Cp4.1LG05g15720 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TATCAACTTGCTTTACAAACTTGTCCAATTCGTATCCCAACTCATTACAAGTTTTCTTCCATGCTTGGAACTTCTCTATGTGTTCTATACAATACAATAGTTACAAAGCATTTGAAGTTTATGAACACATAAGTGATAAAATCCAAAGAAAAAAAGATTGCAGTTGATTTATAGCCATGGCAATCGCAAAGAACATGAAAATATGTCACAAACCCTAGTCGTCTGGGTCCCTCCCTTTCTTTTCAGATTTAACGCCTTCTCTGCGCTCCATCTTTTACTACCGCGCAGTGTCGCTGCCGCTTGCATTTCTTGACTTGTTGTCTCACTCCCTTAGATCTTCTTCCTCTCTTGATCTCAGGTACTCTTATCGGTCTCTATCTCTCTCTCTCTCTCTCATCACAGTTTCTTCCCCCCCTTCCATTGACGTGCTGGTTGGCGGGAGAAATTTAATTCCTGTTGTTTTTTTTTTTCTTCACATGTGGGATTGTTGTTGGGGTTGGTAGATAACAACTTGCGTAGTGGTTGTAGTAGTAGTTGGGCCTTGTTTATCTTTCATAAACTTTTTCAGTTTGCTATTTGGAATTGACGATCATCTATAAAATATCTTGCACCCACTTGAAAACACTGTTAGCTTGGACTAGCCTGGTCAGTTGATTATCTTCTTCACACTGTGTTCTACCAAAACCCTACATTTCGTGTTTCCTCCGTTATCATGAAGCTCGTTAGGTATGCCATTTTCTTTTATCTCCTTCAATTCTTCTTTGAAGTTTTTTTTCTTGATTTATTCATTGTTCACAACATTGAATGGTTGTTTTGATGTTAAGAAACTTTGTTTTGATGAATGGACAGGTTTTTAATGAAACTCAATAATGAGACTGTCTCAATCGAGCTTAAAAATGGAACTGTGGTCCATGGCACCATCACAGGTTTCCATCTCTCTTCCACTCGCAACATCCTCTGCATAAAACTTAGAATTAATGTGGCGAAACTAACTTAGATTTAATCTGGTGAGACCCTAGTTTTATGATTTTGCAGGCAAAGCATTTTAAAACTTCAAGTCCAATTCTATTTTCTTCATTATATTCAACTATTATCTGAAGTTGCCTAGCATTTCGGTCCAAAGTATAATTGGAATTTGAACTACACTGTCAATTTTGAGTGGTTTATGAAGTAGCATAGCATTCTTAATATCCTTAAACTACATTGATCCCTATTTGTATTGCTGTTAAATTTGATAATAATGATCTTTCACTAAAACCTATTGCATGCAATAGTAGGGTTACTATTACAAGTCTAAATTAGCTAGCAACCTCTTTTGATCTGAGTGGTAAGAGTCTGAGAGTCTTGTTGAAGGAGGATTTTGACAGCAACTATGCTACTCTGTTGTTTTTTAGGTGAAAAATAAATTTCAATCATCAATAAAATTTAAATAAATCATTGGATACTAGGTGATAAATTAGGGAGGTCAACTACTTCCCTTACTTGATGGGATTACACAAATATTCTTTGACACTCCACCTCTAGCTAAGAAATAGATATCATTCATTCTGAGCTTGGATATTAACTCATGAAGTAGTAAGTTGTAAAGTTTTTTTGTCATCCATCTATCAGATGAAGCTGTGAGAGCACGTAACTTATGCGTACTATCCCTTTGGAGCACTTCAATGGGCGTTACTGGCCTCTCTCATAATCACTTCTCTTGGAGTACTTCCATGGGCGTCACTTGCCTCTCTCGTGCTCTCTCCTCTTAGAGCACTTTCACGGGTGTCGCATGCCTCTTTCTTCTTGTAGCACTTCCACGGGCATCTCTTTCCTCTAGTGTTCTTTCCTCTTAGAGAACATTCAGGAGTGTTGCTTGACTCTCTGGTGCTCTTTCCTCAGGGAGAACTTCCATGGGCATCACTTGCCTCTCTCATGCTCATATGCTTTCTTCTCTTGGAACACTTCTATGCTGTTGCTCGTCTCTCTCGTGCTCATTCCTGTTGGAGCACTTCCATAGGTTTTGTTTGTCTCTCTGTTGCTCACTCCTGTTGGGGCACTTCCATAGGTTGCTTGCCTATCTCGTGCTCTCTCCTGTTAGAGCACTTCCACGAGCATCGCTCACCTCTCTCGTGCTCACTGCGATTATTGGCGGTACTGTCATTAATGTTGGCGGCTCATGCGACAGTGGAATACAGTGGCTGTTGGCGTGAGTGGGCAGTAGTGGACTTGATGTGATAGTGGTTTGAGGGCATTCTTGCGGCTTGGAAGCAAAAGCAGAAAGTTGGACTTACGCCTTTGCAATGGTGACCTTGCGGGACTGTGATACTCGATTGTGTGAGTTACTGTGATATACTCGGTTGAAAGCAAGAAGTAGAGCAGCGAATGGTTGGTTACTGTAATGCACAGAAGGTCGGCAACTAAGAAGGCTCTGAATGAAACTTATCACGATGGATTATCAGTGGTTATGAAGGTTTCACCGATTGAGTTAGTGGTTAGTTTTAGGCTCTGATACCATGTTGCAAAGTCTAAATTAGCTAGTAACTTCTTTTGATTTGAGCAACAAAGATAGAGTCTTATTGTCGGAGGATTTTGATGGCAGTTACGCTTTGATACCATTTGCAAGTCTTAATTAGCTTGTTATTGTTTTCGAAGTAACATTAAATCTAAATAAATCCCAGGATACTAGGTGAAAAATTGGGGAGGTTAACTACTTCTCTTATTTAATGGGATTACACAAATATTCTTCAACACTCCCCCTCAAGCTGAGAAATAGATATCATTCTTTCTCAGCTTAGACGCTAACTCATGAATTACACAATATCTCTTAAGGCTAATTCTTCGACAACTACTTTAAAGTTTAGTATGTGACTAGTGCACAACTCCCTGACCTATAGAGGCTTCTAGATTTTTCAAAGATATGTTTCACAGAGGAACATTGCAATTGTCTTTACCTCATCTCTCTCCCCCAACCTCTGCCTTTCCACATCGATCATGGATCACCTAGTCTCCATCAAGCTTTCTAGCAAAAGTAGAAAGGACTAACCCTCCCCATTCCTCCATGATTGAAAGAAGGCTCTAGACCATTGAGATTGGCGATAGATAGGCTCTCGAGCACAATTGAGTTTACATAATTAACCACTCAGTGAGTTTGCCCGTTCTGAGACTCTTGAGGCAATTAGAATATTATAATTTTAGTTGGTTACATCTTCTGTTGGAGAATTTTTTTTCACTCGAGACAACTAGCATCCGTCTATAAAACAATATGTTTGCACAAATACTTCTGAAACATATGTTATTTAGATGACTTGCATAGAGAGGGAGACTAACACCAGATCGCACCGCAGCTGCTAAGTTTAGATATTGTAATATTCGATCACATTGCATGACCGTAAAGTAGATTCTGCACGTATTCTTTTTACTTTCTGTTAAGTTCTGGTCAAGTATAGTTCTGACAGGATAATTTTCTTGTATTACTTAGGTGTGGATATTAGCATGAATACACATTTGAAGGCTGTGAAACTTACCCTAAAGGGGAAAAATCCCATTACCATGGATCATTTAAGTGTGAGGGGTAACAGCATCAGATATTATATTCTCCCTGACAGCTTGAATCTCGAGACTTTACTTGTTGAAGAGACAACCAGGGTCAAGCCCAAGAAACCAACTGCAGGTATGCGTTGTTCTTGTATTCTGGCTTGTGCATCAATCCCTGCAACTGCTTATGTATTTGTTTTCCTCTTCTGCAACTGTAGGGAAGCCTTTGGGACGGGGGCGTGGACGGGGGCGGGGGCGTGGTCGGGGGCGAGGGCGCTAGACTAGCTGCAGCTTCAATTTTTGTGCCATGTAGTCTTGCCATGTATTTCTGGAAGTTTATAAAATTAGTGAAGTGGAGAATGACAATTCACTGTTTTT TATCAACTTGCTTTACAAACTTGTCCAATTCGTATCCCAACTCATTACAAGTTTTCTTCCATGCTTGGAACTTCTCTATGTGTTCTATACAATACAATAGTTACAAAGCATTTGAAGTTTATGAACACATAAGTGATAAAATCCAAAGAAAAAAAGATTGCAGTTGATTTATAGCCATGGCAATCGCAAAGAACATGAAAATATGTCACAAACCCTAGTCGTCTGGGTCCCTCCCTTTCTTTTCAGATTTAACGCCTTCTCTGCGCTCCATCTTTTACTACCGCGCAGTGTCGCTGCCGCTTGCATTTCTTGACTTGTTGTCTCACTCCCTTAGATCTTCTTCCTCTCTTGATCTCAGGTACTCTTATCGGTCTCTATCTCTCTCTCTCTCTCTCATCACAGTTTCTTCCCCCCCTTCCATTGACGTGCTGGTTGGCGGGAGAAATTTAATTCCTGTTGTTTTTTTTTTTCTTCACATGTGGGATTGTTGTTGGGGTTGGTAGATAACAACTTGCGTAGTGGTTGTAGTAGTAGTTGGGCCTTGTTTATCTTTCATAAACTTTTTCAGTTTGCTATTTGGAATTGACGATCATCTATAAAATATCTTGCACCCACTTGAAAACACTGTTAGCTTGGACTAGCCTGGTCAGTTGATTATCTTCTTCACACTGTGTTCTACCAAAACCCTACATTTCGTGTTTCCTCCGTTATCATGAAGCTCGTTAGGTTTTTAATGAAACTCAATAATGAGACTGTCTCAATCGAGCTTAAAAATGGAACTGTGGTCCATGGCACCATCACAGGTGTGGATATTAGCATGAATACACATTTGAAGGCTGTGAAACTTACCCTAAAGGGGAAAAATCCCATTACCATGGATCATTTAAGTGTGAGGGGTAACAGCATCAGATATTATATTCTCCCTGACAGCTTGAATCTCGAGACTTTACTTGTTGAAGAGACAACCAGGGTCAAGCCCAAGAAACCAACTGCAGGGAAGCCTTTGGGACGGGGGCGTGGACGGGGGCGGGGGCGTGGTCGGGGGCGAGGGCGCTAGACTAGCTGCAGCTTCAATTTTTGTGCCATGTAGTCTTGCCATGTATTTCTGGAAGTTTATAAAATTAGTGAAGTGGAGAATGACAATTCACTGTTTTT ATGAAGCTCGTTAGGTTTTTAATGAAACTCAATAATGAGACTGTCTCAATCGAGCTTAAAAATGGAACTGTGGTCCATGGCACCATCACAGGTGTGGATATTAGCATGAATACACATTTGAAGGCTGTGAAACTTACCCTAAAGGGGAAAAATCCCATTACCATGGATCATTTAAGTGTGAGGGGTAACAGCATCAGATATTATATTCTCCCTGACAGCTTGAATCTCGAGACTTTACTTGTTGAAGAGACAACCAGGGTCAAGCCCAAGAAACCAACTGCAGGGAAGCCTTTGGGACGGGGGCGTGGACGGGGGCGGGGGCGTGGTCGGGGGCGAGGGCGCTAG MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSVRGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGRGRGRGRGRGRGR Homology
BLAST of Cp4.1LG05g15720 vs. ExPASy Swiss-Prot
Match: Q9SY09 (Small nuclear ribonucleoprotein SmD1b OS=Arabidopsis thaliana OX=3702 GN=SMD1B PE=3 SV=1) HSP 1 Score: 201.4 bits (511), Expect = 5.3e-51 Identity = 104/114 (91.23%), Postives = 111/114 (97.37%), Query Frame = 0
BLAST of Cp4.1LG05g15720 vs. ExPASy Swiss-Prot
Match: Q9SSF1 (Small nuclear ribonucleoprotein SmD1a OS=Arabidopsis thaliana OX=3702 GN=SMD1A PE=3 SV=1) HSP 1 Score: 199.1 bits (505), Expect = 2.6e-50 Identity = 101/114 (88.60%), Postives = 110/114 (96.49%), Query Frame = 0
BLAST of Cp4.1LG05g15720 vs. ExPASy Swiss-Prot
Match: Q3ZC10 (Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus OX=9913 GN=SNRPD1 PE=3 SV=1) HSP 1 Score: 156.0 bits (393), Expect = 2.6e-37 Identity = 83/114 (72.81%), Postives = 98/114 (85.96%), Query Frame = 0
BLAST of Cp4.1LG05g15720 vs. ExPASy Swiss-Prot
Match: P62314 (Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens OX=9606 GN=SNRPD1 PE=1 SV=1) HSP 1 Score: 156.0 bits (393), Expect = 2.6e-37 Identity = 83/114 (72.81%), Postives = 98/114 (85.96%), Query Frame = 0
BLAST of Cp4.1LG05g15720 vs. ExPASy Swiss-Prot
Match: Q4R5F6 (Small nuclear ribonucleoprotein Sm D1 OS=Macaca fascicularis OX=9541 GN=SNRPD1 PE=3 SV=1) HSP 1 Score: 156.0 bits (393), Expect = 2.6e-37 Identity = 83/114 (72.81%), Postives = 98/114 (85.96%), Query Frame = 0
BLAST of Cp4.1LG05g15720 vs. NCBI nr
Match: XP_022947377.1 (small nuclear ribonucleoprotein SmD1b-like [Cucurbita moschata] >XP_022970690.1 small nuclear ribonucleoprotein SmD1b-like [Cucurbita maxima] >XP_023532066.1 small nuclear ribonucleoprotein SmD1b-like [Cucurbita pepo subsp. pepo] >XP_023532067.1 small nuclear ribonucleoprotein SmD1b-like [Cucurbita pepo subsp. pepo] >KAG6604704.1 Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034835.1 Small nuclear ribonucleoprotein SmD1b [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 215 bits (548), Expect = 3.17e-70 Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0
BLAST of Cp4.1LG05g15720 vs. NCBI nr
Match: XP_022931093.1 (small nuclear ribonucleoprotein SmD1b [Cucurbita moschata] >XP_022995872.1 small nuclear ribonucleoprotein SmD1b [Cucurbita maxima] >XP_023533992.1 small nuclear ribonucleoprotein SmD1b [Cucurbita pepo subsp. pepo] >KAG7036369.1 Small nuclear ribonucleoprotein SmD1b [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 211 bits (538), Expect = 1.06e-68 Identity = 111/114 (97.37%), Postives = 113/114 (99.12%), Query Frame = 0
BLAST of Cp4.1LG05g15720 vs. NCBI nr
Match: XP_022963993.1 (small nuclear ribonucleoprotein SmD1b-like [Cucurbita moschata] >XP_023553601.1 small nuclear ribonucleoprotein SmD1b-like [Cucurbita pepo subsp. pepo] >KAG7011241.1 Small nuclear ribonucleoprotein SmD1b [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 211 bits (536), Expect = 2.15e-68 Identity = 110/114 (96.49%), Postives = 113/114 (99.12%), Query Frame = 0
BLAST of Cp4.1LG05g15720 vs. NCBI nr
Match: XP_004150106.1 (small nuclear ribonucleoprotein SmD1b [Cucumis sativus] >XP_008454659.1 PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Cucumis melo] >XP_022155676.1 small nuclear ribonucleoprotein SmD1b [Momordica charantia] >XP_022157762.1 small nuclear ribonucleoprotein SmD1b [Momordica charantia] >XP_022157763.1 small nuclear ribonucleoprotein SmD1b [Momordica charantia] >XP_038896755.1 small nuclear ribonucleoprotein SmD1b isoform X1 [Benincasa hispida] >XP_038897023.1 small nuclear ribonucleoprotein SmD1b isoform X1 [Benincasa hispida] >KGN59890.1 hypothetical protein Csa_002314 [Cucumis sativus]) HSP 1 Score: 210 bits (535), Expect = 3.05e-68 Identity = 110/114 (96.49%), Postives = 113/114 (99.12%), Query Frame = 0
BLAST of Cp4.1LG05g15720 vs. NCBI nr
Match: XP_012473940.1 (PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Gossypium raimondii] >XP_017624320.1 PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Gossypium arboreum] >XP_028086932.1 small nuclear ribonucleoprotein SmD1a [Camellia sinensis] >XP_040955759.1 small nuclear ribonucleoprotein SmD1a-like [Gossypium hirsutum] >KAA3471122.1 small nuclear ribonucleoprotein Sm D1-like [Gossypium australe] >KAB2016212.1 hypothetical protein ES319_D08G080300v1 [Gossypium barbadense] >MBA0762809.1 hypothetical protein [Gossypium trilobum] >TYI68344.1 hypothetical protein E1A91_D08G082500v1 [Gossypium mustelinum] >KAG4133137.1 hypothetical protein ERO13_D08G076900v2 [Gossypium hirsutum]) HSP 1 Score: 210 bits (534), Expect = 4.33e-68 Identity = 110/114 (96.49%), Postives = 112/114 (98.25%), Query Frame = 0
BLAST of Cp4.1LG05g15720 vs. ExPASy TrEMBL
Match: A0A6J1I3K7 (Small nuclear ribonucleoprotein Sm D1 OS=Cucurbita maxima OX=3661 GN=LOC111469600 PE=3 SV=1) HSP 1 Score: 215 bits (548), Expect = 1.54e-70 Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0
BLAST of Cp4.1LG05g15720 vs. ExPASy TrEMBL
Match: A0A6J1G6A2 (Small nuclear ribonucleoprotein Sm D1 OS=Cucurbita moschata OX=3662 GN=LOC111451260 PE=3 SV=1) HSP 1 Score: 215 bits (548), Expect = 1.54e-70 Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0
BLAST of Cp4.1LG05g15720 vs. ExPASy TrEMBL
Match: A0A6J1K070 (Small nuclear ribonucleoprotein Sm D1 OS=Cucurbita maxima OX=3661 GN=LOC111491270 PE=3 SV=1) HSP 1 Score: 211 bits (538), Expect = 5.15e-69 Identity = 111/114 (97.37%), Postives = 113/114 (99.12%), Query Frame = 0
BLAST of Cp4.1LG05g15720 vs. ExPASy TrEMBL
Match: A0A6J1EXE6 (Small nuclear ribonucleoprotein Sm D1 OS=Cucurbita moschata OX=3662 GN=LOC111437383 PE=3 SV=1) HSP 1 Score: 211 bits (538), Expect = 5.15e-69 Identity = 111/114 (97.37%), Postives = 113/114 (99.12%), Query Frame = 0
BLAST of Cp4.1LG05g15720 vs. ExPASy TrEMBL
Match: A0A6J1HJI3 (Small nuclear ribonucleoprotein Sm D1 OS=Cucurbita moschata OX=3662 GN=LOC111464127 PE=3 SV=1) HSP 1 Score: 211 bits (536), Expect = 1.04e-68 Identity = 110/114 (96.49%), Postives = 113/114 (99.12%), Query Frame = 0
BLAST of Cp4.1LG05g15720 vs. TAIR 10
Match: AT4G02840.1 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 201.4 bits (511), Expect = 3.8e-52 Identity = 104/114 (91.23%), Postives = 111/114 (97.37%), Query Frame = 0
BLAST of Cp4.1LG05g15720 vs. TAIR 10
Match: AT3G07590.1 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 199.1 bits (505), Expect = 1.9e-51 Identity = 101/114 (88.60%), Postives = 110/114 (96.49%), Query Frame = 0
BLAST of Cp4.1LG05g15720 vs. TAIR 10
Match: AT3G07590.2 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 199.1 bits (505), Expect = 1.9e-51 Identity = 101/114 (88.60%), Postives = 110/114 (96.49%), Query Frame = 0
BLAST of Cp4.1LG05g15720 vs. TAIR 10
Match: AT4G02840.2 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 193.4 bits (490), Expect = 1.0e-49 Identity = 104/124 (83.87%), Postives = 111/124 (89.52%), Query Frame = 0
BLAST of Cp4.1LG05g15720 vs. TAIR 10
Match: AT5G27720.1 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 53.5 bits (127), Expect = 1.3e-07 Identity = 40/98 (40.82%), Postives = 51/98 (52.04%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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