Cp4.1LG06g04320 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG06g04320
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	pre-rRNA-processing protein TSR2 homolog
Location	Cp4.1LG06: 2489705 .. 2494481 (-)
RNA-Seq Expression	Cp4.1LG06g04320
Synteny	Cp4.1LG06g04320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGTGGCGAAAACCGCCTTCTCCCAGCTGGTGCTTTGCCATTGTTCCAGGAAGGCATCGGGTTGGTTTTATCTCGTTGGTCAGCTCTTCAATTGGCAGTGGAAAACGAGTGGGGCGGTCGGGACTCTCGTCGTAAAGTCGAACTATTATGCTCTGACATTCTCACATGGTTTACTCAGAACAAAGGTAATTTTGGCCCTTTCCACTTGGGTAATCTTTTACCTTCCTTCGTGCATTGTTCCTCTTTCTGCAGTTTCTCAGGTCCAGTAGTGTTGTTTATTGCAAGCAATTAAATATTTATTTGTTGTAACTTCGTGAAGAAGCAGTTTGTATAATCATAGAAAGGGAAAATTCATTTAGTGGCTTAATAAGCGTTTTAAAATGTGCACAAAGGTGCGTGCCTAGGCATGGCCCCGACGTCTCGCTTCAAAGAAGTAAGGCTCCCCCAATGAAGAATACCCGAGGAAATCTCCCTTAATTACTTTTAAGAAAGAAACTCATGAATATTGTTAAAAAGCATTCTGAAATAAACTTAAATTTTTCATCATCTTATTATATGTAATGTTTTTTTTTCTTTGTATATAAAAAAAATTATATGTATATATCTTTTGTTTGGTAAAAAAAAAATCCAGAAATATAGTTTCTAGCTTGTATTTTCTCTGATATTCACTTTGGTCGTAGTGGAACTTGATACCATGTAAGCAAGACGTTTATAGTTCCACATTAGAATACTTCATTTTTTTATTTTGATCTGAGAGAGTTATAGTTTTTATCTTGCAGAGCCACTATATATTGATGATTTAGAAATGATTCTTGATGAAGCTTTGCTTTCGTTGAATACTCAGGTTGATGATGGTAGCATTGAGGAGGTATATTTTATACCCTTCTCAATTCTTGTTAGTCTTTGTGGAAAGCCCTTTTCCTCATACTTCAGACCTAGTTAATACAATTTTTTTTGCTCGAGTCTAGTTGAAATTCATTTTCTTAATCAAATAAATTTATTGTATATTGAGTTTGGTTATTTACAAATGACTTACTACTGTTGATGGATATTTTTTCTACCCAAATTGGCTCCGGTTGGTTCTCNGAAAATGTGTTTTGTTCCTTGTTATGTGCTCACATAATGATAAGACAGACAGACAAGAAGATTACGCTTGTTATTCTACTTGCTCTTTGATAATTGGGGTTTTAGGGTTCTGCGTTTGGAGGCGGAGAGATGGAAGGTGGCGAAAACCGCCTTCTCCCAGCTGGTGCTTTGCCATTGTTCCAGGAAGGCATCGGGTTGGTTTTATCTCGTTGGTCAGCTCTTCAATTGGCAGTGGAAAACGAGTGGGGCGGTCGGGACTCTCGTCGTAAAGTCGAACTATTATGCTCTGACATTCTCACATGGTTTACTCAGAACAAAGGTAATTTTGGCCCTTTCCACTTGGGTAATCTTTTACCTTCCTTCGTGCATTGTTCCTCTTTCTGCAGTTTCTCAGGTCCAGTAGTGTTGTTTATTGCAAGCAATTAAATATTTATTTGTTGTAACTTTGTGAAGAAGCAGTTTGTATAATCATAGAAAGGGAAATNCGTGAAGAAGCAGTTTGTATAATCATAGAAAAGGGAAATTCATTTAGTGGCTTAATAAGCGTTTTAAAATGTGCACAAAGGTGCGTGCCTAGGCATGGCCCCGACGTCTCGCTTCAAAGAAGTAAGGCTCCCCCAATGAAGAATACCCGAGGANTGTGAAGAAGCAGTTTGTATAATCATAGAAAGGGAAATTCATTTGGTGGCTTCGTAAGCGTTTTAAAATGTTCACAGAGGCGTGTGCCTAGGCATGGCCCCGACGTCTTGCTTCAAAGAAGTAAGGCTCCCCCAATGAAGAATACCCGAGGAAATCTCCCTTAATTACTTTTAAGAAAGAAACTCATGAATATTGTTAAAAAGCATTCTGAAATAAACTTAAATTTTTCATCATCTTATTATATGTAATGTTTTTTTTTCTTTGTATATAAAAAAAATTATATGTATATATCTTTTGTTTGGTAAAAAAAAAATCCAGAAATATAGTTTCTAGCTTGTATTTTCTCTGATATTCACTTTGGTCGTAGTGGAACTTGATACCATGTAAGCAAGACGTTTATAGTTCCACATTAGAATACTTCATTTTTTTATTTTGATCTGAGAGAGTTATAGTTTTTATCTTGCAGAGCCACTATATATTGATGATTTAGAAATGATTCTTGATGAAGCTTTGCTTTCGTTGAATACTCAGGTTGATGATGGTAGCATTGAGGAGGTATATTTTATACCCTTCTCAATTCTTGTTAGTCTTTGTGGAAAGCCCTTTTCCTCATACTTCAGATCTAGTTAATACAATTTTTTTTGCTCGAGTCTAGTTGAAATTCATTTTCTTAATCAAATAAATTTATTGTATATTGAGTTTGGTTATTTACAAATGACTTACTACTGTTGATGGATATTTTTTCTACCCAAATTGGCTCCGGTTGGTTCTCGTTAGAATGGAGTTCTTAAGAGAGATTATGAAATATTTGCCTCCACCTCTTAGTCTCATTGCACAATGCTTATGGTTGGAATCCATAGAGATGTTATTGAACTTGTAGCTATTCATTGCTTTGGTTGTGACTTCTGAAGATATTGATCGGTAGATGGTGGTGATTTTATGATACCTTCGTAGTGAAACCTTATGTAGTTCATTAATTTTGAATCTAACAACTTGTTACATCTACGTTAAAAGTGAATTTCTTTTCTTTGGAATCATTTTCAATTTTTGCCAGAACTAACTGGAAAAATACTTGAGAAGTTCATGATTTCAAATACATTTGTCCGGTTGCATTATTTACCAGTTCAACATTGTGAGATCCCACATCGGTTGGGGAGGAGAACGAAACATTCTTTATACGGGTGTAGAAACCTCTTCCTAGCAGACGCGTTGTAAAAATCTTAAGGGGAAGCCCGAAAGGGAAAGTCCAAAGATGACAATATCTATTAGCAGTGAGCTTGGGCTTGGGCTGTTACACACGTTCTCCTTTATTATAGTTCTTGGTTGAAGTAGAAGAATAAGATACAAAATAGAAACAGATGGAGAAAAAAGAGGATGGGGGTAAAAGTTGAGTGAGGTCAATGATGCTTGTGTTTAAAATCACTTCTGAAAAGTGAAATGTGTTCCTATCTTGTAGCTCCTTCAAGAATTGAGTCGTTACTCTTATTAATGGATTTTTGTTTCTTGTGTTTCTTCCTAATAATGCAGGTAGCTGAAAGATTGATTGTCATGCATGAGGAATGTCTGGATGGTAACTTTAGCTCTATCGAGAAGTTAAGGCAATCCCCTCTTCCTCAAGTTGCTCGTTCTCACGTTAGTCAGGTAACATGAATGTTTGTCCTAAACCGTTTCGTTTTTTCATAGGCTCACTTTTGAAGTCAAAAGTATATGTTAAAAAGGAACTTAATGTCCAGTAGTGTTATTCCTTGGTATACATTGCCGTAACTTATGGCCAAAAGAGGCAGTCTAGATGGAGAAAATGACGAAGATGGTAAAGAGAGGGCATGGAAGAAATTGGTGGTAGAAAAATGTAGTGGAGCNATACATTGCCGTAACTTATGGCCAAAAAGAGGCAGTCTAGATGGAGAAAATGACGAAGATGGTAAAGAGAGGGCATGGAAGAAAATTGGTGGTAGAAAAATGTAGTGGAGCTAAGAGAGGAATGTGAATGAGTGTAAGCTTCGTGACCCGAACTTGATTGACTAGATGTGGGTTTTGGGACTTCAGCTTGGGCGCGGGACTGTTTAAATGGCAAAGAACCCCTTAGTCGCCGAGTCTAGTTACTGTCTTTTTCCAAGTACTTTCGAATGCAAGGTGCCGTTTCTGTCTTCTTTGTTAGACTGGAGGCCTTTCATCTAGCATGCTCTCTTTTGTGGGCTTGTTCGTTTTTCTTTCATATATATTCTTTTCAATTTCAGTCTCTTATCGAAAAATAATAATAACTCGTGGAATAAGAACTTGCTGAAGAGATTTTGTCACAGTCCGATACCACCACTAGAAAATATTGTCCATTTTAACCCATTCTGTATCGCCATCAGCCTTACGATTTTAAAACACGTTTGCTAGGGAGAGGTTCCACACCCTTGTAAGGAATTCTTTGTTCCCCCCTCCAACCGATGTGGGATCTCACAGATTAAAATGGCCACTTACGCAGTTTCTGCATCAGCTCATTTCATTACGGGTCGATCATANCTGTATCGCCATCAGCCTTACGATTTTAAAACACGTTTGCTAGAGAGAGGTTTCCACACCCTTATAAGGAATTCTTCGTTCCCCTCTCCAACCGATGTGGGATCTCACAGATTAAAATGGCCACTCACGCAGTTTCTGCATCAGCTCATTTCATTACGGGTCGATCATAATTGCATCTTTGAGAAAATGTCATTCATACTACAAAACAAACAAAACATTTGCTTCTTGTATAGAGTATCTTCTAATCTTGACATTGATGAATTTTAAAGGTTATGAGCGATGATGATGAAGAAGAAGATGAAGAAGAGGGTGGTGATGTTGTTGTTGGAAATGGAAGGAGGGATATGATGGTGGATGCCACACAACCCAGGCCTGTCAATCAGCCCACTCCAGAGGCCACAGCAGAAGCCGAAGATGGATGGGTGCAAGTCACATCAAGAAGAAGTANTACAACCCAGGCCTGTCGATCAGCCCACTTCAGAGGCCACAGCCGAAGCCGAAGATGGATGGGTGCAAGTCACATCAAGAAGAAGTAG

mRNA sequence

ATGGAAGGTGGCGAAAACCGCCTTCTCCCAGCTGGTGCTTTGCCATTGTTCCAGGAAGGCATCGGGTTGGTTTTATCTCGTTGGTCAGCTCTTCAATTGGCAGTGGAAAACGAGTGGGGCGGTCGGGACTCTCGTCGTAAAGTCGAACTATTATGCTCTGACATTCTCACATGGTTTACTCAGAACAAAGAGCCACTATATATTGATGATTTAGAAATGATTCTTGATGAAGCTTTGCTTTCGTTGAATACTCAGGTTGATGATGGTAGCATTGAGGAGGGTTCTGCGTTTGGAGGCGGAGAGATGGAAGGTGGCGAAAACCGCCTTCTCCCAGCTGGTGCTTTGCCATTGTTCCAGGAAGGCATCGGGTTGGTTTTATCTCGTTGGTCAGCTCTTCAATTGGCAGTGGAAAACGAGTGGGGCGGTCGGGACTCTCGTCGTAAAGTCGAACTATTATGCTCTGACATTCTCACATGGTTTACTCAGAACAAAGAGCCACTATATATTGATGATTTAGAAATGATTCTTGATGAAGCTTTGCTTTCGTTGAATACTCAGGTTGATGATGGTAGCATTGAGGAGGTAGCTGAAAGATTGATTGTCATGCATGAGGAATGTCTGGATGGTAACTTTAGCTCTATCGAGAAGTTAAGGCAATCCCCTCTTCCTCAAGTTGCTCGTTCTCACGTTAGTCAGGTTATGAGCGATGATGATGAAGAAGAAGATGAAGAAGAGGGTGGTGATGTTGTTGTTGGAAATGGAAGGAGGGATATGATGGTGGATGCCACACAACCCAGGCCTGTCAATCAGCCCACTCCAGAGGCCACAGCAGAAGCCGAAGATGGATGGGTGCAAGTCACATCAAGAAGAAGTANTACAACCCAGGCCTGTCGATCAGCCCACTTCAGAGGCCACAGCCGAAGCCGAAGATGGATGGGTGCAAGTCACATCAAGAAGAAGTAG

Coding sequence (CDS)

ATGGAAGGTGGCGAAAACCGCCTTCTCCCAGCTGGTGCTTTGCCATTGTTCCAGGAAGGCATCGGGTTGGTTTTATCTCGTTGGTCAGCTCTTCAATTGGCAGTGGAAAACGAGTGGGGCGGTCGGGACTCTCGTCGTAAAGTCGAACTATTATGCTCTGACATTCTCACATGGTTTACTCAGAACAAAGAGCCACTATATATTGATGATTTAGAAATGATTCTTGATGAAGCTTTGCTTTCGTTGAATACTCAGGTTGATGATGGTAGCATTGAGGAGGGTTCTGCGTTTGGAGGCGGAGAGATGGAAGGTGGCGAAAACCGCCTTCTCCCAGCTGGTGCTTTGCCATTGTTCCAGGAAGGCATCGGGTTGGTTTTATCTCGTTGGTCAGCTCTTCAATTGGCAGTGGAAAACGAGTGGGGCGGTCGGGACTCTCGTCGTAAAGTCGAACTATTATGCTCTGACATTCTCACATGGTTTACTCAGAACAAAGAGCCACTATATATTGATGATTTAGAAATGATTCTTGATGAAGCTTTGCTTTCGTTGAATACTCAGGTTGATGATGGTAGCATTGAGGAGGTAGCTGAAAGATTGATTGTCATGCATGAGGAATGTCTGGATGGTAACTTTAGCTCTATCGAGAAGTTAAGGCAATCCCCTCTTCCTCAAGTTGCTCGTTCTCACGTTAGTCAGGTTATGAGCGATGATGATGAAGAAGAAGATGAAGAAGAGGGTGGTGATGTTGTTGTTGGAAATGGAAGGAGGGATATGATGGTGGATGCCACACAACCCAGGCCTGTCAATCAGCCCACTCCAGAGGCCACAGCAGAAGCCGAAGATGGATGGGTGCAAGTCACATCAAGAAGAAGTANTACAACCCAGGCCTGTCGATCAGCCCACTTCAGAGGCCACAGCCGAAGCCGAAGATGGATGGGTGCAAGTCACATCAAGAAGAAGTAG

Protein sequence

MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFTQNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEGSAFGGGEMEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFTQNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSPLPQVARSHVSQVMSDDDEEEDEEEGGDVVVGNGRRDMMVDATQPRPVNQPTPEATAEAEDGWVQVTSRRSXTTQACRSAHFRGHSRSRRWMGASHIKKK

Homology

[Close]

BLAST of Cp4.1LG06g04320 vs. ExPASy Swiss-Prot
Match: Q3KRG3 (Pre-rRNA-processing protein TSR2 homolog OS=Danio rerio OX=7955 GN=tsr2 PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.3e-11
Identity = 54/186 (29.03%), Postives = 89/186 (47.85%), Query Frame = 0


Query: 110 LPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFTQNKEPLYI 169
           L +    +F E +  VL  W  LQ+AV+N +GG  S++K E +   +  +FT N + L  
Sbjct: 4   LSSSTREVFSEAVRAVLETWPVLQIAVDNGFGGAFSQQKAEWMVDALQQYFTDNGD-LQP 63

Query: 170 DDLEMILDEALLS-LNTQVDDGSIEEVAERLIVMHEECLDGNFSSIE----KLRQSPLPQ 229
           D++E  + E + +  +T VDDGS+ +VA+++  M ++C  G  + +     KL Q     
Sbjct: 64  DEVEDFISELMNNEFDTVVDDGSLPQVAQQVCGMFQQCEQGRLAEVREQILKLNQKKTSS 123

Query: 230 VARSHVSQVMSDDDEEEDEEEGGDVVVGNGRRDMMVDATQPRPVNQPTPEATAEAEDGWV 289
                       DD+++DEEE  D   G+    +   A     VN    E   E +DGW 
Sbjct: 124 GRAKATPAQTPQDDDDDDEEEAMDCEGGSAGASVSSTA-----VNDLHHE--EEEDDGWT 181

Query: 290 QVTSRR 291
            V  ++
Sbjct: 184 VVRRKK 181

[Close]

BLAST of Cp4.1LG06g04320 vs. ExPASy Swiss-Prot
Match: Q3KPN2 (Pre-rRNA-processing protein TSR2 homolog OS=Xenopus laevis OX=8355 GN=tsr2 PE=2 SV=2)

HSP 1 Score: 68.6 bits (166), Expect = 1.5e-10
Identity = 57/183 (31.15%), Postives = 87/183 (47.54%), Query Frame = 0


Query: 117 LFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFTQNKEPLYIDDLEMIL 176
           LF+E    VL  W  LQ+AVEN +GG  S+ K E +   I  +F+ N +    +  + I+
Sbjct: 11  LFREATKAVLGSWPVLQIAVENGFGGSHSQEKAEWMVGAIDQYFSSNADLEQYEVEDSIM 70

Query: 177 DEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSPLPQVA------RSHV 236
                  +T V+DGS   VA++L V+  +C  G  +++    Q+ + Q+A      R+ V
Sbjct: 71  GMMNDEFDTIVEDGSQALVAQQLCVLFSQCRQGETAAV----QAKIAQLAQKKYDVRAKV 130

Query: 237 SQVMSDDDEEE---DEEEGGDVVVGNGRRDMMVDATQPRPVNQPTPEATAEAEDGWVQVT 291
            +V   DDEEE   DEEE  D     G       +    P + P  E   E +DGW  V 
Sbjct: 131 QEVTPSDDEEESSDDEEEAMDCENTPGSSSAASLSGALGPSSAPKKEEEPE-DDGWTVVR 188

[Close]

BLAST of Cp4.1LG06g04320 vs. ExPASy Swiss-Prot
Match: Q3T090 (Pre-rRNA-processing protein TSR2 homolog OS=Bos taurus OX=9913 GN=TSR2 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 7.0e-08
Identity = 48/181 (26.52%), Postives = 85/181 (46.96%), Query Frame = 0


Query: 117 LFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFTQNKEPLYIDDLEMIL 176
           LF   +   L  W ALQ+AVEN +GG  S+ K E L   +  +F +N + L +D++E  L
Sbjct: 11  LFGAAVRAALEAWPALQIAVENGFGGVYSQEKAEWLGGAVEEYFFRNAD-LELDEVEDFL 70

Query: 177 DEALLS-LNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKL------RQSPLPQVARSH 236
            E +++  +T V+DGS+ +V+++L  M      G+ ++++++      R+  +   A   
Sbjct: 71  GELMMNEFDTVVEDGSLPQVSQQLQTMFHHFQKGDRAALKEMASLITQRKCKVRATALPT 130

Query: 237 VSQVMSDDDEEEDEEEGGDVVVGNGRRDMMVDATQPRPVNQPTPEATAEAEDGWVQVTSR 291
             +   DDD    EE            D +    +P   +  T +     EDGW  V  +
Sbjct: 131 AGETDEDDDANSVEEMEVAATNDGAATDGVCPQPEPSGPDSQTIKEEDIVEDGWTIVRRK 190

[Close]

BLAST of Cp4.1LG06g04320 vs. ExPASy Swiss-Prot
Match: Q8C8T8 (Pre-rRNA-processing protein TSR2 homolog OS=Mus musculus OX=10090 GN=Tsr2 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.5e-07
Identity = 46/182 (25.27%), Postives = 85/182 (46.70%), Query Frame = 0


Query: 117 LFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFTQNKEPLYIDDLEMIL 176
           LF   +   L  W ALQ+AVEN +GG  S+ K E L   +  +F  N + L ++++E  L
Sbjct: 11  LFGAAVRAALEAWPALQIAVENGFGGVHSQEKAEWLGGAVEDYFIANAD-LELEEIEDFL 70

Query: 177 DEALLS-LNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSPLPQVARSHVSQVM- 236
            E + +  +T V+DGS+ +V+++L  M      G+ ++++++      +  +   + +M 
Sbjct: 71  GELMTTEFDTVVEDGSLPQVSQQLQTMFHHFQKGDGAALQEMTSQINQKKCKVTATPLMT 130

Query: 237 ------SDDDEEEDEEEGGDVVVGNGRRDMMVDATQPRPVNQPTPEATAEAEDGWVQVTS 291
                 ++DD +  EE            D +    QP   +  T +     EDGW  V  
Sbjct: 131 AKETDVAEDDVDSVEEMEVTATNDGATTDEVCPQPQPSDPDTQTIKEEDIVEDGWTIVRR 190

[Close]

BLAST of Cp4.1LG06g04320 vs. ExPASy Swiss-Prot
Match: Q969E8 (Pre-rRNA-processing protein TSR2 homolog OS=Homo sapiens OX=9606 GN=TSR2 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 1.1e-05
Identity = 32/84 (38.10%), Postives = 50/84 (59.52%), Query Frame = 0


Query: 13 ALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFTQNKEPLYIDDLE 72
          A  LF+ G+   L  W ALQ+AVEN +GG  S+ K + L   +  +F +N + L +D++E
Sbjct: 8  ARALFRAGVCAALEAWPALQIAVENGFGGVHSQEKAKWLGGAVEDYFMRNAD-LELDEVE 67

Query: 73 MILDEALLS-LNTQVDDGSIEEGS 96
            L E L +  +T V+DGS+ + S
Sbjct: 68 DFLGELLTNEFDTVVEDGSLPQVS 90

[Close]

BLAST of Cp4.1LG06g04320 vs. NCBI nr
Match: XP_023534881.1 (pre-rRNA-processing protein TSR2 homolog isoform X1 [Cucurbita pepo subsp. pepo] >XP_023534882.1 pre-rRNA-processing protein TSR2 homolog isoform X2 [Cucurbita pepo subsp. pepo] >XP_023534883.1 pre-rRNA-processing protein TSR2 homolog isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 375 bits (962), Expect = 1.36e-128
Identity = 191/194 (98.45%), Postives = 192/194 (98.97%), Query Frame = 0


Query: 102 MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 161
           MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT
Sbjct: 1   MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 60

Query: 162 QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 221
           QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP
Sbjct: 61  QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 120

Query: 222 LPQVARSHVSQVMSDDDEEEDEEEGGDVVVGNGRRDMMVDATQPRPVNQPTPEATAEAED 281
           LPQVARSHVSQVMSDDDEEEDEEEGGDVVVGNGRRDMMVDATQPRPVNQPTPEATAEAED
Sbjct: 121 LPQVARSHVSQVMSDDDEEEDEEEGGDVVVGNGRRDMMVDATQPRPVNQPTPEATAEAED 180

Query: 282 GWVQVTSRRSXTTQ 295
           GWVQVTSRRS  T+
Sbjct: 181 GWVQVTSRRSRGTR 194

[Close]

BLAST of Cp4.1LG06g04320 vs. NCBI nr
Match: XP_022936382.1 (pre-rRNA-processing protein TSR2 homolog [Cucurbita moschata])

HSP 1 Score: 369 bits (946), Expect = 3.71e-126
Identity = 188/194 (96.91%), Postives = 190/194 (97.94%), Query Frame = 0


Query: 102 MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 161
           MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT
Sbjct: 1   MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 60

Query: 162 QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 221
           QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP
Sbjct: 61  QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 120

Query: 222 LPQVARSHVSQVMSDDDEEEDEEEGGDVVVGNGRRDMMVDATQPRPVNQPTPEATAEAED 281
           LP+VARSHVSQVMSDDDEEEDEEEGGDVVVGNGRRDMMVDA QP PVNQPTPEATAEAED
Sbjct: 121 LPRVARSHVSQVMSDDDEEEDEEEGGDVVVGNGRRDMMVDAIQPTPVNQPTPEATAEAED 180

Query: 282 GWVQVTSRRSXTTQ 295
           GWVQVTSRRS  T+
Sbjct: 181 GWVQVTSRRSRGTR 194

[Close]

BLAST of Cp4.1LG06g04320 vs. NCBI nr
Match: KAG7024555.1 (Pre-rRNA-processing protein TSR2-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 356 bits (914), Expect = 3.04e-121
Identity = 186/197 (94.42%), Postives = 188/197 (95.43%), Query Frame = 0


Query: 102 MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 161
           MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT
Sbjct: 1   MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 60

Query: 162 QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 221
           QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP
Sbjct: 61  QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 120

Query: 222 LPQVARSHVSQVMSDDDEEEDEE---EGGDVVVGNGRRDMMVDATQPRPVNQPTPEATAE 281
           LP+VARSHVSQVMSDDDEEEDEE   EGGDVVV NGRRDMMVDA Q  PVNQPTPEATAE
Sbjct: 121 LPRVARSHVSQVMSDDDEEEDEEDEEEGGDVVVENGRRDMMVDAIQLTPVNQPTPEATAE 180

Query: 282 AEDGWVQVTSRRSXTTQ 295
           AEDGWVQVTSRRS  T+
Sbjct: 181 AEDGWVQVTSRRSRGTR 197

[Close]

BLAST of Cp4.1LG06g04320 vs. NCBI nr
Match: XP_022975934.1 (pre-rRNA-processing protein TSR2 homolog [Cucurbita maxima])

HSP 1 Score: 356 bits (913), Expect = 3.75e-121
Identity = 185/194 (95.36%), Postives = 187/194 (96.39%), Query Frame = 0


Query: 102 MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 161
           MEGGENRLLPA ALP FQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT
Sbjct: 1   MEGGENRLLPAVALPSFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 60

Query: 162 QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 221
           QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP
Sbjct: 61  QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 120

Query: 222 LPQVARSHVSQVMSDDDEEEDEEEGGDVVVGNGRRDMMVDATQPRPVNQPTPEATAEAED 281
           LP+VARSHVSQVMSDD EEEDEEEGGDV VGNGRRDMMVDA QPRPVNQPTPEATAEAED
Sbjct: 121 LPKVARSHVSQVMSDD-EEEDEEEGGDVDVGNGRRDMMVDAIQPRPVNQPTPEATAEAED 180

Query: 282 GWVQVTSRRSXTTQ 295
           GWVQVTSRRS  T+
Sbjct: 181 GWVQVTSRRSRGTR 193

[Close]

BLAST of Cp4.1LG06g04320 vs. NCBI nr
Match: KAG6591676.1 (Pre-rRNA-processing protein TSR2-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 347 bits (890), Expect = 2.50e-115
Identity = 181/193 (93.78%), Postives = 184/193 (95.34%), Query Frame = 0


Query: 106 ENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFTQNKE 165
           +NRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFTQNKE
Sbjct: 156 KNRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFTQNKE 215

Query: 166 PLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSPLPQV 225
           PLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSPLP+V
Sbjct: 216 PLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSPLPRV 275

Query: 226 ARSHVSQVMSDDDEEEDEE---EGGDVVVGNGRRDMMVDATQPRPVNQPTPEATAEAEDG 285
           ARSHVSQVMSDDDEEEDEE   EGGDVVV NGRRDMMVDA Q  PVNQPTPEATAEAEDG
Sbjct: 276 ARSHVSQVMSDDDEEEDEEDEEEGGDVVVENGRRDMMVDAIQLTPVNQPTPEATAEAEDG 335

Query: 286 WVQVTSRRSXTTQ 295
           WVQVTSRRS  T+
Sbjct: 336 WVQVTSRRSRGTR 348

[Close]

BLAST of Cp4.1LG06g04320 vs. ExPASy TrEMBL
Match: A0A6J1F8A7 (pre-rRNA-processing protein TSR2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111443017 PE=3 SV=1)

HSP 1 Score: 369 bits (946), Expect = 1.80e-126
Identity = 188/194 (96.91%), Postives = 190/194 (97.94%), Query Frame = 0


Query: 102 MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 161
           MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT
Sbjct: 1   MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 60

Query: 162 QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 221
           QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP
Sbjct: 61  QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 120

Query: 222 LPQVARSHVSQVMSDDDEEEDEEEGGDVVVGNGRRDMMVDATQPRPVNQPTPEATAEAED 281
           LP+VARSHVSQVMSDDDEEEDEEEGGDVVVGNGRRDMMVDA QP PVNQPTPEATAEAED
Sbjct: 121 LPRVARSHVSQVMSDDDEEEDEEEGGDVVVGNGRRDMMVDAIQPTPVNQPTPEATAEAED 180

Query: 282 GWVQVTSRRSXTTQ 295
           GWVQVTSRRS  T+
Sbjct: 181 GWVQVTSRRSRGTR 194

[Close]

BLAST of Cp4.1LG06g04320 vs. ExPASy TrEMBL
Match: A0A6J1IM14 (pre-rRNA-processing protein TSR2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111476490 PE=3 SV=1)

HSP 1 Score: 356 bits (913), Expect = 1.82e-121
Identity = 185/194 (95.36%), Postives = 187/194 (96.39%), Query Frame = 0


Query: 102 MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 161
           MEGGENRLLPA ALP FQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT
Sbjct: 1   MEGGENRLLPAVALPSFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 60

Query: 162 QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 221
           QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP
Sbjct: 61  QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 120

Query: 222 LPQVARSHVSQVMSDDDEEEDEEEGGDVVVGNGRRDMMVDATQPRPVNQPTPEATAEAED 281
           LP+VARSHVSQVMSDD EEEDEEEGGDV VGNGRRDMMVDA QPRPVNQPTPEATAEAED
Sbjct: 121 LPKVARSHVSQVMSDD-EEEDEEEGGDVDVGNGRRDMMVDAIQPRPVNQPTPEATAEAED 180

Query: 282 GWVQVTSRRSXTTQ 295
           GWVQVTSRRS  T+
Sbjct: 181 GWVQVTSRRSRGTR 193

[Close]

BLAST of Cp4.1LG06g04320 vs. ExPASy TrEMBL
Match: A0A6J1J400 (pre-rRNA-processing protein TSR2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111481044 PE=3 SV=1)

HSP 1 Score: 291 bits (746), Expect = 6.09e-96
Identity = 158/198 (79.80%), Postives = 170/198 (85.86%), Query Frame = 0


Query: 102 MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 161
           MEGG NRLLPA A PLFQEGIGLVLSRWSALQLAV+NEWGGRDSRRKVELLCSDI TWFT
Sbjct: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFT 60

Query: 162 QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 221
           QNKE LYIDDLEMILDE +LSLNTQVDDGSIEEVAE+LI MHEEC+DGNFSSI +LRQSP
Sbjct: 61  QNKETLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIGRLRQSP 120

Query: 222 LPQVARSHVSQVMSDDDEEEDEEEGGDVV-VGNG----RRDMMVDATQ--PRPVNQ-PTP 281
           LP+ A SHVSQ MSD++EEE+E++  D   VGNG    R DMMVDA Q  PR VNQ P P
Sbjct: 121 LPRGAHSHVSQAMSDEEEEEEEDDDDDDGDVGNGSDGMRNDMMVDAIQQQPRAVNQQPRP 180

Query: 282 EATAEAEDGWVQVTSRRS 291
           EA+A AEDGWVQVTSRRS
Sbjct: 181 EASAPAEDGWVQVTSRRS 198

[Close]

BLAST of Cp4.1LG06g04320 vs. ExPASy TrEMBL
Match: A0A6J1FPH6 (pre-rRNA-processing protein TSR2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111446075 PE=3 SV=1)

HSP 1 Score: 291 bits (744), Expect = 1.18e-95
Identity = 157/199 (78.89%), Postives = 169/199 (84.92%), Query Frame = 0


Query: 102 MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 161
           M+G  NRLLPA A PLFQEGIGLVLSRWSALQLAV+NEWGGRDSRRKVELLCSDI TWFT
Sbjct: 1   MDGSGNRLLPADAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFT 60

Query: 162 QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 221
           QNKE LYIDDLEMILDE +LSLNTQVDDGSIEEVAE+LI MHEEC+DGNFSSIE+LRQSP
Sbjct: 61  QNKETLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSP 120

Query: 222 LPQVARSHVSQVMSDDDEEEDEEEGGDVVVGNG----RRDMMVDATQ----PRPVNQPT- 281
           LP+ A SHVSQ MSDD+EEE+E++  D   GNG    R DMMVDA Q    PR VNQP  
Sbjct: 121 LPRGAHSHVSQAMSDDEEEEEEDDDDDG--GNGGDGMRNDMMVDAIQQQQQPRAVNQPRR 180

Query: 282 PEATAEAEDGWVQVTSRRS 291
           PEA+A AEDGWVQVTSRRS
Sbjct: 181 PEASAPAEDGWVQVTSRRS 197

[Close]

BLAST of Cp4.1LG06g04320 vs. ExPASy TrEMBL
Match: A0A5D3E598 (Pre-rRNA-processing protein TSR2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G006020 PE=3 SV=1)

HSP 1 Score: 288 bits (737), Expect = 9.68e-95
Identity = 157/198 (79.29%), Postives = 167/198 (84.34%), Query Frame = 0


Query: 102 MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 161
           MEGG NRLLPA A PLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDI TWF 
Sbjct: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFA 60

Query: 162 QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 221
           QNKE LYIDDLE ILDEA+LSLNTQVDDGSIEEVAERLI MHEEC+D NFSSIE+LRQSP
Sbjct: 61  QNKEQLYIDDLETILDEAMLSLNTQVDDGSIEEVAERLIFMHEECVDRNFSSIERLRQSP 120

Query: 222 LPQVARSHVSQVMSDDDEEEDEEEGGDVVVGNGRRDMMVDATQP---RPVN-QPTPEATA 281
            PQVA +HV+Q  SDDD+++D EE  DV     R DMMVDA QP   RPVN Q  PEATA
Sbjct: 121 RPQVAHAHVNQAASDDDDDDDVEE--DV----NRNDMMVDAVQPAQSRPVNHQLNPEATA 180

Query: 282 EAEDGWVQVTSRRSXTTQ 295
           EAEDGWVQVTSRR+  T+
Sbjct: 181 EAEDGWVQVTSRRNRGTR 192

[Close]

BLAST of Cp4.1LG06g04320 vs. TAIR 10
Match: AT5G27990.1 (Pre-rRNA-processing protein TSR2, conserved region )

HSP 1 Score: 125.6 bits (314), Expect = 7.4e-29
Identity = 74/187 (39.57%), Postives = 114/187 (60.96%), Query Frame = 0


Query: 106 ENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFTQNKE 165
           +N  L   A  + +EGIGL+L RW+A++ AVEN WGGRDS+ K     + +  +F Q+K+
Sbjct: 3   QNATLTVEARDILKEGIGLILWRWTAMRAAVENGWGGRDSQAKANETVATVFDFFIQSKD 62

Query: 166 PLY-IDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSPLPQ 225
           P+  I+ L  +LD+ L  LNT  +DGS++EVA  L+ ++E+C +GN+  +E+LR +   Q
Sbjct: 63  PVKDIEKLGDLLDKGLDELNTTAEDGSVDEVANLLVDLYEDCCNGNYEMLEELR-ATYSQ 122

Query: 226 VARSHVSQVMSDDDEEEDEEEGGDVVVGNGRRDMMVDATQPRPVNQPTPEATAEAEDGWV 285
            + S V +V + DDEE D+E+           DMMVDA+  +    P  E    A+DGW 
Sbjct: 123 TSAS-VVKVSNGDDEESDDEDDDQTT------DMMVDASNQKQEAMPVDEPV--ADDGWT 179

Query: 286 QVTSRRS 292
            V+SR++
Sbjct: 183 VVSSRKN 179

[Close]

BLAST of Cp4.1LG06g04320 vs. TAIR 10
Match: AT3G22510.1 (Pre-rRNA-processing protein TSR2, conserved region )

HSP 1 Score: 86.7 bits (213), Expect = 3.8e-17
Identity = 43/94 (45.74%), Postives = 68/94 (72.34%), Query Frame = 0


Query: 117 LFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFTQNKEPLYIDDLEMIL 176
           + Q  IG +LSRW  LQ+AV+N+WGG DS +K + L  ++    +Q+   + ++++E +L
Sbjct: 30  VLQRDIGELLSRWGGLQMAVKNQWGGHDSLKKSQELAHNLFHLISQS-NVITVEEIENLL 89

Query: 177 DEA-LLSLNTQVDDGSIEEVAERLIVMHEECLDG 210
            E+ LLS NT+++DGSIEEVAE+L+++HEE L G
Sbjct: 90  HESLLLSFNTEIEDGSIEEVAEQLMILHEEHLRG 122

The following BLAST results are available for this feature:

BLAST of Cp4.1LG06g04320 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3KRG3	2.3e-11	29.03	Pre-rRNA-processing protein TSR2 homolog OS=Danio rerio OX=7955 GN=tsr2 PE=2 SV=...	[more]
Q3KPN2	1.5e-10	31.15	Pre-rRNA-processing protein TSR2 homolog OS=Xenopus laevis OX=8355 GN=tsr2 PE=2 ...	[more]
Q3T090	7.0e-08	26.52	Pre-rRNA-processing protein TSR2 homolog OS=Bos taurus OX=9913 GN=TSR2 PE=2 SV=1	[more]
Q8C8T8	4.5e-07	25.27	Pre-rRNA-processing protein TSR2 homolog OS=Mus musculus OX=10090 GN=Tsr2 PE=1 S...	[more]
Q969E8	1.1e-05	38.10	Pre-rRNA-processing protein TSR2 homolog OS=Homo sapiens OX=9606 GN=TSR2 PE=1 SV...	[more]

BLAST of Cp4.1LG06g04320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023534881.1	1.36e-128	98.45	pre-rRNA-processing protein TSR2 homolog isoform X1 [Cucurbita pepo subsp. pepo]...	[more]
XP_022936382.1	3.71e-126	96.91	pre-rRNA-processing protein TSR2 homolog [Cucurbita moschata]	[more]
KAG7024555.1	3.04e-121	94.42	Pre-rRNA-processing protein TSR2-like protein [Cucurbita argyrosperma subsp. arg...	[more]
XP_022975934.1	3.75e-121	95.36	pre-rRNA-processing protein TSR2 homolog [Cucurbita maxima]	[more]
KAG6591676.1	2.50e-115	93.78	Pre-rRNA-processing protein TSR2-like protein, partial [Cucurbita argyrosperma s...	[more]

BLAST of Cp4.1LG06g04320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F8A7	1.80e-126	96.91	pre-rRNA-processing protein TSR2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1IM14	1.82e-121	95.36	pre-rRNA-processing protein TSR2 homolog OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]
A0A6J1J400	6.09e-96	79.80	pre-rRNA-processing protein TSR2 homolog OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1FPH6	1.18e-95	78.89	pre-rRNA-processing protein TSR2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A5D3E598	9.68e-95	79.29	Pre-rRNA-processing protein TSR2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]

BLAST of Cp4.1LG06g04320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27990.1	7.4e-29	39.57	Pre-rRNA-processing protein TSR2, conserved region	[more]
AT3G22510.1	3.8e-17	45.74	Pre-rRNA-processing protein TSR2, conserved region	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019398	Pre-rRNA-processing protein TSR2	PFAM	PF10273	WGG	coord: 17..93 e-value: 2.7E-19 score: 69.5 coord: 118..197 e-value: 3.1E-21 score: 75.7
IPR019398	Pre-rRNA-processing protein TSR2	PANTHER	PTHR21250	UNCHARACTERIZED	coord: 14..93
IPR019398	Pre-rRNA-processing protein TSR2	PANTHER	PTHR21250	UNCHARACTERIZED	coord: 114..293
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 301..319
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 285..300
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 225..319
None	No IPR available	PANTHER	PTHR21250:SF4	PRE-RRNA-PROCESSING PROTEIN TSR2, MOTIF PROTEIN	coord: 14..93
None	No IPR available	PANTHER	PTHR21250:SF4	PRE-RRNA-PROCESSING PROTEIN TSR2, MOTIF PROTEIN	coord: 114..293

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG06g04320.1	Cp4.1LG06g04320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
cellular_component	GO:0005634	nucleus