Cp4.1LG06g03120 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG06g03120
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	60S ribosomal protein L39
Location	Cp4.1LG06: 1711671 .. 1713188 (+)
RNA-Seq Expression	Cp4.1LG06g03120
Synteny	Cp4.1LG06g03120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTACGTGTTGTTATTCGACTCTCTAAATGTTTTTCCGTTTTAACTTGGATGATTGAAATTGTGTGTCTGTAATTTGATTTTCTCTTCTCTTCTCTTCCAATTCGCAGCCGTCTCACAAGACTTTCAGAATCAAGAAGAAGCTCGCGAAGAAGATGAGGCAGAACAGGCCAATCCCGCACTGGATCCGCCTGAGAACCGACAACACGATCAGGTATTAAACCTAATTTATTTGAATCTGCTTAATTTCATTCTAATCTCTCTCCATTTCTACTTTCGATCGGATTACAGGTACAATGCGAAGCGCAGGCACTGGCGTCGCACCAAGCTAGGGTTCTGAGGTGCTTTCGATTTAATTTTCAATGTTCATTTACCTTGACTTTTTTAAGATTGAGAACTTGAATTTTCGTACAATTTTTGTAGTTGAGCAACTGAAATCTAGTTCATCTGATATTTTTGTTTAATCATCACTACACTCAAGTTTGAAGTGCTTTCGAATGGAGTGAATTTACTGTCGATGGTTGTCTGTGGTATAAACCTTAATGGCATTTGCTTGCTCCTGTTCTCCAAGGATTTAAACGTGATCGATAGGCATTCTTTGGGAAACTGATCGAAGTCTAGAGATTCTTGAAAACTATTCAAATCAACAAATAACCATTTTCCACTTCCTAGCAACGTTATAATTATGTTAGGATTTAGCTTTGTACTCGTTTTATCGATTAATCTGATAAATCTGAGTAGTTTGGGTTGAACCAATTCATAAAACTCTGAGGCTAAAATATACTTAGAATTCATACTGGCCTTCATTTACAGTGAAAGATAGTATAGAAGATCCAACTAGCTTATCGAGACTTTGTCAATGGTTCGAAGAGAAAATTCTTTGAGATTCCGTTCTGTAGAATACTTGTTACTATCATTTTGACCTTGAACAAGAACCGATCTATATTTTCTAATGTTCTACATCTGTGTCATTGAATTCTGAAGCACTTGCAACTTTAGTTGATCTAAACAGAATAGTCTTCGTCTAGAAAGTCGGTAGAGGTAGAGAACTTGGTCGATGGTTCCGGAAAGAACTTTAGTTGATCATTTCGACTTTGTTGATGGTTCCGGAGAGAATTCTTTGAGATTCCCTTCTGTAGAATACTTGTTAATATCATTCGACCTTGAACAAGAACCGATCTTATATATTCTAAGGTTCTACATCTGTGTCATTGAATTCTGAAGCACTTACAACTTTAGTTGATCTAAACAGACTAGTCTTCGTCTAGAAAGTCGGTAGAGGTAGTTTACTTGATGGTGGAAGACGCCAGACGACATGGTTGAGTAGACTAATCACCCATTTATCTTACTAATCACTGCATATTAACCAAACCTCTTCTTTGTCTAGACTGCGTTTGTTAGGAGGTCTGTTAGGTATGGCTATCTGCTTAGAACCATTTCGAGCTCGCAGATGAACCTTCTTTGAGGGAATTTCCATGGAGTGTAAAGCAAACAATGAAGGCTTCAATAGTATGGTAG

mRNA sequence

ATGGTACCCGTCTCACAAGACTTTCAGAATCAAGAAGAAGCTCGCGAAGAAGATGAGGCAGAACAGGCCAATCCCGCACTGGATCCGCCTGAGAACCGACAACACGATCAGGTACAATGCGAAGCGCAGGCACTGGCGTCGCACCAAGCTAGGAACCATTTCGAGCTCGCAGATGAACCTTCTTTGAGGGAATTTCCATGGAGTGTAAAGCAAACAATGAAGGCTTCAATAGTATGGTAG

Coding sequence (CDS)

ATGGTACCCGTCTCACAAGACTTTCAGAATCAAGAAGAAGCTCGCGAAGAAGATGAGGCAGAACAGGCCAATCCCGCACTGGATCCGCCTGAGAACCGACAACACGATCAGGTACAATGCGAAGCGCAGGCACTGGCGTCGCACCAAGCTAGGAACCATTTCGAGCTCGCAGATGAACCTTCTTTGAGGGAATTTCCATGGAGTGTAAAGCAAACAATGAAGGCTTCAATAGTATGGTAG

Protein sequence

MVPVSQDFQNQEEAREEDEAEQANPALDPPENRQHDQVQCEAQALASHQARNHFELADEPSLREFPWSVKQTMKASIVW

Homology

[Close]

BLAST of Cp4.1LG06g03120 vs. NCBI nr
Match: KAG7031772.1 (hypothetical protein SDJN02_05813, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 81.6 bits (200), Expect = 1.80e-18
Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 1  MVPVSQDFQNQEEAREEDEAEQANPALDPPENRQHDQVQCEAQALASHQAR 51
          MVPVSQDFQNQEEAREEDEAEQA PALDP ENRQ+ Q+Q +AQALASHQAR
Sbjct: 1  MVPVSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQAR 51

[Close]

BLAST of Cp4.1LG06g03120 vs. NCBI nr
Match: KAF5748142.1 (hypothetical protein HS088_TW04G00092 [Tripterygium wilfordii])

HSP 1 Score: 72.4 bits (176), Expect = 2.16e-14
Identity = 38/47 (80.85%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 2  VPVSQDFQNQEEAREEDEAEQANPALDPPENRQHDQVQCEAQALASH 48
          +PVSQD Q+QEEAREEDEAEQA P LDP ENRQ++QVQCEAQALAS+
Sbjct: 51 LPVSQDLQDQEEAREEDEAEQAYPPLDPHENRQYNQVQCEAQALASY 97

[Close]

BLAST of Cp4.1LG06g03120 vs. NCBI nr
Match: KAG5225968.1 (60S ribosomal protein [Salix suchowensis])

HSP 1 Score: 70.1 bits (170), Expect = 1.80e-13
Identity = 37/49 (75.51%), Postives = 44/49 (89.80%), Query Frame = 0


Query: 4  VSQDFQNQEEAREEDEAEQANPALDPPENRQHDQVQCEAQALASHQARN 52
          V+QD Q+QEEA EEDEAEQA+P+LDP E+RQH QVQCEAQALA +QAR+
Sbjct: 8  VTQDLQDQEEAGEEDEAEQAHPSLDPHEDRQHHQVQCEAQALAPYQARS 56

[Close]

BLAST of Cp4.1LG06g03120 vs. NCBI nr
Match: KAF5726265.1 (aspartate aminotransferase chloroplastic [Tripterygium wilfordii])

HSP 1 Score: 72.4 bits (176), Expect = 1.38e-12
Identity = 42/61 (68.85%), Postives = 47/61 (77.05%), Query Frame = 0


Query: 1  MVPVSQDFQNQEEAREEDEAEQANPALDPPENRQHDQVQCEAQALASH---QARNHFELA 58
           V VSQD Q+QEEAREEDEAEQANP+LDP ENRQH+Q+Q EAQALAS       NH  L+
Sbjct: 4  FVAVSQDLQDQEEAREEDEAEQANPSLDPHENRQHNQIQREAQALASFLEDNDMNHLVLS 63

[Close]

BLAST of Cp4.1LG06g03120 vs. NCBI nr
Match: KAF3446223.1 (hypothetical protein FNV43_RR11402 [Rhamnella rubrinervis])

HSP 1 Score: 65.1 bits (157), Expect = 7.93e-12
Identity = 35/47 (74.47%), Postives = 39/47 (82.98%), Query Frame = 0


Query: 4  VSQDFQNQEEAREEDEAEQANPALDPPENRQHDQVQCEAQALASHQA 50
          V QD  NQEEA EEDEAEQA+P+LDP  +RQH QVQCEAQ LAS+QA
Sbjct: 5  VPQDLHNQEEAGEEDEAEQAHPSLDPHAHRQHHQVQCEAQTLASYQA 51

[Close]

BLAST of Cp4.1LG06g03120 vs. ExPASy TrEMBL
Match: A0A7J7DP31 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW04G00092 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.05e-14
Identity = 38/47 (80.85%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 2  VPVSQDFQNQEEAREEDEAEQANPALDPPENRQHDQVQCEAQALASH 48
          +PVSQD Q+QEEAREEDEAEQA P LDP ENRQ++QVQCEAQALAS+
Sbjct: 51 LPVSQDLQDQEEAREEDEAEQAYPPLDPHENRQYNQVQCEAQALASY 97

[Close]

BLAST of Cp4.1LG06g03120 vs. ExPASy TrEMBL
Match: A0A6N2M5H5 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS308422 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 6.86e-14
Identity = 37/48 (77.08%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 4  VSQDFQNQEEAREEDEAEQANPALDPPENRQHDQVQCEAQALASHQAR 51
          V+QD Q+QEEA EEDEAEQA+P+LDP E+RQH QVQCEAQALA +QAR
Sbjct: 22 VTQDLQDQEEAGEEDEAEQAHPSLDPHEDRQHHQVQCEAQALAPYQAR 69

[Close]

BLAST of Cp4.1LG06g03120 vs. ExPASy TrEMBL
Match: A0A7J7BX51 (Aspartate aminotransferase OS=Tripterygium wilfordii OX=458696 GN=HS088_TW23G01007 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 6.69e-13
Identity = 42/61 (68.85%), Postives = 47/61 (77.05%), Query Frame = 0


Query: 1  MVPVSQDFQNQEEAREEDEAEQANPALDPPENRQHDQVQCEAQALASH---QARNHFELA 58
           V VSQD Q+QEEAREEDEAEQANP+LDP ENRQH+Q+Q EAQALAS       NH  L+
Sbjct: 4  FVAVSQDLQDQEEAREEDEAEQANPSLDPHENRQHNQIQREAQALASFLEDNDMNHLVLS 63

[Close]

BLAST of Cp4.1LG06g03120 vs. ExPASy TrEMBL
Match: A0A445K5S6 (60S ribosomal protein L39 OS=Glycine soja OX=3848 GN=D0Y65_013914 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.02e-11
Identity = 42/67 (62.69%), Postives = 47/67 (70.15%), Query Frame = 0


Query: 3   PVSQDFQNQEEAREEDEAEQANPALDPPENRQHDQVQCEAQALASHQA----RNHFELAD 62
           PV+QD QNQEE  EEDEAEQA+P LDP E+RQH QVQ EA +LASHQA    R   E A 
Sbjct: 61  PVAQDIQNQEEVGEEDEAEQAHPLLDPHEDRQHHQVQREAPSLASHQAWILSRAPEEKAK 120

Query: 63  EPSLREF 65
            PS + F
Sbjct: 121 MPSHKTF 127

[Close]

BLAST of Cp4.1LG06g03120 vs. ExPASy TrEMBL
Match: A0A498HNJ3 (Uncharacterized protein (Fragment) OS=Malus domestica OX=3750 GN=DVH24_012792 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.87e-11
Identity = 35/48 (72.92%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 4   VSQDFQNQEEAREEDEAEQANPALDPPENRQHDQVQCEAQALASHQAR 51
           V+Q+  +QEEA EEDEAEQA+P+LDP E+RQH QVQCE QALA HQAR
Sbjct: 129 VAQELHDQEEAGEEDEAEQAHPSLDPYEDRQHHQVQCETQALAPHQAR 176

The following BLAST results are available for this feature:

BLAST of Cp4.1LG06g03120 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG06g03120 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7031772.1	1.80e-18	86.27	hypothetical protein SDJN02_05813, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAF5748142.1	2.16e-14	80.85	hypothetical protein HS088_TW04G00092 [Tripterygium wilfordii]	[more]
KAG5225968.1	1.80e-13	75.51	60S ribosomal protein [Salix suchowensis]	[more]
KAF5726265.1	1.38e-12	68.85	aspartate aminotransferase chloroplastic [Tripterygium wilfordii]	[more]
KAF3446223.1	7.93e-12	74.47	hypothetical protein FNV43_RR11402 [Rhamnella rubrinervis]	[more]

BLAST of Cp4.1LG06g03120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J7DP31	1.05e-14	80.85	Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW04G00092 ...	[more]
A0A6N2M5H5	6.86e-14	77.08	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS308422 PE=4 SV=...	[more]
A0A7J7BX51	6.69e-13	68.85	Aspartate aminotransferase OS=Tripterygium wilfordii OX=458696 GN=HS088_TW23G010...	[more]
A0A445K5S6	1.02e-11	62.69	60S ribosomal protein L39 OS=Glycine soja OX=3848 GN=D0Y65_013914 PE=3 SV=1	[more]
A0A498HNJ3	1.87e-11	72.92	Uncharacterized protein (Fragment) OS=Malus domestica OX=3750 GN=DVH24_012792 PE...	[more]

BLAST of Cp4.1LG06g03120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG06g03120.1	Cp4.1LG06g03120.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009058	biosynthetic process
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:1901564	organonitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
biological_process	GO:0120029	proton export across plasma membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008553	P-type proton-exporting transporter activity
molecular_function	GO:0008483	transaminase activity