Cp4.1LG06g01440 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG06g01440
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	SANT domain-containing protein
Location	Cp4.1LG06: 699448 .. 700986 (-)
RNA-Seq Expression	Cp4.1LG06g01440
Synteny	Cp4.1LG06g01440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGGCTCCTATGATGAACACGCCACCTTCCTTGCCGGACCTCTCCTTGCAGATCAGCCTTCCAATGTCAACGAAGCCCAACCCACCAAGCTCAACCACCACGCATTCTGGTTGCAGTGCAAAAAGTGATTTGAGCCATAAAAATAATCTGTTCCGCTTAGGGTTTGAAGTGGGAGATATGGGTCTTCTACAGCGTCATCATCAAGCATGTAATGTCCGTTGCCGCCGCGACTTCAAAAGAAGTGTCGGTGATGTTGCGTACGGAGTAAAAAGAAGCCCCCGCGCTCCCAGAATGAGATGGACTACAACTTTACACGCTCATTTTATACACGCCGTCGAGCTTCTTGGTGGCCATGAAAGTAAATACACCAAACCATCATTCACCTTTAATTCTTACAACAAATTGGAGCTTATTTTTATCTCTCTCTCAGGAGCTACACCAAAATCTGTATTGGAGCTTATGAATGTCAAGGATCTAACCCTCGCTCATGTCAAAAGCCATTTGCAGGTTGGTGGGTTTCAATTTCTTCCAATAATCCAATTGGAAATTTAAAAAAAAAAAAGCAAGGGAACTTTAAATCTAAACACATTATTATGGTTTTGTTCGTGCAGATGTACAGAACAGTGAAGAACACTATCAAGGGAACAGGTAATGAATACAACATTTTGATATGGGTTAGGAATCACGACTCTCCACGGTATGATATTTGTTCATTTTGAGCATAAGTTCTAGTGGGTTTGTTTTTGGCTTTCTAAAAAGTCTCAGTGGAGATAGTATTCCTCACTTATACACTCGTGATCTTCCACTAAATTAACCGACTCACTCCCAGTAATCCTCATCAATATGATCATTCAAATTCTTCATATGAATGATTGAGAACTTAAGATGGTGACCTGTGAATGTTGCAGATGATTCTGGAAGGCCTGAGCTTGAACCAGATGCTGTTGTTTTATCTTCTTCTTCTTCATCTTCGTCGTCGGCTTCTGCTCAAAACTCGAACTTTCAATGGCGTCGTCTGCAGAGAATCCAAAGGTGAGATCATCTCTGTGCTCTTTTTCTACCCCCATGGAGTGATTTGATTTTCTGGTTCAAATCTTAAATTTTTTTTTTTATTATTGTAAAACTTTTTCAAAATATTTAAATTTTGTATTTTTAAATGATGAATTAAAAATTTTAATTATCGTATATATTTTATTTTTCTCTTGCTTGCAGAAGTAGTTTGGTAACGTCAATGCACAAGAGTTGTGACAGGACCAAGTCAAACGGCGACGTTTTCGCTAAATCCAGAGGAATTAAGGTAATAAATTTGTTATTAGAAAAAAAAAAAAAAAAACAGCCCTAAAATTATTATCTTTAAAATTCGGTGATATTATAAAGGTAATTTGTTTTTTTATTTAAAAAAATAATATAGGTGGAAGGAAGCAACGGAGATTATGAGAAGGCAATTGCCATGCAGCGGATTAATTTAGAGTTCACTCTTGGAAGCCCAAGTTGGCAATTGGATTATGGCGATGCAAATGAGCTTGCTCTTCTCAATTGC

mRNA sequence

CGGCTCCTATGATGAACACGCCACCTTCCTTGCCGGACCTCTCCTTGCAGATCAGCCTTCCAATGTCAACGAAGCCCAACCCACCAAGCTCAACCACCACGCATTCTGGTTGCAGTGCAAAAAGTGATTTGAGCCATAAAAATAATCTGTTCCGCTTAGGGTTTGAAGTGGGAGATATGGGTCTTCTACAGCGTCATCATCAAGCATGTAATGTCCGTTGCCGCCGCGACTTCAAAAGAAGTGTCGGTGATGTTGCGTACGGAGTAAAAAGAAGCCCCCGCGCTCCCAGAATGAGATGGACTACAACTTTACACGCTCATTTTATACACGCCGTCGAGCTTCTTGGTGGCCATGAAAGAGCTACACCAAAATCTGTATTGGAGCTTATGAATGTCAAGGATCTAACCCTCGCTCATGTCAAAAGCCATTTGCAGGTTGATGATTCTGGAAGGCCTGAGCTTGAACCAGATGCTGTTGTTTTATCTTCTTCTTCTTCATCTTCGTCAAGTAGTTTGGTAACGTCAATGCACAAGAGTTGTGACAGGACCAAGTCAAACGGCGACGTTTTCGCTAAATCCAGAGGAATTAAGGTGGAAGGAAGCAACGGAGATTATGAGAAGGCAATTGCCATGCAGCGGATTAATTTAGAGTTCACTCTTGGAAGCCCAAGTTGGCAATTGGATTATGGCGATGCAAATGAGCTTGCTCTTCTCAATTGC

Coding sequence (CDS)

ATGATGAACACGCCACCTTCCTTGCCGGACCTCTCCTTGCAGATCAGCCTTCCAATGTCAACGAAGCCCAACCCACCAAGCTCAACCACCACGCATTCTGGTTGCAGTGCAAAAAGTGATTTGAGCCATAAAAATAATCTGTTCCGCTTAGGGTTTGAAGTGGGAGATATGGGTCTTCTACAGCGTCATCATCAAGCATGTAATGTCCGTTGCCGCCGCGACTTCAAAAGAAGTGTCGGTGATGTTGCGTACGGAGTAAAAAGAAGCCCCCGCGCTCCCAGAATGAGATGGACTACAACTTTACACGCTCATTTTATACACGCCGTCGAGCTTCTTGGTGGCCATGAAAGAGCTACACCAAAATCTGTATTGGAGCTTATGAATGTCAAGGATCTAACCCTCGCTCATGTCAAAAGCCATTTGCAGGTTGATGATTCTGGAAGGCCTGAGCTTGAACCAGATGCTGTTGTTTTATCTTCTTCTTCTTCATCTTCGTCAAGTAGTTTGGTAACGTCAATGCACAAGAGTTGTGACAGGACCAAGTCAAACGGCGACGTTTTCGCTAAATCCAGAGGAATTAAGGTGGAAGGAAGCAACGGAGATTATGAGAAGGCAATTGCCATGCAGCGGATTAATTTAGAGTTCACTCTTGGAAGCCCAAGTTGGCAATTGGATTATGGCGATGCAAATGAGCTTGCTCTTCTCAATTGC

Protein sequence

MMNTPPSLPDLSLQISLPMSTKPNPPSSTTTHSGCSAKSDLSHKNNLFRLGFEVGDMGLLQRHHQACNVRCRRDFKRSVGDVAYGVKRSPRAPRMRWTTTLHAHFIHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQVDDSGRPELEPDAVVLSSSSSSSSSSLVTSMHKSCDRTKSNGDVFAKSRGIKVEGSNGDYEKAIAMQRINLEFTLGSPSWQLDYGDANELALLNC

Homology

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BLAST of Cp4.1LG06g01440 vs. ExPASy Swiss-Prot
Match: Q9FJV5 (Probable transcription factor KAN4 OS=Arabidopsis thaliana OX=3702 GN=KAN4 PE=1 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 9.7e-39
Identity = 123/283 (43.46%), Postives = 157/283 (55.48%), Query Frame = 0


Query: 2   MNTPPSLPDLSLQISLPMSTKPNP-----PSSTTTHSGCSAKSDLSHKNNLFR-----LG 61
           M    S+PDLSLQISLP      P      SST++ SG S+ SDLSH+NN F      LG
Sbjct: 10  MRASNSVPDLSLQISLPNYHAGKPLHGGDRSSTSSDSG-SSLSDLSHENNFFNKPLLSLG 69

Query: 62  FEVGDMGLLQRHHQACNVRCR-----RDFKRSVGDVAYGVKRSPRAPRMRWTTTLHAHFI 121
           F+         HHQ  +   +     RDFKRS   +  G+KRS RAPRMRWT+TLHAHF+
Sbjct: 70  FD--------HHHQRRSNMFQPQIYGRDFKRSSSSMV-GLKRSIRAPRMRWTSTLHAHFV 129

Query: 122 HAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQV------DDSGRP---ELEPDAVV 181
           HAV+LLGGHERATPKSVLELMNVKDLTLAHVKSHLQ+       D G P   ++E +A  
Sbjct: 130 HAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKCTDKGSPGEGKVEKEAEQ 189

Query: 182 L-------------SSSSSSSSSSLVTSMHKSCDRTKSNGDVFAKSRGIKVEG------- 238
                         + ++S +SSS+  +   S   TK        SR I  +        
Sbjct: 190 RIEDNNNNEEADEGTDTNSPNSSSVQKTQRASWSSTKE------VSRSISTQAYSHLGTT 249

[Close]

BLAST of Cp4.1LG06g01440 vs. ExPASy Swiss-Prot
Match: Q9C616 (Probable transcription factor KAN2 OS=Arabidopsis thaliana OX=3702 GN=KAN2 PE=2 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 5.2e-24
Identity = 78/183 (42.62%), Postives = 98/183 (53.55%), Query Frame = 0


Query: 23  PNPPSSTTTHSGCSAKSDLSHKNNLFRLGFEVGDMGLLQRHHQACNVRCRRDFKRSVGDV 82
           P  PSS    S  S+ + L+  NN F     V +      HHQ  N        R+    
Sbjct: 154 PFDPSSLIPSSSTSSPA-LTGNNNSFNTS-SVSNPNYHNHHHQTLN--------RARFMP 213

Query: 83  AYGVKRSPRAPRMRWTTTLHAHFIHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQ 142
            +  KRS RAPRMRWTTTLHA F+HAVELLGGHERATPKSVLELM+VKDLTLAHVKSHLQ
Sbjct: 214 RFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 273

Query: 143 V-------DDSGRPELEPDAVVLSSSSSSSSSSLVTSMHKSCDRTKSNGDVFAKSRGIKV 199
           +       D +     + D     SS  ++S   +  M++    ++   +   KS G+  
Sbjct: 274 MYRTVKTTDKAAASSGQSDVYENGSSGDNNSDDWMFDMNRKSRDSEELTNPLEKSNGLWT 326

[Close]

BLAST of Cp4.1LG06g01440 vs. ExPASy Swiss-Prot
Match: Q0J235 (Probable transcription factor RL9 OS=Oryza sativa subsp. japonica OX=39947 GN=RL9 PE=2 SV=2)

HSP 1 Score: 108.6 bits (270), Expect = 9.7e-23
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 87  KRSPRAPRMRWTTTLHAHFIHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQV 144
           KRS RAPRMRWT+TLHA F+HAVELLGGHERATPKSVLELM+VKDLTLAHVKSHLQ+
Sbjct: 319 KRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQM 375

[Close]

BLAST of Cp4.1LG06g01440 vs. ExPASy Swiss-Prot
Match: Q93WJ9 (Transcription repressor KAN1 OS=Arabidopsis thaliana OX=3702 GN=KAN1 PE=1 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 6.3e-22
Identity = 62/108 (57.41%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 87  KRSPRAPRMRWTTTLHAHFIHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQV--- 146
           KRS RAPRMRWT++LHA F+HAVELLGGHERATPKSVLELM+VKDLTLAHVKSHLQ+   
Sbjct: 214 KRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 273

Query: 147 -----------DDSGRPE--LEPDAVVLSSSSSSSSSSLVTSMHKSCD 179
                      D SG  E  +  + V   SS+   + S  TS+H+  D
Sbjct: 274 VKTTNKPAASSDGSGEEEMGINGNEVHHQSSTDQRAQSDDTSLHQETD 321

[Close]

BLAST of Cp4.1LG06g01440 vs. ExPASy Swiss-Prot
Match: Q941I2 (Probable transcription factor KAN3 OS=Arabidopsis thaliana OX=3702 GN=KAN3 PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.8e-21
Identity = 61/118 (51.69%), Postives = 81/118 (68.64%), Query Frame = 0


Query: 84  YGVKRSPRAPRMRWTTTLHAHFIHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQV 143
           +  KR  RAPRMRWTTTLHAHF+HAV+LLGGHERATPKSVLELM+V+DLTLAHVKSHLQ+
Sbjct: 156 FTAKRGVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQM 215

Query: 144 DDSGRPELEPDAVVLSSSSSSSSSSLVTSMHKSCDRTKSNGDVFAKSR-GIKVEGSNG 201
             + +   +P     S  S   + S V S  ++ + T    +  +++R  +K + S+G
Sbjct: 216 YRTIKSTEKP--TTSSGQSDCENGSQVNSEREARNLTGLWNNSSSEARFQLKAKASSG 271

[Close]

BLAST of Cp4.1LG06g01440 vs. NCBI nr
Match: XP_023535459.1 (probable transcription factor KAN4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 446 bits (1147), Expect = 4.53e-157
Identity = 235/266 (88.35%), Postives = 236/266 (88.72%), Query Frame = 0


Query: 2   MNTPPSLPDLSLQISLPMSTKPNPPSSTTTHSGCSAKSDLSHKNNLFRLGFEVGDMGLLQ 61
           MNTPPSLPDLSLQISLPMSTKPNPPSSTTTHSGCSAKSDLSHKNNLFRLGFEVGDMGLLQ
Sbjct: 1   MNTPPSLPDLSLQISLPMSTKPNPPSSTTTHSGCSAKSDLSHKNNLFRLGFEVGDMGLLQ 60

Query: 62  RHHQACNVRCRRDFKRSVGDVAYGVKRSPRAPRMRWTTTLHAHFIHAVELLGGHERATPK 121
           RHHQACNVRCRRDFKRSVGDVAYGVKRSPRAPRMRWTTTLHAHFIHAVELLGGHERATPK
Sbjct: 61  RHHQACNVRCRRDFKRSVGDVAYGVKRSPRAPRMRWTTTLHAHFIHAVELLGGHERATPK 120

Query: 122 SVLELMNVKDLTLAHVKSHLQV-----------DDSGRPELEPDAVVLSSSSSSSSS--- 181
           SVLELMNVKDLTLAHVKSHLQ+           DDSGRPELEPDAVVLSSSSSSSSS   
Sbjct: 121 SVLELMNVKDLTLAHVKSHLQMYRTVKNTIKGTDDSGRPELEPDAVVLSSSSSSSSSASA 180

Query: 182 ----------------SLVTSMHKSCDRTKSNGDVFAKSRGIKVEGSNGDYEKAIAMQRI 237
                           SLVTSMHKSCDRTKSNGDVFAKSRGIKVEGSNGDYEKAIAMQRI
Sbjct: 181 QNSNFQWRRLQRIQRSSLVTSMHKSCDRTKSNGDVFAKSRGIKVEGSNGDYEKAIAMQRI 240

[Close]

BLAST of Cp4.1LG06g01440 vs. NCBI nr
Match: XP_022976047.1 (probable transcription factor KAN4 [Cucurbita maxima])

HSP 1 Score: 432 bits (1111), Expect = 1.49e-151
Identity = 231/268 (86.19%), Postives = 233/268 (86.94%), Query Frame = 0


Query: 2   MNTPPSLPDLSLQISLPMSTKPNPPSS--TTTHSGCSAKSDLSHKNNLFRLGFEVGDMGL 61
           MNTPPSLPDLSLQISLPMSTKPNPPSS  TTTHSGCSAKSDLSHKNNLFRLGFEVGDMGL
Sbjct: 1   MNTPPSLPDLSLQISLPMSTKPNPPSSCSTTTHSGCSAKSDLSHKNNLFRLGFEVGDMGL 60

Query: 62  LQRHHQACNVRCRRDFKRSVGDVAYGVKRSPRAPRMRWTTTLHAHFIHAVELLGGHERAT 121
           LQRHHQACNVRCRRDFK SVGDVAYGVKR PRAPRMRWTTTLHAHFIHAVELLGGHERAT
Sbjct: 61  LQRHHQACNVRCRRDFKTSVGDVAYGVKRIPRAPRMRWTTTLHAHFIHAVELLGGHERAT 120

Query: 122 PKSVLELMNVKDLTLAHVKSHLQV-----------DDSGRPELEPDAVVLSSSSSSSS-- 181
           PKSVLELMNVKDLTLAHVKSHLQ+           DDSGRPELEPDAVVLSSSSSSSS  
Sbjct: 121 PKSVLELMNVKDLTLAHVKSHLQMYRTVKNTIKGTDDSGRPELEPDAVVLSSSSSSSSLA 180

Query: 182 -----------------SSLVTSMHKSCDRTKSNGDVFAKSRGIKVEGSNGDYEKAIAMQ 237
                            SSLVTSMH+SCDRTKSNGDVFAKSRGIKVEGSNG YEKAIAMQ
Sbjct: 181 SAQNSNFQWRHLQRIQRSSLVTSMHESCDRTKSNGDVFAKSRGIKVEGSNGHYEKAIAMQ 240

[Close]

BLAST of Cp4.1LG06g01440 vs. NCBI nr
Match: XP_022937061.1 (probable transcription factor KAN4 [Cucurbita moschata])

HSP 1 Score: 424 bits (1089), Expect = 3.00e-148
Identity = 226/267 (84.64%), Postives = 229/267 (85.77%), Query Frame = 0


Query: 1   MMNTPPSLPDLSLQISLPMSTKPNPPSSTTTHSGCSAKSDLSHKNNLFRLGFEVGDMGLL 60
           MMNTPPSLPDLSLQISLPMST PNPPSSTTTHSGCSA  DLSHKNNLFRLGFEVGD+GLL
Sbjct: 1   MMNTPPSLPDLSLQISLPMSTNPNPPSSTTTHSGCSA--DLSHKNNLFRLGFEVGDVGLL 60

Query: 61  QRHHQACNVRCRRDFKRSVGDVAYGVKRSPRAPRMRWTTTLHAHFIHAVELLGGHERATP 120
           QRHHQACNVR RRDFKRSVGDVAYGVKRSPRAPRMRWTTTLHAHFIHAVELLGGHERATP
Sbjct: 61  QRHHQACNVRSRRDFKRSVGDVAYGVKRSPRAPRMRWTTTLHAHFIHAVELLGGHERATP 120

Query: 121 KSVLELMNVKDLTLAHVKSHLQV-----------DDSGRPELEPDAVVLSSSSSSSSS-- 180
           KSVLELMNVKDLTLAHVKSHLQ+           DDSGRPELEPDA VLSSSSSSSSS  
Sbjct: 121 KSVLELMNVKDLTLAHVKSHLQMYRTVKNTVKGTDDSGRPELEPDAAVLSSSSSSSSSAS 180

Query: 181 -----------------SLVTSMHKSCDRTKSNGDVFAKSRGIKVEGSNGDYEKAIAMQR 237
                            SLVTSMHK CDRTKSNGDVFA SRGIKVEGSNGDYEK IAMQR
Sbjct: 181 AQNSNFGWRRLQRIQRSSLVTSMHKRCDRTKSNGDVFANSRGIKVEGSNGDYEKPIAMQR 240

[Close]

BLAST of Cp4.1LG06g01440 vs. NCBI nr
Match: KAG6591346.1 (putative transcription factor KAN4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 417 bits (1072), Expect = 1.17e-145
Identity = 224/267 (83.90%), Postives = 226/267 (84.64%), Query Frame = 0


Query: 1   MMNTPPSLPDLSLQISLPMSTKPNPPSSTTTHSGCSAKSDLSHKNNLFRLGFEVGDMGLL 60
           MMNTPPSLPDLSLQISLPMSTKPNPPSSTTTHSGCSA  DLSHKNN FRLGFEVGDMGL 
Sbjct: 1   MMNTPPSLPDLSLQISLPMSTKPNPPSSTTTHSGCSA--DLSHKNNRFRLGFEVGDMGLP 60

Query: 61  QRHHQACNVRCRRDFKRSVGDVAYGVKRSPRAPRMRWTTTLHAHFIHAVELLGGHERATP 120
           QRHHQACNVR RRDFKRS GDV YGVKRSPRAPRMRWTTTLHAHFIHAVELLGGHERATP
Sbjct: 61  QRHHQACNVRSRRDFKRSGGDVGYGVKRSPRAPRMRWTTTLHAHFIHAVELLGGHERATP 120

Query: 121 KSVLELMNVKDLTLAHVKSHLQV-----------DDSGRPELEPDAVVLSSSSSSSSS-- 180
           KSVLELMNVKDLTLAHVKSHLQ+           DDSGRPELEPDA VLSSSSSSSSS  
Sbjct: 121 KSVLELMNVKDLTLAHVKSHLQMYRTVKNTIKGTDDSGRPELEPDAAVLSSSSSSSSSAS 180

Query: 181 -----------------SLVTSMHKSCDRTKSNGDVFAKSRGIKVEGSNGDYEKAIAMQR 237
                            SLVTSMHK CD TKSNGDVFA SRGIKVEGSNGDYEKAIAMQR
Sbjct: 181 AQNSNFGWRRLQRIQRSSLVTSMHKRCDGTKSNGDVFANSRGIKVEGSNGDYEKAIAMQR 240

[Close]

BLAST of Cp4.1LG06g01440 vs. NCBI nr
Match: KAG7024223.1 (putative transcription factor KAN4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 325 bits (833), Expect = 1.27e-109
Identity = 180/263 (68.44%), Postives = 193/263 (73.38%), Query Frame = 0


Query: 1   MMNTPPSLPDLSLQISLPMSTKPNPPSSTTTHSGCSAKSDLSHKNNLFRLGFEVGDMGLL 60
           MMNTPPSLPDLSLQISLPMSTKPNPPSSTTTHSGCSA  DLSHKNN FRLGFEVGDMGL 
Sbjct: 1   MMNTPPSLPDLSLQISLPMSTKPNPPSSTTTHSGCSA--DLSHKNNRFRLGFEVGDMGLP 60

Query: 61  QRHHQACNVRCRRDFKRSVGDVAYGVKRSPRAPRMRWTTTLHAHFIHAVELLGGHER--- 120
           QRHHQACNVR RRDFKRSVGDV YGVKRSPRAPRMRWTTTLHAHFIHAVELLGGHE    
Sbjct: 61  QRHHQACNVRSRRDFKRSVGDVGYGVKRSPRAPRMRWTTTLHAHFIHAVELLGGHESKYA 120

Query: 121 -----------------------ATPKSVLELMNVKDLTLAHVKSHLQVDDSGRPELEPD 180
                                  ATPKSVLELMNVKDLTLAHVKSHLQ+  + +  ++  
Sbjct: 121 KPSFTFNSYNKLELIFISLSLSGATPKSVLELMNVKDLTLAHVKSHLQMYRTVKNTIKGT 180

Query: 181 AVVLSSSSSSSSSSLVTSMHKSCDRTKSNGDVFAKSRGIKVEGSNGDYEKAIAMQRINLE 237
                 +  ++S  ++  +H               +   KVEGSNGDYEKAIAMQRINLE
Sbjct: 181 G-----NGYNTSDMIIQILHM--------------NENPKVEGSNGDYEKAIAMQRINLE 240

[Close]

BLAST of Cp4.1LG06g01440 vs. ExPASy TrEMBL
Match: A0A6J1IEP7 (probable transcription factor KAN4 OS=Cucurbita maxima OX=3661 GN=LOC111476566 PE=4 SV=1)

HSP 1 Score: 432 bits (1111), Expect = 7.21e-152
Identity = 231/268 (86.19%), Postives = 233/268 (86.94%), Query Frame = 0


Query: 2   MNTPPSLPDLSLQISLPMSTKPNPPSS--TTTHSGCSAKSDLSHKNNLFRLGFEVGDMGL 61
           MNTPPSLPDLSLQISLPMSTKPNPPSS  TTTHSGCSAKSDLSHKNNLFRLGFEVGDMGL
Sbjct: 1   MNTPPSLPDLSLQISLPMSTKPNPPSSCSTTTHSGCSAKSDLSHKNNLFRLGFEVGDMGL 60

Query: 62  LQRHHQACNVRCRRDFKRSVGDVAYGVKRSPRAPRMRWTTTLHAHFIHAVELLGGHERAT 121
           LQRHHQACNVRCRRDFK SVGDVAYGVKR PRAPRMRWTTTLHAHFIHAVELLGGHERAT
Sbjct: 61  LQRHHQACNVRCRRDFKTSVGDVAYGVKRIPRAPRMRWTTTLHAHFIHAVELLGGHERAT 120

Query: 122 PKSVLELMNVKDLTLAHVKSHLQV-----------DDSGRPELEPDAVVLSSSSSSSS-- 181
           PKSVLELMNVKDLTLAHVKSHLQ+           DDSGRPELEPDAVVLSSSSSSSS  
Sbjct: 121 PKSVLELMNVKDLTLAHVKSHLQMYRTVKNTIKGTDDSGRPELEPDAVVLSSSSSSSSLA 180

Query: 182 -----------------SSLVTSMHKSCDRTKSNGDVFAKSRGIKVEGSNGDYEKAIAMQ 237
                            SSLVTSMH+SCDRTKSNGDVFAKSRGIKVEGSNG YEKAIAMQ
Sbjct: 181 SAQNSNFQWRHLQRIQRSSLVTSMHESCDRTKSNGDVFAKSRGIKVEGSNGHYEKAIAMQ 240

[Close]

BLAST of Cp4.1LG06g01440 vs. ExPASy TrEMBL
Match: A0A6J1F986 (probable transcription factor KAN4 OS=Cucurbita moschata OX=3662 GN=LOC111443475 PE=4 SV=1)

HSP 1 Score: 424 bits (1089), Expect = 1.45e-148
Identity = 226/267 (84.64%), Postives = 229/267 (85.77%), Query Frame = 0


Query: 1   MMNTPPSLPDLSLQISLPMSTKPNPPSSTTTHSGCSAKSDLSHKNNLFRLGFEVGDMGLL 60
           MMNTPPSLPDLSLQISLPMST PNPPSSTTTHSGCSA  DLSHKNNLFRLGFEVGD+GLL
Sbjct: 1   MMNTPPSLPDLSLQISLPMSTNPNPPSSTTTHSGCSA--DLSHKNNLFRLGFEVGDVGLL 60

Query: 61  QRHHQACNVRCRRDFKRSVGDVAYGVKRSPRAPRMRWTTTLHAHFIHAVELLGGHERATP 120
           QRHHQACNVR RRDFKRSVGDVAYGVKRSPRAPRMRWTTTLHAHFIHAVELLGGHERATP
Sbjct: 61  QRHHQACNVRSRRDFKRSVGDVAYGVKRSPRAPRMRWTTTLHAHFIHAVELLGGHERATP 120

Query: 121 KSVLELMNVKDLTLAHVKSHLQV-----------DDSGRPELEPDAVVLSSSSSSSSS-- 180
           KSVLELMNVKDLTLAHVKSHLQ+           DDSGRPELEPDA VLSSSSSSSSS  
Sbjct: 121 KSVLELMNVKDLTLAHVKSHLQMYRTVKNTVKGTDDSGRPELEPDAAVLSSSSSSSSSAS 180

Query: 181 -----------------SLVTSMHKSCDRTKSNGDVFAKSRGIKVEGSNGDYEKAIAMQR 237
                            SLVTSMHK CDRTKSNGDVFA SRGIKVEGSNGDYEK IAMQR
Sbjct: 181 AQNSNFGWRRLQRIQRSSLVTSMHKRCDRTKSNGDVFANSRGIKVEGSNGDYEKPIAMQR 240

[Close]

BLAST of Cp4.1LG06g01440 vs. ExPASy TrEMBL
Match: A0A5A7UT98 (Putative transcription factor KAN4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1312G00080 PE=4 SV=1)

HSP 1 Score: 323 bits (829), Expect = 5.90e-109
Identity = 183/267 (68.54%), Postives = 198/267 (74.16%), Query Frame = 0


Query: 2   MNTPPSLPDLSLQISLPMSTKP------NPPSSTTTHSGCSAKSDLSHKNNLFRLGFEVG 61
           MNTP S PDLSLQISLPMST P       P SSTT  S  S KSDLSH++ LF LGFE G
Sbjct: 1   MNTPSSFPDLSLQISLPMSTLPCEAKAIKPQSSTTVDSSSSGKSDLSHESGLFHLGFEAG 60

Query: 62  DM-GLLQRHHQAC-NVRCRRDFKRSVGDVAYGVKRSPRAPRMRWTTTLHAHFIHAVELLG 121
           D+ G L+R HQAC NVR  RDFKRS G V  GV+R+ RAPRMRWTTTLHAHF+HAVELLG
Sbjct: 61  DLDGPLRRPHQACCNVRDHRDFKRSRGRVGCGVRRNIRAPRMRWTTTLHAHFVHAVELLG 120

Query: 122 GHERATPKSVLELMNVKDLTLAHVKSHLQV------------DDSGRPELEPDAVVLSSS 181
           GHERATPKSVLELMNVKDLTLAHVKSHLQ+            DD GRPE+E D +VLSS 
Sbjct: 121 GHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKNTVKETADDCGRPEVEGDGMVLSSC 180

Query: 182 SSSSS-----------SSLVTSMHKSCDRTKSNGDVFAKSRGIKVEGSNGDYEKAIAMQR 237
              S+           SS VTSMHKSCD TKSN D FAKSRGIKVEGS+GDY +AI M+R
Sbjct: 181 VKKSNFGSNHFQRIQRSSFVTSMHKSCDTTKSNADAFAKSRGIKVEGSSGDYHEAITMER 240

[Close]

BLAST of Cp4.1LG06g01440 vs. ExPASy TrEMBL
Match: A0A1S3C0D9 (probable transcription factor KAN4 OS=Cucumis melo OX=3656 GN=LOC103495027 PE=4 SV=1)

HSP 1 Score: 323 bits (829), Expect = 5.90e-109
Identity = 183/267 (68.54%), Postives = 198/267 (74.16%), Query Frame = 0


Query: 2   MNTPPSLPDLSLQISLPMSTKP------NPPSSTTTHSGCSAKSDLSHKNNLFRLGFEVG 61
           MNTP S PDLSLQISLPMST P       P SSTT  S  S KSDLSH++ LF LGFE G
Sbjct: 1   MNTPSSFPDLSLQISLPMSTLPCEAKAIKPQSSTTVDSSSSGKSDLSHESGLFHLGFEAG 60

Query: 62  DM-GLLQRHHQAC-NVRCRRDFKRSVGDVAYGVKRSPRAPRMRWTTTLHAHFIHAVELLG 121
           D+ G L+R HQAC NVR  RDFKRS G V  GV+R+ RAPRMRWTTTLHAHF+HAVELLG
Sbjct: 61  DLDGPLRRPHQACCNVRDHRDFKRSRGRVGCGVRRNIRAPRMRWTTTLHAHFVHAVELLG 120

Query: 122 GHERATPKSVLELMNVKDLTLAHVKSHLQV------------DDSGRPELEPDAVVLSSS 181
           GHERATPKSVLELMNVKDLTLAHVKSHLQ+            DD GRPE+E D +VLSS 
Sbjct: 121 GHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKNTVKETADDCGRPEVEGDGMVLSSC 180

Query: 182 SSSSS-----------SSLVTSMHKSCDRTKSNGDVFAKSRGIKVEGSNGDYEKAIAMQR 237
              S+           SS VTSMHKSCD TKSN D FAKSRGIKVEGS+GDY +AI M+R
Sbjct: 181 VKKSNFGSNHFQRIQRSSFVTSMHKSCDTTKSNADAFAKSRGIKVEGSSGDYHEAITMER 240

[Close]

BLAST of Cp4.1LG06g01440 vs. ExPASy TrEMBL
Match: A0A0A0LFY8 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G852530 PE=4 SV=1)

HSP 1 Score: 317 bits (811), Expect = 3.44e-106
Identity = 182/269 (67.66%), Postives = 198/269 (73.61%), Query Frame = 0


Query: 2   MNTPPSLPDLSLQISLPMSTKP------NPPSSTTTHSGCSAKSDLSHKNNLFR-LGFEV 61
           MNTP S PDLSLQISLPMST P       P SSTT  S  S KSDLSH++ LF  LGFE 
Sbjct: 1   MNTPSSFPDLSLQISLPMSTLPCEAKATKPRSSTTMDSSSSGKSDLSHESGLFHHLGFEA 60

Query: 62  GDMGLLQRH-HQA--CNVRCRRDFKRSVGDVAYGVKRSPRAPRMRWTTTLHAHFIHAVEL 121
           GD+ +  R  HQA  CNVR  RDFKRS G V  GV+R+ RAPRMRWTTTLHAHF+HAVEL
Sbjct: 61  GDLEVPPRRPHQAACCNVRDHRDFKRSGGRVGCGVRRNIRAPRMRWTTTLHAHFVHAVEL 120

Query: 122 LGGHERATPKSVLELMNVKDLTLAHVKSHLQV------------DDSGRPELEPDAVVLS 181
           LGGHERATPKSVLELMNVKDLTLAHVKSHLQ+            DD GRPE+E D +VLS
Sbjct: 121 LGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKNTVKETADDCGRPEVEEDGMVLS 180

Query: 182 SSSSSSS-----------SSLVTSMHKSCDRTKSNGDVFAKSRGIKVEGSNGDYEKAIAM 237
           S    S+           SSLVTSMH SC RTKSN D FAKSRGIKVEGSNGDY++AI M
Sbjct: 181 SCVKKSNFGSNHFQRIQRSSLVTSMHNSCHRTKSNADAFAKSRGIKVEGSNGDYQEAITM 240

[Close]

BLAST of Cp4.1LG06g01440 vs. TAIR 10
Match: AT5G42630.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 161.8 bits (408), Expect = 6.9e-40
Identity = 123/283 (43.46%), Postives = 157/283 (55.48%), Query Frame = 0


Query: 2   MNTPPSLPDLSLQISLPMSTKPNP-----PSSTTTHSGCSAKSDLSHKNNLFR-----LG 61
           M    S+PDLSLQISLP      P      SST++ SG S+ SDLSH+NN F      LG
Sbjct: 10  MRASNSVPDLSLQISLPNYHAGKPLHGGDRSSTSSDSG-SSLSDLSHENNFFNKPLLSLG 69

Query: 62  FEVGDMGLLQRHHQACNVRCR-----RDFKRSVGDVAYGVKRSPRAPRMRWTTTLHAHFI 121
           F+         HHQ  +   +     RDFKRS   +  G+KRS RAPRMRWT+TLHAHF+
Sbjct: 70  FD--------HHHQRRSNMFQPQIYGRDFKRSSSSMV-GLKRSIRAPRMRWTSTLHAHFV 129

Query: 122 HAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQV------DDSGRP---ELEPDAVV 181
           HAV+LLGGHERATPKSVLELMNVKDLTLAHVKSHLQ+       D G P   ++E +A  
Sbjct: 130 HAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKCTDKGSPGEGKVEKEAEQ 189

Query: 182 L-------------SSSSSSSSSSLVTSMHKSCDRTKSNGDVFAKSRGIKVEG------- 238
                         + ++S +SSS+  +   S   TK        SR I  +        
Sbjct: 190 RIEDNNNNEEADEGTDTNSPNSSSVQKTQRASWSSTKE------VSRSISTQAYSHLGTT 249

[Close]

BLAST of Cp4.1LG06g01440 vs. TAIR 10
Match: AT5G42630.2 (Homeodomain-like superfamily protein )

HSP 1 Score: 146.4 bits (368), Expect = 3.0e-35
Identity = 92/157 (58.60%), Postives = 106/157 (67.52%), Query Frame = 0


Query: 2   MNTPPSLPDLSLQISLPMSTKPNP-----PSSTTTHSGCSAKSDLSHKNNLFR-----LG 61
           M    S+PDLSLQISLP      P      SST++ SG S+ SDLSH+NN F      LG
Sbjct: 10  MRASNSVPDLSLQISLPNYHAGKPLHGGDRSSTSSDSG-SSLSDLSHENNFFNKPLLSLG 69

Query: 62  FEVGDMGLLQRHHQACNVRCR-----RDFKRSVGDVAYGVKRSPRAPRMRWTTTLHAHFI 121
           F+         HHQ  +   +     RDFKRS   +  G+KRS RAPRMRWT+TLHAHF+
Sbjct: 70  FD--------HHHQRRSNMFQPQIYGRDFKRSSSSMV-GLKRSIRAPRMRWTSTLHAHFV 129

Query: 122 HAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQV 144
           HAV+LLGGHERATPKSVLELMNVKDLTLAHVKSHLQ+
Sbjct: 130 HAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQM 156

[Close]

BLAST of Cp4.1LG06g01440 vs. TAIR 10
Match: AT1G32240.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 112.8 bits (281), Expect = 3.7e-25
Identity = 78/183 (42.62%), Postives = 98/183 (53.55%), Query Frame = 0


Query: 23  PNPPSSTTTHSGCSAKSDLSHKNNLFRLGFEVGDMGLLQRHHQACNVRCRRDFKRSVGDV 82
           P  PSS    S  S+ + L+  NN F     V +      HHQ  N        R+    
Sbjct: 154 PFDPSSLIPSSSTSSPA-LTGNNNSFNTS-SVSNPNYHNHHHQTLN--------RARFMP 213

Query: 83  AYGVKRSPRAPRMRWTTTLHAHFIHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQ 142
            +  KRS RAPRMRWTTTLHA F+HAVELLGGHERATPKSVLELM+VKDLTLAHVKSHLQ
Sbjct: 214 RFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 273

Query: 143 V-------DDSGRPELEPDAVVLSSSSSSSSSSLVTSMHKSCDRTKSNGDVFAKSRGIKV 199
           +       D +     + D     SS  ++S   +  M++    ++   +   KS G+  
Sbjct: 274 MYRTVKTTDKAAASSGQSDVYENGSSGDNNSDDWMFDMNRKSRDSEELTNPLEKSNGLWT 326

[Close]

BLAST of Cp4.1LG06g01440 vs. TAIR 10
Match: AT5G16560.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 105.9 bits (263), Expect = 4.5e-23
Identity = 62/108 (57.41%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 87  KRSPRAPRMRWTTTLHAHFIHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQV--- 146
           KRS RAPRMRWT++LHA F+HAVELLGGHERATPKSVLELM+VKDLTLAHVKSHLQ+   
Sbjct: 214 KRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 273

Query: 147 -----------DDSGRPE--LEPDAVVLSSSSSSSSSSLVTSMHKSCD 179
                      D SG  E  +  + V   SS+   + S  TS+H+  D
Sbjct: 274 VKTTNKPAASSDGSGEEEMGINGNEVHHQSSTDQRAQSDDTSLHQETD 321

[Close]

BLAST of Cp4.1LG06g01440 vs. TAIR 10
Match: AT4G17695.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 104.4 bits (259), Expect = 1.3e-22
Identity = 61/118 (51.69%), Postives = 81/118 (68.64%), Query Frame = 0


Query: 84  YGVKRSPRAPRMRWTTTLHAHFIHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQV 143
           +  KR  RAPRMRWTTTLHAHF+HAV+LLGGHERATPKSVLELM+V+DLTLAHVKSHLQ+
Sbjct: 156 FTAKRGVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQM 215

Query: 144 DDSGRPELEPDAVVLSSSSSSSSSSLVTSMHKSCDRTKSNGDVFAKSR-GIKVEGSNG 201
             + +   +P     S  S   + S V S  ++ + T    +  +++R  +K + S+G
Sbjct: 216 YRTIKSTEKP--TTSSGQSDCENGSQVNSEREARNLTGLWNNSSSEARFQLKAKASSG 271

The following BLAST results are available for this feature:

BLAST of Cp4.1LG06g01440 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJV5	9.7e-39	43.46	Probable transcription factor KAN4 OS=Arabidopsis thaliana OX=3702 GN=KAN4 PE=1 ...	[more]
Q9C616	5.2e-24	42.62	Probable transcription factor KAN2 OS=Arabidopsis thaliana OX=3702 GN=KAN2 PE=2 ...	[more]
Q0J235	9.7e-23	89.47	Probable transcription factor RL9 OS=Oryza sativa subsp. japonica OX=39947 GN=RL...	[more]
Q93WJ9	6.3e-22	57.41	Transcription repressor KAN1 OS=Arabidopsis thaliana OX=3702 GN=KAN1 PE=1 SV=1	[more]
Q941I2	1.8e-21	51.69	Probable transcription factor KAN3 OS=Arabidopsis thaliana OX=3702 GN=KAN3 PE=2 ...	[more]

BLAST of Cp4.1LG06g01440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023535459.1	4.53e-157	88.35	probable transcription factor KAN4 [Cucurbita pepo subsp. pepo]	[more]
XP_022976047.1	1.49e-151	86.19	probable transcription factor KAN4 [Cucurbita maxima]	[more]
XP_022937061.1	3.00e-148	84.64	probable transcription factor KAN4 [Cucurbita moschata]	[more]
KAG6591346.1	1.17e-145	83.90	putative transcription factor KAN4, partial [Cucurbita argyrosperma subsp. soror...	[more]
KAG7024223.1	1.27e-109	68.44	putative transcription factor KAN4, partial [Cucurbita argyrosperma subsp. argyr...	[more]

BLAST of Cp4.1LG06g01440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IEP7	7.21e-152	86.19	probable transcription factor KAN4 OS=Cucurbita maxima OX=3661 GN=LOC111476566 P...	[more]
A0A6J1F986	1.45e-148	84.64	probable transcription factor KAN4 OS=Cucurbita moschata OX=3662 GN=LOC111443475...	[more]
A0A5A7UT98	5.90e-109	68.54	Putative transcription factor KAN4 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3C0D9	5.90e-109	68.54	probable transcription factor KAN4 OS=Cucumis melo OX=3656 GN=LOC103495027 PE=4 ...	[more]
A0A0A0LFY8	3.44e-106	67.66	SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G852530 PE=4 S...	[more]

BLAST of Cp4.1LG06g01440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42630.1	6.9e-40	43.46	Homeodomain-like superfamily protein	[more]
AT5G42630.2	3.0e-35	58.60	Homeodomain-like superfamily protein	[more]
AT1G32240.1	3.7e-25	42.62	Homeodomain-like superfamily protein	[more]
AT5G16560.1	4.5e-23	57.41	Homeodomain-like superfamily protein	[more]
AT4G17695.1	1.3e-22	51.69	Homeodomain-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006447	Myb domain, plants	TIGRFAM	TIGR01557	TIGR01557	coord: 93..143 e-value: 8.9E-21 score: 72.0
None	No IPR available	GENE3D	1.10.10.60		coord: 92..145 e-value: 2.4E-23 score: 84.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 158..177
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..39
None	No IPR available	PANTHER	PTHR31496:SF25	TRANSCRIPTION FACTOR KAN4-RELATED	coord: 6..142
IPR044847	Transcription repressor KANADI	PANTHER	PTHR31496	TRANSCRIPTION FACTOR KAN2-RELATED	coord: 6..142
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 90..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG06g01440.1	Cp4.1LG06g01440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010158	abaxial cell fate specification
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000976	transcription cis-regulatory region binding
molecular_function	GO:0003677	DNA binding