Cp4.1LG06g03220 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG06g03220
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG06: 1758177 .. 1760132 (-)
RNA-Seq ExpressionCp4.1LG06g03220
SyntenyCp4.1LG06g03220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTTCCGGCTTGCGGTACGATTCTTCTTCGTGTACATTGCTGGAATACGATCCTCGACCTATGTAATTACCTATTCGATGTCGTTTTACATTTAGGAATCCGTTTTTGGAATTTCTGAAATTGTTTATTGTGTTCTACTCTCAATGCTTCTTCTTCTTCTCTATATTTTTGTTTGTTTTTGATACTCGCATTGCTTTTCTAGTTAGACATTGTTGTCATATTCAGTACAGTGTTGAAGGATCCTCTACGGTGTCGGAGTTTCCGGCGGTTGAAATAGGTTCTCGTTTGTTTCTTCTTCCTCGCTATTTATGGCGTCTATTTTCCTCTTCTTGATTCGGACTGTGTTCCGGATCGAGGAATCTGTAATACCAGAATGTGACTACCTATTCGATGTCATTTTACATTTAGGAATCCGATTTTGGAATTTCTGAAATTGTTGACTGTGTTCTACTCTCAATGCTTCTTCTTCTCTATATTTTTGTTTGTTTTTTATGCATGATGCTTGAATCAGTAGGTTTTGCTTTACTAAGGTGGAAGAATGGTTTTAGAAGTTTTAAGTGATGGATTGCTACTCGCATTGCTTTTCTAGTTAGACATTGTTGTCATAAGCAGTACAGCGTTGAAGGATCCTCTACGGTGTCGGAGTTTCCGGCGGTTGAAATAGGTTCTCGTTTGTTTCTTCTTCCTCGCTATTTATGGCGTCTATTTTCCTCTTCTTGATTCGGACTGTGTTCCGGATCGAGGAATCTGTAATACCAGAATGTGACTACCTATTCGATGTCACTTTACATTAACGAATCCGTTTTTGGAATTTCTGAAACTTTTGACTGTGTTCTACTCTCAGTGCTTCTTCTCTATATTTTGTTTGTTTTTGATGCTTGATGCTTGAATCGGTAGGTTTTGCTTTTCTGAGGTGAAAGTATGGTTTTAGAAGTTTCAAGTGATGGATTACTACTCGCATTGCTTTTCTAGTTAGACATCGTTGTCATATGCAGTACAGTGTTGAAGGATCCTCTACGGTGTCGGAGTTTCCGGCGGTTGAAATAGGTTCGCGTTTGTTTTTTCTTCCTCGCTATTTATGGCGTCTATTTTCGTCTTCTTGATTCGGACTGTGTTCCGGATCGAGGAATCTGTGATACCAGAATGTGCATTATTGAGAATGATGATTGATCGGCTCCTTCGTATTTGTCTTATGGATAATGTGTTTTCCTTTAGGTATTGAGTAGTGTCTTGTTCGTCTGAAGTTTCTCCCTGTGAATTAGTTGTGGCACTGGAGCTTGGATGCCTCTATTGTCCTCATAGTCCAAGCTTTAGATCTCTTTGGTTCTGTTTTGATATATGTTCAATTTTCTATTTGTATTACTCTCCTCTTATCAAACCGTAGTTAGTGAGTATTATTCATTTTTGTGTATCCAAGTATAGGTTATAAATTAGACATCGATTATCATCTAATCATTAATGATTCAATCTACGACTCTACCATTGTTAAACTTAAAAAACAAGAAGTACTTAGGATTTATATAGGTTAAAAAGATAATTATTAGTACATTTGCACTGTAGCATATAGCCTCACGTTGGTGCACGTAAAATGCGGATTTCTTATATTACTCTCTTCTCTCTTTAATTTGGATTGCAAGGTATTCGTATATGCCCTTTTAGATGGACGGAGGTGATACCCGCCTTCTATGCCCGTGTACTAGCGGCCGATCCACATAGAAGTACGTGCCTTCCTTCAACTTCAAGAGTATATAATATTAGTTTACCTTAGCTGATTCTTTAACAAGTTTGATGTTTGGTTTGTTGGAAATTATCCTATTCTACTCTAGAGTGCCCCTTACCTGATCCTTGGTCCGATTCCAATCATCAAGACATTTCCATTATTTTTAAGTTTTCTCCTGGCTGCAGTCCCCTCAAATAAACTTATTTTATATGTTATCTTTTGTTTCAGCTTAG

mRNA sequence

ATGCCTTCCGGCTTGCGGTACGATTCTTCTTCGTGTACATTGCTGGAATACGATCCTCGACCTATGTTTTGCTTTTCTGAGTACAGTGTTGAAGGATCCTCTACGGTGTCGGAGTTTCCGGCGGTTGAAATAGGTATTCGTATATGCCCTTTTAGATGGACGGAGGTGATACCCGCCTTCTATGCCCGTGTACTAGCGGCCGATCCACATAGAACTTAG

Coding sequence (CDS)

ATGCCTTCCGGCTTGCGGTACGATTCTTCTTCGTGTACATTGCTGGAATACGATCCTCGACCTATGTTTTGCTTTTCTGAGTACAGTGTTGAAGGATCCTCTACGGTGTCGGAGTTTCCGGCGGTTGAAATAGGTATTCGTATATGCCCTTTTAGATGGACGGAGGTGATACCCGCCTTCTATGCCCGTGTACTAGCGGCCGATCCACATAGAACTTAG

Protein sequence

MPSGLRYDSSSCTLLEYDPRPMFCFSEYSVEGSSTVSEFPAVEIGIRICPFRWTEVIPAFYARVLAADPHRT
Homology
[Close]
BLAST of Cp4.1LG06g03220 vs. NCBI nr
Match: KAG6591553.1 (Protein PHOX1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 55.8 bits (133), Expect = 7.21e-07
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = 0 

Query: 45  GIRICPFRWTEVIPAFYARVLAADPHR 71
           GI ICPFRWTEVIPAF+ARV AADPHR
Sbjct: 784 GILICPFRWTEVIPAFHARVPAADPHR 810

The following BLAST results are available for this feature:
BLAST of Cp4.1LG06g03220 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG06g03220 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6591553.17.21e-0788.89Protein PHOX1, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of Cp4.1LG06g03220 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG06g03220 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG06g03220.1Cp4.1LG06g03220.1mRNA