Cp4.1LG06g02020 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG06g02020
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG06: 1000640 .. 1000957 (-)
RNA-Seq ExpressionCp4.1LG06g02020
SyntenyCp4.1LG06g02020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCATGTGAAGCAGCGATGGTAGCAATGAACATGGCAAAAAGGTACTTTCGGCGATGAGATTGGTAGCGATTATGAGGGCTTTTCTTTTTATATATAATTACTGTTGAACATGACGACAGGATATTCAACATGAAACTCTCGGCACCGAATCTCTGTTCTTTCGCGATCTAAGGAAGTAGCTGTGGTGATATGAAAAGCATCAGTCAAAATTGTAAAGTTTTCTGTGGATTGTTCGATGTTAGGGCATTTGAAGGCGATTTGTCGGAGATCACGACGCTCTGCGATGCGGAAAACTTGAGGGAGGTGCTTGTGCGCAAG

mRNA sequence

TCATGTGAAGCAGCGATGGTAGCAATGAACATGGCAAAAAGGGCATTTGAAGGCGATTTGTCGGAGATCACGACGCTCTGCGATGCGGAAAACTTGAGGGAGGTGCTTGTGCGCAAG

Coding sequence (CDS)

TCATGTGAAGCAGCGATGGTAGCAATGAACATGGCAAAAAGGGCATTTGAAGGCGATTTGTCGGAGATCACGACGCTCTGCGATGCGGAAAACTTGAGGGAGGTGCTTGTGCGCAAG

Protein sequence

SCEAAMVAMNMAKRAFEGDLSEITTLCDAENLREVLVRK
Homology
[Close]
BLAST of Cp4.1LG06g02020 vs. NCBI nr
Match: KAG7024284.1 (hypothetical protein SDJN02_13098, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 66.2 bits (160), Expect = 4.87e-13
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 0 

Query: 6  MVAMNMAKRAFEGDLSEITTLCDAENLREVLVRK 39
          MVAMNMAKRAFEGDLSEITTLCDAENLRE+L RK
Sbjct: 1  MVAMNMAKRAFEGDLSEITTLCDAENLRELLARK 34

[Close]
BLAST of Cp4.1LG06g02020 vs. NCBI nr
Match: KAG6591407.1 (Cyclin-A3-4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 66.2 bits (160), Expect = 3.71e-11
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 0 

Query: 6  MVAMNMAKRAFEGDLSEITTLCDAENLREVLVRK 39
          MVAMNMAKRAFEGDLSEITTLCDAENLRE+L RK
Sbjct: 1  MVAMNMAKRAFEGDLSEITTLCDAENLRELLARK 34

The following BLAST results are available for this feature:
BLAST of Cp4.1LG06g02020 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG06g02020 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7024284.14.87e-1394.12hypothetical protein SDJN02_13098, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6591407.13.71e-1194.12Cyclin-A3-4, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of Cp4.1LG06g02020 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG06g02020 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG06g02020.1Cp4.1LG06g02020.1mRNA