Cp4.1LG06g03420 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG06g03420
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	ethylene-responsive transcription factor SHINE 2-like
Location	Cp4.1LG06: 1904800 .. 1905918 (+)
RNA-Seq Expression	Cp4.1LG06g03420
Synteny	Cp4.1LG06g03420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTATTCAAGGAAGTTCAGAGGAGTCAGGCAGCGGCAGTGGGGCTCTTGGGTGTCAGAAATCCGCCACCCATTGCTGTAAATTCACTCTTACATTACGTTGTTTGTTCTTTTGCTATAAATATATGCGCCATTGGTTGGGTTTCTTGGTTCGATTGTCCTCTGTTTCCTCCATTTTCTGTCTGCTGCCCATAACCTGTTTGATGATTTGTCTGAAAGAAACTGAACTCCTTTGGTGGCGTATGTTTTTGAAAACTGGTTTACTGCATTATTGTGGTATGTTTGTGAACAATTTCTTGTGTTTATTGGTTAAAAATGCTGTGAAAACCCCCCCTTTTTTTGGTGCCCATAAGGTGTTTGTTGATATGCCTGAAAGAATCTGGGTGGCTATGGCATGCATATTTCTGTAGATTGGTGAACTACATTTTCCTCTGCTGTAAATGTATGCATTGATTGTGTTTTTGTTCAGAAAAAAAGCTCTGAGAAATGGAAACCCACCATTGTTGTTCCTTAAACGAAGAAGCTAGCCGGCTATGGCCATTGACCACGCTCATTTCTGCTATACATTACACCTTGAGCCCACATTCTTATATGTTTCATGTGTTAATTTCTTTGTAGGAAGAGAAGGGTGTGGCTGGGGACATTCGACACAGCAGAGGATGCAGCACGAGCGTATGATCAAGCAGCCATCTTAATGAACGGCCAAAACGCCAAGACCAATTTCCCTGCATCAAAAGACCAATCTACAGAAGCCAGCCATGGCCATGGGCACGGATCTTCTCCAATGACCCCAAAAGCACTCTCAGAGCTACTCAGCACAAAGCTCAGAAAGTGCTGCAAGAACCCATCTCCCTCCTTGACATGCCTGCGGCTCGACAGTGACAACGCCCACATCGGTGTCTGGCAGAAGCGCGCAGGCACTCGAGCCACCTCCAATTGGGTCATGAGGATTGAGCTAGGGAAGAAGGAGATACCATCCCCGTTGCCATCGCCCGAATCAACGAGCCAGGAACCCGATGCCCATCGGAACGGAATCGATGAAGAAGACAGAATTGCAATGCAAATGATTGAAGAGTTACTCAATTGGAACTGCCCTCTTCCTTCAATTTCAAGCTAA

mRNA sequence

ATGGTTTATTCAAGGAAGTTCAGAGGAGTCAGGCAGCGGCAGTGGGGCTCTTGGGTGTCAGAAATCCGCCACCCATTGCTGAAGAGAAGGGTGTGGCTGGGGACATTCGACACAGCAGAGGATGCAGCACGAGCGTATGATCAAGCAGCCATCTTAATGAACGGCCAAAACGCCAAGACCAATTTCCCTGCATCAAAAGACCAATCTACAGAAGCCAGCCATGGCCATGGGCACGGATCTTCTCCAATGACCCCAAAAGCACTCTCAGAGCTACTCAGCACAAAGCTCAGAAAGTGCTGCAAGAACCCATCTCCCTCCTTGACATGCCTGCGGCTCGACAGTGACAACGCCCACATCGGTGTCTGGCAGAAGCGCGCAGGCACTCGAGCCACCTCCAATTGGGTCATGAGGATTGAGCTAGGGAAGAAGGAGATACCATCCCCGTTGCCATCGCCCGAATCAACGAGCCAGGAACCCGATGCCCATCGGAACGGAATCGATGAAGAAGACAGAATTGCAATGCAAATGATTGAAGAGTTACTCAATTGGAACTGCCCTCTTCCTTCAATTTCAAGCTAA

Coding sequence (CDS)

ATGGTTTATTCAAGGAAGTTCAGAGGAGTCAGGCAGCGGCAGTGGGGCTCTTGGGTGTCAGAAATCCGCCACCCATTGCTGAAGAGAAGGGTGTGGCTGGGGACATTCGACACAGCAGAGGATGCAGCACGAGCGTATGATCAAGCAGCCATCTTAATGAACGGCCAAAACGCCAAGACCAATTTCCCTGCATCAAAAGACCAATCTACAGAAGCCAGCCATGGCCATGGGCACGGATCTTCTCCAATGACCCCAAAAGCACTCTCAGAGCTACTCAGCACAAAGCTCAGAAAGTGCTGCAAGAACCCATCTCCCTCCTTGACATGCCTGCGGCTCGACAGTGACAACGCCCACATCGGTGTCTGGCAGAAGCGCGCAGGCACTCGAGCCACCTCCAATTGGGTCATGAGGATTGAGCTAGGGAAGAAGGAGATACCATCCCCGTTGCCATCGCCCGAATCAACGAGCCAGGAACCCGATGCCCATCGGAACGGAATCGATGAAGAAGACAGAATTGCAATGCAAATGATTGAAGAGTTACTCAATTGGAACTGCCCTCTTCCTTCAATTTCAAGCTAA

Protein sequence

MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKTNFPASKDQSTEASHGHGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVWQKRAGTRATSNWVMRIELGKKEIPSPLPSPESTSQEPDAHRNGIDEEDRIAMQMIEELLNWNCPLPSISS

Homology

[Close]

BLAST of Cp4.1LG06g03420 vs. ExPASy Swiss-Prot
Match: Q3E958 (Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana OX=3702 GN=SHN3 PE=2 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 2.8e-60
Identity = 116/186 (62.37%), Postives = 143/186 (76.88%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MV+S+KFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAE AARAYDQAA+LMNGQ+AKT
Sbjct: 1   MVHSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKT 60

Query: 61  NFPASKDQSTEASHGHGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIG 120
           NFP  K   +  S+     S+  +PK+LSELL+ KLRK CK+ +P LTCLRLD+D++HIG
Sbjct: 61  NFPVIK---SNGSNSLEINSALRSPKSLSELLNAKLRKNCKDQTPYLTCLRLDNDSSHIG 120

Query: 121 VWQKRAGTRATSNWVMRIELGKKEIPSPLPSPESTSQEPDAHRNGIDEEDRIAMQMIEEL 180
           VWQKRAG++ + NWV  +ELG K   +  P  +  + +       + E+D++AMQMIEEL
Sbjct: 121 VWQKRAGSKTSPNWVKLVELGDK--VNARPGGDIETNKMKVRNEDVQEDDQMAMQMIEEL 180

Query: 181 LNWNCP 187
           LNW CP
Sbjct: 181 LNWTCP 181

[Close]

BLAST of Cp4.1LG06g03420 vs. ExPASy Swiss-Prot
Match: Q9LFN7 (Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana OX=3702 GN=SHN2 PE=2 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 4.7e-60
Identity = 118/190 (62.11%), Postives = 146/190 (76.84%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MV+SRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTF+TAE AARAYDQAA+LMNGQNAKT
Sbjct: 1   MVHSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLMNGQNAKT 60

Query: 61  NFPASKDQSTEASHGHGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIG 120
           NFP  K +   + H     S  M+PK+LSELL+ KLRK CK+ +PSLTCLRLD+D++HIG
Sbjct: 61  NFPVVKSEE-GSDHVKDVNSPLMSPKSLSELLNAKLRKSCKDLTPSLTCLRLDTDSSHIG 120

Query: 121 VWQKRAGTRATSNWVMRIELGKKEIPSPLP------SPESTSQEPDAHRNGIDEEDRIAM 180
           VWQKRAG++ +  WVMR+ELG     S +       + ++  +E +     I +ED++AM
Sbjct: 121 VWQKRAGSKTSPTWVMRLELGNVVNESAVDLGLTTMNKQNVEKEEEEEEAIISDEDQLAM 180

Query: 181 QMIEELLNWN 185
           +MIEELLNW+
Sbjct: 181 EMIEELLNWS 189

[Close]

BLAST of Cp4.1LG06g03420 vs. ExPASy Swiss-Prot
Match: Q9XI33 (Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana OX=3702 GN=WIN1 PE=2 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 2.4e-56
Identity = 110/199 (55.28%), Postives = 145/199 (72.86%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MV ++KFRGVRQR WGSWV+EIRHPLLKRR+WLGTF+TAE+AARAYD+AA+LM+G+NAKT
Sbjct: 1   MVQTKKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKT 60

Query: 61  NFPASKDQSTEASHG------HGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDS 120
           NFP + + + E S G          SS  +  +LS +LS KLRKCCK+PSPSLTCLRLD+
Sbjct: 61  NFPLNNNNTGETSEGKTDISASSTMSSSTSSSSLSSILSAKLRKCCKSPSPSLTCLRLDT 120

Query: 121 DNAHIGVWQKRAGTRATSNWVMRIELG---------KKEIPSPLPSPESTSQEPDAHRNG 180
            ++HIGVWQKRAG+++ S+WVM +ELG          K     + +P +  +   +    
Sbjct: 121 ASSHIGVWQKRAGSKSDSSWVMTVELGPASSSQETTSKASQDAILAPTTEVEIGGSREEV 180

Query: 181 IDEEDRIAMQMIEELLNWN 185
           +DEE+++A+QMIEELLN N
Sbjct: 181 LDEEEKVALQMIEELLNTN 199

[Close]

BLAST of Cp4.1LG06g03420 vs. ExPASy Swiss-Prot
Match: Q94AW5 (Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana OX=3702 GN=ERF003 PE=1 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.0e-22
Identity = 56/95 (58.95%), Postives = 66/95 (69.47%), Query Frame = 0


Query: 5   RKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKTNFPA 64
           ++FRGVRQR WGSWVSEIRHPLLK R+WLGTF+TAEDAARAYD+AA LM G  A+TNFP 
Sbjct: 6   QRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPY 65

Query: 65  SKDQSTEASHGHGHGSSPMTPKALSELLSTKLRKC 100
           + +    +S            K LS  L+ KL KC
Sbjct: 66  NPNAIPTSS-----------SKLLSATLTAKLHKC 89

[Close]

BLAST of Cp4.1LG06g03420 vs. ExPASy Swiss-Prot
Match: P16146 (Protein PPLZ02 OS=Lupinus polyphyllus OX=3874 GN=PPLZ02 PE=2 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.4e-19
Identity = 50/95 (52.63%), Postives = 63/95 (66.32%), Query Frame = 0


Query: 5   RKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKTNFPA 64
           +++RG RQR WGSWVSEIRH +LK R+W GTF++AEDAARAYD+AA LM G  A+TNFP 
Sbjct: 6   QRYRGFRQRHWGSWVSEIRHSILKTRIWQGTFESAEDAARAYDEAARLMCGTRARTNFPY 65

Query: 65  SKDQSTEASHGHGHGSSPMTPKALSELLSTKLRKC 100
           + + S  +S            K LS  L  KL +C
Sbjct: 66  NPNASQSSS-----------SKLLSATLIAKLHRC 89

[Close]

BLAST of Cp4.1LG06g03420 vs. NCBI nr
Match: XP_023536494.1 (ethylene-responsive transcription factor SHINE 2 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023536496.1 ethylene-responsive transcription factor SHINE 2 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023536497.1 ethylene-responsive transcription factor SHINE 2 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023536498.1 ethylene-responsive transcription factor SHINE 2 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 395 bits (1014), Expect = 9.55e-139
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT
Sbjct: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60

Query: 61  NFPASKDQSTEASHGHGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIG 120
           NFPASKDQSTEASHGHGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIG
Sbjct: 61  NFPASKDQSTEASHGHGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIG 120

Query: 121 VWQKRAGTRATSNWVMRIELGKKEIPSPLPSPESTSQEPDAHRNGIDEEDRIAMQMIEEL 180
           VWQKRAGTRATSNWVMRIELGKKEIPSPLPSPESTSQEPDAHRNGIDEEDRIAMQMIEEL
Sbjct: 121 VWQKRAGTRATSNWVMRIELGKKEIPSPLPSPESTSQEPDAHRNGIDEEDRIAMQMIEEL 180

Query: 181 LNWNCPLPSISS 192
           LNWNCPLPSISS
Sbjct: 181 LNWNCPLPSISS 192

[Close]

BLAST of Cp4.1LG06g03420 vs. NCBI nr
Match: XP_023536493.1 (ethylene-responsive transcription factor SHINE 2 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 395 bits (1014), Expect = 1.14e-138
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT
Sbjct: 6   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 65

Query: 61  NFPASKDQSTEASHGHGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIG 120
           NFPASKDQSTEASHGHGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIG
Sbjct: 66  NFPASKDQSTEASHGHGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIG 125

Query: 121 VWQKRAGTRATSNWVMRIELGKKEIPSPLPSPESTSQEPDAHRNGIDEEDRIAMQMIEEL 180
           VWQKRAGTRATSNWVMRIELGKKEIPSPLPSPESTSQEPDAHRNGIDEEDRIAMQMIEEL
Sbjct: 126 VWQKRAGTRATSNWVMRIELGKKEIPSPLPSPESTSQEPDAHRNGIDEEDRIAMQMIEEL 185

Query: 181 LNWNCPLPSISS 192
           LNWNCPLPSISS
Sbjct: 186 LNWNCPLPSISS 197

[Close]

BLAST of Cp4.1LG06g03420 vs. NCBI nr
Match: KAG7024462.1 (Ethylene-responsive transcription factor SHINE 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 390 bits (1002), Expect = 6.46e-137
Identity = 189/192 (98.44%), Postives = 190/192 (98.96%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT
Sbjct: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60

Query: 61  NFPASKDQSTEASHGHGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIG 120
           NFPASKDQS EASHGHGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIG
Sbjct: 61  NFPASKDQSAEASHGHGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIG 120

Query: 121 VWQKRAGTRATSNWVMRIELGKKEIPSPLPSPESTSQEPDAHRNGIDEEDRIAMQMIEEL 180
           VWQKRAGTRATSNWVMRIELGKKEIPSPLPSPESTS+EPD HRNGIDEEDRIAMQMIEEL
Sbjct: 121 VWQKRAGTRATSNWVMRIELGKKEIPSPLPSPESTSEEPDGHRNGIDEEDRIAMQMIEEL 180

Query: 181 LNWNCPLPSISS 192
           LNWNCPLPSISS
Sbjct: 181 LNWNCPLPSISS 192

[Close]

BLAST of Cp4.1LG06g03420 vs. NCBI nr
Match: XP_022976202.1 (ethylene-responsive transcription factor SHINE 2 isoform X2 [Cucurbita maxima] >XP_022976203.1 ethylene-responsive transcription factor SHINE 2 isoform X2 [Cucurbita maxima] >XP_022976204.1 ethylene-responsive transcription factor SHINE 2 isoform X2 [Cucurbita maxima] >XP_022976205.1 ethylene-responsive transcription factor SHINE 2 isoform X2 [Cucurbita maxima])

HSP 1 Score: 388 bits (997), Expect = 3.74e-136
Identity = 189/192 (98.44%), Postives = 189/192 (98.44%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT
Sbjct: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60

Query: 61  NFPASKDQSTEASHGHGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIG 120
           NFPASKDQS EASHGHGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIG
Sbjct: 61  NFPASKDQSAEASHGHGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIG 120

Query: 121 VWQKRAGTRATSNWVMRIELGKKEIPSPLPSPESTSQEPDAHRNGIDEEDRIAMQMIEEL 180
           VWQKRAGTRATSNWVMRIELGKKEIPSPLPSPESTSQE D HRNGIDEEDRIAMQMIEEL
Sbjct: 121 VWQKRAGTRATSNWVMRIELGKKEIPSPLPSPESTSQEADGHRNGIDEEDRIAMQMIEEL 180

Query: 181 LNWNCPLPSISS 192
           LNWNCPLPSISS
Sbjct: 181 LNWNCPLPSISS 192

[Close]

BLAST of Cp4.1LG06g03420 vs. NCBI nr
Match: XP_022976201.1 (ethylene-responsive transcription factor SHINE 2 isoform X1 [Cucurbita maxima])

HSP 1 Score: 388 bits (997), Expect = 4.47e-136
Identity = 189/192 (98.44%), Postives = 189/192 (98.44%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT
Sbjct: 6   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 65

Query: 61  NFPASKDQSTEASHGHGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIG 120
           NFPASKDQS EASHGHGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIG
Sbjct: 66  NFPASKDQSAEASHGHGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIG 125

Query: 121 VWQKRAGTRATSNWVMRIELGKKEIPSPLPSPESTSQEPDAHRNGIDEEDRIAMQMIEEL 180
           VWQKRAGTRATSNWVMRIELGKKEIPSPLPSPESTSQE D HRNGIDEEDRIAMQMIEEL
Sbjct: 126 VWQKRAGTRATSNWVMRIELGKKEIPSPLPSPESTSQEADGHRNGIDEEDRIAMQMIEEL 185

Query: 181 LNWNCPLPSISS 192
           LNWNCPLPSISS
Sbjct: 186 LNWNCPLPSISS 197

[Close]

BLAST of Cp4.1LG06g03420 vs. ExPASy TrEMBL
Match: A0A6J1IIU8 (ethylene-responsive transcription factor SHINE 2 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111476664 PE=4 SV=1)

HSP 1 Score: 388 bits (997), Expect = 1.81e-136
Identity = 189/192 (98.44%), Postives = 189/192 (98.44%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT
Sbjct: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60

Query: 61  NFPASKDQSTEASHGHGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIG 120
           NFPASKDQS EASHGHGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIG
Sbjct: 61  NFPASKDQSAEASHGHGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIG 120

Query: 121 VWQKRAGTRATSNWVMRIELGKKEIPSPLPSPESTSQEPDAHRNGIDEEDRIAMQMIEEL 180
           VWQKRAGTRATSNWVMRIELGKKEIPSPLPSPESTSQE D HRNGIDEEDRIAMQMIEEL
Sbjct: 121 VWQKRAGTRATSNWVMRIELGKKEIPSPLPSPESTSQEADGHRNGIDEEDRIAMQMIEEL 180

Query: 181 LNWNCPLPSISS 192
           LNWNCPLPSISS
Sbjct: 181 LNWNCPLPSISS 192

[Close]

BLAST of Cp4.1LG06g03420 vs. ExPASy TrEMBL
Match: A0A6J1IGA2 (ethylene-responsive transcription factor SHINE 2 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111476664 PE=4 SV=1)

HSP 1 Score: 388 bits (997), Expect = 2.16e-136
Identity = 189/192 (98.44%), Postives = 189/192 (98.44%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT
Sbjct: 6   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 65

Query: 61  NFPASKDQSTEASHGHGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIG 120
           NFPASKDQS EASHGHGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIG
Sbjct: 66  NFPASKDQSAEASHGHGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIG 125

Query: 121 VWQKRAGTRATSNWVMRIELGKKEIPSPLPSPESTSQEPDAHRNGIDEEDRIAMQMIEEL 180
           VWQKRAGTRATSNWVMRIELGKKEIPSPLPSPESTSQE D HRNGIDEEDRIAMQMIEEL
Sbjct: 126 VWQKRAGTRATSNWVMRIELGKKEIPSPLPSPESTSQEADGHRNGIDEEDRIAMQMIEEL 185

Query: 181 LNWNCPLPSISS 192
           LNWNCPLPSISS
Sbjct: 186 LNWNCPLPSISS 197

[Close]

BLAST of Cp4.1LG06g03420 vs. ExPASy TrEMBL
Match: A0A6J1FE03 (ethylene-responsive transcription factor SHINE 2 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111443124 PE=4 SV=1)

HSP 1 Score: 381 bits (979), Expect = 9.37e-134
Identity = 188/192 (97.92%), Postives = 188/192 (97.92%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT
Sbjct: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60

Query: 61  NFPASKDQSTEASHGHGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIG 120
           NFPASKDQS EASH  GHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIG
Sbjct: 61  NFPASKDQSAEASH--GHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIG 120

Query: 121 VWQKRAGTRATSNWVMRIELGKKEIPSPLPSPESTSQEPDAHRNGIDEEDRIAMQMIEEL 180
           VWQKRAGTRATSNWVMRIELGKKEIPSPLPSPESTSQEPD HRNGIDEEDRIAMQMIEEL
Sbjct: 121 VWQKRAGTRATSNWVMRIELGKKEIPSPLPSPESTSQEPDGHRNGIDEEDRIAMQMIEEL 180

Query: 181 LNWNCPLPSISS 192
           LNWNCPLPSISS
Sbjct: 181 LNWNCPLPSISS 190

[Close]

BLAST of Cp4.1LG06g03420 vs. ExPASy TrEMBL
Match: A0A6J1F8L5 (ethylene-responsive transcription factor SHINE 2 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443124 PE=4 SV=1)

HSP 1 Score: 381 bits (979), Expect = 1.12e-133
Identity = 188/192 (97.92%), Postives = 188/192 (97.92%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT
Sbjct: 6   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 65

Query: 61  NFPASKDQSTEASHGHGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIG 120
           NFPASKDQS EASH  GHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIG
Sbjct: 66  NFPASKDQSAEASH--GHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIG 125

Query: 121 VWQKRAGTRATSNWVMRIELGKKEIPSPLPSPESTSQEPDAHRNGIDEEDRIAMQMIEEL 180
           VWQKRAGTRATSNWVMRIELGKKEIPSPLPSPESTSQEPD HRNGIDEEDRIAMQMIEEL
Sbjct: 126 VWQKRAGTRATSNWVMRIELGKKEIPSPLPSPESTSQEPDGHRNGIDEEDRIAMQMIEEL 185

Query: 181 LNWNCPLPSISS 192
           LNWNCPLPSISS
Sbjct: 186 LNWNCPLPSISS 195

[Close]

BLAST of Cp4.1LG06g03420 vs. ExPASy TrEMBL
Match: A0A0A0LJA8 (AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G878210 PE=4 SV=1)

HSP 1 Score: 344 bits (883), Expect = 4.68e-119
Identity = 176/200 (88.00%), Postives = 179/200 (89.50%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT
Sbjct: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60

Query: 61  NFPASKDQSTEASHGHGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIG 120
           NFPASKD S EASH  GHGSSPM+PKALSELLSTKLRKCCKNPSPSLTCLRLD DNAHIG
Sbjct: 61  NFPASKDHSEEASH--GHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDCDNAHIG 120

Query: 121 VWQKRAGTRATSNWVMRIELGKKEIPSPLPSPESTSQEPDA--------HRNGIDEEDRI 180
           VWQKRAGTRATSNWVMRIELGKKE+PSP    ESTSQE D         H+N IDEEDRI
Sbjct: 121 VWQKRAGTRATSNWVMRIELGKKEVPSP----ESTSQEADGDGDGDGDDHQNEIDEEDRI 180

Query: 181 AMQMIEELLNWNCPLPSISS 192
           AMQMIEELLNWNCPLPS SS
Sbjct: 181 AMQMIEELLNWNCPLPSTSS 194

[Close]

BLAST of Cp4.1LG06g03420 vs. TAIR 10
Match: AT5G25390.2 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 233.0 bits (593), Expect = 2.0e-61
Identity = 116/186 (62.37%), Postives = 143/186 (76.88%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MV+S+KFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAE AARAYDQAA+LMNGQ+AKT
Sbjct: 1   MVHSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKT 60

Query: 61  NFPASKDQSTEASHGHGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIG 120
           NFP  K   +  S+     S+  +PK+LSELL+ KLRK CK+ +P LTCLRLD+D++HIG
Sbjct: 61  NFPVIK---SNGSNSLEINSALRSPKSLSELLNAKLRKNCKDQTPYLTCLRLDNDSSHIG 120

Query: 121 VWQKRAGTRATSNWVMRIELGKKEIPSPLPSPESTSQEPDAHRNGIDEEDRIAMQMIEEL 180
           VWQKRAG++ + NWV  +ELG K   +  P  +  + +       + E+D++AMQMIEEL
Sbjct: 121 VWQKRAGSKTSPNWVKLVELGDK--VNARPGGDIETNKMKVRNEDVQEDDQMAMQMIEEL 180

Query: 181 LNWNCP 187
           LNW CP
Sbjct: 181 LNWTCP 181

[Close]

BLAST of Cp4.1LG06g03420 vs. TAIR 10
Match: AT5G11190.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 232.3 bits (591), Expect = 3.4e-61
Identity = 118/190 (62.11%), Postives = 146/190 (76.84%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MV+SRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTF+TAE AARAYDQAA+LMNGQNAKT
Sbjct: 1   MVHSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLMNGQNAKT 60

Query: 61  NFPASKDQSTEASHGHGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIG 120
           NFP  K +   + H     S  M+PK+LSELL+ KLRK CK+ +PSLTCLRLD+D++HIG
Sbjct: 61  NFPVVKSEE-GSDHVKDVNSPLMSPKSLSELLNAKLRKSCKDLTPSLTCLRLDTDSSHIG 120

Query: 121 VWQKRAGTRATSNWVMRIELGKKEIPSPLP------SPESTSQEPDAHRNGIDEEDRIAM 180
           VWQKRAG++ +  WVMR+ELG     S +       + ++  +E +     I +ED++AM
Sbjct: 121 VWQKRAGSKTSPTWVMRLELGNVVNESAVDLGLTTMNKQNVEKEEEEEEAIISDEDQLAM 180

Query: 181 QMIEELLNWN 185
           +MIEELLNW+
Sbjct: 181 EMIEELLNWS 189

[Close]

BLAST of Cp4.1LG06g03420 vs. TAIR 10
Match: AT5G25390.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 222.2 bits (565), Expect = 3.5e-58
Identity = 113/186 (60.75%), Postives = 140/186 (75.27%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MV+S+KFRGVRQRQWGSWVSEIRHPLL   VWLGTFDTAE AARAYDQAA+LMNGQ+AKT
Sbjct: 1   MVHSKKFRGVRQRQWGSWVSEIRHPLL---VWLGTFDTAETAARAYDQAAVLMNGQSAKT 60

Query: 61  NFPASKDQSTEASHGHGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIG 120
           NFP  K   +  S+     S+  +PK+LSELL+ KLRK CK+ +P LTCLRLD+D++HIG
Sbjct: 61  NFPVIK---SNGSNSLEINSALRSPKSLSELLNAKLRKNCKDQTPYLTCLRLDNDSSHIG 120

Query: 121 VWQKRAGTRATSNWVMRIELGKKEIPSPLPSPESTSQEPDAHRNGIDEEDRIAMQMIEEL 180
           VWQKRAG++ + NWV  +ELG K   +  P  +  + +       + E+D++AMQMIEEL
Sbjct: 121 VWQKRAGSKTSPNWVKLVELGDK--VNARPGGDIETNKMKVRNEDVQEDDQMAMQMIEEL 178

Query: 181 LNWNCP 187
           LNW CP
Sbjct: 181 LNWTCP 178

[Close]

BLAST of Cp4.1LG06g03420 vs. TAIR 10
Match: AT1G15360.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 219.9 bits (559), Expect = 1.7e-57
Identity = 110/199 (55.28%), Postives = 145/199 (72.86%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MV ++KFRGVRQR WGSWV+EIRHPLLKRR+WLGTF+TAE+AARAYD+AA+LM+G+NAKT
Sbjct: 1   MVQTKKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKT 60

Query: 61  NFPASKDQSTEASHG------HGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDS 120
           NFP + + + E S G          SS  +  +LS +LS KLRKCCK+PSPSLTCLRLD+
Sbjct: 61  NFPLNNNNTGETSEGKTDISASSTMSSSTSSSSLSSILSAKLRKCCKSPSPSLTCLRLDT 120

Query: 121 DNAHIGVWQKRAGTRATSNWVMRIELG---------KKEIPSPLPSPESTSQEPDAHRNG 180
            ++HIGVWQKRAG+++ S+WVM +ELG          K     + +P +  +   +    
Sbjct: 121 ASSHIGVWQKRAGSKSDSSWVMTVELGPASSSQETTSKASQDAILAPTTEVEIGGSREEV 180

Query: 181 IDEEDRIAMQMIEELLNWN 185
           +DEE+++A+QMIEELLN N
Sbjct: 181 LDEEEKVALQMIEELLNTN 199

[Close]

BLAST of Cp4.1LG06g03420 vs. TAIR 10
Match: AT5G25190.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 108.2 bits (269), Expect = 7.3e-24
Identity = 56/95 (58.95%), Postives = 66/95 (69.47%), Query Frame = 0


Query: 5   RKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKTNFPA 64
           ++FRGVRQR WGSWVSEIRHPLLK R+WLGTF+TAEDAARAYD+AA LM G  A+TNFP 
Sbjct: 6   QRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPY 65

Query: 65  SKDQSTEASHGHGHGSSPMTPKALSELLSTKLRKC 100
           + +    +S            K LS  L+ KL KC
Sbjct: 66  NPNAIPTSS-----------SKLLSATLTAKLHKC 89

The following BLAST results are available for this feature:

BLAST of Cp4.1LG06g03420 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3E958	2.8e-60	62.37	Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana OX=3702...	[more]
Q9LFN7	4.7e-60	62.11	Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana OX=3702...	[more]
Q9XI33	2.4e-56	55.28	Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q94AW5	1.0e-22	58.95	Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana OX=3702 ...	[more]
P16146	1.4e-19	52.63	Protein PPLZ02 OS=Lupinus polyphyllus OX=3874 GN=PPLZ02 PE=2 SV=1	[more]

BLAST of Cp4.1LG06g03420 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023536494.1	9.55e-139	100.00	ethylene-responsive transcription factor SHINE 2 isoform X2 [Cucurbita pepo subs...	[more]
XP_023536493.1	1.14e-138	100.00	ethylene-responsive transcription factor SHINE 2 isoform X1 [Cucurbita pepo subs...	[more]
KAG7024462.1	6.46e-137	98.44	Ethylene-responsive transcription factor SHINE 3, partial [Cucurbita argyrosperm...	[more]
XP_022976202.1	3.74e-136	98.44	ethylene-responsive transcription factor SHINE 2 isoform X2 [Cucurbita maxima] >...	[more]
XP_022976201.1	4.47e-136	98.44	ethylene-responsive transcription factor SHINE 2 isoform X1 [Cucurbita maxima]	[more]

BLAST of Cp4.1LG06g03420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IIU8	1.81e-136	98.44	ethylene-responsive transcription factor SHINE 2 isoform X2 OS=Cucurbita maxima ...	[more]
A0A6J1IGA2	2.16e-136	98.44	ethylene-responsive transcription factor SHINE 2 isoform X1 OS=Cucurbita maxima ...	[more]
A0A6J1FE03	9.37e-134	97.92	ethylene-responsive transcription factor SHINE 2 isoform X2 OS=Cucurbita moschat...	[more]
A0A6J1F8L5	1.12e-133	97.92	ethylene-responsive transcription factor SHINE 2 isoform X1 OS=Cucurbita moschat...	[more]
A0A0A0LJA8	4.68e-119	88.00	AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G878210 PE=...	[more]

BLAST of Cp4.1LG06g03420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G25390.2	2.0e-61	62.37	Integrase-type DNA-binding superfamily protein	[more]
AT5G11190.1	3.4e-61	62.11	Integrase-type DNA-binding superfamily protein	[more]
AT5G25390.1	3.5e-58	60.75	Integrase-type DNA-binding superfamily protein	[more]
AT1G15360.1	1.7e-57	55.28	Integrase-type DNA-binding superfamily protein	[more]
AT5G25190.1	7.3e-24	58.95	Integrase-type DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 7..18 score: 60.91 coord: 29..45 score: 72.19
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 6..69 e-value: 7.4E-40 score: 148.4
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 6..55 e-value: 3.8E-13 score: 49.5
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 6..63 score: 21.904358
IPR001471	AP2/ERF domain	CDD	cd00018	AP2	coord: 6..65 e-value: 1.26215E-34 score: 115.061
IPR036955	AP2/ERF domain superfamily	GENE3D	3.30.730.10	AP2/ERF domain	coord: 5..65 e-value: 4.9E-27 score: 95.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 143..163
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..77
None	No IPR available	PANTHER	PTHR31194:SF13	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2	coord: 1..190
None	No IPR available	PANTHER	PTHR31194	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	coord: 1..190
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 6..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG06g03420.1	Cp4.1LG06g03420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity