Cp4.1LG05g11580 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG05g11580
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionE3 ubiquitin-protein ligase RNF38-like
LocationCp4.1LG05: 7782014 .. 7793365 (-)
RNA-Seq ExpressionCp4.1LG05g11580
SyntenyCp4.1LG05g11580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CACTTGCAACGGCACCGTGGCTTCCGACCAGCAACCCATGCAGCTCCTGGAGCTCCGACTCGGAAATTCGACCCATCTGATTTCTCGATCTTCTCGCCAAATTCTCCAACAAACTCCCACAACCCCAATGGGCGATGCTCTGTTTCCTTTTGTTCTGCGCGACCTCCAACACCCACCCTTCCTCTCCAACTGCTATGTTCTTCAGTTTTTGTCTTCCTTCAGCATCCCCATCGCCGCCTGCGACATCATCTATGAAGAGATCTCCTCGTTTGCGCTTCAATTGGCCGCCGGCAACGTGGATCTCAACTTCCACATCGTCGTCGAAGTGGATGTCATCGAAATGATATGGGTGGACCTGGACCCATTCCTTGTTGAAGAATATTCTCCGGCTGAGATGAACGGGGCGCCGGCGTCGGCGATTGAGAGGTTGCAGAGGCAGGAATTTGATGGGTTAAGGGAGGAAGAGGAGGAGGGGGATTGCAGTGTTTGTTGCGAAGCGCTGAAGGGAGAAGAGGAGGTGAGTAGAATCCCGTGTGGTCATGTGTATCACAAATGCTGTATTCTCAAGTGGCTTCAGATGAGCAATTCGTGTCCTCTCTGTAGAACCAAATTAGAACAATAATTCTTTTTTTCTTTTTTAAGAATTACGGAAAATGTAATTCTGGTTTTTGTGCAACAATTTCGTTGCAGATGATTGTAATTAGATTAATGACAGTGACAACAAATTTTACATTTTTTGTCAGTTGATTCAACATTAATTAATGTAACTCTATACTTCCATTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTGATGAATTGTATGTCGTATGAATAACACATTGTGTGGTTTATTTGTGTTATTACTTGTTCAAGCCATATTTATGAACCTTTTGTGATGCATATACTTTGAGTATGTCAATCCACGTATACTATGATATTATGTTCACGTTATGTCCTATAAAACACTCGATGAGTCATGTATGATAGAATGAATGATTTGTCATTTACATCTAGGAATGTTGTCATAAAAAGTATAAATATGACTTGCATAATAACCATATACCATGATTTAAAAATGAGACCTAGTGGTGTTTGTCATGAGCACCAAATACTTCTCTAGTATATTTTGTAAGGACGCATACATCATGATATGTTACACACTCCTTTCTTTTGGTTGGTTTTCGACAACATGAGTGTACACTGTCCTGTAGTTAGGCTTAGGGGTACATATACGATCTCGTTTAGTTTGGATTGTTCAAAAAATCACATGACTCAAAAAAAAATTTGATAAATATCACATAACCAGTATGGTTTGGGTTGGGTTGAAATATGTAACTATTAAAAAAAAAAAAAAACTTGGTCGCTGAAAAAGGCTCGAGGCGGTGGAATTCTCGCACCCTCCATCGTTCACGCTTCCCCAGATGCCCACAACACACCAAAACTTTCACACGCTCTTCACGCCTAAATCCTAAACCTTAAACCCTAAACTTTCACACGCTCTAAAACAATGACTCAGAAGGTAAGTCTTTCATGTTTCATGCCTTCAGCAACGTCATTCCCTCGATGCTGGCGAGATCTGAAATATGAGAATTTGGAAACGCCGGCGAGATCGGTCCCTTAACGATCAGCGACCGAGGGTTCAAATTCGGGCTACAGCGTACGGAGGAGAGAGACTTGGACGAAAAATCGCATTAATCGGGTAAGGAAGACAATTTTCCGGGTCGGATTCTGATGCGGATCGGGTGCCCAACTAACAACCCAGCTTCGGCCCAAACATCTACAACCCAATCACCTGCAGTCTCGGCCTAGATGCTTGCAACCTCGGCCCATACACCTGCAATGGTCCAAAACCAATTCAGCTAAGTCTAGCCCAGCCTCGCGGCCCGCAACCCGCGCGCCTGCATCAGCGACCCGACAACCCACGCTTCGACTCGACTACGACTTGCACACGCGTCACCTCCTTCAAGGGACACGTGTCACACCTACAACTAGCGACTCCCTCAGCTGGTGCAGCTTAGTGGATTCGGCTCGGCTCCTCGACTTAGTTTTTTGGATCGGTAAAGGGATTTTTTTTTGACAAATTCTATCGTTTCGACCATTTCAAAGCTGAAATTGACATTGTTTAATGAAATTAAGGTCAGTATAGGTTTAATCTCTCGGTTTAAGTTAATTTGAGCTTAGAAATTTGAGTTATTAATGTAATGAGATGGACGAATTGGAAACAACTACCGACAGTACTTTGGGGGATGAAATTCAAACATACTTGAAATTAGGGAGAACGTCGACTAAGGTCAACCAAGTAAATGACCTTACTGTCGGTTTTGTTATAACTTGTATGTAGTATGACGGCACATGCCCCCTAACTTTGCATGTGTCATATGCATGTTATGAAATGATATGTTTATGATATTATAGGTGAATGAGATGATACATGTTATGAAATGATATGTTATGATATGATATGTCTAACGACATGTTCCTCATATTATACACGAGTGTTGTGATAATATGTTATCATGTAATTTATTGACGATAAGACGCATGTTGTGACACGATATACGATATGATATGTGCATGATATGGTATGATACGTAGAAGACATGATATGTTTAGGATATGACATGTTTAACCTGACATGCAAGATGATATAGTGACATAAAACCCCATATATGCATGGAAAGTTATGATAAAGATGATAGGATAAAAAGGAAAGTGGAACGGATGGTATTGTATGATAATGAAAGAAAAATGTTGGGATCTCATGTATCATTGTGTGTTCATGTATTCGAGAATACCCTTCTTACACTACAAGGCAGGAAAACGATCATTATGTTTATCATAATGCTTTGACGGTTGCTATTCCTAATGGGTGTTTGACGACAACAACTCTAGAGAATGCTAGGCCGACTAAGAAAATGATCTAGGAGGTGGGCGAACTGACTAGTGGGTTCATACTTGCACGTGTAAACCGTGTGTGGAAAAGTAAACATACATCTAATTAGGATAGTATTTTCAATTATATGAAAATGTCAGGTGAAAGTATTAATAAAATATAGATATATAGTTTTTTGGAAAGTATTTAAAACAATAAATAACAAAATAAACCTTTTGTATTTTATGGATTTATTTTAGTGTAATGAAATTCAAATAAATAGAGATATGAAACTAAATTTGATTTTGAGAGTTTCCATAAAAGAAGCGGTAGAAAAGGAAATGTTTAGAGTAATTTTAAATATGATTCCTAAATTTGATACTAAAATCTGAAGTTTCCCTAATCGGAATTTACTTATGCTTCCAATTCCCTATTAATATTATCATTAAATCAACACAAAACTCCATCCATCTCTGTTTCAATCCAACATTCTCACCATTACAATGCCTTTCGCAAATGCCTCCACCCTCCGCTACTCTCTCCGCCGCAACCACGGCGCCGATCAACTCCTCCAACTCCGCTTGGGCTATTCCAGCCGTCTGATCTCTCGATCGCCGTCCGCCGGCCTTCCCTACGACATCCTGGAAGAAACTCCCTCGACTCCAATGGCGGATGCTCTGTTTCCTCTGCCTCTCCGAGAGCTGGAAGATCCGTTATTCTGCCACGCTTACTTGGTTGAATTGGTGTCCTCCTTCAACCTCGGCTCTGTGAAGTGGAACCCCATTGTCCAGAAAATCACGTCGTTCGTCACACAATGGGCCGCCGTAGACTATGACGCGAAGTTCCAATTGGTGGCGGACATTGATTACATTCAAATGTTTTGGATGGAGAAGCGCGGGGGTTCAGTTGGGCGAGGTGTAATGGTGGAGGAGAAAGTGGTTCTGGAGGAAGCTGGAGTGGCGGCGGCAGGAAATCAGGGAATTGGGGGAGAAGAGTGCAGTGTGTGCTACGAAAGCTATGAAGCAGAGAAGGGGGGAGAGAAAGAGGTGGCTACAATCCCATGTGGTCATGCGTTTCACAAATCATGCATCCTCACCTGGTTTCAAAGGAGCAATTCATGCCCTTTGTGTAGAGCCAAATTATAGCATATTTAACACATTATTATTCTTAATTATACATTTTTATTTTTTTATTTTTTATATTTCATTCACTTGCATGATGTAAAAACAAACAAATAAAGAGAAACACATATTTATTGTATTAATACATTACTAATGTATAGATACATTAAATATAAAAATATATTTGAAACTTAAATCAATTTGAAATTAGTTAAATATAGATTAAAAATACTAAAAAAGATAAAGATAAATCAAATAATATAACAACTTATTTTTTATTTTCTTAATATTAACATATTTGTCCTTTAAAAAGAAAAAAGAAAAGAAAAAAAAAATCAGTAAAGAGTGGAAGAAGGCCGCTAGACGTTAGTGTTTTCGCACGCTCCGGCAGCCAGTTGTACGGTCAACGCTTCATTTAACGACGTCAACTAGCCGTTTGGCCGTGCCTGAATATATCTCACCGGCGCGGAAGACGCGACGGCGAAGAAGAAAAGGAACAATAGAAATCAGGCGTTACTATTTCTCGCACGTGCCGGCACAAATATTTTCCTTTTTTGCTTCCACTACTAGAAGAAATAGCCGTTCGGCCGTGCCTGAAAATATTTCACCGGCGCTGTGAACATTTTCCTTTTATGAATTCTGGAAGTGATCCAACGGTCAGAAACATTTGGGAATCAAAAGCCTATAAATAAGACACCGCTCCCTCTTCCCCTTCCCTACTAATTTCGACATACTCTTAACAGTTGCTCATATCCTCTGTTTTCATCAACACTCACCATGTCTTTAACCTTCGGCGACTCTCTGTCCTTCCAATGTTCCTTCCGCACCAATACCACCGGCAACTTGGCTTCCCACGAGCAACCCATGCAGTTCGTGGAACTCCGACTCGGACATTCGAGCCATCTCATCTCTCGATCTTCTCGCCAAATTCTCCAACAAACTCCCTCAACTCCAATGGGCGATGCTCTGTTTCCTTTTATTCTGCGCGACCTGCTCGACCCACCCTTCCTCTCCAAATCCCACGTTCTTCGGTTTCTGTCTTCCTTCACCATCCCCATCGCCGTCTGCAATATAATCTTTGCGGAGATCTCCTCCTTTGCGCTCCACTTGGCCGCCGGCAACGTGGATCTCAACTTCCACATCGTCGTGGATGTGGATGCCATCGAAATGATATGGGTGGACCTGGACCCATTCCTTATTGAAGAATACTCTCCGGCTGCGATGAACGGGGCGCCGGCGTCGGCGATTGAGAGGTTGCAGAGGCAGAAATTTGATGGGTTAAGGGAGGAAGAGAAGGAGGGGGATTGCAGCGTGTGTTGCGAAGCGCTGAAGGGAGAAGAGGAGGTGAGCAGAATCCCATGTGGTCATGTGTATCACAAATGCTGTATCCTGAAGTGGCTTGAGATGAGCAATTCGTGTCCTCTCTGCAGAACCCAATTGGAACAATAATTCTTTCTTTTTTGTTTTTGAAAGAATTAGGGTAAAAGTAATTCTCATATTTTTGTGCAACAATTTGGTTGGCCATAGATGTATATAGACTCATAATAGTAATAATAAAACAATTTTTAGATTTGAATAAGTTGAGTTATGAATGTTGTGATATCAAACAACAACAATTTAATGCATCCTAAACGCAATTATATGTGGCAAACCGCAATGAAGACAAACGAAAAGGGTTGCAGTGAGTAAACCAAACGTGAGAAAATTATTAGACACTTGATTTCATGCAGCCACAGAAACCCAAAACGCCTCGGCCTAGCCCTACAGACACACAAACCCCACCGCCTGCAGCCCAACTGACATCTCGGCCCGGTTCACTACGCACACGTGGCATCTCCTTATTGCGCCATGTGTCACCATCCGACGCGAAAACCTCTCGGCAGGTCCGGCGCGGCTTCTCGGCTCGAAAATCCCTTTTTGGACCTGTCTGCACTATTTTGACCCTCTCGGACCTATTTTCAACCTAAATAAAGGTAAATAAGGTCGTTTTAGTGCCCTATTTCAAAATTTTAAGTTAGGGTTTATTATTATTATTGTGAAATACTAACAAAAGCGATAAAGAATCCAATAGGAACCAACGACCGGTGATGACGTGAGACGTTTTCGAGGAGCGAGAGCTTACTTTAAATTAATTAGGGAGTACGCCGGCTAAGGCTAGCCAAGTAAGTGGCCCTACTGTCATTAGGTTATGAAATACAAGTTGTATGTTGGCAGGTGCTCGTGGTTTCATGTGTCATAAATTGTATGTTTAGACCTTTATGAATTAATATGTAAATGTTATGCGATGTGAACGCTATGCTATCTTTGGATGAACTAATATGATTTATGATGTTATGTATGATGATATGCACAAATTGCATTATGTGACTGTTATGTTACATGTTGTATGATATGAATTATACATCCAAGCTACCTGTTAGGATAGTATCGTAGGAAAATAGACTATTATGATAGGTCTCATGCATTGCATTCGCATGTTCTTGCATTATAACCTCGATAGGGGTCGCTTATTGAGTATTTTTAAAATACTCAAGCCTCGTGCTATTACATTTTTCAGATAAAGGCAAGGCGTCCCTATAAGGCTGATGGAGGTATTACAATCCCGAGACCGTGGCACATGCATATGATAGATTTGCATTTCATTTAGTAGTATATGTTAGTGTAGGTTGAGTTGTATTTTCCATTTAATAGTATAGATTAGTTAAATTGAATTTCCATTTCCATTTGTGGTATAGGTTAGTATAGGTTGAATTGAATTTTCTTGATAGTATATAAGTTAGTATAGTAGTGACTTTAGGTTAAGTGAAAATTTAGGGTCGTTACACATGTTTTATGTCGACCTTCTATCGCGGACTCAAGAAAGGTTGGGTACTCGTCTCGACTTCAGGACTGCCTCCACCCATAAACATATGATCGAATCGAACGTTGGAATCAAATTTTGGAAGACGTGCTACGTGTCTACATATTAGATTTTGTAGGTAGCTAAGAATCTAAATTGCATCTCATGGAGTTCGCCTACAACAACAACTTCTAGAAAACTATCGCTATGGCACCGTTTGAAGCTTTATACGAAAAACGGTGTAAGAACCCAATTTGGATAGCATAACATATAGAGGTCATCATACAACATAGACGTCACAACAAGATCCATAACATAACACAAACTTCTCATAGTATAACTTACAACATAACATAACATATGTCATAGCATAAATAATATAATACACGTCAATAAGTCACAAAGTATGATGGGTAGAGGGGCCTCAAAGCATCCATTGTTCATAGTTCATACAATTCATCCAACCAAACCAGTAGTAAAGTTACTTACATGGTTGGCCAAAGTCGAAGTCACTAATTTATCATTGTACTAGACTGAATTTGCCATTTGTAGTCCAATCCAACCTACGTAGGTCCACGACATCGAGTTAAGGCATATTATATGATTCAATTTACCTCACGATATAAATTAAATCAACATTTGACTCAAAAGTAACTTAAATCAACATTTGACTCAAAAGCAACTTAAATTAACAAAATGGTGGTAATGCTAACCTCAATTACTTCTCGTCCAAATCGACTCCTAAAGGGTCAAAATTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTGGAATGAGACCTAAATAGAGTAACCTAACAACCAAATAGCTGCCTGAAGCCACCGGAACCGAGTCGAGCGGCGTTGGAGCTAGAGTGACATAGGTTAAACTCGAGTTATGGGTCATGTTGAGATTTATGCTCTAAAGCCTCGTAATTAATTATTTTATTTATATTATTTTCTTTGTAATCTAATTGTTATCCATTATATGAAAATCTAAGATTATTAATGTAATTTTACAGTTATACAGGGATAGAATTTCTTTTCGTTGAGCGCCAGCTATTAGGAAAAAAGCTATTACAAGGTTTTACAGTTAGATGGGGATAGAATCAATTTCTTAATGGTCTTTGCAGGTGAAGGAGCCTACTGTTTCCCATATTTCTTTCACTGTAAACTCAGTAGCTCAGGGTTTCGGTTTCTTCTTCTTCATCTTACTCAATCTTTCCTTCCTTAATTCAAGAGAACTGTATGTGGTTGACATACAAGAGGATCGTGTTCAAGTAATAACCTAAAGAGTCTACAGTATATGGATAAGGTTGGGTGCCTTATCCTGGTAACACTATTGATACGGCTCACTTTGTAATCGTTACAAATGATTTGATCCAAATTATTCGTGTGGAGACATGTAAGTGGGGGTATCCTATTCAATGAGTTTGTATAAGACTGGATCAAGAAATATTTAATTTCTCTTTATAAATCCGTTAATTGAGAAGATTAATATTTCAGATGATGATCATATGCGACTCGATCTTAATCTTGAGTGAGTTATGAACTCCTGCTTGTGAGGGCTTGCCTTTAATTTACATGGGTGAGAATGACTCTTTTAGCCAATTCAATATACCTACTATTTTGGGACTTGATCAACTAGGGAGTTGGAAACATAATATCTTGAGATGAAATTCATTATGAGTTGTTGTACTCATTTCAGGACTTGAACAATAGGGCCCCACCCTCTCATTGACCCGAGAGGGACTTGGTTTATGATTGGATCATAGACAAATTATTCATTAGAGAATTAGTGGTACTTAAGGTGAAATAGTTAATTATAGGGGTAAAACGGACTTTTGACCCAGCTGTAATTATGAATAACTCGTGAAGGATCGACTTGCTTGTAATGATTATATCAATGGACATAACTTGTCCTACAGTACATAAGAGTACAACTCTAGGTCTATAGTGGAGTGACGTATAGTTAATGAATAAAAATTGATTAATAAAAGAGTATAATTAATTAATTTTGTATCATTGGAGATCTGTAGGTTCATAAGGTTCCGTTGCTAGCTCATAGTAACGCTAAAAGGTTCAATTTATTTGAAAGAAATTTTGAAGTGTTCAAATTGATGTTTAATAAATTAGATATATTAAATATAGAGAAGAAATAAATTTAATTTGAAATATCAAATTAATATTTAATAAATAGATAAAATATATTTAATTTGAAAGGTTCAAATTAATATTTAATATATTAGATAGGTTAAATATAAATGAAAAAAAATATATTAATTTAAAGGGTTCAAATTAATATTTAATATATTAGATATATTAAAAAGAAAAAAATATATTTATTATATTTGATACCCTATATTTGAAATTTGAATGAAATTCAAATTAATTAAATATATATTAGGAATGGTAAAATATTCTAATATATTAAATATCCAAATATATTATTTGGTAAATATTCTCCTAGAGTCCCTATAAATAGAACCTCGGGGTTGAGTTAAAGAGATATCAATCTCTCCAGAAAATTCTTGAAACTCTTTCTCCAATCCTTTGGGATTTTCTTTTAAGAGGCTCCCACAAGCCTTCACCTTGTGTTTAAGAGATTTTATTTCAAGAGGCTCCACAAGCCTTGACTTTGTGTTCGAGCCTTGACTTCTGCATGTTGGAATACTGAGGAGTCTTGTAAGCTAAAGTTTCTACCAAGGTAGAGTTCTTACTCTTCTATTTATTGCATTATTTTAATTCTTAATAAAAATCAAAACGGTGCAAATGCTTTCGCTACGTTGGATGAAAAGTTCATTCCCTTCAATAGGTTAGTCATGGGTAGGCATGCAGGTCTGTTTGAGAGTGCTCCCACTCCGTGGATGAAGAGTTCATTCCCTTCAATAGGTTATGGTCTGTTTGAGAGTGCTTCCGCTACGTGGATGTAGAGTTCATTCCCTTCAATAGGTTAGTCATGGGTAGACATGCAGGTATGGTCTATTTGAGAGTTTATGGACTCTAGGCAAAAAAGAAGGGATCACGAATTTGAGTTGACCTGAGAATGGCTGAAGATTAAATGAGTTTGAGTGGCTTCTGGGCAGAGTCATGTGTACGAGCTGCACATAGCCGGGCTACGTTTGAGGTGTAGGTCGAGACTACTGCAGGCAAAACAATCGAAGTCATATCCATCACATAACCTAATAGTAATACCTAGCGAGTATTTATTCTATCAAATAACTTCTCACAAAATATATTTTAGAAGAATAGAAATAAAATTAATTTTGGAACTTTTAAGATTGATATTTTCAAACATGGGCAATAAACAAAATATAATTTTTTCTATCATCTTGAATATGAGTTATTTATTTTATTTTTTTTTAAATATATTAATACATTAAAAATTAAAAATACTAAAAAAAACACCAACATAAATCAAATAATTAATAACTTATTTTTCATTTTCATAATATGAACATATTTTTCAGAAAAAAGAAAAGAAAGAAAAAAATAATAATAATAAAACAATGGGTGAGTTAAAACAGAAGGGAAATGGGAGAAGCCGATAGACATTAGTGTTTTCGCACGCTCCGGCAGGCCGTTGTACGGTCAACGCTTCATTCAACCACATCAAACTAGCCGTTTGGCCGTGCCTGAAAACATCTCACCGGCACGGCCAACATTTTCCTTTTATGAATTCTGGAAGTGATCCAACGGTCAGAAACATTTGGAAATCAAAAGCCTATAAATAAGACACCGCTCCCCCTTCCCCTTGCCTACCAATTTCAACACACTCTTAACAGTTGCTCATATCCTCTGTTTTCAGCAACACCCACCATGTCTTTGAGCTCCCACAACTATCTGTCCTTCCAATGTTCCATGCGGGGCACTTGCAACGACAGCGTGGGTTCCGGCGAGCAACCCATGCAGTTGATGGAACTCCGAGTCGGACATTCGAGCAATCTCATCTCTCGATCCTCTCACCAAATTCTCCAACGGAGTCCCTCAACCCCAATGGGCGATGCTCTGTTCTCTTTTATTCTGCGCGACCAGGAACAACCACCCTTCCTCGAAAACTCCTCCGTGCTTCGGTTTCTGTCTTCCTTCAGAATCCCCATCCCCGCCTGCAATGTCATCTATGACCAGATCTCCTCGTTTGCGCAACACATGACCGCCGACGACTTCCATCTCAACTTCCACATGGTCGTGGATGTGAATGTCAGCGAAATGACATGGGTGGACCTGGACCCATTCCTTGTTGAAGAACATTCTCCGCCTGCGATGAACGGGGCGCCGGCGTCGGCGATTGAGAGGTTGCAGAGGCAGAAATTTGATGGGTTAAGGGAGGAAGAGGAGGAGGGGGATTGCAGCGTGTGTTGCGAAGCGCTGAAGGGAGAAGAGGAGGTGAGCAGAATCCCATGTGGTCATGTGTATCACAAATGCTGTATCCTCAAGTGGCTTGAGATGAGCAATTCGTGTCCTCTCTGCAGAACCCAATTGGAACAA

mRNA sequence

CACTTGCAACGGCACCGTGGCTTCCGACCAGCAACCCATGCAGCTCCTGGAGCTCCGACTCGGAAATTCGACCCATCTGATTTCTCGATCTTCTCGCCAAATTCTCCAACAAACTCCCACAACCCCAATGGGCGATGCTCTGTTTCCTTTTGTTCTGCGCGACCTCCAACACCCACCCTTCCTCTCCAACTGCTATGTTCTTCAGTTTTTGTCTTCCTTCAGCATCCCCATCGCCGCCTGCGACATCATCTATGAAGAGATCTCCTCGTTTGCGCTTCAATTGGCCGCCGGCAACGTGGATCTCAACTTCCACATCGTCGTCGAAGTGGATGTCATCGAAATGATATGGGTGGACCTGGACCCATTCCTTGTTGAAGAATATTCTCCGGCTGAGATGAACGGGGCGCCGGCGTCGGCGATTGAGAGGTTGCAGAGGCAGGAATTTGATGGGTTAAGGGAGGAAGAGGAGGAGGGGGATTGCAGTGTTTGTTGCGAAGCGCTGAAGGGAGAAGAGGAGGTGAGTAGAATCCCGTGTGGTCATGTGTATCACAAATGCTGTATTCTCAAGTGGCTTCAGATGAGCAATTCCCGTCTGATCTCTCGATCGCCGTCCGCCGGCCTTCCCTACGACATCCTGGAAGAAACTCCCTCGACTCCAATGGCGGATGCTCTGTTTCCTCTGCCTCTCCGAGAGCTGGAAGATCCGTTATTCTGCCACGCTTACTTGGTTGAATTGGTGTCCTCCTTCAACCTCGGCTCTGTGAAGTGGAACCCCATTGTCCAGAAAATCACGTCGTTCGTCACACAATGGGCCGCCGTAGACTATGACGCGAAGTTCCAATTGGTGGCGGACATTGATTACATTCAAATGTTTTGGATGGAGAAGCGCGGGGGTTCAGTTGGGCGAGGTGTAATGGTGGAGGAGAAAGTGGTTCTGGAGGAAGCTGGAGTGGCGGCGGCAGGAAATCAGGGAATTGGGGGAGAAGAGTGCAGTGTGTGCTACGAAAGCTATGAAGCAGAGAAGGGGGGAGAGAAAGAGTTCGTGGAACTCCGACTCGGACATTCGAGCCATCTCATCTCTCGATCTTCTCGCCAAATTCTCCAACAAACTCCCTCAACTCCAATGGGCGATGCTCTGTTTCCTTTTATTCTGCGCGACCTGCTCGACCCACCCTTCCTCTCCAAATCCCACGTTCTTCGGTTTCTGTCTTCCTTCACCATCCCCATCGCCGTCTGCAATATAATCTTTGCGGAGATCTCCTCCTTTGCGCTCCACTTGGCCGCCGGCAACGTGGATCTCAACTTCCACATCGTCGTGGATGTGGATGCCATCGAAATGATATGGGTGGACCTGGACCCATTCCTTATTGAAGAATACTCTCCGGCTGCGATGAACGGGGCGCCGGCGTCGGCGATTGAGAGGTTGCAGAGGCAGAAATTTGATGGGTTAAGGGAGGAAGAGAAGGAGGGGGATTGCAGCGTGTGTTGCGAAGCGCTGAAGGGAGAAGAGGAGGTGAGCAGAATCCCATGTGGTCATGTGTATCACAAATGCTGTATCCTGAAGTGGCTTGAGATGAGCAATTCCTCCCACAACTATCTGTCCTTCCAATGTTCCATGCGGGGCACTTGCAACGACAGCGTGGGTTCCGGCGAGCAACCCATGCAGTTGATGGAACTCCGAGTCGGACATTCGAGCAATCTCATCTCTCGATCCTCTCACCAAATTCTCCAACGGAGTCCCTCAACCCCAATGGGCGATGCTCTGTTCTCTTTTATTCTGCGCGACCAGGAACAACCACCCTTCCTCGAAAACTCCTCCGTGCTTCGGTTTCTGTCTTCCTTCAGAATCCCCATCCCCGCCTGCAATGTCATCTATGACCAGATCTCCTCGTTTGCGCAACACATGACCGCCGACGACTTCCATCTCAACTTCCACATGGTCGTGGATGTGAATGTCAGCGAAATGACATGGGTGGACCTGGACCCATTCCTTGTTGAAGAACATTCTCCGCCTGCGATGAACGGGGCGCCGGCGTCGGCGATTGAGAGGTTGCAGAGGCAGAAATTTGATGGGTTAAGGGAGGAAGAGGAGGAGGGGGATTGCAGCGTGTGTTGCGAAGCGCTGAAGGGAGAAGAGGAGGTGAGCAGAATCCCATGTGGTCATGTGTATCACAAATGCTGTATCCTCAAGTGGCTTGAGATGAGCAATTCGTGTCCTCTCTGCAGAACCCAATTGGAACAA

Coding sequence (CDS)

ATGCAGCTCCTGGAGCTCCGACTCGGAAATTCGACCCATCTGATTTCTCGATCTTCTCGCCAAATTCTCCAACAAACTCCCACAACCCCAATGGGCGATGCTCTGTTTCCTTTTGTTCTGCGCGACCTCCAACACCCACCCTTCCTCTCCAACTGCTATGTTCTTCAGTTTTTGTCTTCCTTCAGCATCCCCATCGCCGCCTGCGACATCATCTATGAAGAGATCTCCTCGTTTGCGCTTCAATTGGCCGCCGGCAACGTGGATCTCAACTTCCACATCGTCGTCGAAGTGGATGTCATCGAAATGATATGGGTGGACCTGGACCCATTCCTTGTTGAAGAATATTCTCCGGCTGAGATGAACGGGGCGCCGGCGTCGGCGATTGAGAGGTTGCAGAGGCAGGAATTTGATGGGTTAAGGGAGGAAGAGGAGGAGGGGGATTGCAGTGTTTGTTGCGAAGCGCTGAAGGGAGAAGAGGAGGTGAGTAGAATCCCGTGTGGTCATGTGTATCACAAATGCTGTATTCTCAAGTGGCTTCAGATGAGCAATTCCCGTCTGATCTCTCGATCGCCGTCCGCCGGCCTTCCCTACGACATCCTGGAAGAAACTCCCTCGACTCCAATGGCGGATGCTCTGTTTCCTCTGCCTCTCCGAGAGCTGGAAGATCCGTTATTCTGCCACGCTTACTTGGTTGAATTGGTGTCCTCCTTCAACCTCGGCTCTGTGAAGTGGAACCCCATTGTCCAGAAAATCACGTCGTTCGTCACACAATGGGCCGCCGTAGACTATGACGCGAAGTTCCAATTGGTGGCGGACATTGATTACATTCAAATGTTTTGGATGGAGAAGCGCGGGGGTTCAGTTGGGCGAGGTGTAATGGTGGAGGAGAAAGTGGTTCTGGAGGAAGCTGGAGTGGCGGCGGCAGGAAATCAGGGAATTGGGGGAGAAGAGTGCAGTGTGTGCTACGAAAGCTATGAAGCAGAGAAGGGGGGAGAGAAAGAGTTCGTGGAACTCCGACTCGGACATTCGAGCCATCTCATCTCTCGATCTTCTCGCCAAATTCTCCAACAAACTCCCTCAACTCCAATGGGCGATGCTCTGTTTCCTTTTATTCTGCGCGACCTGCTCGACCCACCCTTCCTCTCCAAATCCCACGTTCTTCGGTTTCTGTCTTCCTTCACCATCCCCATCGCCGTCTGCAATATAATCTTTGCGGAGATCTCCTCCTTTGCGCTCCACTTGGCCGCCGGCAACGTGGATCTCAACTTCCACATCGTCGTGGATGTGGATGCCATCGAAATGATATGGGTGGACCTGGACCCATTCCTTATTGAAGAATACTCTCCGGCTGCGATGAACGGGGCGCCGGCGTCGGCGATTGAGAGGTTGCAGAGGCAGAAATTTGATGGGTTAAGGGAGGAAGAGAAGGAGGGGGATTGCAGCGTGTGTTGCGAAGCGCTGAAGGGAGAAGAGGAGGTGAGCAGAATCCCATGTGGTCATGTGTATCACAAATGCTGTATCCTGAAGTGGCTTGAGATGAGCAATTCCTCCCACAACTATCTGTCCTTCCAATGTTCCATGCGGGGCACTTGCAACGACAGCGTGGGTTCCGGCGAGCAACCCATGCAGTTGATGGAACTCCGAGTCGGACATTCGAGCAATCTCATCTCTCGATCCTCTCACCAAATTCTCCAACGGAGTCCCTCAACCCCAATGGGCGATGCTCTGTTCTCTTTTATTCTGCGCGACCAGGAACAACCACCCTTCCTCGAAAACTCCTCCGTGCTTCGGTTTCTGTCTTCCTTCAGAATCCCCATCCCCGCCTGCAATGTCATCTATGACCAGATCTCCTCGTTTGCGCAACACATGACCGCCGACGACTTCCATCTCAACTTCCACATGGTCGTGGATGTGAATGTCAGCGAAATGACATGGGTGGACCTGGACCCATTCCTTGTTGAAGAACATTCTCCGCCTGCGATGAACGGGGCGCCGGCGTCGGCGATTGAGAGGTTGCAGAGGCAGAAATTTGATGGGTTAAGGGAGGAAGAGGAGGAGGGGGATTGCAGCGTGTGTTGCGAAGCGCTGAAGGGAGAAGAGGAGGTGAGCAGAATCCCATGTGGTCATGTGTATCACAAATGCTGTATCCTCAAGTGGCTTGAGATGAGCAATTCGTGTCCTCTCTGCAGAACCCAATTGGAACAA

Protein sequence

MQLLELRLGNSTHLISRSSRQILQQTPTTPMGDALFPFVLRDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNVDLNFHIVVEVDVIEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQEFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHKCCILKWLQMSNSRLISRSPSAGLPYDILEETPSTPMADALFPLPLRELEDPLFCHAYLVELVSSFNLGSVKWNPIVQKITSFVTQWAAVDYDAKFQLVADIDYIQMFWMEKRGGSVGRGVMVEEKVVLEEAGVAAAGNQGIGGEECSVCYESYEAEKGGEKEFVELRLGHSSHLISRSSRQILQQTPSTPMGDALFPFILRDLLDPPFLSKSHVLRFLSSFTIPIAVCNIIFAEISSFALHLAAGNVDLNFHIVVDVDAIEMIWVDLDPFLIEEYSPAAMNGAPASAIERLQRQKFDGLREEEKEGDCSVCCEALKGEEEVSRIPCGHVYHKCCILKWLEMSNSSHNYLSFQCSMRGTCNDSVGSGEQPMQLMELRVGHSSNLISRSSHQILQRSPSTPMGDALFSFILRDQEQPPFLENSSVLRFLSSFRIPIPACNVIYDQISSFAQHMTADDFHLNFHMVVDVNVSEMTWVDLDPFLVEEHSPPAMNGAPASAIERLQRQKFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHKCCILKWLEMSNSCPLCRTQLEQ
Homology
[Close]
BLAST of Cp4.1LG05g11580 vs. ExPASy Swiss-Prot
Match: P0CH30 (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.9e-09
Identity = 32/81 (39.51%), Postives = 43/81 (53.09%), Query Frame = 0 

Query: 655 EHSPPAMNGAPA--SAIERLQRQKFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYH 714
           E+ P      PA  SAIE L            E   C+VC +  +   E  ++PC H+YH
Sbjct: 188 ENDPNRYGTPPASKSAIEALPLVNITKSNLNSEFNQCAVCMDDFEEGTEAKQMPCKHLYH 247

Query: 715 KCCILKWLEMSNSCPLCRTQL 734
           K C+L WLE+ NSCP+CR +L
Sbjct: 248 KDCLLPWLELHNSCPVCRHEL 268

[Close]
BLAST of Cp4.1LG05g11580 vs. ExPASy Swiss-Prot
Match: E9QAU8 (E3 ubiquitin-protein ligase RNF165 OS=Mus musculus OX=10090 GN=Rnf165 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.9e-09
Identity = 32/95 (33.68%), Postives = 50/95 (52.63%), Query Frame = 0 

Query: 653 VEEHSPPAMNGAPASAIERL---------QRQKFDGLREEEEEGD----CSVCCEALKGE 712
           +E+       GA  + IER          + Q   G ++E EE D    C++C   L+  
Sbjct: 246 LEDRLGNVTRGAVQNTIERFTFPHKYKKRRPQDSKGKKDEGEESDTDEKCTICLSMLEDG 305

Query: 713 EEVSRIPCGHVYHKCCILKWLEMSNSCPLCRTQLE 735
           E+V R+PC H++H+ C+ +WL MS  CP+CR  +E
Sbjct: 306 EDVRRLPCMHLFHQLCVDQWLAMSKKCPICRVDIE 340

[Close]
BLAST of Cp4.1LG05g11580 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.9e-09
Identity = 31/81 (38.27%), Postives = 46/81 (56.79%), Query Frame = 0 

Query: 655 EHSPPAMNGAPA--SAIERLQRQKFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYH 714
           E+ P      PA  SAI+ L   K      + E   C+VC +  +   +V ++PC HV+H
Sbjct: 180 ENDPNRYGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFH 239

Query: 715 KCCILKWLEMSNSCPLCRTQL 734
           + C+L WLE+ NSCP+CR +L
Sbjct: 240 QDCLLPWLELHNSCPVCRFEL 260

[Close]
BLAST of Cp4.1LG05g11580 vs. ExPASy Swiss-Prot
Match: Q6ZSG1 (E3 ubiquitin-protein ligase RNF165 OS=Homo sapiens OX=9606 GN=RNF165 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.8e-09
Identity = 32/95 (33.68%), Postives = 50/95 (52.63%), Query Frame = 0 

Query: 653 VEEHSPPAMNGAPASAIERL---------QRQKFDGLREEEEEGD----CSVCCEALKGE 712
           +E+       GA  + IER          + Q   G ++E EE D    C++C   L+  
Sbjct: 245 LEDRLGNVTRGAVQNTIERFTFPHKYKKRRPQDGKGKKDEGEESDTDEKCTICLSMLEDG 304

Query: 713 EEVSRIPCGHVYHKCCILKWLEMSNSCPLCRTQLE 735
           E+V R+PC H++H+ C+ +WL MS  CP+CR  +E
Sbjct: 305 EDVRRLPCMHLFHQLCVDQWLAMSKKCPICRVDIE 339

[Close]
BLAST of Cp4.1LG05g11580 vs. ExPASy Swiss-Prot
Match: Q6AXU4 (E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus OX=10116 GN=Rnf181 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.0e-09
Identity = 36/93 (38.71%), Postives = 48/93 (51.61%), Query Frame = 0 

Query: 641 SEMTWVDLDPFLVEEHSPPAMNGAPASAIERLQRQKFDGLREEEEEGDCSVCCEALKGEE 700
           + M + DL     E H PP    A  + +E L R     +R  + E  C VC    + EE
Sbjct: 46  NRMDFEDLGLVDWEHHLPPP---AAKAVVESLPRTV---IRSSKAELKCPVCLLEFEEEE 105

Query: 701 EVSRIPCGHVYHKCCILKWLEMSNSCPLCRTQL 734
            V  +PC H++H  CIL WL  +NSCPLCR +L
Sbjct: 106 TVIEMPCHHLFHSNCILPWLSKTNSCPLCRHEL 132

[Close]
BLAST of Cp4.1LG05g11580 vs. NCBI nr
Match: KAG6605227.1 (E3 ubiquitin-protein ligase MPSR1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 434 bits (1117), Expect = 1.39e-145
Identity = 206/223 (92.38%), Postives = 216/223 (96.86%), Query Frame = 0 

Query: 513 MSNSSHNYLSFQCSMRGTCNDSVGSGEQPMQLMELRVGHSSNLISRSSHQILQRSPSTPM 572
           MS SSH+YLSFQCSMRGTCNDS+GS EQPMQLMELRVGHS NLISRSSHQILQRSPSTPM
Sbjct: 1   MSLSSHDYLSFQCSMRGTCNDSLGSDEQPMQLMELRVGHSRNLISRSSHQILQRSPSTPM 60

Query: 573 GDALFSFILRDQEQPPFLENSSVLRFLSSFRIPIPACNVIYDQISSFAQHMTADDFHLNF 632
           GDALFSFILRDQEQPPFLENSSVLRFLSSFRIPIPACN+IYDQISSFAQHMTADD HLNF
Sbjct: 61  GDALFSFILRDQEQPPFLENSSVLRFLSSFRIPIPACNIIYDQISSFAQHMTADDVHLNF 120

Query: 633 HMVVDVNVSEMTWVDLDPFLVEEHSPPAMNGAPASAIERLQRQKFDGLREEEEEGDCSVC 692
           HMVVDVNV EM WVDLDPFL+E+HSPPAMNGAPASAIERLQR+KFDGLREEEEEGDCSVC
Sbjct: 121 HMVVDVNVGEMIWVDLDPFLLEDHSPPAMNGAPASAIERLQREKFDGLREEEEEGDCSVC 180

Query: 693 CEALKGEEEVSRIPCGHVYHKCCILKWLEMSNSCPLCRTQLEQ 735
           CEALKGEEEVSRIPCGH YHKCCILKWL++SNSCPLCRTQL++
Sbjct: 181 CEALKGEEEVSRIPCGHAYHKCCILKWLQISNSCPLCRTQLQE 223

[Close]
BLAST of Cp4.1LG05g11580 vs. NCBI nr
Match: XP_023533112.1 (E3 ubiquitin ligase BIG BROTHER-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 434 bits (1115), Expect = 1.68e-145
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0 

Query: 527 MRGTCNDSVGSGEQPMQLMELRVGHSSNLISRSSHQILQRSPSTPMGDALFSFILRDQEQ 586
           MRGTCNDSVGSGEQPMQLMELRVGHSSNLISRSSHQILQRSPSTPMGDALFSFILRDQEQ
Sbjct: 1   MRGTCNDSVGSGEQPMQLMELRVGHSSNLISRSSHQILQRSPSTPMGDALFSFILRDQEQ 60

Query: 587 PPFLENSSVLRFLSSFRIPIPACNVIYDQISSFAQHMTADDFHLNFHMVVDVNVSEMTWV 646
           PPFLENSSVLRFLSSFRIPIPACNVIYDQISSFAQHMTADDFHLNFHMVVDVNVSEMTWV
Sbjct: 61  PPFLENSSVLRFLSSFRIPIPACNVIYDQISSFAQHMTADDFHLNFHMVVDVNVSEMTWV 120

Query: 647 DLDPFLVEEHSPPAMNGAPASAIERLQRQKFDGLREEEEEGDCSVCCEALKGEEEVSRIP 706
           DLDPFLVEEHSPPAMNGAPASAIERLQRQKFDGLREEEEEGDCSVCCEALKGEEEVSRIP
Sbjct: 121 DLDPFLVEEHSPPAMNGAPASAIERLQRQKFDGLREEEEEGDCSVCCEALKGEEEVSRIP 180

Query: 707 CGHVYHKCCILKWLEMSNSCPLCRTQLEQ 735
           CGHVYHKCCILKWLEMSNSCPLCRTQLEQ
Sbjct: 181 CGHVYHKCCILKWLEMSNSCPLCRTQLEQ 209

[Close]
BLAST of Cp4.1LG05g11580 vs. NCBI nr
Match: KAG6605224.1 (E3 ubiquitin-protein ligase RDUF1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 433 bits (1113), Expect = 5.57e-145
Identity = 206/223 (92.38%), Postives = 216/223 (96.86%), Query Frame = 0 

Query: 513 MSNSSHNYLSFQCSMRGTCNDSVGSGEQPMQLMELRVGHSSNLISRSSHQILQRSPSTPM 572
           MS SSH+YLSFQCSMRGTCNDS+GS EQPMQLMELRVGHS NLISRSSHQILQRSPSTPM
Sbjct: 1   MSLSSHDYLSFQCSMRGTCNDSLGSDEQPMQLMELRVGHSRNLISRSSHQILQRSPSTPM 60

Query: 573 GDALFSFILRDQEQPPFLENSSVLRFLSSFRIPIPACNVIYDQISSFAQHMTADDFHLNF 632
           GDALFSFILRDQEQPPFLENSSVLRFLSSFRIPIPACN+IYDQISSFAQHMTADD HLNF
Sbjct: 61  GDALFSFILRDQEQPPFLENSSVLRFLSSFRIPIPACNIIYDQISSFAQHMTADDVHLNF 120

Query: 633 HMVVDVNVSEMTWVDLDPFLVEEHSPPAMNGAPASAIERLQRQKFDGLREEEEEGDCSVC 692
           HMVVDVNV EM WVDLDPFL+E+HSPPAMNGAPASAIERLQRQ+FDGLREEEEEGDCSVC
Sbjct: 121 HMVVDVNVGEMIWVDLDPFLLEDHSPPAMNGAPASAIERLQRQEFDGLREEEEEGDCSVC 180

Query: 693 CEALKGEEEVSRIPCGHVYHKCCILKWLEMSNSCPLCRTQLEQ 735
           CEALKGEEE SRIPCGHVYHKCCILKWL++SNSCPLCRTQL++
Sbjct: 181 CEALKGEEEGSRIPCGHVYHKCCILKWLQISNSCPLCRTQLQE 223

[Close]
BLAST of Cp4.1LG05g11580 vs. NCBI nr
Match: XP_022947839.1 (E3 ubiquitin-protein ligase RNF38-like [Cucurbita moschata])

HSP 1 Score: 431 bits (1108), Expect = 1.72e-143
Identity = 207/223 (92.83%), Postives = 216/223 (96.86%), Query Frame = 0 

Query: 513 MSNSSHNYLSFQCSMRGTCNDSVGSGEQPMQLMELRVGHSSNLISRSSHQILQRSPSTPM 572
           MS SSH+YLS+QCSMRGTCNDS+GS EQPMQLMELRVGHS NLISRSSHQILQRSPSTPM
Sbjct: 48  MSLSSHDYLSYQCSMRGTCNDSLGSDEQPMQLMELRVGHSRNLISRSSHQILQRSPSTPM 107

Query: 573 GDALFSFILRDQEQPPFLENSSVLRFLSSFRIPIPACNVIYDQISSFAQHMTADDFHLNF 632
           GDALFSFILRDQEQPPFLENSSVLRFLSSFRIPIPACNVIYDQISSFAQHMTADD HLNF
Sbjct: 108 GDALFSFILRDQEQPPFLENSSVLRFLSSFRIPIPACNVIYDQISSFAQHMTADDVHLNF 167

Query: 633 HMVVDVNVSEMTWVDLDPFLVEEHSPPAMNGAPASAIERLQRQKFDGLREEEEEGDCSVC 692
           HMVVDVNVSEMTWVDLDPFLVEE+SPP MNGAPASAIERLQRQ+F GLREEEEEGDCSVC
Sbjct: 168 HMVVDVNVSEMTWVDLDPFLVEENSPPPMNGAPASAIERLQRQEFGGLREEEEEGDCSVC 227

Query: 693 CEALKGEEEVSRIPCGHVYHKCCILKWLEMSNSCPLCRTQLEQ 735
           CEALKGEEE SRIPCGHVYHKCCILKWL++SNSCPLCRTQL++
Sbjct: 228 CEALKGEEEGSRIPCGHVYHKCCILKWLQISNSCPLCRTQLQE 270

[Close]
BLAST of Cp4.1LG05g11580 vs. NCBI nr
Match: XP_022947933.1 (E3 ubiquitin-protein ligase RNF126-like [Cucurbita moschata] >XP_023532920.1 E3 ubiquitin-protein ligase RNF126-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 372 bits (954), Expect = 4.28e-121
Identity = 185/190 (97.37%), Postives = 187/190 (98.42%), Query Frame = 0 

Query: 1   MQLLELRLGNSTHLISRSSRQILQQTPTTPMGDALFPFVLRDLQHPPFLSNCYVLQFLSS 60
           MQLLELRLGNSTHLISRSSRQILQQTPTTPMGDALFPFVLRDLQHPPFLSNCYVLQFLSS
Sbjct: 30  MQLLELRLGNSTHLISRSSRQILQQTPTTPMGDALFPFVLRDLQHPPFLSNCYVLQFLSS 89

Query: 61  FSIPIAACDIIYEEISSFALQLAAGNVDLNFHIVVEVDVIEMIWVDLDPFLVEEYSPAEM 120
           FSIPIAACDIIYEEISSFALQLAAGNVDLNFHIVVEVDVIEMIWVDLDPFLVEEYSPAEM
Sbjct: 90  FSIPIAACDIIYEEISSFALQLAAGNVDLNFHIVVEVDVIEMIWVDLDPFLVEEYSPAEM 149

Query: 121 NGAPASAIERLQRQEFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHKCCILKWLQ 180
           NGAPASAIERLQRQEFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHKCCILKWLQ
Sbjct: 150 NGAPASAIERLQRQEFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHKCCILKWLQ 209

Query: 181 MSNSRLISRS 190
           MSNS  + R+
Sbjct: 210 MSNSCPLCRT 219

[Close]
BLAST of Cp4.1LG05g11580 vs. ExPASy TrEMBL
Match: A0A6J1G826 (E3 ubiquitin-protein ligase RNF38-like OS=Cucurbita moschata OX=3662 GN=LOC111451599 PE=4 SV=1)

HSP 1 Score: 431 bits (1108), Expect = 8.31e-144
Identity = 207/223 (92.83%), Postives = 216/223 (96.86%), Query Frame = 0 

Query: 513 MSNSSHNYLSFQCSMRGTCNDSVGSGEQPMQLMELRVGHSSNLISRSSHQILQRSPSTPM 572
           MS SSH+YLS+QCSMRGTCNDS+GS EQPMQLMELRVGHS NLISRSSHQILQRSPSTPM
Sbjct: 48  MSLSSHDYLSYQCSMRGTCNDSLGSDEQPMQLMELRVGHSRNLISRSSHQILQRSPSTPM 107

Query: 573 GDALFSFILRDQEQPPFLENSSVLRFLSSFRIPIPACNVIYDQISSFAQHMTADDFHLNF 632
           GDALFSFILRDQEQPPFLENSSVLRFLSSFRIPIPACNVIYDQISSFAQHMTADD HLNF
Sbjct: 108 GDALFSFILRDQEQPPFLENSSVLRFLSSFRIPIPACNVIYDQISSFAQHMTADDVHLNF 167

Query: 633 HMVVDVNVSEMTWVDLDPFLVEEHSPPAMNGAPASAIERLQRQKFDGLREEEEEGDCSVC 692
           HMVVDVNVSEMTWVDLDPFLVEE+SPP MNGAPASAIERLQRQ+F GLREEEEEGDCSVC
Sbjct: 168 HMVVDVNVSEMTWVDLDPFLVEENSPPPMNGAPASAIERLQRQEFGGLREEEEEGDCSVC 227

Query: 693 CEALKGEEEVSRIPCGHVYHKCCILKWLEMSNSCPLCRTQLEQ 735
           CEALKGEEE SRIPCGHVYHKCCILKWL++SNSCPLCRTQL++
Sbjct: 228 CEALKGEEEGSRIPCGHVYHKCCILKWLQISNSCPLCRTQLQE 270

[Close]
BLAST of Cp4.1LG05g11580 vs. ExPASy TrEMBL
Match: A0A6J1G7Z5 (E3 ubiquitin-protein ligase RNF126-like OS=Cucurbita moschata OX=3662 GN=LOC111451666 PE=4 SV=1)

HSP 1 Score: 372 bits (954), Expect = 2.07e-121
Identity = 185/190 (97.37%), Postives = 187/190 (98.42%), Query Frame = 0 

Query: 1   MQLLELRLGNSTHLISRSSRQILQQTPTTPMGDALFPFVLRDLQHPPFLSNCYVLQFLSS 60
           MQLLELRLGNSTHLISRSSRQILQQTPTTPMGDALFPFVLRDLQHPPFLSNCYVLQFLSS
Sbjct: 30  MQLLELRLGNSTHLISRSSRQILQQTPTTPMGDALFPFVLRDLQHPPFLSNCYVLQFLSS 89

Query: 61  FSIPIAACDIIYEEISSFALQLAAGNVDLNFHIVVEVDVIEMIWVDLDPFLVEEYSPAEM 120
           FSIPIAACDIIYEEISSFALQLAAGNVDLNFHIVVEVDVIEMIWVDLDPFLVEEYSPAEM
Sbjct: 90  FSIPIAACDIIYEEISSFALQLAAGNVDLNFHIVVEVDVIEMIWVDLDPFLVEEYSPAEM 149

Query: 121 NGAPASAIERLQRQEFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHKCCILKWLQ 180
           NGAPASAIERLQRQEFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHKCCILKWLQ
Sbjct: 150 NGAPASAIERLQRQEFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHKCCILKWLQ 209

Query: 181 MSNSRLISRS 190
           MSNS  + R+
Sbjct: 210 MSNSCPLCRT 219

[Close]
BLAST of Cp4.1LG05g11580 vs. ExPASy TrEMBL
Match: A0A6J1KYV1 (E3 ubiquitin-protein ligase RNF126-like OS=Cucurbita maxima OX=3661 GN=LOC111499496 PE=4 SV=1)

HSP 1 Score: 355 bits (912), Expect = 4.01e-115
Identity = 177/190 (93.16%), Postives = 185/190 (97.37%), Query Frame = 0 

Query: 1   MQLLELRLGNSTHLISRSSRQILQQTPTTPMGDALFPFVLRDLQHPPFLSNCYVLQFLSS 60
           +QLLELRLG+STHLISRSSRQILQQTP+TP+GDALFPFVLRDLQHPPFLSNCYVLQFLSS
Sbjct: 30  IQLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFPFVLRDLQHPPFLSNCYVLQFLSS 89

Query: 61  FSIPIAACDIIYEEISSFALQLAAGNVDLNFHIVVEVDVIEMIWVDLDPFLVEEYSPAEM 120
           FSIPIAACDIIYEEISSFALQLAAGN+DLNFHIVVEVDV EMIWVDLDPFLVEEYSPAEM
Sbjct: 90  FSIPIAACDIIYEEISSFALQLAAGNMDLNFHIVVEVDVNEMIWVDLDPFLVEEYSPAEM 149

Query: 121 NGAPASAIERLQRQEFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHKCCILKWLQ 180
           NGAPASAIERLQRQ+FDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHK CILKWLQ
Sbjct: 150 NGAPASAIERLQRQKFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHKFCILKWLQ 209

Query: 181 MSNSRLISRS 190
           MSNS  + R+
Sbjct: 210 MSNSCPLCRT 219

[Close]
BLAST of Cp4.1LG05g11580 vs. ExPASy TrEMBL
Match: A0A6J1G809 (probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita moschata OX=3662 GN=LOC111451600 PE=4 SV=1)

HSP 1 Score: 346 bits (888), Expect = 1.49e-111
Identity = 173/183 (94.54%), Postives = 179/183 (97.81%), Query Frame = 0 

Query: 334 EFVELRLGHSSHLISRSSRQILQQTPSTPMGDALFPFILRDLLDPPFLSKSHVLRFLSSF 393
           +FVELRLGHSSHLISRSSRQILQQTPSTPMGDALFPFILRDLL PPFLSKSHVLRFLSSF
Sbjct: 31  QFVELRLGHSSHLISRSSRQILQQTPSTPMGDALFPFILRDLLHPPFLSKSHVLRFLSSF 90

Query: 394 TIPIAVCNIIFAEISSFALHLAAGNVDLNFHIVVDVDAIEMIWVDLDPFLIEEYSPAAMN 453
           +IPIAVCNIIF EISSFALHLAAGNVDLNFHIVVDVDAIEMIWVDLDPFLIEEYSP AMN
Sbjct: 91  SIPIAVCNIIFVEISSFALHLAAGNVDLNFHIVVDVDAIEMIWVDLDPFLIEEYSPPAMN 150

Query: 454 GAPASAIERLQRQKFDGLREEEKEGDCSVCCEALKGEEEVSRIPCGHVYHKCCILKWLEM 513
           GAPASAIERLQRQ+FDGLREEE EG+CSVCCEALKGEEEVSRIPCGHVYHKCCIL+WL+M
Sbjct: 151 GAPASAIERLQRQEFDGLREEE-EGECSVCCEALKGEEEVSRIPCGHVYHKCCILRWLQM 210

Query: 514 SNS 516
           SNS
Sbjct: 211 SNS 212

[Close]
BLAST of Cp4.1LG05g11580 vs. ExPASy TrEMBL
Match: A0A6J1L387 (RING-H2 finger protein ATL16-like OS=Cucurbita maxima OX=3661 GN=LOC111499493 PE=4 SV=1)

HSP 1 Score: 343 bits (881), Expect = 1.72e-110
Identity = 166/223 (74.44%), Postives = 191/223 (85.65%), Query Frame = 0 

Query: 513 MSNSSHNYLSFQCSMRGTCNDSVGSGEQPMQLMELRVGHSSNLISRSSHQILQRSPSTPM 572
           MS +  + LSFQ S+R     ++ S E PMQ +ELR+GHSS+LISRSS QILQ+SPSTP+
Sbjct: 1   MSLTFGDSLSFQFSIRTNTTGTLASHEHPMQFVELRLGHSSHLISRSSRQILQQSPSTPL 60

Query: 573 GDALFSFILRDQEQPPFLENSSVLRFLSSFRIPIPACNVIYDQISSFAQHMTADDFHLNF 632
           G++LF FILRD E PPFL N  VL FLSSF IP+ AC++IY +ISSFA  +TAD+  LNF
Sbjct: 61  GESLFPFILRDLEHPPFLPNYHVLHFLSSFSIPVAACDIIYQEISSFALRLTADNVDLNF 120

Query: 633 HMVVDVNVSEMTWVDLDPFLVEEHSPPAMNGAPASAIERLQRQKFDGLREEEEEGDCSVC 692
           H+VVDV+  EM WVDLDPFLVEE+SPPAMNGAPASAIERLQRQKFDGLREEEEEGDCSVC
Sbjct: 121 HIVVDVDAIEMIWVDLDPFLVEEYSPPAMNGAPASAIERLQRQKFDGLREEEEEGDCSVC 180

Query: 693 CEALKGEEEVSRIPCGHVYHKCCILKWLEMSNSCPLCRTQLEQ 735
           CEAL+GEEEVSRIPCGHVYHKCCILKWL++SNSCPLCRT+LEQ
Sbjct: 181 CEALRGEEEVSRIPCGHVYHKCCILKWLQISNSCPLCRTKLEQ 223

[Close]
BLAST of Cp4.1LG05g11580 vs. TAIR 10
Match: AT1G45180.1 (RING/U-box superfamily protein )

HSP 1 Score: 68.6 bits (166), Expect = 2.5e-11
Identity = 36/96 (37.50%), Postives = 52/96 (54.17%), Query Frame = 0 

Query: 638 VNVSEMTWVDLDPFLVEEHSPPAMNGAPASAI-ERLQRQKF-DGLREEEEEGDCSVCCEA 697
           ++V  MT+ +L    +EE       G     I  RL++QK+    R  +E   C VC E 
Sbjct: 541 LDVDNMTYEEL--LSLEERIGDVCTGLNEETISNRLKQQKYKSSTRSSQEVEPCCVCQEE 600

Query: 698 LKGEEEVSRIPCGHVYHKCCILKWLEMSNSCPLCRT 732
            K EEE+ R+ CGH +H  CI +WL+  N CP+C+T
Sbjct: 601 YKEEEEIGRLECGHDFHSQCIKEWLKQKNLCPICKT 634

[Close]
BLAST of Cp4.1LG05g11580 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein )

HSP 1 Score: 65.5 bits (158), Expect = 2.1e-10
Identity = 31/81 (38.27%), Postives = 46/81 (56.79%), Query Frame = 0 

Query: 655 EHSPPAMNGAPA--SAIERLQRQKFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYH 714
           E+ P      PA  SAI+ L   K      + E   C+VC +  +   +V ++PC HV+H
Sbjct: 180 ENDPNRYGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFH 239

Query: 715 KCCILKWLEMSNSCPLCRTQL 734
           + C+L WLE+ NSCP+CR +L
Sbjct: 240 QDCLLPWLELHNSCPVCRFEL 260

[Close]
BLAST of Cp4.1LG05g11580 vs. TAIR 10
Match: AT4G05350.1 (RING/U-box superfamily protein )

HSP 1 Score: 63.5 bits (153), Expect = 7.9e-10
Identity = 27/66 (40.91%), Postives = 44/66 (66.67%), Query Frame = 0 

Query: 671 RLQRQKFDGLREEEEEGDCSVCCEALKG---EEEVSRIPCGHVYHKCCILKWLEMSNSCP 730
           R++ ++F  L+ E E   CS+C E+L       +V+R+ C HV+H  C+L+WL+  N+CP
Sbjct: 141 RMKAEEFKSLKMETE--PCSICLESLVSGPKPRDVTRMTCSHVFHNGCLLEWLKRKNTCP 200

Query: 731 LCRTQL 734
           LCRT++
Sbjct: 201 LCRTEI 204

[Close]
BLAST of Cp4.1LG05g11580 vs. TAIR 10
Match: AT1G26800.1 (RING/U-box superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 1.0e-09
Identity = 31/80 (38.75%), Postives = 43/80 (53.75%), Query Frame = 0 

Query: 654 EEHSPPAMNGAPASAIERLQRQKFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHK 713
           EE  PPA      ++I+ +   + DG      EG+C +C E  K EE V  +PC H +H 
Sbjct: 87  EEGRPPASK----ASIDAMPIVEIDGC-----EGECVICLEEWKSEETVKEMPCKHRFHG 146

Query: 714 CCILKWLEMSNSCPLCRTQL 734
            CI KWL    SCP+CR ++
Sbjct: 147 GCIEKWLGFHGSCPVCRYEM 157

[Close]
BLAST of Cp4.1LG05g11580 vs. TAIR 10
Match: AT3G10815.1 (RING/U-box superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 1.0e-09
Identity = 30/87 (34.48%), Postives = 49/87 (56.32%), Query Frame = 0 

Query: 650 PFLVEEHSPPAMNGAPASAIERLQ-RQKFDGLREEEEEGDCSVCCEALKGEEEVSRIPCG 709
           P L +   PP  + A  +++++++ RQK  GL     +  C VC +  +   +  ++PC 
Sbjct: 86  PALQDRRGPPPASLAAINSLQKIKIRQKHLGL-----DPYCPVCQDQFEIGSDARKMPCK 145

Query: 710 HVYHKCCILKWLEMSNSCPLCRTQLEQ 736
           H+YH  CIL WL   N+CP+CR +L Q
Sbjct: 146 HIYHSECILPWLVQRNTCPVCRKELPQ 167

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g11580 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P0CH302.9e-0939.51E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV... [more]
E9QAU82.9e-0933.68E3 ubiquitin-protein ligase RNF165 OS=Mus musculus OX=10090 GN=Rnf165 PE=1 SV=1[more]
Q8LPN72.9e-0938.27E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19... [more]
Q6ZSG13.8e-0933.68E3 ubiquitin-protein ligase RNF165 OS=Homo sapiens OX=9606 GN=RNF165 PE=1 SV=1[more]
Q6AXU45.0e-0938.71E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus OX=10116 GN=Rnf181 PE=1 ... [more]
BLAST of Cp4.1LG05g11580 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6605227.11.39e-14592.38E3 ubiquitin-protein ligase MPSR1, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023533112.11.68e-145100.00E3 ubiquitin ligase BIG BROTHER-like [Cucurbita pepo subsp. pepo][more]
KAG6605224.15.57e-14592.38E3 ubiquitin-protein ligase RDUF1, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022947839.11.72e-14392.83E3 ubiquitin-protein ligase RNF38-like [Cucurbita moschata][more]
XP_022947933.14.28e-12197.37E3 ubiquitin-protein ligase RNF126-like [Cucurbita moschata] >XP_023532920.1 E3 ... [more]
BLAST of Cp4.1LG05g11580 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1G8268.31e-14492.83E3 ubiquitin-protein ligase RNF38-like OS=Cucurbita moschata OX=3662 GN=LOC11145... [more]
A0A6J1G7Z52.07e-12197.37E3 ubiquitin-protein ligase RNF126-like OS=Cucurbita moschata OX=3662 GN=LOC1114... [more]
A0A6J1KYV14.01e-11593.16E3 ubiquitin-protein ligase RNF126-like OS=Cucurbita maxima OX=3661 GN=LOC111499... [more]
A0A6J1G8091.49e-11194.54probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita moschata OX=3662 GN=LOC1... [more]
A0A6J1L3871.72e-11074.44RING-H2 finger protein ATL16-like OS=Cucurbita maxima OX=3661 GN=LOC111499493 PE... [more]
BLAST of Cp4.1LG05g11580 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G45180.12.5e-1137.50RING/U-box superfamily protein [more]
AT3G19950.12.1e-1038.27RING/U-box superfamily protein [more]
AT4G05350.17.9e-1040.91RING/U-box superfamily protein [more]
AT1G26800.11.0e-0938.75RING/U-box superfamily protein [more]
AT3G10815.11.0e-0934.48RING/U-box superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 480..525
e-value: 0.028
score: 23.6
coord: 689..729
e-value: 6.8E-6
score: 35.6
coord: 148..193
e-value: 0.022
score: 24.0
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 479..516
e-value: 7.4E-7
score: 29.4
coord: 688..730
e-value: 4.0E-11
score: 43.1
coord: 147..183
e-value: 3.0E-7
score: 30.7
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 689..730
score: 12.902362
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 480..525
score: 9.45016
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 148..191
score: 8.904299
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 445..533
e-value: 1.4E-12
score: 49.1
coord: 112..191
e-value: 2.2E-13
score: 51.7
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 664..735
e-value: 4.2E-19
score: 69.5
NoneNo IPR availablePANTHERPTHR45931SI:CH211-59O9.10coord: 58..184
NoneNo IPR availablePANTHERPTHR45931SI:CH211-59O9.10coord: 601..734
NoneNo IPR availablePANTHERPTHR45931SI:CH211-59O9.10coord: 383..516
NoneNo IPR availablePANTHERPTHR45931:SF9E3 UBIQUITIN-PROTEIN LIGASE RNF12-B-LIKEcoord: 601..734
NoneNo IPR availablePANTHERPTHR45931:SF9E3 UBIQUITIN-PROTEIN LIGASE RNF12-B-LIKEcoord: 58..184
NoneNo IPR availablePANTHERPTHR45931:SF9E3 UBIQUITIN-PROTEIN LIGASE RNF12-B-LIKEcoord: 383..516
NoneNo IPR availableCDDcd16454RING-H2_PA-TM-RINGcoord: 688..730
e-value: 8.03533E-16
score: 69.6381
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 141..184
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 679..733
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 473..525

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g11580.1Cp4.1LG05g11580.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding