 Score: 67.4 bits (163), Expect = 2.43e-10
Identity = 44/103 (42.72%), Postives = 66/103 (64.08%), Query Frame = 0

Query: 1   MVPSLDLIALACLYGCFIALTLLLLISSLLVVFFLSATLALFSVFVGDLYDAYSVLCPYY 60
           MVP+LDLI LA L+GCFIA  LL++IS++L    L+ +LALFS+ + DL+  +S +    
Sbjct: 181 MVPNLDLIILASLHGCFIACVLLVVISAILSALVLAFSLALFSISIIDLHGVFSSVSRLI 240

Query: 61  EELKAETELGVCLMVYGVMGFGVDVVLGIKSLFRQQNLRFTVR 103
             LK   +LG+ L+V  +M + + V+L  K LF++    F VR
Sbjct: 241 LPLKENLKLGLALLVVMIMYYAIGVMLASKPLFKRMVSEFKVR 283

BLAST of Cp4.1LG06g04990 vs. ExPASy TrEMBL
Match: A0A0A0LJX1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895720 PE=4 SV=1)

HSP 1 Score: 143 bits (361), Expect = 9.12e-42
Identity = 83/120 (69.17%), Postives = 98/120 (81.67%), Query Frame = 0

Query: 1   MVPSLDLIALACLYGCFIALTLLLLISSLLVVFFLSATLALFSVFVGDLYDAYSVLCPYY 60
           MVP+LDL+ALACLYG FIAL LLL+I  LL+V FLS++LALFSVFV DL+DAYSV+  YY
Sbjct: 1   MVPNLDLLALACLYGSFIALILLLIIFFLLIVLFLSSSLALFSVFVSDLFDAYSVMSLYY 60

Query: 61  EELKAETELGVCLMVYGVMGFGVDVVLGIKSLFRQQNLRF-TVRLPQMKVKEKRWLGFGL 119
           E++KAE ELG+ L+V+GVMGFGVDVVL  KSL RQQNLR   +R  QMK KE   LGFG+
Sbjct: 61  EDVKAEIELGLSLIVFGVMGFGVDVVLYTKSLLRQQNLRLKNIRQQQMKFKENWRLGFGM 120

BLAST of Cp4.1LG06g04990 vs. ExPASy TrEMBL
Match: A0A5A7TB69 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G005000 PE=4 SV=1)

HSP 1 Score: 140 bits (352), Expect = 2.13e-40
Identity = 82/120 (68.33%), Postives = 97/120 (80.83%), Query Frame = 0

Query: 1   MVPSLDLIALACLYGCFIALTLLLLISSLLVVFFLSATLALFSVFVGDLYDAYSVLCPYY 60
           MVP+LDL+ALACLYG FIAL LLL+I  LL+V FLS++LALFSVFV DLYDAYSV+  YY
Sbjct: 1   MVPNLDLLALACLYGSFIALILLLVIFFLLIVLFLSSSLALFSVFVSDLYDAYSVMSLYY 60

Query: 61  EELKAETELGVCLMVYGVMGFGVDVVLGIKSLFRQQNLRF-TVRLPQMKVKEKRWLGFGL 119
           E++KAE ELG+ L+++GVMGFGVDVVL  KSL RQQNL    +R  QMKVKEK    FG+
Sbjct: 61  EDVKAEIELGLSLIMFGVMGFGVDVVLRTKSLLRQQNLILKNIRQQQMKVKEKWRFEFGM 120

BLAST of Cp4.1LG06g04990 vs. ExPASy TrEMBL
Match: A0A6A1UX23 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR8G014171 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.20e-09
Identity = 42/101 (41.58%), Postives = 65/101 (64.36%), Query Frame = 0

Query: 1   MVPSLDLIALACLYGCFIALTLLLLISSLLVVFFLSATLALFSVFVGDLYDAYSVLCPYY 60
           M+P+LDL+ LA LYG FIA  LL ++S +L+   L+ ++ LFS+ V DL+  +SV   +Y
Sbjct: 1   MIPNLDLLLLAFLYGSFIACVLLAVLSVILLSLCLAFSVTLFSIVVIDLHYVFSVCSLHY 60

Query: 61  EELKAETELGVCLMVYGVMGFGVDVVLGIKSLFRQQ--NLR 99
             LKA  +LG  L++Y +M + V +VL  K+   Q+  N+R
Sbjct: 61  ITLKANLQLGSVLILYIIMRYSVPMVLASKASLEQKIYNIR 101

BLAST of Cp4.1LG06g04990 vs. ExPASy TrEMBL
Match: A0A5N5J7Y9 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_027916 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.96e-08
Identity = 40/100 (40.00%), Postives = 61/100 (61.00%), Query Frame = 0

Query: 1   MVPSLDLIALACLYGCFIALTLLLLISSLLVVFFLSATLALFSVFVGDLYDAYSVLCPYY 60
           MVP+LDLI L  L+GCFIA  L+++IS++L    L+ +LALFS+ + DL+  +S +    
Sbjct: 1   MVPNLDLIILTFLHGCFIACVLVVVISAILSALVLAFSLALFSISIIDLHGVFSSVSRLI 60

Query: 61  EELKAETELGVCLMVYGVMGFGVDVVLGIKSLFRQQNLRF 100
             LK   +LG+ L+V  +  + + VVL  K LF +    F
Sbjct: 61  LPLKENLKLGLALLVVTITYYAIGVVLASKPLFDRMVSEF 100

BLAST of Cp4.1LG06g04990 vs. ExPASy TrEMBL
Match: A0A6N2NHX1 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS506179 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.83e-08
Identity = 41/101 (40.59%), Postives = 63/101 (62.38%), Query Frame = 0

Query: 1   MVPSLDLIALACLYGCFIALTLLLLISSLLVVFFLSATLALFSVFVGDLYDA-YSVLCPY 60
           MVP+LDLI L  L+GCFIA  LL++IS++ +   L+ +LALFS+ + DL+   +S +   
Sbjct: 1   MVPNLDLIILTFLHGCFIACVLLVVISAISLALVLALSLALFSISIIDLHGVVFSSVSRL 60

Query: 61  YEELKAETELGVCLMVYGVMGFGVDVVLGIKSLFRQQNLRF 100
              LK   +LG+ L+V  +M + + VVL  K LF + +  F
Sbjct: 61  ILPLKENLKLGLALLVVTIMYYAIGVVLASKPLFDRMDSEF 101

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG7024618.18.42e-7197.54hypothetical protein SDJN02_13436, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6591737.11.38e-6697.54putative beta-1,4-xylosyltransferase IRX9H, partial [Cucurbita argyrosperma subs... [more]
KGN60326.11.88e-4169.17hypothetical protein Csa_001171 [Cucumis sativus][more]
KAA0038615.14.41e-4068.33hypothetical protein E6C27_scaffold92G001450 [Cucumis melo var. makuwa] >TYK3121... [more]
KAF9662227.12.43e-1042.72hypothetical protein SADUNF_Sadunf18G0031300 [Salix dunnii][more]
Match NameE-valueIdentityDescription
A0A0A0LJX19.12e-4269.17Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895720 PE=4 SV=1[more]
A0A5A7TB692.13e-4068.33Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6A1UX235.20e-0941.58Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR8G014171 PE=4 SV=1[more]
A0A5N5J7Y91.96e-0840.00Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_027916 PE=4 SV=1[more]
A0A6N2NHX12.83e-0840.59Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS506179 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG06g04990.1Cp4.1LG06g04990.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane