Cp4.1LG06g03280 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG06g03280
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG06: 1822661 .. 1825190 (+)
RNA-Seq ExpressionCp4.1LG06g03280
SyntenyCp4.1LG06g03280
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGTATGAATTCCTCCGTTTTGGACGATTTTGAAAACATGTTGAGGAAACTTCTGCATTTCTTGTAATTGTTTGTTGAGGGAAAGAACGGAAAAGTCTGTATAATCGCGAACATAGGAAAAGAAATGATTACGACGTTTTGTCTCGTTAACTCGATGGACTGCCATTCAGCAATTAATGCTTGCACGTCAAGTTTTATGACGTTGATGTAATTAGTAATTTGTTAAATTTTTTGAACATGTGAGCGTCCACTGTTTTGTGATAACTGATCGATTGAGATGTAGACTGATAATTGCTTTATTGGAAGCTTGAAACTAAGTAAGTGTACTAGAAAGGTGATTTATTTAGCAGGTAGTGCTAAAAACAGTGCGTTCATGAAAATTTTGCAAATCAATTTAGTACTCTGAAGAATGCCTGCTATTTACAATTACATGGATTGAGATTAGATTATCTTGAAGGTCAGCCATGGAGTGGAGTTCGATATTGATCTTTTCATATTCATGGGGGGCAAGTGTTAAGCGGTGAATATGGAGGATGAAGCCTGGAACAGGCTGAAATGTAAGTTCTCTACCTAGGATGAAGGCTAGAAGTCTGGAAGGGAAAGCCCACAGAGAACAATATCTGCTAGCGATAGGATTAGGCTGTTACAAACGGTATCAGAGCCAGACACCGTGTGATATGCCAGCGAGGAGGTTGAGCTCCGAAAGGGGTAAACACAAGGCAGTGTGCTAGCAAAGACGCTGGGCCCCAAAGGGGTGGATTGGGGGTCGCATTGGAGAAGGGAACAAGTGCCAGCGAGGACGCTAGACCCCAAAGGGGGGGTGGATTGTGAGATCCCACATCGGTTGGGGAGGAGAACAAACCATTCTTTGTAAGGGTGTGGAAACCTCTCTCTAACATACACATTTTAAAAACCTTGAGTGGAAGCCCAAAGAGGACAATATTTGCTAGTGGTGGGCTTGGGCGTTGCAATGATAGTAAATCTCTCTAGAGGCTCTGGGGCAAATGCCATGAGCTATATGCAGAAATTATGAAAATTCTCTAGTCAGCTGATGTATACGTTGGATGCTACTGTAGTATTGGATTCATGTTGGATTTTTGTTATGTTTGGTATCTGTATAGTATATGTTCATTGTTTCTAACTATGCCCAATGGCCTTCGAATGCCAACCAAAATTATGTTAAATCTTTCTTTCAGATGGAGGAAGTTTGTCTTAACAGCCAGCCTGTCTTTGATTATTGTGACATGTATATGGTGATTGTTCCTTTGTGAACGAAGATGAATCTATGGAAGCACAGTCAAAGAAGAATCTTCCACGGCCAACTGTGGGTTCGGAATATGATTCTTTTGATGAGGCATACGACTTTTATAATGCTTATGCTAAGGCACTGGGCTTTGGTAGCAGAGTCAGCAATTCATGGTTTCGATCTAAGAGAAAAGAGCGACATAGAGCTACACTTATCATTTGCAGGAATGATCTCTATCCATGCATATGAGAGGTTTAAAACACTTTTTTGGTGGATATGTGCATAAATACACATCTTTTAAGACATTTGTTGATAAGTATGATCTTGTCCACCACAGGAAATATTATAAAGAAGCAGTAGCAGATCTAGAGTCGAGAAATTTAAGCGTCGAGTTGAAAAGGAGATGTAAGTTTTGAAATGCAGCTCTCCAAGGTAGCAAGTTTCAATCTGAGGTGGAAGGAATGTACTCTTGTGAGATCTGACATCGGTTGGAGAGGGGAACGAAGCATTCCTTATAAGGGTGTGGAAACCTCTCCCTAGCAGACGCATTTTAAAATCTTGAGACTGACGGGGCGATACGTAACGGGCCAAGGCAGACAATATTTACTAACAGTGAGCTTGGGTTAGTACAACTCTTAATTCAACACGAGGCAGGTGAAAGAAAGGATTGTAGTTGAGGGAAACGGGCCTTATGCATTTCGACACAAACCATGGGGAGCGAACGAAAAGCAGGTTCGTAGTCTGTATCCCGAGAAGGGAGGTAATCCAATCAGAACTTTGTCTCCATGTTACCAAGTAAACATGAAAGAATAAGGTACTGGAAATCATTTGTTGGCATGCAATTACACTGCAGCATTTTGGTATATTAACTGGCCGGCCCCATGTGTTGGATTTTTCCTTGTTGCAGGCTACCTATGGATGATAGCTTTATATGCACAATTCCGTGGAAGTTTAAGCAACTCCTTACCTTACTTGTGAGCTCATATTGGATCTATTATGGTCATCCCATTGAAGTTGAGACCATAAATCCTTGCAGTTGTTTCCACTAAAATTCTCAACGCCCTCAATAGTAGTCTTTGCTCTAGCTTTTAATTGAAGACTTGCTACCCATATAGTATATGGGCCCTCTTATATTCATTATGGTTACGTTGGATATGTGGACTTTATAGTAGATAATGCATGCATATAATTATTTGGTTTATAAATAGTGACACAGTTGTACGTAAGAGTGTATTATAGGTCTCTTAACAAATATGTCAACTATATAGGAGGTGCCCTAC

mRNA sequence

ATGGCTATGGAGGAAGTTTGTCTTAACAGCCAGCCTGTCTTTGATTATTGTGACATGTATATGATGAATCTATGGAAGCACAGTCAAAGAAGAATCTTCCACGGCCAACTGTGGGTTCGGAATATGATTCTTTTGATGAGGCATACGACTTTTATAATGCTTATGCTAAGGCACTGGGCTTTGGTAGCAGAGTCAGCAATTCATGGTTTCGATCTAAGAGAAAAGAGCGACATAGAGCTACACTTATCATTTGCAGGAATGATCTCTATCCATGCATATGAGAGGCTACCTATGGATGATAGCTTTATATGCACAATTCCGTGGAAGTTTAAGCAACTCCTTACCTTACTTGTGAGCTCATATTGGATCTATTATGGTCATCCCATTGAAGTTGAGACCATAAATCCTTGCAGTTGTTTCCACTAAAATTCTCAACGCCCTCAATAGTAGTCTTTGCTCTAGCTTTTAATTGAAGACTTGCTACCCATATAGTATATGGGCCCTCTTATATTCATTATGGTTACGTTGGATATGTGGACTTTATAGTAGATAATGCATGCATATAATTATTTGGTTTATAAATAGTGACACAGTTGTACGTAAGAGTGTATTATAGGTCTCTTAACAAATATGTCAACTATATAGGAGGTGCCCTAC

Coding sequence (CDS)

ATGGCTATGGAGGAAGTTTGTCTTAACAGCCAGCCTGTCTTTGATTATTGTGACATGTATATGATGAATCTATGGAAGCACAGTCAAAGAAGAATCTTCCACGGCCAACTGTGGGTTCGGAATATGATTCTTTTGATGAGGCATACGACTTTTATAATGCTTATGCTAAGGCACTGGGCTTTGGTAGCAGAGTCAGCAATTCATGGTTTCGATCTAAGAGAAAAGAGCGACATAGAGCTACACTTATCATTTGCAGGAATGATCTCTATCCATGCATATGAGAGGCTACCTATGGATGATAGCTTTATATGCACAATTCCGTGGAAGTTTAAGCAACTCCTTACCTTACTTGTGAGCTCATATTGGATCTATTATGGTCATCCCATTGAAGTTGAGACCATAAATCCTTGCAGTTGTTTCCACTAA

Protein sequence

MAMEEVCLNSQPVFDYCDMYMMNLWKHSQRRIFHGQLWVRNMILLMRHTTFIMLMLRHWALVAESAIHGFDLREKSDIELHLSFAGMISIHAYERLPMDDSFICTIPWKFKQLLTLLVSSYWIYYGHPIEVETINPCSCFH
Homology
[Close]
BLAST of Cp4.1LG06g03280 vs. NCBI nr
Match: KAG7024450.1 (hypothetical protein SDJN02_13265 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 241 bits (615), Expect = 7.02e-80
Identity = 115/120 (95.83%), Postives = 116/120 (96.67%), Query Frame = 0 

Query: 22  MNLWKHSQRRIFHGQLWVRNMILLMRHTTFIMLMLRHWALVAESAIHGFDLREKSDIELH 81
           MNLWKHSQRRIFHGQLWVRNMILLMRHTTFIMLMLR+WAL AESAIHGFDLREKSDIELH
Sbjct: 1   MNLWKHSQRRIFHGQLWVRNMILLMRHTTFIMLMLRYWALAAESAIHGFDLREKSDIELH 60

Query: 82  LSFAGMISIHAYERLPMDDSFICTIPWKFKQLLTLLVSSYWIYYGHPIEVETINPCSCFH 141
           LSFAGMISIHAYERLPMDDSFICTIPWKFKQ LTLLVSSYWIYYGHPIEVETINPCS  H
Sbjct: 61  LSFAGMISIHAYERLPMDDSFICTIPWKFKQHLTLLVSSYWIYYGHPIEVETINPCSFSH 120

[Close]
BLAST of Cp4.1LG06g03280 vs. NCBI nr
Match: KAG6591561.1 (hypothetical protein SDJN03_13907, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.0 bits (175), Expect = 5.20e-13
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 0 

Query: 60  ALVAESAIHGFDLREKSDIELHLSFAGMISIHAYER 95
           AL AESAIHGFDLREKSDIELHLSFAGMISIHAYER
Sbjct: 65  ALAAESAIHGFDLREKSDIELHLSFAGMISIHAYER 100

[Close]
BLAST of Cp4.1LG06g03280 vs. ExPASy TrEMBL
Match: A0A0A0LDN7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G876570 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.41e-15
Identity = 47/86 (54.65%), Postives = 56/86 (65.12%), Query Frame = 0 

Query: 6   VCLNSQPVFDYCDMYMMNLW------KHSQRRIFHGQLWVRNMILLMRHTTFIMLMLRHW 65
           V L+   V +   M M+ LW      KHSQ RI H QLWV N+IL MR  TF M MLR W
Sbjct: 24  VSLSLMNVTNMRWMVMIPLWTMTNPGKHSQGRILHFQLWVWNLILSMRLMTFTMFMLRMW 83

Query: 66  ALVAESAIHGFDLREKSDIELHLSFA 85
           AL +ES IHGF LR+K+DIEL+L+ A
Sbjct: 84  ALASESVIHGFVLRKKNDIELNLAAA 109

The following BLAST results are available for this feature:
BLAST of Cp4.1LG06g03280 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG06g03280 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7024450.17.02e-8095.83hypothetical protein SDJN02_13265 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6591561.15.20e-1397.22hypothetical protein SDJN03_13907, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Cp4.1LG06g03280 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LDN72.41e-1554.65Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G876570 PE=4 SV=1[more]
BLAST of Cp4.1LG06g03280 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG06g03280.1Cp4.1LG06g03280.1mRNA