Cp4.1LG05g13650 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG05g13650
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	DUF1279 domain-containing protein
Location	Cp4.1LG05: 9613853 .. 9614311 (-)
RNA-Seq Expression	Cp4.1LG05g13650
Synteny	Cp4.1LG05g13650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTCTTCACCGGTGGTGGCCGATTCCGCGAGCTTCTCAGGAAGTACGGGAAGGTCGCAATCGGAGTTCATTTCTCAGTGTCGTCGGCTTCGATCACTGGCCTCTATGTCGCCATCAAGAACAATGTTGATGTAGAATCGCTACTCGATAAGCTACACATGGACGGATTCTCTTCCAAAGATACGCCACAGACAAGTCCCTCCGAAATCACATCGTCCGTAGACGATGGATTTGTGATCGAAGAAAGACCTACATCAGAAATTCAATCAACCGTAATGGAAGAGCCGCGGAAAAGGAATCGTACAGCCGAGCTCGCAGCGTCGACTGGCGGCGCGTTGGCTTTGGCCGTGCTTTGCAACAAGGCATTGTTGCCGATTCGGGTTCCGATCACGATTGCGCTCACACCGCCGATCGCGAGGCTGCTGGCGAGGCGAGGAATTATGAGAAGTGGTTAA

mRNA sequence

ATGGCTTTCTTCACCGGTGGTGGCCGATTCCGCGAGCTTCTCAGGAAGTACGGGAAGGTCGCAATCGGAGTTCATTTCTCAGTGTCGTCGGCTTCGATCACTGGCCTCTATGTCGCCATCAAGAACAATGTTGATGTAGAATCGCTACTCGATAAGCTACACATGGACGGATTCTCTTCCAAAGATACGCCACAGACAAGTCCCTCCGAAATCACATCGTCCGTAGACGATGGATTTGTGATCGAAGAAAGACCTACATCAGAAATTCAATCAACCGTAATGGAAGAGCCGCGGAAAAGGAATCGTACAGCCGAGCTCGCAGCGTCGACTGGCGGCGCGTTGGCTTTGGCCGTGCTTTGCAACAAGGCATTGTTGCCGATTCGGGTTCCGATCACGATTGCGCTCACACCGCCGATCGCGAGGCTGCTGGCGAGGCGAGGAATTATGAGAAGTGGTTAA

Coding sequence (CDS)

ATGGCTTTCTTCACCGGTGGTGGCCGATTCCGCGAGCTTCTCAGGAAGTACGGGAAGGTCGCAATCGGAGTTCATTTCTCAGTGTCGTCGGCTTCGATCACTGGCCTCTATGTCGCCATCAAGAACAATGTTGATGTAGAATCGCTACTCGATAAGCTACACATGGACGGATTCTCTTCCAAAGATACGCCACAGACAAGTCCCTCCGAAATCACATCGTCCGTAGACGATGGATTTGTGATCGAAGAAAGACCTACATCAGAAATTCAATCAACCGTAATGGAAGAGCCGCGGAAAAGGAATCGTACAGCCGAGCTCGCAGCGTCGACTGGCGGCGCGTTGGCTTTGGCCGTGCTTTGCAACAAGGCATTGTTGCCGATTCGGGTTCCGATCACGATTGCGCTCACACCGCCGATCGCGAGGCTGCTGGCGAGGCGAGGAATTATGAGAAGTGGTTAA

Protein sequence

MAFFTGGGRFRELLRKYGKVAIGVHFSVSSASITGLYVAIKNNVDVESLLDKLHMDGFSSKDTPQTSPSEITSSVDDGFVIEERPTSEIQSTVMEEPRKRNRTAELAASTGGALALAVLCNKALLPIRVPITIALTPPIARLLARRGIMRSG

Homology

[Close]

BLAST of Cp4.1LG05g13650 vs. NCBI nr
Match: XP_023533856.1 (uncharacterized protein LOC111795580 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 286 bits (732), Expect = 4.64e-97
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSSASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELLRKYGKVAIGVHFSVSSASITGLYVAIKNNVDVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSSASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDTPQTSPSEITSSVDDGFVIEERPTSEIQSTVMEEPRKRNRTAELAASTGGALALAVLC 120
           KDTPQTSPSEITSSVDDGFVIEERPTSEIQSTVMEEPRKRNRTAELAASTGGALALAVLC
Sbjct: 61  KDTPQTSPSEITSSVDDGFVIEERPTSEIQSTVMEEPRKRNRTAELAASTGGALALAVLC 120

Query: 121 NKALLPIRVPITIALTPPIARLLARRGIMRSG 152
           NKALLPIRVPITIALTPPIARLLARRGIMRSG
Sbjct: 121 NKALLPIRVPITIALTPPIARLLARRGIMRSG 152

[Close]

BLAST of Cp4.1LG05g13650 vs. NCBI nr
Match: XP_022947464.1 (uncharacterized protein LOC111451320 [Cucurbita moschata] >KAG7027024.1 hypothetical protein SDJN02_11032, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 282 bits (722), Expect = 1.55e-95
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSSASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELLRKYGKVAIGVHFSVS+ASITGLYVAIKNNVDVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDTPQTSPSEITSSVDDGFVIEERPTSEIQSTVMEEPRKRNRTAELAASTGGALALAVLC 120
           KDTPQTSPSEITSSVDDGFVIEERPTS IQSTVMEEPRKRNRTAELAASTGGALALAVLC
Sbjct: 61  KDTPQTSPSEITSSVDDGFVIEERPTSGIQSTVMEEPRKRNRTAELAASTGGALALAVLC 120

Query: 121 NKALLPIRVPITIALTPPIARLLARRGIMRSG 152
           NKALLPIRVPITIALTPPIARLLARRGIMRSG
Sbjct: 121 NKALLPIRVPITIALTPPIARLLARRGIMRSG 152

[Close]

BLAST of Cp4.1LG05g13650 vs. NCBI nr
Match: XP_022971121.1 (uncharacterized protein LOC111469888 [Cucurbita maxima])

HSP 1 Score: 278 bits (712), Expect = 5.20e-94
Identity = 147/152 (96.71%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSSASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELLRKYGKVAIGVHFSVS+ASITGLYVAIKNNVDVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDTPQTSPSEITSSVDDGFVIEERPTSEIQSTVMEEPRKRNRTAELAASTGGALALAVLC 120
           KDTPQTSPSEIT SVDDGFVIEERPTS IQSTV+EEPRKRNRTAELAASTGGALALAVLC
Sbjct: 61  KDTPQTSPSEITPSVDDGFVIEERPTSGIQSTVVEEPRKRNRTAELAASTGGALALAVLC 120

Query: 121 NKALLPIRVPITIALTPPIARLLARRGIMRSG 152
           NKALLPIR+PITIALTPPIARLLARRGIMRSG
Sbjct: 121 NKALLPIRIPITIALTPPIARLLARRGIMRSG 152

[Close]

BLAST of Cp4.1LG05g13650 vs. NCBI nr
Match: KAG6604946.1 (hypothetical protein SDJN03_02263, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 277 bits (709), Expect = 1.49e-93
Identity = 147/152 (96.71%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSSASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELLRKYGKVAIGVHFSVS+ASITGLYVAIKNN+DVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNIDVESLLDKLHMDGFSS 60

Query: 61  KDTPQTSPSEITSSVDDGFVIEERPTSEIQSTVMEEPRKRNRTAELAASTGGALALAVLC 120
           KDTPQTSPSEITSSVDDGFVIEERPTS IQSTV+EEPR RNRTAELAASTGGALALAVLC
Sbjct: 61  KDTPQTSPSEITSSVDDGFVIEERPTSGIQSTVVEEPRIRNRTAELAASTGGALALAVLC 120

Query: 121 NKALLPIRVPITIALTPPIARLLARRGIMRSG 152
           NKALLPIRVPITIALTPPIARLLARRGIMRSG
Sbjct: 121 NKALLPIRVPITIALTPPIARLLARRGIMRSG 152

[Close]

BLAST of Cp4.1LG05g13650 vs. NCBI nr
Match: XP_022146083.1 (uncharacterized protein LOC111015379 [Momordica charantia])

HSP 1 Score: 265 bits (677), Expect = 1.13e-88
Identity = 139/152 (91.45%), Postives = 145/152 (95.39%), Query Frame = 0


Query: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSSASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELLRKYGKVAIGVHFSVS+ASITGLYVAIKNNVDVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDTPQTSPSEITSSVDDGFVIEERPTSEIQSTVMEEPRKRNRTAELAASTGGALALAVLC 120
           KD PQT PSE TSS DDGFVIEERP SE QST ++EPR+RNRTAELAASTGGALALAVLC
Sbjct: 61  KDQPQTIPSESTSSADDGFVIEERPVSENQSTAVQEPRRRNRTAELAASTGGALALAVLC 120

Query: 121 NKALLPIRVPITIALTPPIARLLARRGIMRSG 152
           NKALLPIR+PITIALTPPI+RLLARRGIMRSG
Sbjct: 121 NKALLPIRIPITIALTPPISRLLARRGIMRSG 152

[Close]

BLAST of Cp4.1LG05g13650 vs. ExPASy TrEMBL
Match: A0A6J1G6W3 (uncharacterized protein LOC111451320 OS=Cucurbita moschata OX=3662 GN=LOC111451320 PE=4 SV=1)

HSP 1 Score: 282 bits (722), Expect = 7.53e-96
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSSASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELLRKYGKVAIGVHFSVS+ASITGLYVAIKNNVDVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDTPQTSPSEITSSVDDGFVIEERPTSEIQSTVMEEPRKRNRTAELAASTGGALALAVLC 120
           KDTPQTSPSEITSSVDDGFVIEERPTS IQSTVMEEPRKRNRTAELAASTGGALALAVLC
Sbjct: 61  KDTPQTSPSEITSSVDDGFVIEERPTSGIQSTVMEEPRKRNRTAELAASTGGALALAVLC 120

Query: 121 NKALLPIRVPITIALTPPIARLLARRGIMRSG 152
           NKALLPIRVPITIALTPPIARLLARRGIMRSG
Sbjct: 121 NKALLPIRVPITIALTPPIARLLARRGIMRSG 152

[Close]

BLAST of Cp4.1LG05g13650 vs. ExPASy TrEMBL
Match: A0A6J1I2F7 (uncharacterized protein LOC111469888 OS=Cucurbita maxima OX=3661 GN=LOC111469888 PE=4 SV=1)

HSP 1 Score: 278 bits (712), Expect = 2.52e-94
Identity = 147/152 (96.71%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSSASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELLRKYGKVAIGVHFSVS+ASITGLYVAIKNNVDVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDTPQTSPSEITSSVDDGFVIEERPTSEIQSTVMEEPRKRNRTAELAASTGGALALAVLC 120
           KDTPQTSPSEIT SVDDGFVIEERPTS IQSTV+EEPRKRNRTAELAASTGGALALAVLC
Sbjct: 61  KDTPQTSPSEITPSVDDGFVIEERPTSGIQSTVVEEPRKRNRTAELAASTGGALALAVLC 120

Query: 121 NKALLPIRVPITIALTPPIARLLARRGIMRSG 152
           NKALLPIR+PITIALTPPIARLLARRGIMRSG
Sbjct: 121 NKALLPIRIPITIALTPPIARLLARRGIMRSG 152

[Close]

BLAST of Cp4.1LG05g13650 vs. ExPASy TrEMBL
Match: A0A6J1CXM4 (uncharacterized protein LOC111015379 OS=Momordica charantia OX=3673 GN=LOC111015379 PE=4 SV=1)

HSP 1 Score: 265 bits (677), Expect = 5.47e-89
Identity = 139/152 (91.45%), Postives = 145/152 (95.39%), Query Frame = 0


Query: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSSASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELLRKYGKVAIGVHFSVS+ASITGLYVAIKNNVDVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDTPQTSPSEITSSVDDGFVIEERPTSEIQSTVMEEPRKRNRTAELAASTGGALALAVLC 120
           KD PQT PSE TSS DDGFVIEERP SE QST ++EPR+RNRTAELAASTGGALALAVLC
Sbjct: 61  KDQPQTIPSESTSSADDGFVIEERPVSENQSTAVQEPRRRNRTAELAASTGGALALAVLC 120

Query: 121 NKALLPIRVPITIALTPPIARLLARRGIMRSG 152
           NKALLPIR+PITIALTPPI+RLLARRGIMRSG
Sbjct: 121 NKALLPIRIPITIALTPPISRLLARRGIMRSG 152

[Close]

BLAST of Cp4.1LG05g13650 vs. ExPASy TrEMBL
Match: A0A6J1JD52 (uncharacterized protein LOC111483951 OS=Cucurbita maxima OX=3661 GN=LOC111483951 PE=4 SV=1)

HSP 1 Score: 256 bits (654), Expect = 1.75e-85
Identity = 135/152 (88.82%), Postives = 140/152 (92.11%), Query Frame = 0


Query: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSSASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELL+KYGKVAIGVHFSVS+ASITGLYVAIKNNVDVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDTPQTSPSEITSSVDDGFVIEERPTSEIQSTVMEEPRKRNRTAELAASTGGALALAVLC 120
           KD  QTSP E  SSVDDG VIEE P SE QSTV +EPR RNRTAELAASTGGALALAVLC
Sbjct: 61  KDQSQTSPGETASSVDDGLVIEESPASETQSTVAQEPRTRNRTAELAASTGGALALAVLC 120

Query: 121 NKALLPIRVPITIALTPPIARLLARRGIMRSG 152
           NKALLPIR+PITI LTPPIAR+LARRGIMRSG
Sbjct: 121 NKALLPIRIPITIGLTPPIARMLARRGIMRSG 152

[Close]

BLAST of Cp4.1LG05g13650 vs. ExPASy TrEMBL
Match: A0A6J1FU56 (uncharacterized protein LOC111448454 OS=Cucurbita moschata OX=3662 GN=LOC111448454 PE=4 SV=1)

HSP 1 Score: 244 bits (624), Expect = 5.18e-81
Identity = 131/152 (86.18%), Postives = 137/152 (90.13%), Query Frame = 0


Query: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSSASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELL+KYGKVAIGVHFSVS+ASITGLYVAIKNNVDVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDTPQTSPSEITSSVDDGFVIEERPTSEIQSTVMEEPRKRNRTAELAASTGGALALAVLC 120
           KD  QTSP       DDG VIEE P S+IQSTV +EPR RNRTAELAASTGGALALAVLC
Sbjct: 61  KDQSQTSP-------DDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGGALALAVLC 120

Query: 121 NKALLPIRVPITIALTPPIARLLARRGIMRSG 152
           NKALLPIR+PITI LTPPIAR+LARRGIMRSG
Sbjct: 121 NKALLPIRIPITIGLTPPIARMLARRGIMRSG 145

[Close]

BLAST of Cp4.1LG05g13650 vs. TAIR 10
Match: AT2G20940.1 (Protein of unknown function (DUF1279) )

HSP 1 Score: 137.5 bits (345), Expect = 8.9e-33
Identity = 79/144 (54.86%), Postives = 99/144 (68.75%), Query Frame = 0


Query: 9   RFRELLRKYGKVAIGVHFSVSSASITGLYVAIKNNVDVESLLDKLHMDGFSSKDTPQTSP 68
           R +E+++KYGKVA+GVHFSVS  SI+G Y+AIKNNVDVESLL+K  +  FSSK+ P  +P
Sbjct: 4   RLKEIVKKYGKVALGVHFSVSGVSISGFYIAIKNNVDVESLLEKYQIPWFSSKENP--NP 63

Query: 69  SEITSSVDDGFVIEERPTSEIQSTVMEEPRKRNRTAELAASTGGALALAVLCNKALLPIR 128
           S      + G V  +                 N+T +LA S GGALALAVLCNKAL PIR
Sbjct: 64  SLDLKLEEQGSVTSD-----------------NKTKQLAKSAGGALALAVLCNKALFPIR 123

Query: 129 VPITIALTPPIARLLARRGIMRSG 153
           VPIT+ALTPPIAR L +R I+++G
Sbjct: 124 VPITMALTPPIARFLRQRKILKTG 128

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g13650 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG05g13650 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023533856.1	4.64e-97	100.00	uncharacterized protein LOC111795580 [Cucurbita pepo subsp. pepo]	[more]
XP_022947464.1	1.55e-95	98.68	uncharacterized protein LOC111451320 [Cucurbita moschata] >KAG7027024.1 hypothet...	[more]
XP_022971121.1	5.20e-94	96.71	uncharacterized protein LOC111469888 [Cucurbita maxima]	[more]
KAG6604946.1	1.49e-93	96.71	hypothetical protein SDJN03_02263, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022146083.1	1.13e-88	91.45	uncharacterized protein LOC111015379 [Momordica charantia]	[more]

BLAST of Cp4.1LG05g13650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G6W3	7.53e-96	98.68	uncharacterized protein LOC111451320 OS=Cucurbita moschata OX=3662 GN=LOC1114513...	[more]
A0A6J1I2F7	2.52e-94	96.71	uncharacterized protein LOC111469888 OS=Cucurbita maxima OX=3661 GN=LOC111469888...	[more]
A0A6J1CXM4	5.47e-89	91.45	uncharacterized protein LOC111015379 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A6J1JD52	1.75e-85	88.82	uncharacterized protein LOC111483951 OS=Cucurbita maxima OX=3661 GN=LOC111483951...	[more]
A0A6J1FU56	5.18e-81	86.18	uncharacterized protein LOC111448454 OS=Cucurbita moschata OX=3662 GN=LOC1114484...	[more]

BLAST of Cp4.1LG05g13650 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20940.1	8.9e-33	54.86	Protein of unknown function (DUF1279)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009688	Protein FAM210A/B-like domain	PFAM	PF06916	DUF1279	coord: 9..137 e-value: 3.8E-26 score: 91.5
None	No IPR available	PANTHER	PTHR21377	UNCHARACTERIZED	coord: 8..150
None	No IPR available	PANTHER	PTHR21377:SF0	PROTEIN FAM210B, MITOCHONDRIAL	coord: 8..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g13650.1	Cp4.1LG05g13650.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion